AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072000 MtrunA17_Chr1g0178091 98.565 906 13 0 1 906 1 906 0.0 1842
Msa0072000 MtrunA17_Chr7g0266791 65.862 911 274 10 1 905 1 880 0.0 1131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072000 AT3G11560.3 59.330 836 310 8 59 889 46 856 0.0 983
Msa0072000 AT3G11560.2 59.330 836 310 8 59 889 46 856 0.0 983
Msa0072000 AT3G11560.4 59.330 836 310 8 59 889 46 856 0.0 983
Msa0072000 AT5G06220.3 55.653 911 367 14 1 904 1 881 0.0 945
Msa0072000 AT5G06220.2 53.863 932 376 15 1 904 1 906 0.0 915
Msa0072000 AT5G06220.1 51.872 908 354 14 1 904 1 829 0.0 838
Msa0072000 AT3G11560.1 60.825 582 205 5 59 635 46 609 0.0 721
Msa0072000 AT3G11560.5 60.825 582 205 5 59 635 46 609 0.0 721

Find 252 sgRNAs with CRISPR-Local

Find 961 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTGTGTTCTTCGCTTTC+TGG 0.066218 1_2:-44542634 Msa0072000:three_prime_UTR
AGGTTCCGGGTCGGGCTTTC+TGG 0.093751 1_2:+44546435 None:intergenic
CATTTGCTGTTTGCTCTTAT+TGG 0.123771 1_2:-44549643 Msa0072000:CDS
GAGAAGGATTTGGCTATATT+TGG 0.149892 1_2:-44550312 Msa0072000:CDS
ATTGCCTACTATTTAGTAAA+TGG 0.157021 1_2:-44554827 Msa0072000:CDS
GAATTATAAGCTTGACTTAC+AGG 0.172414 1_2:+44551123 None:intergenic
CTCAAGAGATCCAACCTTTC+TGG 0.181342 1_2:+44542806 None:intergenic
CTTCCTGGTCTGATGAAAAT+TGG 0.184892 1_2:-44542659 Msa0072000:three_prime_UTR
CCTTAACGGAAGAAAATTAT+TGG 0.191136 1_2:+44557177 None:intergenic
GTTTAAACTTCCTCAAATTC+TGG 0.222075 1_2:-44541948 Msa0072000:three_prime_UTR
ATTTATTACAGGTATCTTAT+TGG 0.226122 1_2:-44549928 Msa0072000:intron
TTTATTACAGGTATCTTATT+GGG 0.237944 1_2:-44549927 Msa0072000:intron
AGAGAATTTCTTGTACATTT+TGG 0.251325 1_2:-44551078 Msa0072000:CDS
TGGGTCACTGCTTCCGCATT+TGG 0.259019 1_2:+44549668 None:intergenic
GGTTCCTGGTTCCCGATATT+TGG 0.265711 1_2:-44542494 Msa0072000:three_prime_UTR
TTCACTTGCAGCATATAATA+AGG 0.269650 1_2:+44552216 None:intergenic
GAAGGATTTCATTGGGTTCT+TGG 0.270749 1_2:+44544980 None:intergenic
TGTGACTGTTTGAGAGCTTA+TGG 0.275671 1_2:-44542130 Msa0072000:three_prime_UTR
GGAGCATCGGGTGGGGTTCC+TGG 0.280362 1_2:-44542508 Msa0072000:three_prime_UTR
TCCGCATTTGGAGGACCTTC+TGG 0.280790 1_2:+44549680 None:intergenic
TTGGAAAATCTCGTGGATTC+TGG 0.286568 1_2:-44546480 Msa0072000:CDS
CAACTCCTCTCTAAGAAATA+TGG 0.312711 1_2:+44542595 Msa0071990:CDS
TTTGGATTCTTTATTGCTTT+AGG 0.319727 1_2:-44550294 Msa0072000:CDS
CTGATTGATAGGCACTTCTT+TGG 0.322607 1_2:+44544911 None:intergenic
AGTCAATTCATCACCTATTA+AGG 0.322844 1_2:+44544006 None:intergenic
GGTTCCGGGTCGGGCTTTCT+GGG 0.326767 1_2:+44546436 None:intergenic
AAGACAAATCATGTTGTATA+AGG 0.336173 1_2:+44554784 None:intergenic
ATACACGTGACGATGATTTA+TGG 0.336547 1_2:+44554502 None:intergenic
TTGCCTACTATTTAGTAAAT+GGG 0.337487 1_2:-44554826 Msa0072000:CDS
TTTGTTAGCTATACATAAAT+CGG 0.341761 1_2:+44542692 None:intergenic
TAAGAAAGAAGCTGAATTCC+TGG 0.342804 1_2:-44547827 Msa0072000:CDS
TTTGAACATCACATATCTTT+CGG 0.342805 1_2:+44542447 Msa0071990:CDS
TCCATGAGCACTGAGATAAC+TGG 0.352935 1_2:-44551177 Msa0072000:CDS
CTGAAGTGTACGAATGGTTT+TGG 0.355223 1_2:-44551519 Msa0072000:CDS
CTCAAAGCGAAGGATTTCAT+TGG 0.379425 1_2:+44544972 None:intergenic
GGGTCGGGCTTTCTGGGTAT+AGG 0.385827 1_2:+44546442 None:intergenic
TCAAGCTTATAATTCTATAA+AGG 0.386303 1_2:-44551115 Msa0072000:CDS
TTGGTCAAAAGGACCTTAAT+AGG 0.388491 1_2:-44544019 Msa0072000:CDS
ACAAAACTTAACATTCTTCC+TGG 0.391665 1_2:-44542674 Msa0072000:three_prime_UTR
TGGTCCACAACCCCTACATT+TGG 0.398293 1_2:+44545000 None:intergenic
TGAGCATCCACATCAGGTTC+CGG 0.399986 1_2:+44546421 None:intergenic
TGTTAGGCACAACAAGTTGA+TGG 0.400862 1_2:-44549464 Msa0072000:intron
ATGGTCACCCTTCCAAATAT+CGG 0.405249 1_2:+44542482 Msa0071990:CDS
ATACAATTGATATGAACTAA+TGG 0.407601 1_2:+44549873 None:intergenic
TTTGTGATGCTGGTGATTCC+CGG 0.407876 1_2:+44549725 None:intergenic
TCCACATCAGGTTCCGGGTC+GGG 0.407937 1_2:+44546427 None:intergenic
CTGCCTCGGGTTTGGTCAAA+AGG 0.408786 1_2:-44544030 Msa0072000:CDS
TGAGATAACTGGTAGTTTGA+TGG 0.414550 1_2:-44551166 Msa0072000:CDS
TTTGAAAGGATGACTAAAAT+GGG 0.414672 1_2:-44542238 Msa0072000:three_prime_UTR
AAGTACACGAACATTTCTTT+TGG 0.422990 1_2:-44550268 Msa0072000:CDS
AACTGAAGCCATGTCAGTTA+AGG 0.424587 1_2:+44543955 None:intergenic
CATGTGTCAAGCTCTAGTTC+TGG 0.429376 1_2:-44547901 Msa0072000:CDS
TATTGATGTTGGTGCTGCCT+CGG 0.429403 1_2:-44544044 Msa0072000:CDS
TTCGTACACTTCAGGCTGTT+TGG 0.429694 1_2:+44551528 None:intergenic
CTGGTGATTCCCGGATAAAA+AGG 0.430228 1_2:+44549734 None:intergenic
CACCGGTTGGTGAGGAGGAC+AGG 0.430373 1_2:-44546688 Msa0072000:CDS
TTTGACAAACTAAAAGAAAC+GGG 0.431505 1_2:-44544346 Msa0072000:CDS
ATGCCTTCACCCATGCGGTT+TGG 0.433558 1_2:+44554448 None:intergenic
TGTTGGTGCTGCCTCGGGTT+TGG 0.433951 1_2:-44544038 Msa0072000:CDS
AGCTGATGGAACTTGAGAAA+AGG 0.434158 1_2:-44544936 Msa0072000:CDS
AACCCCACCCGATGCTCCTC+AGG 0.434501 1_2:+44542513 Msa0071990:CDS
TTCACACAGGTTACTGCCGT+TGG 0.436149 1_2:-44543002 Msa0072000:intron
CATATTTCTTAGAGAGGAGT+TGG 0.437810 1_2:-44542594 Msa0072000:three_prime_UTR
ATAAGTTCATTCCACGTGTC+TGG 0.438600 1_2:-44542565 Msa0072000:three_prime_UTR
GAGCATCCACATCAGGTTCC+GGG 0.438761 1_2:+44546422 None:intergenic
ATGGATGAAGTTAAATGATC+AGG 0.441279 1_2:-44542722 Msa0072000:exon
CTCCAGCATCACCGTTATAA+CGG 0.441709 1_2:+44544419 None:intergenic
GTCAATAAGTTTGAAGGGGA+CGG 0.443269 1_2:-44551463 Msa0072000:CDS
ATTGATGTTGGTGCTGCCTC+GGG 0.446845 1_2:-44544043 Msa0072000:CDS
CAACCTTTCTGGTGCATAAG+TGG 0.447890 1_2:+44542817 None:intergenic
GAGAAATGGATTTACCTTAA+CGG 0.448654 1_2:+44557163 None:intergenic
CAAAACCATTCGTACACTTC+AGG 0.449478 1_2:+44551520 None:intergenic
TCCTTTGTCAATAAGTTTGA+AGG 0.450682 1_2:-44551469 Msa0072000:CDS
TCCAGCATCACCGTTATAAC+GGG 0.453068 1_2:+44544420 None:intergenic
AACTAATGGATGAGAGTTGA+GGG 0.454028 1_2:+44549887 None:intergenic
TCACATATCTTTCGGAATTG+AGG 0.454039 1_2:+44542455 Msa0071990:CDS
AAGAGCAAACAGCAAATGCT+TGG 0.455991 1_2:+44549648 None:intergenic
CACTTATGCACCAGAAAGGT+TGG 0.457686 1_2:-44542816 Msa0072000:CDS
TTCTATCTCTGCTATCATCT+CGG 0.457753 1_2:+44552185 None:intergenic
CAACTTCTTGCTATTGATGT+TGG 0.459877 1_2:-44544055 Msa0072000:CDS
AAATCTTCAATTGGATCATC+GGG 0.462467 1_2:+44550228 None:intergenic
GTCACTGCTTCCGCATTTGG+AGG 0.465295 1_2:+44549671 None:intergenic
GCTAAGGCTATCTGCTCCCT+TGG 0.466582 1_2:-44551578 Msa0072000:CDS
GAAAGCAGCCTGTTCTGACT+TGG 0.466824 1_2:-44547866 Msa0072000:CDS
TCACACAGGTTACTGCCGTT+GGG 0.466862 1_2:-44543001 Msa0072000:intron
ATTCGAAAGGCAGCAATTTG+AGG 0.467776 1_2:+44554887 None:intergenic
ACCAGTTATCTCAGTGCTCA+TGG 0.469402 1_2:+44551176 None:intergenic
CCATTTGCTACCTCTGATGA+TGG 0.469525 1_2:-44554681 Msa0072000:CDS
ACAAAGGACGTCACTACAGC+TGG 0.474919 1_2:+44551484 None:intergenic
AACCTGTCCTCCTCACCAAC+CGG 0.476504 1_2:+44546686 None:intergenic
GGTTCAGAAGCAGCTGCAGC+AGG 0.477118 1_2:-44550986 Msa0072000:CDS
CTTTCGGAATTGAGGAAAGA+TGG 0.477482 1_2:+44542463 Msa0071990:CDS
TCAAAGCGAAGGATTTCATT+GGG 0.478454 1_2:+44544973 None:intergenic
TACCGGATGAAATCTTCAAT+TGG 0.478529 1_2:+44550219 None:intergenic
GAAATCTTCAATTGGATCAT+CGG 0.478976 1_2:+44550227 None:intergenic
CTACAATCCTGAGGAGCATC+GGG 0.479635 1_2:-44542520 Msa0072000:three_prime_UTR
AACAGCCTGCACCAAATGTA+GGG 0.479756 1_2:-44545011 Msa0072000:CDS
ATTCCACGTGTCTGGCACTC+CGG 0.480121 1_2:-44542557 Msa0072000:three_prime_UTR
TGTGGATTCAGATGATGAAA+TGG 0.481561 1_2:-44542741 Msa0072000:CDS
GATATAAATACGTTGTAATA+CGG 0.481799 1_2:-44542379 Msa0072000:three_prime_UTR
CCATCATCAGAGGTAGCAAA+TGG 0.483136 1_2:+44554681 None:intergenic
GCCCGTTATAACGGTGATGC+TGG 0.483322 1_2:-44544421 Msa0072000:CDS
ATTGCTGCAATTGCTAAACT+TGG 0.487614 1_2:-44551231 Msa0072000:CDS
GTTGTAAAAGAGATGCAATA+TGG 0.488049 1_2:+44542406 Msa0071990:CDS
TCTATCTCTGCTATCATCTC+GGG 0.488428 1_2:+44552186 None:intergenic
TGCACCAAATGTAGGGGTTG+TGG 0.488543 1_2:-44545004 Msa0072000:CDS
AAGAGATGCAATATGGAAGC+TGG 0.489238 1_2:+44542413 Msa0071990:CDS
TAAATGGGGCAGTTCAAGAA+AGG 0.492643 1_2:-44554811 Msa0072000:CDS
ATGGAGTGCATGGAGGAACT+TGG 0.493227 1_2:-44549445 Msa0072000:CDS
TTTCTTCTTCATCCGTTACA+TGG 0.494088 1_2:-44557218 Msa0072000:exon
TGCAATTGCTAAACTTGGCC+CGG 0.494454 1_2:-44551226 Msa0072000:CDS
CCTGGTTCCCGATATTTGGA+AGG 0.494657 1_2:-44542490 Msa0072000:three_prime_UTR
GCTGATGGAACTTGAGAAAA+GGG 0.494748 1_2:-44544935 Msa0072000:CDS
TGGTCACCCTTCCAAATATC+GGG 0.496935 1_2:+44542483 Msa0071990:CDS
TCAATAAGTTTGAAGGGGAC+GGG 0.498083 1_2:-44551462 Msa0072000:CDS
TAAAGGTGGACAGGAGCAAA+AGG 0.500329 1_2:-44546631 Msa0072000:intron
TCGAATGGTTCCTCTAGTGT+AGG 0.500669 1_2:-44554870 Msa0072000:CDS
TAGTTTGTGAAGAGCTGGAT+TGG 0.501881 1_2:-44549760 Msa0072000:CDS
AAGCTTTATATGATGCAGCC+AGG 0.502582 1_2:-44554548 Msa0072000:CDS
TGCCCCATTTACTAAATAGT+AGG 0.504706 1_2:+44554823 None:intergenic
AGGAGGACAGGTTTATGAAA+GGG 0.505159 1_2:-44546676 Msa0072000:CDS
ATCCAATTGAAGATTTCATC+CGG 0.507579 1_2:-44550221 Msa0072000:intron
ATCATCTGAATCCACATCAC+TGG 0.510706 1_2:+44542748 None:intergenic
CATACATGAGCATCCACATC+AGG 0.511008 1_2:+44546415 None:intergenic
CTCCTCAGGATTGTAGCCAC+TGG 0.511858 1_2:+44542527 Msa0071990:CDS
GCTGCAGCAGGCTATTGATA+AGG 0.512317 1_2:-44550974 Msa0072000:CDS
AATCATCGTCACGTGTATCC+TGG 0.513828 1_2:-44554497 Msa0072000:CDS
TTCCACGTGTCTGGCACTCC+GGG 0.514233 1_2:-44542556 Msa0072000:three_prime_UTR
CTCCTCACCAACCGGTGTGA+TGG 0.515931 1_2:+44546694 None:intergenic
CGTTGGGCATGCAGCAATGT+TGG 0.517058 1_2:-44542985 Msa0072000:CDS
CGAATGGTTCCTCTAGTGTA+GGG 0.518510 1_2:-44554869 Msa0072000:CDS
TCAAATTGCTGCCTTTCGAA+TGG 0.520137 1_2:-44554885 Msa0072000:CDS
AGTCTGTACAGTGAAATTGC+AGG 0.520302 1_2:+44542278 Msa0071990:intron
GAACAGCCTGCACCAAATGT+AGG 0.520502 1_2:-44545012 Msa0072000:CDS
TGCATTGGTCCAGTTTGCTA+AGG 0.521404 1_2:-44551594 Msa0072000:intron
CATCCACTTATGCACCAGAA+AGG 0.521547 1_2:-44542820 Msa0072000:CDS
ATATTTCTTAGAGAGGAGTT+GGG 0.521772 1_2:-44542593 Msa0072000:three_prime_UTR
GCTACAATCCTGAGGAGCAT+CGG 0.523452 1_2:-44542521 Msa0072000:three_prime_UTR
CTATTGATAAGGAGAAAATA+TGG 0.523593 1_2:-44550963 Msa0072000:CDS
TTATTACAGGTATCTTATTG+GGG 0.523663 1_2:-44549926 Msa0072000:intron
GAGTGAAATAGAGAAGGAAG+AGG 0.524441 1_2:+44557304 None:intergenic
TTCTCTGATTAAGCTCTCCA+AGG 0.529124 1_2:+44551561 None:intergenic
GGTGAAGGCATTGTCATGTC+AGG 0.529130 1_2:-44554436 Msa0072000:intron
ATGTCAATGTATTTGTTCAA+AGG 0.529604 1_2:-44552162 Msa0072000:CDS
TGTAGCCACTGGTGTTTACC+CGG 0.530101 1_2:+44542538 Msa0071990:CDS
ATGACAATGTAAAGGTGGAC+AGG 0.530740 1_2:-44546640 Msa0072000:CDS
TTGCTCGGAAAGATGCCTCC+AGG 0.532885 1_2:+44547809 None:intergenic
ATAGGTAGTTTGTGAAGAGC+TGG 0.533672 1_2:-44549765 Msa0072000:intron
ATGGCTTCAGTTGTTCCTAT+CGG 0.533849 1_2:-44543944 Msa0072000:CDS
CAATGCATGTAAGTGCAAGC+AGG 0.534320 1_2:+44551250 None:intergenic
TTCATATCAATTGTATGTCG+AGG 0.534629 1_2:-44549866 Msa0072000:intron
AGACAAATTGGAAAATCTCG+TGG 0.536140 1_2:-44546487 Msa0072000:CDS
TATAATTCTATAAAGGATGT+TGG 0.536506 1_2:-44551108 Msa0072000:CDS
AGGAATGGCACATGGAATGA+AGG 0.537052 1_2:+44542298 Msa0071990:intron
AGAGCAAACAGCAAATGCTT+GGG 0.537493 1_2:+44549649 None:intergenic
CATGATTTGTCTTCGAGTAG+TGG 0.540164 1_2:-44554774 Msa0072000:CDS
AGAAAAGAGTGAAATAGAGA+AGG 0.541467 1_2:+44557298 None:intergenic
AGCATCACAAAACAGTCTCA+TGG 0.542742 1_2:-44549713 Msa0072000:CDS
TAGAAAGAATGACAATGTAA+AGG 0.542872 1_2:-44546648 Msa0072000:CDS
GCCCGACCCGGAACCTGATG+TGG 0.543249 1_2:-44546428 Msa0072000:CDS
ATCCACATCAGGTTCCGGGT+CGG 0.548048 1_2:+44546426 None:intergenic
GCTTCTAAGAAATGAGCTGA+TGG 0.549207 1_2:-44544950 Msa0072000:CDS
AGACCAAACCGCATGGGTGA+AGG 0.550828 1_2:-44554451 Msa0072000:CDS
TTGGGGTAGACCAAACCGCA+TGG 0.552422 1_2:-44554458 Msa0072000:CDS
CAACATTGCTGCATGCCCAA+CGG 0.554350 1_2:+44542986 None:intergenic
CCTTTGTCAATAAGTTTGAA+GGG 0.556523 1_2:-44551468 Msa0072000:CDS
GTACAGTGAAATTGCAGGAA+TGG 0.556759 1_2:+44542283 Msa0071990:intron
GATGATGGTGCCCGTTATAA+CGG 0.557094 1_2:-44544430 Msa0072000:CDS
CAACAAGTTGATGGAGTGCA+TGG 0.559296 1_2:-44549455 Msa0072000:CDS
GGGATGCAATCCAGAATTTG+AGG 0.559998 1_2:+44541938 Msa0071990:intron
TTCTTAGAAGCTCAAAGCGA+AGG 0.563042 1_2:+44544962 None:intergenic
ATGCCAAGAAAATAGTTGAC+GGG 0.563199 1_2:-44548239 Msa0072000:CDS
CCTTCCAAATATCGGGAACC+AGG 0.563273 1_2:+44542490 Msa0071990:CDS
GAGGAGGACAGGTTTATGAA+AGG 0.563646 1_2:-44546677 Msa0072000:CDS
CTGGTTCCCGATATTTGGAA+GGG 0.564236 1_2:-44542489 Msa0072000:three_prime_UTR
CTTTCTGGTGCATAAGTGGA+TGG 0.565207 1_2:+44542821 None:intergenic
TCAGAGATATGTACCATCCC+TGG 0.565736 1_2:-44542955 Msa0072000:intron
AAGCCAAGCTGTTGAAAACC+AGG 0.567268 1_2:+44554479 None:intergenic
TTAGTACTGGCGTCAGCTTG+TGG 0.567478 1_2:+44554639 None:intergenic
CGTTGAGTGGGGTTCAGAAG+AGG 0.568636 1_2:-44551028 Msa0072000:CDS
ATCCTGAGGAGCATCGGGTG+GGG 0.569446 1_2:-44542515 Msa0072000:three_prime_UTR
ACAACCCCTACATTTGGTGC+AGG 0.572458 1_2:+44545006 None:intergenic
GAACTAATGGATGAGAGTTG+AGG 0.573597 1_2:+44549886 None:intergenic
CATCACACCGGTTGGTGAGG+AGG 0.575965 1_2:-44546693 Msa0072000:CDS
TGATGCCATATTTCTTAGAG+AGG 0.576119 1_2:-44542600 Msa0072000:three_prime_UTR
TGGTAGTTTGATGGACATGC+TGG 0.577164 1_2:-44551157 Msa0072000:CDS
TTGTCTTCGAGTAGTGGTCA+AGG 0.577713 1_2:-44554768 Msa0072000:CDS
AACCATCACACCGGTTGGTG+AGG 0.578656 1_2:-44546696 Msa0072000:CDS
CATAATGTTTATACCAGGGA+TGG 0.584245 1_2:+44542942 None:intergenic
CCCTTCAAACTTATTGACAA+AGG 0.585309 1_2:+44551468 None:intergenic
AAAAGCTGATTCTCTGCAAG+AGG 0.585912 1_2:-44547788 Msa0072000:intron
GCATCACAAAACAGTCTCAT+GGG 0.587479 1_2:-44549712 Msa0072000:CDS
AGGTGATGAATTGACTGAGA+AGG 0.589472 1_2:-44543999 Msa0072000:CDS
GAGATTTAACTGCCATGTAA+CGG 0.592044 1_2:+44557206 None:intergenic
TCAATGTATTTGTTCAAAGG+AGG 0.593230 1_2:-44552159 Msa0072000:intron
GATGCCAAGAAAATAGTTGA+CGG 0.593833 1_2:-44548240 Msa0072000:CDS
TCTCTGATTAAGCTCTCCAA+GGG 0.594955 1_2:+44551562 None:intergenic
CAATCCTGAGGAGCATCGGG+TGG 0.595880 1_2:-44542517 Msa0072000:three_prime_UTR
GTCAATGTCAACCAGTGATG+TGG 0.597294 1_2:-44542759 Msa0072000:CDS
TGGGGTAGACCAAACCGCAT+GGG 0.599216 1_2:-44554457 Msa0072000:CDS
AATAAACAGGATGTCTTGCA+AGG 0.599328 1_2:-44544082 Msa0072000:intron
AATCCTGAGGAGCATCGGGT+GGG 0.600124 1_2:-44542516 Msa0072000:three_prime_UTR
AGTTTGATGGACATGCTGGT+TGG 0.601484 1_2:-44551153 Msa0072000:CDS
CAGCTGAATTTCTGTCCAGA+GGG 0.602473 1_2:-44549565 Msa0072000:intron
AAAGAAAACATACAGAGCAA+TGG 0.602552 1_2:+44551426 None:intergenic
AGCTTTATATGATGCAGCCA+GGG 0.604106 1_2:-44554547 Msa0072000:CDS
TGCCTACTATTTAGTAAATG+GGG 0.604581 1_2:-44554825 Msa0072000:CDS
AAAATTGAGCTAAAGTCATG+TGG 0.605806 1_2:+44541973 Msa0071990:intron
TAAAAGAACCTTAACTGACA+TGG 0.607581 1_2:-44543963 Msa0072000:CDS
GAAATTGCAGGAATGGCACA+TGG 0.608323 1_2:+44542290 Msa0071990:intron
AAAGAATGACAATGTAAAGG+TGG 0.609110 1_2:-44546645 Msa0072000:CDS
GTCAAGCTCTAGTTCTGGAA+AGG 0.610770 1_2:-44547896 Msa0072000:CDS
CAGAAAGGTTGGATCTCTTG+AGG 0.611545 1_2:-44542805 Msa0072000:CDS
AAATGGGGCAGTTCAAGAAA+GGG 0.611700 1_2:-44554810 Msa0072000:CDS
AGAAGCATTAAAATGCCGAT+AGG 0.614251 1_2:+44543929 None:intergenic
CAGTCAACGATAAAAGACTC+AGG 0.618660 1_2:-44548201 Msa0072000:CDS
ACCAGAAGGTCCTCCAAATG+CGG 0.618728 1_2:-44549681 Msa0072000:CDS
GCTTTATCAAATACAGCACA+TGG 0.618937 1_2:-44549613 Msa0072000:CDS
GCTCTAAAAGCTGCAGCTCG+AGG 0.619043 1_2:+44551054 None:intergenic
CTTTGTCAATAAGTTTGAAG+GGG 0.619898 1_2:-44551467 Msa0072000:CDS
AACAGCCTGAAGTGTACGAA+TGG 0.620134 1_2:-44551525 Msa0072000:CDS
TCGGGCTTTCTGGGTATAGG+AGG 0.620870 1_2:+44546445 None:intergenic
GATCAAACCATCACACCGGT+TGG 0.625270 1_2:-44546701 Msa0072000:CDS
GACAACATCTGAAAGCATTG+AGG 0.629336 1_2:-44550932 Msa0072000:intron
TATACCCAGAAAGCCCGACC+CGG 0.629720 1_2:-44546440 Msa0072000:CDS
GATTTGATGATCAGTGATGA+TGG 0.631118 1_2:-44544445 Msa0072000:CDS
CTATCAATCAGAAAATAATG+AGG 0.631852 1_2:-44544899 Msa0072000:intron
GACAGTCATACCATCATCAG+AGG 0.633736 1_2:+44554671 None:intergenic
CACTAGAGGAACCATTCGAA+AGG 0.635054 1_2:+44554874 None:intergenic
TTTAGAGCAAACGTTGAGTG+GGG 0.635179 1_2:-44551039 Msa0072000:CDS
TGGAGTGCATGGAGGAACTT+GGG 0.637077 1_2:-44549444 Msa0072000:CDS
TGATGCTGGAGGTGTTCAGA+TGG 0.637713 1_2:-44544407 Msa0072000:CDS
TTAATGCAGAGATAAGACAT+TGG 0.637829 1_2:-44548268 Msa0072000:intron
TACCCGGAGTGCCAGACACG+TGG 0.640012 1_2:+44542554 Msa0071990:CDS
GCAGCTGAATTTCTGTCCAG+AGG 0.641446 1_2:-44549566 Msa0072000:CDS
TAGTGTAGGGAGAAAAGTGT+CGG 0.645116 1_2:-44554856 Msa0072000:CDS
AGCATATAATAAGGAGTACA+CGG 0.648767 1_2:+44552225 None:intergenic
CGTTATAACGGTGATGCTGG+AGG 0.661558 1_2:-44544418 Msa0072000:CDS
GCACTCCGGGTAAACACCAG+TGG 0.663248 1_2:-44542543 Msa0072000:three_prime_UTR
TATTACAGGTATCTTATTGG+GGG 0.669200 1_2:-44549925 Msa0072000:intron
TAGAGAAGGAAGAGGTTGCG+TGG 0.670245 1_2:+44557312 None:intergenic
CATGGGCATAGTAAACCAGA+AGG 0.671641 1_2:-44549695 Msa0072000:CDS
AATGGCACATGGAATGAAGG+AGG 0.677257 1_2:+44542301 Msa0071990:CDS
GATGATGGTATGACTGTCAA+CGG 0.682026 1_2:-44554666 Msa0072000:CDS
AGGAAACTGTGACAAAGACA+AGG 0.691950 1_2:+44542321 Msa0071990:CDS
TGACAATGCCTTCACCCATG+CGG 0.692935 1_2:+44554443 None:intergenic
CACCAGTGGCTACAATCCTG+AGG 0.695000 1_2:-44542529 Msa0072000:three_prime_UTR
CAAACTAAAAGAAACGGGAA+CGG 0.697326 1_2:-44544341 Msa0072000:intron
CAAGTTGATGGAGTGCATGG+AGG 0.698840 1_2:-44549452 Msa0072000:CDS
ACAGCCTGCACCAAATGTAG+GGG 0.706149 1_2:-44545010 Msa0072000:CDS
TAGTGATCAAACCATCACAC+CGG 0.716684 1_2:-44546705 Msa0072000:CDS
GAAAGAAGCTGAATTCCTGG+AGG 0.720772 1_2:-44547824 Msa0072000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAATAAAAATAAA+AGG + chr1_2:44551263-44551282 None:intergenic 0.0%
!! AATTTATAATACAATACTTA+CGG + chr1_2:44543446-44543465 None:intergenic 10.0%
!!! TATTTGTAGTTTTTTATATT+AGG + chr1_2:44546162-44546181 None:intergenic 10.0%
!! TAGAATTATAATTCTATTAT+TGG + chr1_2:44546209-44546228 None:intergenic 10.0%
!! TTTATACAATTATTTATTAC+AGG - chr1_2:44549350-44549369 Msa0072000:intron 10.0%
!! AAAATAAAAATAAAAGGTTT+GGG + chr1_2:44551257-44551276 None:intergenic 10.0%
!! AAAAATAAAAATAAAAGGTT+TGG + chr1_2:44551258-44551277 None:intergenic 10.0%
!!! ATAAATTTGTTTATACTTTA+TGG - chr1_2:44553549-44553568 Msa0072000:intron 10.0%
!!! TGATTAAAGAAAGTTTTTTT+AGG - chr1_2:44542527-44542546 Msa0072000:three_prime_UTR 15.0%
!!! ATTTGTTTTTAATAGCAATT+GGG + chr1_2:44542702-44542721 None:intergenic 15.0%
!!! AATTTGTTTTTAATAGCAAT+TGG + chr1_2:44542703-44542722 None:intergenic 15.0%
!!! AATTTGAAATGATAACAAAA+TGG - chr1_2:44542770-44542789 Msa0072000:CDS 15.0%
!! TACATTCCTTAATAATATAA+CGG + chr1_2:44542921-44542940 None:intergenic 15.0%
!! ATTATAGTATTCAAATCATA+CGG + chr1_2:44543194-44543213 None:intergenic 15.0%
!! GATTTGAATACTATAATTAT+AGG - chr1_2:44543197-44543216 Msa0072000:intron 15.0%
!! ATGTTATAATTTATAAGTTG+CGG + chr1_2:44544081-44544100 None:intergenic 15.0%
!!! AAATTTATTTTCATAAATGC+AGG + chr1_2:44544947-44544966 None:intergenic 15.0%
!! TAATTAGGAATATTTACAAA+AGG + chr1_2:44545493-44545512 None:intergenic 15.0%
!!! ACTTTTTTTGTTTGAAAAAT+TGG + chr1_2:44545537-44545556 None:intergenic 15.0%
!!! ATTTTTCAAACAAAAAAAGT+AGG - chr1_2:44545537-44545556 Msa0072000:intron 15.0%
!!! TTAGTGTATTGTATATTTTT+AGG - chr1_2:44545746-44545765 Msa0072000:intron 15.0%
!!! TTACTTTTGTTTGTTAAATT+AGG - chr1_2:44545776-44545795 Msa0072000:intron 15.0%
!!! AATAAAATACAGATTTTATC+AGG + chr1_2:44547382-44547401 None:intergenic 15.0%
!! TAAAAAAATTATACAGTCAT+AGG + chr1_2:44548572-44548591 None:intergenic 15.0%
!! TTACAAAATACACAAATAAA+TGG + chr1_2:44548917-44548936 None:intergenic 15.0%
!!! ATTATTAAGTTGATTTAACT+GGG - chr1_2:44549485-44549504 Msa0072000:intron 15.0%
!!! TGTCTTATTTATTTTATGTT+AGG - chr1_2:44549809-44549828 Msa0072000:intron 15.0%
!! CAATAAAAACTATAAATACA+AGG + chr1_2:44550921-44550940 None:intergenic 15.0%
!!! CTTGTATTTATAGTTTTTAT+TGG - chr1_2:44550919-44550938 Msa0072000:intron 15.0%
!! AAATTTAAAAAGATAATAGG+TGG + chr1_2:44551003-44551022 None:intergenic 15.0%
!!! TTTTATATGAGAAAACAAAT+TGG - chr1_2:44551859-44551878 Msa0072000:intron 15.0%
!!! AATTTTATAAATACAATACG+CGG - chr1_2:44552135-44552154 Msa0072000:intron 15.0%
!!! TTGATTTTATTAGGAAATTT+AGG - chr1_2:44553296-44553315 Msa0072000:intron 15.0%
!!! TGATTTTATTAGGAAATTTA+GGG - chr1_2:44553297-44553316 Msa0072000:intron 15.0%
!! TTCCAAAAATAATCAAATAT+CGG - chr1_2:44553589-44553608 Msa0072000:intron 15.0%
!! GATTAATTATCTATTCTAAT+TGG - chr1_2:44554191-44554210 Msa0072000:intron 15.0%
!! CTAAGTAAAAAAAATCAATA+AGG + chr1_2:44554463-44554482 None:intergenic 15.0%
!!! TAAATGGTAATGAATAAAAA+AGG - chr1_2:44554621-44554640 Msa0072000:CDS 15.0%
!!! TTTTTTAGTTTTAAAAGACA+TGG + chr1_2:44555086-44555105 None:intergenic 15.0%
!! AAAAATTAAACAAATCAACA+TGG - chr1_2:44555607-44555626 Msa0072000:intron 15.0%
!!! GATTTAAAATTTTGAATACA+AGG + chr1_2:44556402-44556421 None:intergenic 15.0%
!! CAAAAAATGGAAATAAAGAA+AGG + chr1_2:44541950-44541969 Msa0071990:intron 20.0%
!!! TTCACGTTTATTTTTAAACT+CGG + chr1_2:44542266-44542285 Msa0071990:intron 20.0%
!!! CAAAAATTAGATTTTCAGTT+AGG + chr1_2:44542379-44542398 Msa0071990:CDS 20.0%
!!! GTTTTACCGTTATATTATTA+AGG - chr1_2:44542912-44542931 Msa0072000:intron 20.0%
!! TTGAAATGATTCTATGATTA+TGG - chr1_2:44543262-44543281 Msa0072000:intron 20.0%
!!! AGCTAATTAGTTTCAAATAA+CGG + chr1_2:44543758-44543777 None:intergenic 20.0%
!! GTTACTATGTAAAACAAAAT+AGG + chr1_2:44544293-44544312 None:intergenic 20.0%
!! GTAAATATTCCTAATTAAGT+AGG - chr1_2:44545496-44545515 Msa0072000:intron 20.0%
!!! CTTCTTTTAACAAATTTAGA+GGG - chr1_2:44545626-44545645 Msa0072000:intron 20.0%
!!! ATACTAAAGAAATTTTGCTA+TGG - chr1_2:44545662-44545681 Msa0072000:intron 20.0%
!!! TTTGCTAAATTACTTTTCTT+TGG - chr1_2:44545817-44545836 Msa0072000:intron 20.0%
!! ACTTTGGATATTATTACTAT+TGG + chr1_2:44546054-44546073 None:intergenic 20.0%
!!! TTTGTTTCTTTGCTTTATTA+TGG + chr1_2:44546242-44546261 None:intergenic 20.0%
!!! GTAAATCAAGTTTAGATTTT+AGG + chr1_2:44546853-44546872 None:intergenic 20.0%
!! ATTCATTTATGATGAAGAAT+AGG + chr1_2:44546937-44546956 None:intergenic 20.0%
!!! CTTCATCATAAATGAATTTT+TGG - chr1_2:44546940-44546959 Msa0072000:intron 20.0%
!!! TTTCTTAAATTTTGCAAGTT+AGG + chr1_2:44547009-44547028 None:intergenic 20.0%
!!! ACAGTTTATTAATTTTTCTC+AGG - chr1_2:44547038-44547057 Msa0072000:intron 20.0%
!! AATCATCTGATAAATAGTTT+CGG + chr1_2:44547263-44547282 None:intergenic 20.0%
!! TAAAACTAAAGATGTAAAGA+AGG + chr1_2:44547622-44547641 None:intergenic 20.0%
!! TCAAGCTTATAATTCTATAA+AGG - chr1_2:44548174-44548193 Msa0072000:intron 20.0%
!! TATAATTCTATAAAGGATGT+TGG - chr1_2:44548181-44548200 Msa0072000:intron 20.0%
!! AAAATTCTTATTCATTAACG+TGG - chr1_2:44548533-44548552 Msa0072000:intron 20.0%
!! TTCTATCATAAACCATATTT+CGG + chr1_2:44548621-44548640 None:intergenic 20.0%
!! AATACACAAATAAATGGAAA+AGG + chr1_2:44548911-44548930 None:intergenic 20.0%
!!! TTTGTGTATTTTGTAACAAA+AGG - chr1_2:44548921-44548940 Msa0072000:intron 20.0%
!!! TTGTATATATAGGTGTTTTA+AGG - chr1_2:44549214-44549233 Msa0072000:intron 20.0%
!! ATAAATGCACAAAAATTCAT+AGG + chr1_2:44549323-44549342 None:intergenic 20.0%
!! ATTTATTACAGGTATCTTAT+TGG - chr1_2:44549361-44549380 Msa0072000:intron 20.0%
!! TTTATTACAGGTATCTTATT+GGG - chr1_2:44549362-44549381 Msa0072000:intron 20.0%
!! ATACAATTGATATGAACTAA+TGG + chr1_2:44549419-44549438 None:intergenic 20.0%
!!! GATTATTAAGTTGATTTAAC+TGG - chr1_2:44549484-44549503 Msa0072000:intron 20.0%
!!! TTATTAAGTTGATTTAACTG+GGG - chr1_2:44549486-44549505 Msa0072000:intron 20.0%
!!! TAATTTATTAAGTTTGAAGC+TGG + chr1_2:44549787-44549806 None:intergenic 20.0%
!!! CATCAAAACATTACATTTTT+GGG - chr1_2:44549962-44549981 Msa0072000:intron 20.0%
!!! ATCAAAACATTACATTTTTG+GGG - chr1_2:44549963-44549982 Msa0072000:intron 20.0%
!! TAGTTGTTCATAAAAAGAAT+TGG - chr1_2:44550253-44550272 Msa0072000:CDS 20.0%
!! TACAAGGTGTATAAATAAAT+AGG + chr1_2:44550905-44550924 None:intergenic 20.0%
!!! AAATTCAGATTTTAAAGTGT+GGG + chr1_2:44551135-44551154 None:intergenic 20.0%
!!! TAAATTCAGATTTTAAAGTG+TGG + chr1_2:44551136-44551155 None:intergenic 20.0%
!! TGAAGAATATTGATATGTTA+AGG + chr1_2:44551220-44551239 None:intergenic 20.0%
!! TGAAATCAAATGTCAAAAAA+AGG + chr1_2:44551310-44551329 None:intergenic 20.0%
!!! TTTTTTTGACATTTGATTTC+AGG - chr1_2:44551309-44551328 Msa0072000:intron 20.0%
!!! TTTGTTTTCTCATATAAAAG+AGG + chr1_2:44551858-44551877 None:intergenic 20.0%
!!! TTTAGGTAAATGTAATTTTC+TGG - chr1_2:44552739-44552758 Msa0072000:intron 20.0%
!! ATGTATTAACATAAGATGTT+TGG - chr1_2:44552989-44553008 Msa0072000:intron 20.0%
!! TGTATTAACATAAGATGTTT+GGG - chr1_2:44552990-44553009 Msa0072000:intron 20.0%
!! TCATATATGTTCTTCAATAA+TGG - chr1_2:44553038-44553057 Msa0072000:intron 20.0%
!! AATTTAGAAATGACTATGAT+CGG + chr1_2:44553073-44553092 None:intergenic 20.0%
!! AAAGTAAAAATATGCTTGAT+TGG - chr1_2:44553099-44553118 Msa0072000:intron 20.0%
!! TTCCTAATAAAATCAAATAG+CGG + chr1_2:44553292-44553311 None:intergenic 20.0%
!! TTTATTCATTACCATTTACT+AGG + chr1_2:44554619-44554638 None:intergenic 20.0%
!! TGTTGTAAATAGCATTTATT+AGG + chr1_2:44554709-44554728 None:intergenic 20.0%
!!! TTTTGACAAACTAAAAGAAA+CGG - chr1_2:44554942-44554961 Msa0072000:intron 20.0%
!! ATTGATAAGAACAATCATAA+AGG + chr1_2:44555402-44555421 None:intergenic 20.0%
!!! ATTTAAAATCTTAAACTGCT+TGG - chr1_2:44556000-44556019 Msa0072000:intron 20.0%
!! ATCATCGTTCAAATATTTAT+AGG + chr1_2:44556091-44556110 None:intergenic 20.0%
!! AAACATCTTATATTGGAAAA+TGG + chr1_2:44556243-44556262 None:intergenic 20.0%
!! TAGTAAGAAACATCTTATAT+TGG + chr1_2:44556250-44556269 None:intergenic 20.0%
!! TTTGTTAGCTATACATAAAT+CGG + chr1_2:44556600-44556619 None:intergenic 20.0%
!! GATATAAATACGTTGTAATA+CGG - chr1_2:44556910-44556929 Msa0072000:intron 20.0%
!!! ATCCAAATATACTTTTTGAA+AGG - chr1_2:44557037-44557056 Msa0072000:intron 20.0%
!!! ATCCTTTCAAAAAGTATATT+TGG + chr1_2:44557042-44557061 None:intergenic 20.0%
!!! TTGACATACTTTTAGTTTTA+AGG - chr1_2:44557094-44557113 Msa0072000:intron 20.0%
!!! TTTTAGTTTTAAGGTCTATA+CGG - chr1_2:44557103-44557122 Msa0072000:intron 20.0%
!!! TTATTTTTAAACTCGGTATC+CGG + chr1_2:44542259-44542278 Msa0071990:intron 25.0%
! ATCAATGATATGTATAAGCT+AGG - chr1_2:44542285-44542304 Msa0072000:three_prime_UTR 25.0%
! TTTCTTTAATCATATACTCG+TGG + chr1_2:44542519-44542538 Msa0071990:CDS 25.0%
!!! AAAGTTTTTTTAGGTCAAAG+AGG - chr1_2:44542536-44542555 Msa0072000:three_prime_UTR 25.0%
! GAAATATCAAATCAACTTGT+TGG - chr1_2:44542567-44542586 Msa0072000:three_prime_UTR 25.0%
! AACTGAAGGAGAATTATAAA+TGG + chr1_2:44542734-44542753 None:intergenic 25.0%
! GAAATGATAACAAAATGGAT+AGG - chr1_2:44542775-44542794 Msa0072000:CDS 25.0%
! AATAATATAACGGTAAAACG+CGG + chr1_2:44542911-44542930 None:intergenic 25.0%
!! TTATAGGCAAAATCTTCTTT+TGG - chr1_2:44543213-44543232 Msa0072000:intron 25.0%
! AAATAGTTTGGTTGAAATTC+AGG - chr1_2:44543840-44543859 Msa0072000:intron 25.0%
! TTAATCTGGTTATTCAAACA+GGG - chr1_2:44544261-44544280 Msa0072000:intron 25.0%
! ATGTAAAACAAAATAGGACA+AGG + chr1_2:44544287-44544306 None:intergenic 25.0%
! ATTGCCTACTATTTAGTAAA+TGG - chr1_2:44544462-44544481 Msa0072000:intron 25.0%
! TTGCCTACTATTTAGTAAAT+GGG - chr1_2:44544463-44544482 Msa0072000:intron 25.0%
! AAGACAAATCATGTTGTATA+AGG + chr1_2:44544508-44544527 None:intergenic 25.0%
!!! CTATTTTACGTTTTCTAAGA+CGG - chr1_2:44544565-44544584 Msa0072000:intron 25.0%
!!! TATTTTACGTTTTCTAAGAC+GGG - chr1_2:44544566-44544585 Msa0072000:intron 25.0%
! TACTAACCTTGAAAAAATGA+GGG - chr1_2:44544667-44544686 Msa0072000:intron 25.0%
!!! TTTTGTTTTGCATGTCTTAT+TGG - chr1_2:44545072-44545091 Msa0072000:intron 25.0%
! GAGTTAATAGAACTTAATCT+TGG - chr1_2:44545133-44545152 Msa0072000:intron 25.0%
! GGTATTATGTACAAAAATCT+CGG + chr1_2:44545184-44545203 None:intergenic 25.0%
!! AAACTAATGCTTTTAACAGT+TGG + chr1_2:44545277-44545296 None:intergenic 25.0%
!!! ATACAAATACTGTTGCTTTA+TGG - chr1_2:44545305-44545324 Msa0072000:intron 25.0%
! TTGTTTGAAAAATTGGTATC+TGG + chr1_2:44545530-44545549 None:intergenic 25.0%
!! GCTTCTTTTAACAAATTTAG+AGG - chr1_2:44545625-44545644 Msa0072000:intron 25.0%
!! GTTTGTTAAATTAGGTCATT+TGG - chr1_2:44545784-44545803 Msa0072000:intron 25.0%
! GAAAAGTAATTTAGCAAAGA+AGG + chr1_2:44545815-44545834 None:intergenic 25.0%
! AAGAGAGAATAATAGGTTAA+GGG + chr1_2:44545992-44546011 None:intergenic 25.0%
!! TACTGAAAGTATATTCTAGA+AGG + chr1_2:44546015-44546034 None:intergenic 25.0%
! CCAGATAAAAAACAAAACAA+CGG - chr1_2:44546262-44546281 Msa0072000:intron 25.0%
! GTGAAAAAATTATGAGTGAA+GGG - chr1_2:44546284-44546303 Msa0072000:intron 25.0%
! GGAAAAATAAACAAAACAGA+GGG - chr1_2:44546421-44546440 Msa0072000:CDS 25.0%
! TAAAAAAAGCTTCAAAACAC+AGG + chr1_2:44546723-44546742 None:intergenic 25.0%
! CTTTACAAATCACATTCATT+TGG + chr1_2:44546893-44546912 None:intergenic 25.0%
! ATGTCAATGTATTTGTTCAA+AGG - chr1_2:44547127-44547146 Msa0072000:intron 25.0%
! ATCATCTGATAAATAGTTTC+GGG + chr1_2:44547262-44547281 None:intergenic 25.0%
! AAATATATTTCGCATAGCTA+TGG - chr1_2:44547311-44547330 Msa0072000:intron 25.0%
! AAATCTATGACTCATGTTTA+AGG - chr1_2:44547430-44547449 Msa0072000:intron 25.0%
! CTACAAAACTTCCATATTAA+GGG + chr1_2:44547473-44547492 None:intergenic 25.0%
! TATAAGTATACAATCACTGA+TGG + chr1_2:44547529-44547548 None:intergenic 25.0%
! CGTCTATAAATATAACATGA+AGG + chr1_2:44547938-44547957 None:intergenic 25.0%
!! AGAGAATTTCTTGTACATTT+TGG - chr1_2:44548211-44548230 Msa0072000:CDS 25.0%
! CTATTGATAAGGAGAAAATA+TGG - chr1_2:44548326-44548345 Msa0072000:intron 25.0%
!! AACAAAGTATAGCTTTACTT+TGG + chr1_2:44548496-44548515 None:intergenic 25.0%
! TGGTTTATGATAGAATACTA+TGG - chr1_2:44548626-44548645 Msa0072000:intron 25.0%
! AAAAAATATCTATCCCTAGT+GGG + chr1_2:44548748-44548767 None:intergenic 25.0%
! AAAAAAATATCTATCCCTAG+TGG + chr1_2:44548749-44548768 None:intergenic 25.0%
!!! TTTTTTTTTTTCTTCCAGCA+TGG - chr1_2:44548763-44548782 Msa0072000:intron 25.0%
! TTTGGATTCTTTATTGCTTT+AGG - chr1_2:44548995-44549014 Msa0072000:intron 25.0%
!! GTACATAATAAAAAGAGTAC+CGG + chr1_2:44549090-44549109 None:intergenic 25.0%
!! ATTACTATTGTTAGAGTACT+AGG - chr1_2:44549111-44549130 Msa0072000:intron 25.0%
! ACAAGACATTATGATGATAA+AGG + chr1_2:44549293-44549312 None:intergenic 25.0%
! TTATTACAGGTATCTTATTG+GGG - chr1_2:44549363-44549382 Msa0072000:intron 25.0%
!! GCATCAAAACATTACATTTT+TGG - chr1_2:44549961-44549980 Msa0072000:intron 25.0%
! ACTACAGCCATTATATAAAA+CGG + chr1_2:44550136-44550155 None:intergenic 25.0%
! TTGTTCATAAAAAGAATTGG+AGG - chr1_2:44550256-44550275 Msa0072000:CDS 25.0%
!!! TCTTAATGTGGTTTTAAATG+TGG - chr1_2:44550306-44550325 Msa0072000:CDS 25.0%
!!! CTTAATGTGGTTTTAAATGT+GGG - chr1_2:44550307-44550326 Msa0072000:CDS 25.0%
!!! TTTTTTCTACGGAATAATCA+CGG - chr1_2:44550436-44550455 Msa0072000:intron 25.0%
! GATGTATTTGAAAACTACTA+TGG + chr1_2:44550595-44550614 None:intergenic 25.0%
!!! TTCTTTCTTTTCTAGAGAAT+TGG + chr1_2:44550753-44550772 None:intergenic 25.0%
! AGAAAGAAAATCCAATCTAA+TGG - chr1_2:44550765-44550784 Msa0072000:intron 25.0%
!! AAAAATGTTTTCACAAGATC+TGG + chr1_2:44550949-44550968 None:intergenic 25.0%
! GAAATAATACACTACTGAAA+TGG + chr1_2:44551178-44551197 None:intergenic 25.0%
! AAAGAGGTTATGTACTTTAA+AGG + chr1_2:44551603-44551622 None:intergenic 25.0%
! AGAAGATATCAACATAAAGA+AGG + chr1_2:44551635-44551654 None:intergenic 25.0%
!!! TCTATTTTTTTTCCTGAAAG+TGG - chr1_2:44551652-44551671 Msa0072000:intron 25.0%
!!! CTATTTTTTTTCCTGAAAGT+GGG - chr1_2:44551653-44551672 Msa0072000:intron 25.0%
! TTTATCAACAAACACAATTC+AGG + chr1_2:44551714-44551733 None:intergenic 25.0%
!! ATAACCTTAATTGCCATTTA+GGG + chr1_2:44551886-44551905 None:intergenic 25.0%
!! TATAACCTTAATTGCCATTT+AGG + chr1_2:44551887-44551906 None:intergenic 25.0%
! TTGTCTACGAAAGATTAATT+TGG - chr1_2:44551912-44551931 Msa0072000:intron 25.0%
! CTAATTACTAGTACCAAAAT+GGG + chr1_2:44551977-44551996 None:intergenic 25.0%
! TCTAATTACTAGTACCAAAA+TGG + chr1_2:44551978-44551997 None:intergenic 25.0%
! ATGGCAAATATATGTTTGAA+AGG - chr1_2:44552008-44552027 Msa0072000:intron 25.0%
! TACTCTATTACAGGTTATTT+GGG + chr1_2:44552088-44552107 None:intergenic 25.0%
! ATAAAATTAAAGTAGCCGTT+AGG + chr1_2:44552123-44552142 None:intergenic 25.0%
! AATAATCATATGCAGTACTT+TGG - chr1_2:44552193-44552212 Msa0072000:CDS 25.0%
! TTTAAGCAAAGACATAAAAC+TGG + chr1_2:44552293-44552312 None:intergenic 25.0%
! TTAAAAGTCTTGGTGAAAAT+TGG - chr1_2:44552308-44552327 Msa0072000:intron 25.0%
! TAAAAGTCTTGGTGAAAATT+GGG - chr1_2:44552309-44552328 Msa0072000:intron 25.0%
! TAGAAAGAATGACAATGTAA+AGG - chr1_2:44552641-44552660 Msa0072000:intron 25.0%
! AAACAGAATAAAGTAGTAGT+TGG + chr1_2:44552721-44552740 None:intergenic 25.0%
!! CTACTACTTTATTCTGTTTT+AGG - chr1_2:44552722-44552741 Msa0072000:intron 25.0%
!! TTTTCACAAAAGATACGAAA+AGG + chr1_2:44552934-44552953 None:intergenic 25.0%
! GAGAAAGTTGAAAAATGTTA+GGG + chr1_2:44553343-44553362 None:intergenic 25.0%
! AGAGAAAGTTGAAAAATGTT+AGG + chr1_2:44553344-44553363 None:intergenic 25.0%
!! CACCGATATTTGATTATTTT+TGG + chr1_2:44553594-44553613 None:intergenic 25.0%
! GACACAACTAAGATTATATT+TGG - chr1_2:44553697-44553716 Msa0072000:intron 25.0%
!!! ACATCTAGTCACTTTTTTAA+AGG + chr1_2:44553758-44553777 None:intergenic 25.0%
!! AAAAAACCAGTTTTCTTGTT+GGG + chr1_2:44553992-44554011 None:intergenic 25.0%
!! TAAAAAACCAGTTTTCTTGT+TGG + chr1_2:44553993-44554012 None:intergenic 25.0%
!!! TCTTTGAGTTTTGAGTATTA+TGG - chr1_2:44554226-44554245 Msa0072000:intron 25.0%
!! CTCATTATTTTCTGATTGAT+AGG + chr1_2:44554392-44554411 None:intergenic 25.0%
! CTATCAATCAGAAAATAATG+AGG - chr1_2:44554390-44554409 Msa0072000:intron 25.0%
! CATGACATTATGTAATTATC+AGG + chr1_2:44554660-44554679 None:intergenic 25.0%
! CTGATAATTACATAATGTCA+TGG - chr1_2:44554658-44554677 Msa0072000:CDS 25.0%
! TTTGACAAACTAAAAGAAAC+GGG - chr1_2:44554943-44554962 Msa0072000:intron 25.0%
!!! GTTTTAAAAGACATGGAATA+GGG + chr1_2:44555079-44555098 None:intergenic 25.0%
!!! AGTTTTAAAAGACATGGAAT+AGG + chr1_2:44555080-44555099 None:intergenic 25.0%
!!! AAGTTTGCTACTTAATAAAC+AGG - chr1_2:44555194-44555213 Msa0072000:intron 25.0%
! ATTATAAGGATGAGATTGTA+AGG - chr1_2:44555923-44555942 Msa0072000:intron 25.0%
! TAAGATGTTTCTTACTAAGA+AGG - chr1_2:44556253-44556272 Msa0072000:intron 25.0%
! AAGTCATAATGTTTATACCA+GGG + chr1_2:44556354-44556373 None:intergenic 25.0%
! AAAGTCATAATGTTTATACC+AGG + chr1_2:44556355-44556374 None:intergenic 25.0%
! TTTGAACATCACATATCTTT+CGG + chr1_2:44556845-44556864 None:intergenic 25.0%
!!! TTTTGAAAGGATGACTAAAA+TGG - chr1_2:44557050-44557069 Msa0072000:intron 25.0%
! TTTGAAAGGATGACTAAAAT+GGG - chr1_2:44557051-44557070 Msa0072000:intron 25.0%
AGAAAAGAGTGAAATAGAGA+AGG + chr1_2:44541994-44542013 Msa0071990:intron 30.0%
CCTTAACGGAAGAAAATTAT+TGG + chr1_2:44542115-44542134 Msa0071990:intron 30.0%
! CCAATAATTTTCTTCCGTTA+AGG - chr1_2:44542112-44542131 Msa0072000:three_prime_UTR 30.0%
! GAGAAATGGATTTACCTTAA+CGG + chr1_2:44542129-44542148 Msa0071990:intron 30.0%
!! TAAGCTAGGTTTACTTTTAC+TGG - chr1_2:44542299-44542318 Msa0072000:three_prime_UTR 30.0%
!!! TTAACACTACCCTTTTTTGT+AGG - chr1_2:44542440-44542459 Msa0072000:three_prime_UTR 30.0%
CCTGAATTACCTACAAAAAA+GGG + chr1_2:44542452-44542471 Msa0071990:CDS 30.0%
ACCTGAATTACCTACAAAAA+AGG + chr1_2:44542453-44542472 Msa0071990:CDS 30.0%
!! TATCAAATCAACTTGTTGGT+TGG - chr1_2:44542571-44542590 Msa0072000:three_prime_UTR 30.0%
! TATAGGACCTATTTTACTGA+CGG + chr1_2:44542664-44542683 None:intergenic 30.0%
TAATAGCAATTGGGAATAGA+CGG + chr1_2:44542693-44542712 None:intergenic 30.0%
ATATCCACTAATTCAACTGA+AGG + chr1_2:44542748-44542767 None:intergenic 30.0%
AAAATGGATAGGTTGTTAGA+TGG - chr1_2:44542786-44542805 Msa0072000:CDS 30.0%
TTCTCAATCTAAGAAGAATG+AGG - chr1_2:44542835-44542854 Msa0072000:intron 30.0%
ATAATATAACGGTAAAACGC+GGG + chr1_2:44542910-44542929 None:intergenic 30.0%
! ATCTAGATTTTACGCATGAT+TGG + chr1_2:44543670-44543689 None:intergenic 30.0%
TAAGCATTTATGAGACTGTT+TGG - chr1_2:44543901-44543920 Msa0072000:intron 30.0%
AAGCATTTATGAGACTGTTT+GGG - chr1_2:44543902-44543921 Msa0072000:intron 30.0%
GAGCTTATGAAAATAGCTTA+TGG - chr1_2:44543926-44543945 Msa0072000:CDS 30.0%
AACTTATTTCCACAAGCTTT+AGG - chr1_2:44543974-44543993 Msa0072000:CDS 30.0%
! TGTTTTCAACTTATTTCCAC+AGG - chr1_2:44544038-44544057 Msa0072000:CDS 30.0%
CTATAAGTGCTTAGTTAATC+TGG - chr1_2:44544247-44544266 Msa0072000:intron 30.0%
GTTAATCTGGTTATTCAAAC+AGG - chr1_2:44544260-44544279 Msa0072000:intron 30.0%
GTTTCTAATTGCAAGTCATT+TGG - chr1_2:44544374-44544393 Msa0072000:CDS 30.0%
TGCCTACTATTTAGTAAATG+GGG - chr1_2:44544464-44544483 Msa0072000:intron 30.0%
!!! CATTTTTTCAAGGTTAGTAC+TGG + chr1_2:44544666-44544685 None:intergenic 30.0%
GTACTAACCTTGAAAAAATG+AGG - chr1_2:44544666-44544685 Msa0072000:intron 30.0%
!!! ATTTCACCCTCATTTTTTCA+AGG + chr1_2:44544676-44544695 None:intergenic 30.0%
! GAAGATGAAGACTTTTATGA+TGG - chr1_2:44544710-44544729 Msa0072000:intron 30.0%
AAAAATATGCAGCAATGTTC+AGG - chr1_2:44545100-44545119 Msa0072000:intron 30.0%
AAGCAATAATGTCAATCTGT+TGG + chr1_2:44545609-44545628 None:intergenic 30.0%
TGTTATTAAATGTCCAGCTT+GGG - chr1_2:44545718-44545737 Msa0072000:intron 30.0%
GAAGAGAGAATAATAGGTTA+AGG + chr1_2:44545993-44546012 None:intergenic 30.0%
TAGAAGGAAGAGAGAATAAT+AGG + chr1_2:44545999-44546018 None:intergenic 30.0%
! ACGAATTTGCATAGACTTTT+GGG + chr1_2:44546084-44546103 None:intergenic 30.0%
! TCTTTGCTTTATTATGGAGT+TGG + chr1_2:44546236-44546255 None:intergenic 30.0%
!!! CCGTTGTTTTGTTTTTTATC+TGG + chr1_2:44546265-44546284 None:intergenic 30.0%
GGTGAAAAAATTATGAGTGA+AGG - chr1_2:44546283-44546302 Msa0072000:intron 30.0%
AAAAATTATGAGTGAAGGGA+AGG - chr1_2:44546288-44546307 Msa0072000:intron 30.0%
CAATAAAAGAACTGAGATAC+TGG - chr1_2:44546365-44546384 Msa0072000:intron 30.0%
GGGAAAAATAAACAAAACAG+AGG - chr1_2:44546420-44546439 Msa0072000:CDS 30.0%
AATAAACAAAACAGAGGGTT+AGG - chr1_2:44546426-44546445 Msa0072000:CDS 30.0%
ATAAACAAAACAGAGGGTTA+GGG - chr1_2:44546427-44546446 Msa0072000:CDS 30.0%
GTTCTCTTCATTTATACTAG+GGG + chr1_2:44546624-44546643 None:intergenic 30.0%
CGTTCTCTTCATTTATACTA+GGG + chr1_2:44546625-44546644 None:intergenic 30.0%
TCGTTCTCTTCATTTATACT+AGG + chr1_2:44546626-44546645 None:intergenic 30.0%
!! AGAATTTTGTTTGCCATACT+CGG + chr1_2:44546804-44546823 None:intergenic 30.0%
!! AGATTTTAGGTAGCCAAATA+TGG + chr1_2:44546840-44546859 None:intergenic 30.0%
AATGTTGAGATATGATCAAC+TGG + chr1_2:44546985-44547004 None:intergenic 30.0%
! AGCATATAATAAGGAGTACA+CGG + chr1_2:44547067-44547086 None:intergenic 30.0%
TTCACTTGCAGCATATAATA+AGG + chr1_2:44547076-44547095 None:intergenic 30.0%
TCAATGTATTTGTTCAAAGG+AGG - chr1_2:44547130-44547149 Msa0072000:intron 30.0%
GGTCTATTATAAAACACACA+GGG + chr1_2:44547234-44547253 None:intergenic 30.0%
TGGTCTATTATAAAACACAC+AGG + chr1_2:44547235-44547254 None:intergenic 30.0%
GCTACAAAACTTCCATATTA+AGG + chr1_2:44547474-44547493 None:intergenic 30.0%
!! TAATATGGAAGTTTTGTAGC+AGG - chr1_2:44547474-44547493 Msa0072000:intron 30.0%
AATACGAGCGAATCAAATAT+TGG + chr1_2:44547570-44547589 None:intergenic 30.0%
! GCAACATTTACACAAGTTTT+AGG + chr1_2:44547678-44547697 None:intergenic 30.0%
AACTTGTGTAAATGTTGCAT+TGG - chr1_2:44547680-44547699 Msa0072000:intron 30.0%
TCCTTTGTCAATAAGTTTGA+AGG - chr1_2:44547820-44547839 Msa0072000:CDS 30.0%
CCTTTGTCAATAAGTTTGAA+GGG - chr1_2:44547821-44547840 Msa0072000:CDS 30.0%
CTTTGTCAATAAGTTTGAAG+GGG - chr1_2:44547822-44547841 Msa0072000:CDS 30.0%
AAAGAAAACATACAGAGCAA+TGG + chr1_2:44547866-44547885 None:intergenic 30.0%
!!! ATAATTTTGACTGAATTCCC+AGG - chr1_2:44547969-44547988 Msa0072000:intron 30.0%
GAATTATAAGCTTGACTTAC+AGG + chr1_2:44548169-44548188 None:intergenic 30.0%
!! TTCAGAAGAGGTTATTTTCT+GGG - chr1_2:44548273-44548292 Msa0072000:intron 30.0%
!! TTTTGAAAACACTGTGGTTT+TGG - chr1_2:44548394-44548413 Msa0072000:intron 30.0%
! TAATGAGTTGAACCGAAATA+TGG - chr1_2:44548606-44548625 Msa0072000:intron 30.0%
! GTTGTTGTTGTATTGACATT+TGG - chr1_2:44548705-44548724 Msa0072000:intron 30.0%
GATTCAATTGAATGTTAGCA+TGG - chr1_2:44548943-44548962 Msa0072000:intron 30.0%
! AAGTACACGAACATTTCTTT+TGG - chr1_2:44549021-44549040 Msa0072000:intron 30.0%
AAATCTTCAATTGGATCATC+GGG + chr1_2:44549064-44549083 None:intergenic 30.0%
GAAATCTTCAATTGGATCAT+CGG + chr1_2:44549065-44549084 None:intergenic 30.0%
ATCCAATTGAAGATTTCATC+CGG - chr1_2:44549068-44549087 Msa0072000:intron 30.0%
!! ACTAGGTGTCTTATTGTTTT+AGG - chr1_2:44549128-44549147 Msa0072000:intron 30.0%
!!! TGTCATGAATAGTTTTTGGT+TGG - chr1_2:44549153-44549172 Msa0072000:intron 30.0%
!!! GTCATGAATAGTTTTTGGTT+GGG - chr1_2:44549154-44549173 Msa0072000:intron 30.0%
GGTCAGATGATTGTATATAT+AGG - chr1_2:44549204-44549223 Msa0072000:intron 30.0%
TATTACAGGTATCTTATTGG+GGG - chr1_2:44549364-44549383 Msa0072000:intron 30.0%
TTCATATCAATTGTATGTCG+AGG - chr1_2:44549423-44549442 Msa0072000:intron 30.0%
TATGTCGAGGTTAGTATTTA+TGG - chr1_2:44549436-44549455 Msa0072000:CDS 30.0%
AATGCAAAAAAGACTGTAGA+TGG + chr1_2:44549900-44549919 None:intergenic 30.0%
!!! AGTCTTTTTTGCATTCCATT+AGG - chr1_2:44549905-44549924 Msa0072000:CDS 30.0%
!!! ATGTTTTGATGCATGAATCA+TGG + chr1_2:44549953-44549972 None:intergenic 30.0%
TAGAAGCTAAAGTAAAGTTG+AGG + chr1_2:44550338-44550357 None:intergenic 30.0%
! TTATCCTACAAATGCTCTTT+TGG - chr1_2:44550406-44550425 Msa0072000:intron 30.0%
!!! TTGGTGGATACTTTTTTCTA+CGG - chr1_2:44550425-44550444 Msa0072000:intron 30.0%
!! AAGATGGATTGAAGACAAAA+TGG - chr1_2:44550493-44550512 Msa0072000:intron 30.0%
! AACTTAGAGGTTGATCAAAA+CGG - chr1_2:44550648-44550667 Msa0072000:intron 30.0%
ATCGATATGTCAGTAAGATT+TGG - chr1_2:44550716-44550735 Msa0072000:intron 30.0%
! ATATGTCAGTAAGATTTGGT+TGG - chr1_2:44550720-44550739 Msa0072000:intron 30.0%
TAAACGCATTTCCATTAGAT+TGG + chr1_2:44550779-44550798 None:intergenic 30.0%
TGATTGGAATTAGAAACTGT+TGG + chr1_2:44550975-44550994 None:intergenic 30.0%
TTAATGCAGAGATAAGACAT+TGG - chr1_2:44551021-44551040 Msa0072000:CDS 30.0%
!! TTTTATCGTTGACTGAATTG+TGG + chr1_2:44551083-44551102 None:intergenic 30.0%
!!! TATTTTTTCCAAGTCAGAAC+AGG + chr1_2:44551434-44551453 None:intergenic 30.0%
!! GTTCTGACTTGGAAAAAATA+CGG - chr1_2:44551434-44551453 Msa0072000:intron 30.0%
ATTATACCAGGAATTGGTAA+AGG + chr1_2:44551561-44551580 None:intergenic 30.0%
CAATTCAGGACATGATTATT+TGG + chr1_2:44551700-44551719 None:intergenic 30.0%
ATTGACTGATCAACATAACA+GGG - chr1_2:44551739-44551758 Msa0072000:intron 30.0%
AACCAGATAATAATCAGTGA+TGG - chr1_2:44551766-44551785 Msa0072000:intron 30.0%
ACCAGATAATAATCAGTGAT+GGG - chr1_2:44551767-44551786 Msa0072000:intron 30.0%
! TAACCTTAATTGCCATTTAG+GGG + chr1_2:44551885-44551904 None:intergenic 30.0%
! TCTACGAAAGATTAATTTGG+TGG - chr1_2:44551915-44551934 Msa0072000:intron 30.0%
GTAATTAGAAACCAAAACGA+TGG - chr1_2:44551989-44552008 Msa0072000:intron 30.0%
! ACATATATTTGCCATCGTTT+TGG + chr1_2:44552003-44552022 None:intergenic 30.0%
GTACTCTATTACAGGTTATT+TGG + chr1_2:44552089-44552108 None:intergenic 30.0%
TTTATAAATACAATACGCGG+TGG - chr1_2:44552138-44552157 Msa0072000:intron 30.0%
TATTCTTCACATACATACTC+TGG + chr1_2:44552177-44552196 None:intergenic 30.0%
!! GTACTTTGGAGTAAAATATG+AGG - chr1_2:44552207-44552226 Msa0072000:CDS 30.0%
TGGAGTAAAATATGAGGATT+AGG - chr1_2:44552213-44552232 Msa0072000:CDS 30.0%
AAGAAGGCAAAATCTATGTT+CGG + chr1_2:44552267-44552286 None:intergenic 30.0%
ATGTCTTTGCTTAAAAGTCT+TGG - chr1_2:44552298-44552317 Msa0072000:intron 30.0%
TACAAGTTTAGTAGTATGCA+TGG - chr1_2:44552332-44552351 Msa0072000:intron 30.0%
!!! TTGTTGTTTGCTTTTTTCCA+TGG - chr1_2:44552358-44552377 Msa0072000:intron 30.0%
GAAGTAATGTGAGTTATACT+TGG - chr1_2:44552423-44552442 Msa0072000:intron 30.0%
AAAGAATGACAATGTAAAGG+TGG - chr1_2:44552644-44552663 Msa0072000:intron 30.0%
!!! TGTGTCTTTTTCAGACAAAT+TGG - chr1_2:44552790-44552809 Msa0072000:intron 30.0%
GTAAAAATATGCTTGATTGG+TGG - chr1_2:44553102-44553121 Msa0072000:intron 30.0%
!! AGCCGCTATTTGATTTTATT+AGG - chr1_2:44553287-44553306 Msa0072000:intron 30.0%
!! AGGAAATTTAGGGTATTTTG+AGG - chr1_2:44553307-44553326 Msa0072000:intron 30.0%
CTCTTCTATCTTCTATCTTA+TGG - chr1_2:44553389-44553408 Msa0072000:intron 30.0%
TATACCAGTATGACAAATAG+CGG + chr1_2:44553618-44553637 None:intergenic 30.0%
!! TTGGTTTTCAGTATAGTTGT+AGG - chr1_2:44553716-44553735 Msa0072000:intron 30.0%
! TCTTGAGATAGGTTTTTGTT+AGG + chr1_2:44553908-44553927 None:intergenic 30.0%
! AAAAACCAGTTTTCTTGTTG+GGG + chr1_2:44553991-44554010 None:intergenic 30.0%
GACTTTATCTTACAAACTAG+AGG - chr1_2:44554563-44554582 Msa0072000:CDS 30.0%
TTACTAGGATTCATGTACAA+TGG + chr1_2:44554604-44554623 None:intergenic 30.0%
TGTACATGAATCCTAGTAAA+TGG - chr1_2:44554605-44554624 Msa0072000:CDS 30.0%
GCTAAAGTAGTCAATACAAA+TGG + chr1_2:44554774-44554793 None:intergenic 30.0%
TGTGTTTATATTGCTTTGAC+AGG - chr1_2:44554822-44554841 Msa0072000:CDS 30.0%
! GTCTGACATTTTTCTTTGTT+TGG - chr1_2:44554980-44554999 Msa0072000:intron 30.0%
AGTCAATTCATCACCTATTA+AGG + chr1_2:44555286-44555305 None:intergenic 30.0%
TAAAAGAACCTTAACTGACA+TGG - chr1_2:44555326-44555345 Msa0072000:intron 30.0%
!!! CAATTTTGATTTGCCAACTT+AGG + chr1_2:44555584-44555603 None:intergenic 30.0%
AAAAAAAAGGAAGGAGTAAG+TGG - chr1_2:44555863-44555882 Msa0072000:intron 30.0%
ATCTCATCCTTATAATCTAG+TGG + chr1_2:44555919-44555938 None:intergenic 30.0%
ATAAGGAGCAGAAAAATGAA+AGG + chr1_2:44556128-44556147 None:intergenic 30.0%
GCTCCTTATAAATATTGAAG+CGG - chr1_2:44556139-44556158 Msa0072000:intron 30.0%
GTTCCGCTTCAATATTTATA+AGG + chr1_2:44556145-44556164 None:intergenic 30.0%
AATATTGAAGCGGAACAAAA+TGG - chr1_2:44556149-44556168 Msa0072000:intron 30.0%
! TTCTCTCGTTTACATTTTCT+AGG + chr1_2:44556183-44556202 None:intergenic 30.0%
ATGGATGAAGTTAAATGATC+AGG - chr1_2:44556567-44556586 Msa0072000:intron 30.0%
ACAAAACTTAACATTCTTCC+TGG - chr1_2:44556615-44556634 Msa0072000:intron 30.0%
ATATTTCTTAGAGAGGAGTT+GGG - chr1_2:44556696-44556715 Msa0072000:intron 30.0%
GTTGTAAAAGAGATGCAATA+TGG + chr1_2:44556886-44556905 None:intergenic 30.0%
AAAATTGAGCTAAAGTCATG+TGG + chr1_2:44557319-44557338 None:intergenic 30.0%
GTTTAAACTTCCTCAAATTC+TGG - chr1_2:44557341-44557360 Msa0072000:five_prime_UTR 30.0%
TTTCTTCTTCATCCGTTACA+TGG - chr1_2:44542071-44542090 Msa0072000:three_prime_UTR 35.0%
GAGATTTAACTGCCATGTAA+CGG + chr1_2:44542086-44542105 Msa0071990:intron 35.0%
AAAGCAGAAGGATAGAGAAA+TGG + chr1_2:44542143-44542162 Msa0071990:intron 35.0%
!! TTCTAGCTTCAGTTAGTAGA+CGG - chr1_2:44542207-44542226 Msa0072000:three_prime_UTR 35.0%
!!! CCCTTTTTTGTAGGTAATTC+AGG - chr1_2:44542449-44542468 Msa0072000:three_prime_UTR 35.0%
CTTTAATCATATACTCGTGG+AGG + chr1_2:44542516-44542535 Msa0071990:CDS 35.0%
! ATAGGACCTATTTTACTGAC+GGG + chr1_2:44542663-44542682 None:intergenic 35.0%
TTCTCCTTCAGTTGAATTAG+TGG - chr1_2:44542741-44542760 Msa0072000:CDS 35.0%
TCAATCTAAGAAGAATGAGG+TGG - chr1_2:44542838-44542857 Msa0072000:intron 35.0%
CAATCTAAGAAGAATGAGGT+GGG - chr1_2:44542839-44542858 Msa0072000:intron 35.0%
TGTCGTAGATTCAAATCCTA+CGG + chr1_2:44542873-44542892 None:intergenic 35.0%
AGGATTTGAATCTACGACAT+TGG - chr1_2:44542874-44542893 Msa0072000:intron 35.0%
GGATTTGAATCTACGACATT+GGG - chr1_2:44542875-44542894 Msa0072000:intron 35.0%
ATGCTAGTCACATTCATTGT+GGG + chr1_2:44543095-44543114 None:intergenic 35.0%
! TAGGCAAAATCTTCTTTTGG+TGG - chr1_2:44543216-44543235 Msa0072000:intron 35.0%
TGATTCTATGATTATGGTCG+CGG - chr1_2:44543268-44543287 Msa0072000:intron 35.0%
! GATTTTACGCATGATTGGTA+AGG + chr1_2:44543665-44543684 None:intergenic 35.0%
GGTGTAAGAAAAACTCAGAT+TGG - chr1_2:44543710-44543729 Msa0072000:intron 35.0%
! GTTTCAAATAACGGAACCTA+AGG + chr1_2:44543749-44543768 None:intergenic 35.0%
ATTATAGGTTACGAAGCTAC+AGG - chr1_2:44543817-44543836 Msa0072000:intron 35.0%
TTATGGCATGTTCATGTCAT+AGG - chr1_2:44543943-44543962 Msa0072000:CDS 35.0%
AGCAACTTATGACATGTTCA+TGG - chr1_2:44544008-44544027 Msa0072000:CDS 35.0%
!! GCTATTTTCATAAGCTATCC+TGG + chr1_2:44544144-44544163 None:intergenic 35.0%
TGCCCCATTTACTAAATAGT+AGG + chr1_2:44544469-44544488 None:intergenic 35.0%
ATACACGTGACGATGATTTA+TGG + chr1_2:44544790-44544809 None:intergenic 35.0%
! GCAATGTTCAGGTTAGTTAT+TGG - chr1_2:44545111-44545130 Msa0072000:intron 35.0%
TTAAGTTATCGCAGATGAGT+TGG + chr1_2:44545205-44545224 None:intergenic 35.0%
!! AACCGAAAGGCATTACTTTA+TGG - chr1_2:44545329-44545348 Msa0072000:intron 35.0%
TGCCATAAAGTAATGCCTTT+CGG + chr1_2:44545334-44545353 None:intergenic 35.0%
CCATTACATCACTACTGAAT+TGG + chr1_2:44545386-44545405 None:intergenic 35.0%
CCAATTCAGTAGTGATGTAA+TGG - chr1_2:44545383-44545402 Msa0072000:intron 35.0%
CACATTGATAAGCAGTTATG+TGG + chr1_2:44545435-44545454 None:intergenic 35.0%
CATAACTGCTTATCAATGTG+CGG - chr1_2:44545435-44545454 Msa0072000:intron 35.0%
TCCTAATTAAGTAGGTCCTT+TGG - chr1_2:44545504-44545523 Msa0072000:intron 35.0%
AAAAATTGGTATCTGGCCAA+AGG + chr1_2:44545523-44545542 None:intergenic 35.0%
GCTGGACATTTAATAACAGA+CGG + chr1_2:44545716-44545735 None:intergenic 35.0%
CTGTTATTAAATGTCCAGCT+TGG - chr1_2:44545717-44545736 Msa0072000:intron 35.0%
GTTATTAAATGTCCAGCTTG+GGG - chr1_2:44545719-44545738 Msa0072000:intron 35.0%
ACTCGAGTCACAGTATTTAA+AGG - chr1_2:44545911-44545930 Msa0072000:intron 35.0%
! ATCAGTCTAGGTTGAATGTT+AGG + chr1_2:44545943-44545962 None:intergenic 35.0%
ACCTAGACTGATAGTATAAC+TGG - chr1_2:44545951-44545970 Msa0072000:intron 35.0%
ACCAGTTATACTATCAGTCT+AGG + chr1_2:44545955-44545974 None:intergenic 35.0%
! CTTTCAGTATTGAAACGTCT+CGG - chr1_2:44546026-44546045 Msa0072000:intron 35.0%
!!! ACTTTTGGGTTTGACAACTT+TGG + chr1_2:44546070-44546089 None:intergenic 35.0%
! CACGAATTTGCATAGACTTT+TGG + chr1_2:44546085-44546104 None:intergenic 35.0%
CAAAAGTCTATGCAAATTCG+TGG - chr1_2:44546083-44546102 Msa0072000:intron 35.0%
TCTAACAAATTTGCGAGTCT+TGG + chr1_2:44546134-44546153 None:intergenic 35.0%
ATTTAAACTGAGGAAGCAGA+AGG - chr1_2:44546311-44546330 Msa0072000:intron 35.0%
TTTAAACTGAGGAAGCAGAA+GGG - chr1_2:44546312-44546331 Msa0072000:intron 35.0%
ATACTGGTATCTGTTTGAGT+GGG - chr1_2:44546381-44546400 Msa0072000:intron 35.0%
TGGGTTTGATCTTCAAATGA+GGG - chr1_2:44546400-44546419 Msa0072000:intron 35.0%
! CTTCTGCATTTGAAACTCAA+GGG + chr1_2:44546456-44546475 None:intergenic 35.0%
! ACTTCTGCATTTGAAACTCA+AGG + chr1_2:44546457-44546476 None:intergenic 35.0%
TTGAGTTTCAAATGCAGAAG+TGG - chr1_2:44546456-44546475 Msa0072000:CDS 35.0%
TTCTATCTCTGCTATCATCT+CGG + chr1_2:44547107-44547126 None:intergenic 35.0%
CTTGTGTTGTACCCTTAATA+TGG - chr1_2:44547459-44547478 Msa0072000:intron 35.0%
CCCTTCAAACTTATTGACAA+AGG + chr1_2:44547824-44547843 None:intergenic 35.0%
ATTGCTGCAATTGCTAAACT+TGG - chr1_2:44548058-44548077 Msa0072000:intron 35.0%
TGAGATAACTGGTAGTTTGA+TGG - chr1_2:44548123-44548142 Msa0072000:intron 35.0%
!!! TTTTAGAGCAAACGTTGAGT+GGG - chr1_2:44548249-44548268 Msa0072000:CDS 35.0%
!! GTTCAGAAGAGGTTATTTTC+TGG - chr1_2:44548272-44548291 Msa0072000:intron 35.0%
!! GGTTATTTTCTGGGTAAATC+TGG - chr1_2:44548282-44548301 Msa0072000:intron 35.0%
!!! GTTCAGTTTTGAAAACACTG+TGG - chr1_2:44548388-44548407 Msa0072000:intron 35.0%
TGATGTTGGATTGAATGTCA+AGG - chr1_2:44548428-44548447 Msa0072000:intron 35.0%
TCATTACTTTCTATCCCACT+AGG - chr1_2:44548731-44548750 Msa0072000:intron 35.0%
CATTACTTTCTATCCCACTA+GGG - chr1_2:44548732-44548751 Msa0072000:intron 35.0%
!!! TTTTTTTTCTTCCAGCATGG+AGG - chr1_2:44548766-44548785 Msa0072000:intron 35.0%
ATTGAATGTTAGCATGGTAC+AGG - chr1_2:44548949-44548968 Msa0072000:intron 35.0%
GAGAAGGATTTGGCTATATT+TGG - chr1_2:44548977-44548996 Msa0072000:intron 35.0%
! CGAACATTTCTTTTGGCAAA+TGG - chr1_2:44549028-44549047 Msa0072000:intron 35.0%
TACCGGATGAAATCTTCAAT+TGG + chr1_2:44549073-44549092 None:intergenic 35.0%
!! GGAGTGTCATGAATAGTTTT+TGG - chr1_2:44549149-44549168 Msa0072000:intron 35.0%
CTAGTTGTACTACTAGCATT+TGG - chr1_2:44549183-44549202 Msa0072000:intron 35.0%
!! ATAAAGGTGCTTAAGTTGCT+GGG + chr1_2:44549277-44549296 None:intergenic 35.0%
! AACTAATGGATGAGAGTTGA+GGG + chr1_2:44549405-44549424 None:intergenic 35.0%
AGCATACATCGTTAAATGCA+AGG + chr1_2:44549463-44549482 None:intergenic 35.0%
!! CATTTGCTGTTTGCTCTTAT+TGG - chr1_2:44549646-44549665 Msa0072000:CDS 35.0%
GCTTTATCAAATACAGCACA+TGG - chr1_2:44549676-44549695 Msa0072000:CDS 35.0%
!!! TCAGCTGCTTTTACATTTGA+AGG + chr1_2:44549711-44549730 None:intergenic 35.0%
TCAGCAACATCATGTTCATT+TGG - chr1_2:44550010-44550029 Msa0072000:intron 35.0%
TATATAAAACGGCTACACGT+GGG + chr1_2:44550125-44550144 None:intergenic 35.0%
TTATATAAAACGGCTACACG+TGG + chr1_2:44550126-44550145 None:intergenic 35.0%
!! CGTGTAGCCGTTTTATATAA+TGG - chr1_2:44550126-44550145 Msa0072000:intron 35.0%
TTACCACTACAGCTGTTATT+TGG + chr1_2:44550173-44550192 None:intergenic 35.0%
! CAACCATGAATGCCAATTTT+GGG + chr1_2:44550222-44550241 None:intergenic 35.0%
! ACAACCATGAATGCCAATTT+TGG + chr1_2:44550223-44550242 None:intergenic 35.0%
TGGTTGTTCTTGTCTTAATG+TGG - chr1_2:44550294-44550313 Msa0072000:CDS 35.0%
CTCAATACGAAATTCGAAAC+TGG - chr1_2:44550375-44550394 Msa0072000:intron 35.0%
! CATCGCTACTCTAAAAAAGA+TGG - chr1_2:44550477-44550496 Msa0072000:intron 35.0%
AAAGTCGATACAATCCTTTC+AGG - chr1_2:44550620-44550639 Msa0072000:intron 35.0%
CTCTAAGTTCATTTCCTGAA+AGG + chr1_2:44550637-44550656 None:intergenic 35.0%
CTTTCAGGAAATGAACTTAG+AGG - chr1_2:44550635-44550654 Msa0072000:intron 35.0%
ACAGTACAAGACATTTAGCT+TGG + chr1_2:44550865-44550884 None:intergenic 35.0%
AAGCTAAATGTCTTGTACTG+TGG - chr1_2:44550864-44550883 Msa0072000:intron 35.0%
ATAATAGGTGGCACAATGAT+TGG + chr1_2:44550991-44551010 None:intergenic 35.0%
GATGCCAAGAAAATAGTTGA+CGG - chr1_2:44551049-44551068 Msa0072000:CDS 35.0%
ATGCCAAGAAAATAGTTGAC+GGG - chr1_2:44551050-44551069 Msa0072000:CDS 35.0%
AATACACTACTGAAATGGAG+AGG + chr1_2:44551173-44551192 None:intergenic 35.0%
TAAGAAAGAAGCTGAATTCC+TGG - chr1_2:44551462-44551481 Msa0072000:CDS 35.0%
CACACTATTATACCAGGAAT+TGG + chr1_2:44551567-44551586 None:intergenic 35.0%
CTTTGACACACTATTATACC+AGG + chr1_2:44551573-44551592 None:intergenic 35.0%
! CTGAAAGTGGGAATCTTTTT+CGG - chr1_2:44551665-44551684 Msa0072000:intron 35.0%
TTCAGGACATGATTATTTGG+AGG + chr1_2:44551697-44551716 None:intergenic 35.0%
GATTGACTGATCAACATAAC+AGG - chr1_2:44551738-44551757 Msa0072000:intron 35.0%
CCAGATAATAATCAGTGATG+GGG - chr1_2:44551768-44551787 Msa0072000:intron 35.0%
! ATGGGGTTTGATAATAACGT+AGG - chr1_2:44551785-44551804 Msa0072000:intron 35.0%
AAAACAAATTGGCCCCTAAA+TGG - chr1_2:44551870-44551889 Msa0072000:intron 35.0%
! CGAAAGATTAATTTGGTGGA+TGG - chr1_2:44551919-44551938 Msa0072000:intron 35.0%
ATAAACGGGTACTCTATTAC+AGG + chr1_2:44552097-44552116 None:intergenic 35.0%
GTACCCGTTTATTAACCTAA+CGG - chr1_2:44552105-44552124 Msa0072000:intron 35.0%
TAGCCGTTAGGTTAATAAAC+GGG + chr1_2:44552111-44552130 None:intergenic 35.0%
GTAGCCGTTAGGTTAATAAA+CGG + chr1_2:44552112-44552131 None:intergenic 35.0%
AGAAGGCAAAATCTATGTTC+GGG + chr1_2:44552266-44552285 None:intergenic 35.0%
ACTGAATATTTGCTTGCCAA+TGG - chr1_2:44552531-44552550 Msa0072000:intron 35.0%
!! GAGTTTAATAGAAGCACCAT+TGG + chr1_2:44552550-44552569 None:intergenic 35.0%
TGCTTCTATTAAACTCATGC+AGG - chr1_2:44552554-44552573 Msa0072000:intron 35.0%
GCTTCTATTAAACTCATGCA+GGG - chr1_2:44552555-44552574 Msa0072000:intron 35.0%
!! TCTGGTTAGCTCTATGTAAA+TGG - chr1_2:44552757-44552776 Msa0072000:intron 35.0%
AGACAAATTGGAAAATCTCG+TGG - chr1_2:44552802-44552821 Msa0072000:intron 35.0%
ATCAACATCGTCAAATGATG+AGG + chr1_2:44552909-44552928 None:intergenic 35.0%
!!! TGTTCCTGTCTTGTGTTTTT+TGG - chr1_2:44553440-44553459 Msa0072000:intron 35.0%
AACACCAAAAAACACAAGAC+AGG + chr1_2:44553447-44553466 None:intergenic 35.0%
! GTTTTCAGTATAGTTGTAGG+TGG - chr1_2:44553719-44553738 Msa0072000:intron 35.0%
! GGTTAGTTATGAACTGGATT+TGG - chr1_2:44553841-44553860 Msa0072000:intron 35.0%
! CTCGCTTGCAAATAAGTTTT+TGG + chr1_2:44554060-44554079 None:intergenic 35.0%
TTTGCAAGCGAGAATTCTAT+AGG - chr1_2:44554068-44554087 Msa0072000:intron 35.0%
CCAGTTTATGCGTGATTATT+AGG + chr1_2:44554134-44554153 None:intergenic 35.0%
CCTAATAATCACGCATAAAC+TGG - chr1_2:44554131-44554150 Msa0072000:intron 35.0%
TCAAAGCGAAGGATTTCATT+GGG + chr1_2:44554319-44554338 None:intergenic 35.0%
TTTGAATTAGACGACTCACA+AGG - chr1_2:44554426-44554445 Msa0072000:intron 35.0%
! TTTCAAGTGAAGTGGACATT+AGG + chr1_2:44554522-44554541 None:intergenic 35.0%
ATGTCCACTTCACTTGAAAA+AGG - chr1_2:44554523-44554542 Msa0072000:CDS 35.0%
! GATTTGATGATCAGTGATGA+TGG - chr1_2:44554844-44554863 Msa0072000:CDS 35.0%
CAAACTAAAAGAAACGGGAA+CGG - chr1_2:44554948-44554967 Msa0072000:intron 35.0%
ACTCATCTGCTTTATGACAT+TGG - chr1_2:44555024-44555043 Msa0072000:intron 35.0%
ATCTGCTTTATGACATTGGT+CGG - chr1_2:44555028-44555047 Msa0072000:intron 35.0%
AATAAACAGGATGTCTTGCA+AGG - chr1_2:44555207-44555226 Msa0072000:intron 35.0%
!! CAACTTCTTGCTATTGATGT+TGG - chr1_2:44555234-44555253 Msa0072000:intron 35.0%
TTGGTCAAAAGGACCTTAAT+AGG - chr1_2:44555270-44555289 Msa0072000:intron 35.0%
!! AGAAGCATTAAAATGCCGAT+AGG + chr1_2:44555363-44555382 None:intergenic 35.0%
!! CATAAAGGTGTTCAACTTAC+AGG + chr1_2:44555387-44555406 None:intergenic 35.0%
CTGAATAATATGTCCTGTTC+TGG - chr1_2:44555427-44555446 Msa0072000:intron 35.0%
GTGTATGCTTCCAACATAAA+TGG - chr1_2:44555668-44555687 Msa0072000:intron 35.0%
AATCATGCAGCCATTTATGT+TGG + chr1_2:44555681-44555700 None:intergenic 35.0%
ACATAAATGGCTGCATGATT+AGG - chr1_2:44555681-44555700 Msa0072000:intron 35.0%
CAAAGATGTAGTAGACCTTA+AGG - chr1_2:44555797-44555816 Msa0072000:intron 35.0%
GGGTTTGGAAAAAAAAAGGA+AGG - chr1_2:44555854-44555873 Msa0072000:intron 35.0%
CCTTATAATCTAGTGGTCAT+GGG + chr1_2:44555912-44555931 None:intergenic 35.0%
TCCTTATAATCTAGTGGTCA+TGG + chr1_2:44555913-44555932 None:intergenic 35.0%
AAGAATGAGATTATGAGCCT+TGG + chr1_2:44555969-44555988 None:intergenic 35.0%
CTAACATGTCCATGTATACA+AGG - chr1_2:44556053-44556072 Msa0072000:intron 35.0%
GTACATTGTCCTTGTATACA+TGG + chr1_2:44556065-44556084 None:intergenic 35.0%
TGTAAACGAGAGAAGATAGA+AGG - chr1_2:44556189-44556208 Msa0072000:intron 35.0%
! GGAAAATGTTTTCTTCACAC+AGG - chr1_2:44556274-44556293 Msa0072000:intron 35.0%
CATAATGTTTATACCAGGGA+TGG + chr1_2:44556350-44556369 None:intergenic 35.0%
TGTGGATTCAGATGATGAAA+TGG - chr1_2:44556548-44556567 Msa0072000:intron 35.0%
TGATGCCATATTTCTTAGAG+AGG - chr1_2:44556689-44556708 Msa0072000:intron 35.0%
! CAACTCCTCTCTAAGAAATA+TGG + chr1_2:44556697-44556716 None:intergenic 35.0%
CATATTTCTTAGAGAGGAGT+TGG - chr1_2:44556695-44556714 Msa0072000:intron 35.0%
TCACATATCTTTCGGAATTG+AGG + chr1_2:44556837-44556856 None:intergenic 35.0%
GCGTGGTCGAAAACAAAAAA+TGG + chr1_2:44541963-44541982 Msa0071990:intron 40.0%
GAGTGAAATAGAGAAGGAAG+AGG + chr1_2:44541988-44542007 Msa0071990:intron 40.0%
!! CTATCCTTCTGCTTTGTTTC+AGG - chr1_2:44542148-44542167 Msa0072000:three_prime_UTR 40.0%
AGGCACTCAAAAATCAACAC+TGG + chr1_2:44542496-44542515 Msa0071990:CDS 40.0%
!! CAACTTGTTGGTTGGTCTAA+TGG - chr1_2:44542579-44542598 Msa0072000:three_prime_UTR 40.0%
AACTACTTTAGCCACTTCAG+CGG + chr1_2:44542640-44542659 None:intergenic 40.0%
GTAGTTCCCGTCAGTAAAAT+AGG - chr1_2:44542654-44542673 Msa0072000:three_prime_UTR 40.0%
! GAATCTACGACATTGGGTTT+TGG - chr1_2:44542881-44542900 Msa0072000:intron 40.0%
CATGCTAGTCACATTCATTG+TGG + chr1_2:44543096-44543115 None:intergenic 40.0%
CACAATGAATGTGACTAGCA+TGG - chr1_2:44543094-44543113 Msa0072000:intron 40.0%
TGGCGAAGAATATTGTCCTT+AGG - chr1_2:44543730-44543749 Msa0072000:intron 40.0%
CGAAGCTACAGGAAATAGTT+TGG - chr1_2:44543828-44543847 Msa0072000:intron 40.0%
GGTTGAAATTCAGGTCTGTT+TGG - chr1_2:44543849-44543868 Msa0072000:intron 40.0%
AACTTATTTCCACAAGCTCC+AGG - chr1_2:44544123-44544142 Msa0072000:intron 40.0%
ATTCGAAAGGCAGCAATTTG+AGG + chr1_2:44544405-44544424 None:intergenic 40.0%
TCAAATTGCTGCCTTTCGAA+TGG - chr1_2:44544404-44544423 Msa0072000:CDS 40.0%
! TAGTGTAGGGAGAAAAGTGT+CGG - chr1_2:44544433-44544452 Msa0072000:CDS 40.0%
TAAATGGGGCAGTTCAAGAA+AGG - chr1_2:44544478-44544497 Msa0072000:intron 40.0%
AAATGGGGCAGTTCAAGAAA+GGG - chr1_2:44544479-44544498 Msa0072000:intron 40.0%
! CATGATTTGTCTTCGAGTAG+TGG - chr1_2:44544515-44544534 Msa0072000:intron 40.0%
!!! TTACGTTTTCTAAGACGGGA+AGG - chr1_2:44544570-44544589 Msa0072000:intron 40.0%
! GATGATGGTATGACTGTCAA+CGG - chr1_2:44544623-44544642 Msa0072000:intron 40.0%
! AAGCTTTATATGATGCAGCC+AGG - chr1_2:44544741-44544760 Msa0072000:intron 40.0%
! AGCTTTATATGATGCAGCCA+GGG - chr1_2:44544742-44544761 Msa0072000:intron 40.0%
AATTGCTAGCTCAAAAACCC+TGG + chr1_2:44544762-44544781 None:intergenic 40.0%
!! TATCCTGGTTTTCAACAGCT+TGG - chr1_2:44544807-44544826 Msa0072000:intron 40.0%
TTGAGAGACAACCTTTGTGA+TGG - chr1_2:44544968-44544987 Msa0072000:CDS 40.0%
AGAACAACATGCCATCACAA+AGG + chr1_2:44544982-44545001 None:intergenic 40.0%
CACGCTAGATGAACTGTAAA+AGG - chr1_2:44545033-44545052 Msa0072000:intron 40.0%
GCCAAAGGACCTACTTAATT+AGG + chr1_2:44545508-44545527 None:intergenic 40.0%
GACGGCTTGTCAATGATAAT+GGG + chr1_2:44545698-44545717 None:intergenic 40.0%
AGACGGCTTGTCAATGATAA+TGG + chr1_2:44545699-44545718 None:intergenic 40.0%
TACACTAAATTACCCCAAGC+TGG + chr1_2:44545734-44545753 None:intergenic 40.0%
GAAGGGAAGGATTTAAACTG+AGG - chr1_2:44546301-44546320 Msa0072000:intron 40.0%
GATACTGGTATCTGTTTGAG+TGG - chr1_2:44546380-44546399 Msa0072000:intron 40.0%
GTGGGTTTGATCTTCAAATG+AGG - chr1_2:44546399-44546418 Msa0072000:intron 40.0%
TGTTCGAACGTAGAAAGCAA+GGG - chr1_2:44546507-44546526 Msa0072000:intron 40.0%
TTCGATCGTCTAGTGTTCAA+TGG - chr1_2:44546585-44546604 Msa0072000:intron 40.0%
! TGTTCAAGTTAGACCGAGTA+TGG - chr1_2:44546788-44546807 Msa0072000:intron 40.0%
GAGACTGAGTTAGCCATATT+TGG - chr1_2:44546824-44546843 Msa0072000:intron 40.0%
TCTATCTCTGCTATCATCTC+GGG + chr1_2:44547106-44547125 None:intergenic 40.0%
! GATAAATAGTTTCGGGTACG+TGG + chr1_2:44547255-44547274 None:intergenic 40.0%
CGAGCGAATCAAATATTGGA+AGG + chr1_2:44547566-44547585 None:intergenic 40.0%
TCTCTGATTAAGCTCTCCAA+GGG + chr1_2:44547730-44547749 None:intergenic 40.0%
TTCTCTGATTAAGCTCTCCA+AGG + chr1_2:44547731-44547750 None:intergenic 40.0%
CAAAACCATTCGTACACTTC+AGG + chr1_2:44547772-44547791 None:intergenic 40.0%
! CTGAAGTGTACGAATGGTTT+TGG - chr1_2:44547770-44547789 Msa0072000:intron 40.0%
GTCAATAAGTTTGAAGGGGA+CGG - chr1_2:44547826-44547845 Msa0072000:CDS 40.0%
TCAATAAGTTTGAAGGGGAC+GGG - chr1_2:44547827-44547846 Msa0072000:CDS 40.0%
! TGTGAGCAAGAAACTTTTGC+CGG + chr1_2:44548085-44548104 None:intergenic 40.0%
!!! CTTTTAGAGCAAACGTTGAG+TGG - chr1_2:44548248-44548267 Msa0072000:CDS 40.0%
! TTTAGAGCAAACGTTGAGTG+GGG - chr1_2:44548250-44548269 Msa0072000:CDS 40.0%
!! GACAACATCTGAAAGCATTG+AGG - chr1_2:44548357-44548376 Msa0072000:intron 40.0%
CTTATCCCACTAAGTGAGAT+CGG + chr1_2:44548671-44548690 None:intergenic 40.0%
! TGTTAGCATGGTACAGGTTT+TGG - chr1_2:44548955-44548974 Msa0072000:intron 40.0%
!!! ACAGGTTTTGGAGAAGGATT+TGG - chr1_2:44548967-44548986 Msa0072000:intron 40.0%
GCTAGTAGTACAACTAGCAA+AGG + chr1_2:44549180-44549199 None:intergenic 40.0%
!! GATAAAGGTGCTTAAGTTGC+TGG + chr1_2:44549278-44549297 None:intergenic 40.0%
! GAACTAATGGATGAGAGTTG+AGG + chr1_2:44549406-44549425 None:intergenic 40.0%
GGGAAGTTCTTTAACTGCAT+AGG - chr1_2:44549506-44549525 Msa0072000:intron 40.0%
! ATAGGTAGTTTGTGAAGAGC+TGG - chr1_2:44549524-44549543 Msa0072000:intron 40.0%
! TAGTTTGTGAAGAGCTGGAT+TGG - chr1_2:44549529-44549548 Msa0072000:intron 40.0%
!!! GGATTGGCTTCCTTTTTATC+CGG - chr1_2:44549545-44549564 Msa0072000:intron 40.0%
!!! GATTGGCTTCCTTTTTATCC+GGG - chr1_2:44549546-44549565 Msa0072000:intron 40.0%
! ATGAGACTGTTTTGTGATGC+TGG + chr1_2:44549577-44549596 None:intergenic 40.0%
AGCATCACAAAACAGTCTCA+TGG - chr1_2:44549576-44549595 Msa0072000:CDS 40.0%
GCATCACAAAACAGTCTCAT+GGG - chr1_2:44549577-44549596 Msa0072000:CDS 40.0%
AGAGCAAACAGCAAATGCTT+GGG + chr1_2:44549643-44549662 None:intergenic 40.0%
AAGAGCAAACAGCAAATGCT+TGG + chr1_2:44549644-44549663 None:intergenic 40.0%
! TGTTAGGCACAACAAGTTGA+TGG - chr1_2:44549825-44549844 Msa0072000:intron 40.0%
! TGTTATTTGGCTGTTGTTGG+CGG + chr1_2:44550160-44550179 None:intergenic 40.0%
! AGCTGTTATTTGGCTGTTGT+TGG + chr1_2:44550163-44550182 None:intergenic 40.0%
ACAGCTGTAGTGGTAAAGTT+CGG - chr1_2:44550177-44550196 Msa0072000:intron 40.0%
TAGTCATTCCAGCCCAAAAT+TGG - chr1_2:44550207-44550226 Msa0072000:intron 40.0%
GGAGGATTGTCAAACATTCA+TGG - chr1_2:44550274-44550293 Msa0072000:CDS 40.0%
! TCCTACAAATGCTCTTTTGG+TGG - chr1_2:44550409-44550428 Msa0072000:intron 40.0%
!! TCCACCAAAAGAGCATTTGT+AGG + chr1_2:44550413-44550432 None:intergenic 40.0%
AGTCCAAGAGTTGAATCTAG+AGG - chr1_2:44550516-44550535 Msa0072000:intron 40.0%
TAGCCTCTAGATTCAACTCT+TGG + chr1_2:44550522-44550541 None:intergenic 40.0%
ACCTCTCTAATATGTGACTC+TGG - chr1_2:44550681-44550700 Msa0072000:intron 40.0%
!!! TGGAAACATTTTTTCTGCCG+TGG + chr1_2:44550845-44550864 None:intergenic 40.0%
! TTGCCCGTCAACTATTTTCT+TGG + chr1_2:44551056-44551075 None:intergenic 40.0%
CAGTCAACGATAAAAGACTC+AGG - chr1_2:44551088-44551107 Msa0072000:CDS 40.0%
! AGACTCAGGTTCTTTTGATG+AGG - chr1_2:44551102-44551121 Msa0072000:CDS 40.0%
AGGCATGAAGATGTCAGATT+AGG + chr1_2:44551200-44551219 None:intergenic 40.0%
! AAAAGCTGATTCTCTGCAAG+AGG - chr1_2:44551501-44551520 Msa0072000:CDS 40.0%
GGTTGTGGATGATATTGTAG+AGG + chr1_2:44551537-44551556 None:intergenic 40.0%
ATACCAGGAATTGGTAAAGG+AGG + chr1_2:44551558-44551577 None:intergenic 40.0%
CGAAAAAGATTCCCACTTTC+AGG + chr1_2:44551667-44551686 None:intergenic 40.0%
ACTGATCAACATAACAGGGA+TGG - chr1_2:44551743-44551762 Msa0072000:intron 40.0%
! CCCCATCACTGATTATTATC+TGG + chr1_2:44551771-44551790 None:intergenic 40.0%
GTCAATGAAAGCTGTCAAAG+TGG + chr1_2:44551946-44551965 None:intergenic 40.0%
ACAAATGCAAAGGGGATGAA+GGG + chr1_2:44552241-44552260 None:intergenic 40.0%
AACAAATGCAAAGGGGATGA+AGG + chr1_2:44552242-44552261 None:intergenic 40.0%
GAAGGCAAAATCTATGTTCG+GGG + chr1_2:44552265-44552284 None:intergenic 40.0%
! GACATAAAACTGGCTCAAGA+AGG + chr1_2:44552283-44552302 None:intergenic 40.0%
!!! GCTTTTTTCCATGGCATTTC+AGG - chr1_2:44552367-44552386 Msa0072000:intron 40.0%
TAGTGATCAAACCATCACAC+CGG - chr1_2:44552584-44552603 Msa0072000:intron 40.0%
AGGAGGACAGGTTTATGAAA+GGG - chr1_2:44552613-44552632 Msa0072000:intron 40.0%
ATGACAATGTAAAGGTGGAC+AGG - chr1_2:44552649-44552668 Msa0072000:intron 40.0%
TTGGAAAATCTCGTGGATTC+TGG - chr1_2:44552809-44552828 Msa0072000:intron 40.0%
AAATCAAATAGCGGCTGAAG+CGG + chr1_2:44553283-44553302 None:intergenic 40.0%
! AGATAGAAGAGTGTGTTTCG+TGG + chr1_2:44553380-44553399 None:intergenic 40.0%
GTATATGCTCTTCCACCTTT+GGG - chr1_2:44553633-44553652 Msa0072000:intron 40.0%
TATATGCTCTTCCACCTTTG+GGG - chr1_2:44553634-44553653 Msa0072000:intron 40.0%
GTTTCTCGTTGCATCTTTAC+AGG + chr1_2:44553781-44553800 None:intergenic 40.0%
GTTACTAGTGTGCTTTAGTC+AGG - chr1_2:44553809-44553828 Msa0072000:intron 40.0%
! GTTGCTGGTTAGTTATGAAC+TGG - chr1_2:44553835-44553854 Msa0072000:intron 40.0%
CACTTTACGAATAATGAGGG+AGG + chr1_2:44554020-44554039 None:intergenic 40.0%
CTCCCTCATTATTCGTAAAG+TGG - chr1_2:44554018-44554037 Msa0072000:intron 40.0%
! CGCCACTTTACGAATAATGA+GGG + chr1_2:44554023-44554042 None:intergenic 40.0%
CCTCATTATTCGTAAAGTGG+CGG - chr1_2:44554021-44554040 Msa0072000:intron 40.0%
CATAAACTGGAACAGAACAG+TGG - chr1_2:44554144-44554163 Msa0072000:intron 40.0%
GAACAGAACAGTGGTTCATT+TGG - chr1_2:44554153-44554172 Msa0072000:intron 40.0%
! GTTCATTTGGTTTAGCTGCA+TGG - chr1_2:44554166-44554185 Msa0072000:intron 40.0%
!! TTATGGACTTGCTATCTTGC+AGG - chr1_2:44554243-44554262 Msa0072000:intron 40.0%
GAAGGATTTCATTGGGTTCT+TGG + chr1_2:44554312-44554331 None:intergenic 40.0%
CTCAAAGCGAAGGATTTCAT+TGG + chr1_2:44554320-44554339 None:intergenic 40.0%
TTCTTAGAAGCTCAAAGCGA+AGG + chr1_2:44554330-44554349 None:intergenic 40.0%
! GCTTCTAAGAAATGAGCTGA+TGG - chr1_2:44554339-44554358 Msa0072000:intron 40.0%
AGCTGATGGAACTTGAGAAA+AGG - chr1_2:44554353-44554372 Msa0072000:intron 40.0%
GCTGATGGAACTTGAGAAAA+GGG - chr1_2:44554354-44554373 Msa0072000:intron 40.0%
CTGATTGATAGGCACTTCTT+TGG + chr1_2:44554381-44554400 None:intergenic 40.0%
!!! CAGACCTTTTTCAAGTGAAG+TGG + chr1_2:44554530-44554549 None:intergenic 40.0%
AGCTTCACATCCTTATCACA+TGG - chr1_2:44554791-44554810 Msa0072000:CDS 40.0%
CAATAGCATGCCATGTGATA+AGG + chr1_2:44554804-44554823 None:intergenic 40.0%
AAAAGACATGGAATAGGGTG+AGG + chr1_2:44555074-44555093 None:intergenic 40.0%
AGGTGATGAATTGACTGAGA+AGG - chr1_2:44555290-44555309 Msa0072000:intron 40.0%
AACTGAAGCCATGTCAGTTA+AGG + chr1_2:44555337-44555356 None:intergenic 40.0%
ATGGCTTCAGTTGTTCCTAT+CGG - chr1_2:44555345-44555364 Msa0072000:intron 40.0%
TACACTTCTCTATCCAGAAC+AGG + chr1_2:44555443-44555462 None:intergenic 40.0%
AATCACGTCTTGCTCAAACA+TGG - chr1_2:44555523-44555542 Msa0072000:intron 40.0%
ATCACGTCTTGCTCAAACAT+GGG - chr1_2:44555524-44555543 Msa0072000:intron 40.0%
!! GAGTGTTGGTCAAATGAATC+AGG + chr1_2:44555562-44555581 None:intergenic 40.0%
TTTGACCAACACTCCTAAGT+TGG - chr1_2:44555568-44555587 Msa0072000:intron 40.0%
! ATTTGCCAACTTAGGAGTGT+TGG + chr1_2:44555576-44555595 None:intergenic 40.0%
TAAATGGCTGCATGATTAGG+TGG - chr1_2:44555684-44555703 Msa0072000:intron 40.0%
AACTCGCAAACAAAGCCTTA+AGG + chr1_2:44555815-44555834 None:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG - chr1_2:44555815-44555834 Msa0072000:intron 40.0%
GGGAGGGTTTGGAAAAAAAA+AGG - chr1_2:44555850-44555869 Msa0072000:intron 40.0%
GGAGTAAGTGGAAGAAATAG+AGG - chr1_2:44555875-44555894 Msa0072000:intron 40.0%
CCCATGACCACTAGATTATA+AGG - chr1_2:44555909-44555928 Msa0072000:intron 40.0%
! CTCGTTTACATTTTCTAGGC+AGG + chr1_2:44556179-44556198 None:intergenic 40.0%
ATAAGTGGATGGAATCTGCA+AGG + chr1_2:44556460-44556479 None:intergenic 40.0%
ATCATCTGAATCCACATCAC+TGG + chr1_2:44556544-44556563 None:intergenic 40.0%
CTTCCTGGTCTGATGAAAAT+TGG - chr1_2:44556630-44556649 Msa0072000:intron 40.0%
! GATCCAATTTTCATCAGACC+AGG + chr1_2:44556636-44556655 None:intergenic 40.0%
ATAAGTTCATTCCACGTGTC+TGG - chr1_2:44556724-44556743 Msa0072000:intron 40.0%
ATGGTCACCCTTCCAAATAT+CGG + chr1_2:44556810-44556829 None:intergenic 40.0%
CTTTCGGAATTGAGGAAAGA+TGG + chr1_2:44556829-44556848 None:intergenic 40.0%
AAGAGATGCAATATGGAAGC+TGG + chr1_2:44556879-44556898 None:intergenic 40.0%
AGGAAACTGTGACAAAGACA+AGG + chr1_2:44556971-44556990 None:intergenic 40.0%
GTACAGTGAAATTGCAGGAA+TGG + chr1_2:44557009-44557028 None:intergenic 40.0%
AGTCTGTACAGTGAAATTGC+AGG + chr1_2:44557014-44557033 None:intergenic 40.0%
TGTGACTGTTTGAGAGCTTA+TGG - chr1_2:44557159-44557178 Msa0072000:intron 40.0%
CGAACCTGAAACAAAGCAGA+AGG + chr1_2:44542155-44542174 Msa0071990:intron 45.0%
!! GTTTCAGGTTCGAATCTCTC+TGG - chr1_2:44542163-44542182 Msa0072000:three_prime_UTR 45.0%
CAGTTAGTAGACGGTGAGAT+TGG - chr1_2:44542216-44542235 Msa0072000:three_prime_UTR 45.0%
! GGAATAGACGGACTCTCTAT+AGG + chr1_2:44542681-44542700 None:intergenic 45.0%
CGGAGCAAAATAATCGCTGA+GGG + chr1_2:44543174-44543193 None:intergenic 45.0%
ACGGAGCAAAATAATCGCTG+AGG + chr1_2:44543175-44543194 None:intergenic 45.0%
TTCTATGATTATGGTCGCGG+TGG - chr1_2:44543271-44543290 Msa0072000:intron 45.0%
!! TTTTGACTACCTTGCGTGTG+AGG - chr1_2:44543689-44543708 Msa0072000:intron 45.0%
TTTCTTACACCTCACACGCA+AGG + chr1_2:44543701-44543720 None:intergenic 45.0%
ACAAGCTGTCCTAAAGCTTG+TGG + chr1_2:44543986-44544005 None:intergenic 45.0%
AACTTATTTCCACAGGCTCC+TGG - chr1_2:44544045-44544064 Msa0072000:CDS 45.0%
AGTTGCGGAATAAGCTATCC+AGG + chr1_2:44544066-44544085 None:intergenic 45.0%
ATAAGCTATCCTGGAGCTTG+TGG + chr1_2:44544135-44544154 None:intergenic 45.0%
CACTAGAGGAACCATTCGAA+AGG + chr1_2:44544418-44544437 None:intergenic 45.0%
TCGAATGGTTCCTCTAGTGT+AGG - chr1_2:44544419-44544438 Msa0072000:CDS 45.0%
CGAATGGTTCCTCTAGTGTA+GGG - chr1_2:44544420-44544439 Msa0072000:CDS 45.0%
! CACTTTTCTCCCTACACTAG+AGG + chr1_2:44544432-44544451 None:intergenic 45.0%
TTGTCTTCGAGTAGTGGTCA+AGG - chr1_2:44544521-44544540 Msa0072000:intron 45.0%
CCATCATCAGAGGTAGCAAA+TGG + chr1_2:44544611-44544630 None:intergenic 45.0%
! CCATTTGCTACCTCTGATGA+TGG - chr1_2:44544608-44544627 Msa0072000:intron 45.0%
GACAGTCATACCATCATCAG+AGG + chr1_2:44544621-44544640 None:intergenic 45.0%
AATCATCGTCACGTGTATCC+TGG - chr1_2:44544792-44544811 Msa0072000:intron 45.0%
AAGCCAAGCTGTTGAAAACC+AGG + chr1_2:44544813-44544832 None:intergenic 45.0%
! TGGTTTTCAACAGCTTGGCT+TGG - chr1_2:44544812-44544831 Msa0072000:intron 45.0%
! GGTTTTCAACAGCTTGGCTT+GGG - chr1_2:44544813-44544832 Msa0072000:intron 45.0%
!! GTTTTCAACAGCTTGGCTTG+GGG - chr1_2:44544814-44544833 Msa0072000:intron 45.0%
TGGAACTACGTCTAGTGTCT+CGG - chr1_2:44545153-44545172 Msa0072000:intron 45.0%
! GTTGCTTTATGGCAACCGAA+AGG - chr1_2:44545316-44545335 Msa0072000:intron 45.0%
CACTTCTCTTCTCTCCTCAT+GGG - chr1_2:44545360-44545379 Msa0072000:intron 45.0%
CTGCTTATCAATGTGCGGAT+TGG - chr1_2:44545440-44545459 Msa0072000:intron 45.0%
GAAGCAGAAGGGCAATAACT+GGG - chr1_2:44546323-44546342 Msa0072000:intron 45.0%
AACAAAACAGAGGGTTAGGG+AGG - chr1_2:44546430-44546449 Msa0072000:CDS 45.0%
CAGAAGTGGTAGACTCAATG+TGG - chr1_2:44546470-44546489 Msa0072000:CDS 45.0%
TCTACGTTCGAACACTCGAT+AGG + chr1_2:44546501-44546520 None:intergenic 45.0%
GTGTTCGAACGTAGAAAGCA+AGG - chr1_2:44546506-44546525 Msa0072000:intron 45.0%
AGACGATCGAAGTTCACCTA+CGG + chr1_2:44546576-44546595 None:intergenic 45.0%
TGAAGTGCAGAAAGCGAACA+TGG - chr1_2:44546658-44546677 Msa0072000:CDS 45.0%
! GTGCTCTCTCTAGTTGCTTT+CGG - chr1_2:44547652-44547671 Msa0072000:intron 45.0%
!! TGCATTGGTCCAGTTTGCTA+AGG - chr1_2:44547695-44547714 Msa0072000:intron 45.0%
! AGCAGATAGCCTTAGCAAAC+TGG + chr1_2:44547707-44547726 None:intergenic 45.0%
TTCGTACACTTCAGGCTGTT+TGG + chr1_2:44547764-44547783 None:intergenic 45.0%
AACAGCCTGAAGTGTACGAA+TGG - chr1_2:44547764-44547783 Msa0072000:intron 45.0%
ACATGAAGGAGCAAGAACAG+AGG + chr1_2:44547924-44547943 None:intergenic 45.0%
TTTGACTGAATTCCCAGGTC+TGG - chr1_2:44547974-44547993 Msa0072000:intron 45.0%
TCCCAGGTCTGGAAAAACTA+AGG - chr1_2:44547985-44548004 Msa0072000:intron 45.0%
!! CCCTTAGTTTTTCCAGACCT+GGG + chr1_2:44547989-44548008 None:intergenic 45.0%
CCCAGGTCTGGAAAAACTAA+GGG - chr1_2:44547986-44548005 Msa0072000:intron 45.0%
!! ACCCTTAGTTTTTCCAGACC+TGG + chr1_2:44547990-44548009 None:intergenic 45.0%
CAATGCATGTAAGTGCAAGC+AGG + chr1_2:44548042-44548061 None:intergenic 45.0%
TGCAATTGCTAAACTTGGCC+CGG - chr1_2:44548063-44548082 Msa0072000:intron 45.0%
! GTGAGCAAGAAACTTTTGCC+GGG + chr1_2:44548084-44548103 None:intergenic 45.0%
!! TCCATGAGCACTGAGATAAC+TGG - chr1_2:44548112-44548131 Msa0072000:intron 45.0%
ACCAGTTATCTCAGTGCTCA+TGG + chr1_2:44548116-44548135 None:intergenic 45.0%
! TGGTAGTTTGATGGACATGC+TGG - chr1_2:44548132-44548151 Msa0072000:intron 45.0%
! AGTTTGATGGACATGCTGGT+TGG - chr1_2:44548136-44548155 Msa0072000:intron 45.0%
!!! CTGTGGTTTTGGCACTAAAC+TGG - chr1_2:44548405-44548424 Msa0072000:intron 45.0%
! TGGCACTAAACTGGTGATGT+TGG - chr1_2:44548414-44548433 Msa0072000:intron 45.0%
ACTAAGTGAGATCGGCTACA+TGG + chr1_2:44548663-44548682 None:intergenic 45.0%
ATGTAGCCGATCTCACTTAG+TGG - chr1_2:44548662-44548681 Msa0072000:intron 45.0%
TGTAGCCGATCTCACTTAGT+GGG - chr1_2:44548663-44548682 Msa0072000:intron 45.0%
CGATCTCACTTAGTGGGATA+AGG - chr1_2:44548669-44548688 Msa0072000:intron 45.0%
TCACTTAGTGGGATAAGGCT+TGG - chr1_2:44548674-44548693 Msa0072000:intron 45.0%
TTAAGCACATTCCTCCATGC+TGG + chr1_2:44548780-44548799 None:intergenic 45.0%
!!! CATGGTACAGGTTTTGGAGA+AGG - chr1_2:44548961-44548980 Msa0072000:intron 45.0%
CTGGTGATTCCCGGATAAAA+AGG + chr1_2:44549558-44549577 None:intergenic 45.0%
TTTGTGATGCTGGTGATTCC+CGG + chr1_2:44549567-44549586 None:intergenic 45.0%
CATGGGCATAGTAAACCAGA+AGG - chr1_2:44549594-44549613 Msa0072000:CDS 45.0%
CAGCTGAATTTCTGTCCAGA+GGG - chr1_2:44549724-44549743 Msa0072000:CDS 45.0%
!! CAACAAGTTGATGGAGTGCA+TGG - chr1_2:44549834-44549853 Msa0072000:intron 45.0%
! ATGGCTGCTATTGACTACAC+AGG + chr1_2:44550073-44550092 None:intergenic 45.0%
CAGCCAAATAACAGCTGTAG+TGG - chr1_2:44550167-44550186 Msa0072000:intron 45.0%
! CATGAATGCCAATTTTGGGC+TGG + chr1_2:44550218-44550237 None:intergenic 45.0%
CAGCCCAAAATTGGCATTCA+TGG - chr1_2:44550216-44550235 Msa0072000:intron 45.0%
GCCAGAGTCACATATTAGAG+AGG + chr1_2:44550685-44550704 None:intergenic 45.0%
! CTTTTTCTACCAGAGAGCCA+CGG - chr1_2:44550825-44550844 Msa0072000:intron 45.0%
! CATGTGTCAAGCTCTAGTTC+TGG - chr1_2:44551388-44551407 Msa0072000:intron 45.0%
!! GTCAAGCTCTAGTTCTGGAA+AGG - chr1_2:44551393-44551412 Msa0072000:intron 45.0%
GAAAGAAGCTGAATTCCTGG+AGG - chr1_2:44551465-44551484 Msa0072000:CDS 45.0%
! GCAGAGAATCAGCTTTTGCT+CGG + chr1_2:44551498-44551517 None:intergenic 45.0%
GGAATTGGTAAAGGAGGTTG+TGG + chr1_2:44551552-44551571 None:intergenic 45.0%
CAACCTCCTTTACCAATTCC+TGG - chr1_2:44551552-44551571 Msa0072000:CDS 45.0%
AAGAAGGAGAAACGCGAAAG+AGG + chr1_2:44551619-44551638 None:intergenic 45.0%
TGGCCCCTAAATGGCAATTA+AGG - chr1_2:44551879-44551898 Msa0072000:intron 45.0%
! TTGACACTGAGCTCCCATTT+TGG - chr1_2:44551961-44551980 Msa0072000:intron 45.0%
TTCGGGGAACAAATGCAAAG+GGG + chr1_2:44552249-44552268 None:intergenic 45.0%
GTTCGGGGAACAAATGCAAA+GGG + chr1_2:44552250-44552269 None:intergenic 45.0%
TGTTCGGGGAACAAATGCAA+AGG + chr1_2:44552251-44552270 None:intergenic 45.0%
TGAATGCACCTGAAATGCCA+TGG + chr1_2:44552378-44552397 None:intergenic 45.0%
GAGGAGGACAGGTTTATGAA+AGG - chr1_2:44552612-44552631 Msa0072000:intron 45.0%
TAAAGGTGGACAGGAGCAAA+AGG - chr1_2:44552658-44552677 Msa0072000:intron 45.0%
CATACATGAGCATCCACATC+AGG + chr1_2:44552877-44552896 None:intergenic 45.0%
GTGACCGCTATTTGTCATAC+TGG - chr1_2:44553611-44553630 Msa0072000:intron 45.0%
GGTATATGCTCTTCCACCTT+TGG - chr1_2:44553632-44553651 Msa0072000:intron 45.0%
TGTCACATAGTAGTCAACCC+CGG + chr1_2:44553681-44553700 None:intergenic 45.0%
GCTTTAGTCAGGATAGTTGC+TGG - chr1_2:44553820-44553839 Msa0072000:intron 45.0%
! ACCAGTTTTCTTGTTGGGGT+GGG + chr1_2:44553987-44554006 None:intergenic 45.0%
! AACCAGTTTTCTTGTTGGGG+TGG + chr1_2:44553988-44554007 None:intergenic 45.0%
! CCGCCACTTTACGAATAATG+AGG + chr1_2:44554024-44554043 None:intergenic 45.0%
AACAGCCTGCACCAAATGTA+GGG - chr1_2:44554278-44554297 Msa0072000:intron 45.0%
TTAGGATGAGACAGCGTAGT+AGG + chr1_2:44554504-44554523 None:intergenic 45.0%
! GATGATGGTGCCCGTTATAA+CGG - chr1_2:44554859-44554878 Msa0072000:CDS 45.0%
TCCAGCATCACCGTTATAAC+GGG + chr1_2:44554872-44554891 None:intergenic 45.0%
CTCCAGCATCACCGTTATAA+CGG + chr1_2:44554873-44554892 None:intergenic 45.0%
!! TATTGATGTTGGTGCTGCCT+CGG - chr1_2:44555245-44555264 Msa0072000:intron 45.0%
AGTGGAACTCAGGATAGTCA+CGG + chr1_2:44555743-44555762 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - chr1_2:44555819-44555838 Msa0072000:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr1_2:44555820-44555839 Msa0072000:intron 45.0%
TCAGAGATATGTACCATCCC+TGG - chr1_2:44556334-44556353 Msa0072000:intron 45.0%
! CTTTCTGGTGCATAAGTGGA+TGG + chr1_2:44556471-44556490 None:intergenic 45.0%
CATCCACTTATGCACCAGAA+AGG - chr1_2:44556469-44556488 Msa0072000:intron 45.0%
! CAACCTTTCTGGTGCATAAG+TGG + chr1_2:44556475-44556494 None:intergenic 45.0%
CACTTATGCACCAGAAAGGT+TGG - chr1_2:44556473-44556492 Msa0072000:intron 45.0%
CTCAAGAGATCCAACCTTTC+TGG + chr1_2:44556486-44556505 None:intergenic 45.0%
CAGAAAGGTTGGATCTCTTG+AGG - chr1_2:44556484-44556503 Msa0072000:intron 45.0%
GTCAATGTCAACCAGTGATG+TGG - chr1_2:44556530-44556549 Msa0072000:intron 45.0%
CTGGTTCCCGATATTTGGAA+GGG - chr1_2:44556800-44556819 Msa0072000:intron 45.0%
TGGTCACCCTTCCAAATATC+GGG + chr1_2:44556809-44556828 None:intergenic 45.0%
!! GATCAGCTTCGAGTTTTGCA+GGG - chr1_2:44556932-44556951 Msa0072000:intron 45.0%
!! AGTTTTGCAGGGTCGTTTTC+TGG - chr1_2:44556943-44556962 Msa0072000:intron 45.0%
AATGGCACATGGAATGAAGG+AGG + chr1_2:44556991-44557010 None:intergenic 45.0%
AGGAATGGCACATGGAATGA+AGG + chr1_2:44556994-44557013 None:intergenic 45.0%
GAAATTGCAGGAATGGCACA+TGG + chr1_2:44557002-44557021 None:intergenic 45.0%
GGGATGCAATCCAGAATTTG+AGG + chr1_2:44557354-44557373 None:intergenic 45.0%
!! ATTAAAAAATACTATATTTA+TGG - chr1_2:44542951-44542970 Msa0072000:intron 5.0%
!!! TATTTTCAAATATATATTAT+AGG - chr1_2:44543802-44543821 Msa0072000:intron 5.0%
!!! TTTCAATATTTTAAAATTAA+TGG - chr1_2:44545569-44545588 Msa0072000:intron 5.0%
!! ATTAAATTTAAAAAGATAAT+AGG + chr1_2:44551006-44551025 None:intergenic 5.0%
!!! ATTAAATATGTTTTTTTTTT+TGG - chr1_2:44553515-44553534 Msa0072000:intron 5.0%
TAGAGAAGGAAGAGGTTGCG+TGG + chr1_2:44541980-44541999 Msa0071990:intron 50.0%
! GACGGTGAGATTGGTTCACT+CGG - chr1_2:44542225-44542244 Msa0072000:three_prime_UTR 50.0%
GGTTCACTCGGTAGTTGTAC+CGG - chr1_2:44542237-44542256 Msa0072000:three_prime_UTR 50.0%
ATAAGCTATCCAGGAGCCTG+TGG + chr1_2:44544057-44544076 None:intergenic 50.0%
!! TTAGTACTGGCGTCAGCTTG+TGG + chr1_2:44544653-44544672 None:intergenic 50.0%
TGACAATGCCTTCACCCATG+CGG + chr1_2:44544849-44544868 None:intergenic 50.0%
!! GGTGAAGGCATTGTCATGTC+AGG - chr1_2:44544853-44544872 Msa0072000:intron 50.0%
GCACTTCTCTTCTCTCCTCA+TGG - chr1_2:44545359-44545378 Msa0072000:intron 50.0%
CACTACTGAATTGGCCCATG+AGG + chr1_2:44545377-44545396 None:intergenic 50.0%
GGAAGCAGAAGGGCAATAAC+TGG - chr1_2:44546322-44546341 Msa0072000:intron 50.0%
AGAAAGCAAGGGACAGAGTC+AGG - chr1_2:44546518-44546537 Msa0072000:intron 50.0%
! CAGAGTCAGGCAAGTTTTGC+CGG - chr1_2:44546531-44546550 Msa0072000:intron 50.0%
! AGAGTCAGGCAAGTTTTGCC+GGG - chr1_2:44546532-44546551 Msa0072000:intron 50.0%
ACAAAGGACGTCACTACAGC+TGG + chr1_2:44547808-44547827 None:intergenic 50.0%
GCTGCAGCAGGCTATTGATA+AGG - chr1_2:44548315-44548334 Msa0072000:intron 50.0%
CTTAGTGGGATAAGGCTTGG+TGG - chr1_2:44548677-44548696 Msa0072000:intron 50.0%
ACCAGAAGGTCCTCCAAATG+CGG - chr1_2:44549608-44549627 Msa0072000:CDS 50.0%
GCAGCTGAATTTCTGTCCAG+AGG - chr1_2:44549723-44549742 Msa0072000:CDS 50.0%
GCATTGCTCTAGTTACCCTC+TGG + chr1_2:44549742-44549761 None:intergenic 50.0%
!! CAAGTTGATGGAGTGCATGG+AGG - chr1_2:44549837-44549856 Msa0072000:intron 50.0%
ATGGAGTGCATGGAGGAACT+TGG - chr1_2:44549844-44549863 Msa0072000:intron 50.0%
TGGAGTGCATGGAGGAACTT+GGG - chr1_2:44549845-44549864 Msa0072000:intron 50.0%
TGGGATTTCACATAGCGCCT+AGG + chr1_2:44550106-44550125 None:intergenic 50.0%
!!! TTTTTTCTGCCGTGGCTCTC+TGG + chr1_2:44550837-44550856 None:intergenic 50.0%
GAAAGCAGCCTGTTCTGACT+TGG - chr1_2:44551423-44551442 Msa0072000:intron 50.0%
GATCAAACCATCACACCGGT+TGG - chr1_2:44552588-44552607 Msa0072000:intron 50.0%
TGAGCATCCACATCAGGTTC+CGG + chr1_2:44552871-44552890 None:intergenic 50.0%
CGCTACGACGATTACCATAG+CGG + chr1_2:44553195-44553214 None:intergenic 50.0%
CGCTATGGTAATCGTCGTAG+CGG - chr1_2:44553193-44553212 Msa0072000:intron 50.0%
AGCGGCGCGGAATCAAATAA+CGG - chr1_2:44553211-44553230 Msa0072000:intron 50.0%
TGCCGCTATAGCAGCTAAAG+CGG + chr1_2:44553237-44553256 None:intergenic 50.0%
TAGCTGCTATAGCGGCATAG+TGG - chr1_2:44553240-44553259 Msa0072000:intron 50.0%
! AAGAGTGTGTTTCGTGGCAC+AGG + chr1_2:44553374-44553393 None:intergenic 50.0%
TAGTAGTCAACCCCGGATAG+CGG + chr1_2:44553674-44553693 None:intergenic 50.0%
! AGTTTTCTTGTTGGGGTGGG+GGG + chr1_2:44553984-44554003 None:intergenic 50.0%
! CAGTTTTCTTGTTGGGGTGG+GGG + chr1_2:44553985-44554004 None:intergenic 50.0%
! CCAGTTTTCTTGTTGGGGTG+GGG + chr1_2:44553986-44554005 None:intergenic 50.0%
GAACAGCCTGCACCAAATGT+AGG - chr1_2:44554277-44554296 Msa0072000:intron 50.0%
ACAGCCTGCACCAAATGTAG+GGG - chr1_2:44554279-44554298 Msa0072000:intron 50.0%
!! ACAACCCCTACATTTGGTGC+AGG + chr1_2:44554286-44554305 None:intergenic 50.0%
TGCACCAAATGTAGGGGTTG+TGG - chr1_2:44554285-44554304 Msa0072000:intron 50.0%
TGGTCCACAACCCCTACATT+TGG + chr1_2:44554292-44554311 None:intergenic 50.0%
CGTTATAACGGTGATGCTGG+AGG - chr1_2:44554871-44554890 Msa0072000:CDS 50.0%
!! TGATGCTGGAGGTGTTCAGA+TGG - chr1_2:44554882-44554901 Msa0072000:CDS 50.0%
!! ATTGATGTTGGTGCTGCCTC+GGG - chr1_2:44555246-44555265 Msa0072000:intron 50.0%
GTGGAACTCAGGATAGTCAC+GGG + chr1_2:44555742-44555761 None:intergenic 50.0%
AGCTAACTCAGCAAGGCTAG+TGG + chr1_2:44555761-44555780 None:intergenic 50.0%
GTCGATCAGCTAACTCAGCA+AGG + chr1_2:44555768-44555787 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr1_2:44555818-44555837 Msa0072000:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - chr1_2:44555825-44555844 Msa0072000:intron 50.0%
GATTATGAGCCTTGGCACAG+TGG + chr1_2:44555961-44555980 None:intergenic 50.0%
TTCACACAGGTTACTGCCGT+TGG - chr1_2:44556287-44556306 Msa0072000:intron 50.0%
TCACACAGGTTACTGCCGTT+GGG - chr1_2:44556288-44556307 Msa0072000:intron 50.0%
CAACATTGCTGCATGCCCAA+CGG + chr1_2:44556306-44556325 None:intergenic 50.0%
CAGCTGTGTTCTTCGCTTTC+TGG - chr1_2:44556655-44556674 Msa0072000:intron 50.0%
TGTAGCCACTGGTGTTTACC+CGG + chr1_2:44556754-44556773 None:intergenic 50.0%
! GCTACAATCCTGAGGAGCAT+CGG - chr1_2:44556768-44556787 Msa0072000:intron 50.0%
!! CTACAATCCTGAGGAGCATC+GGG - chr1_2:44556769-44556788 Msa0072000:intron 50.0%
GGTTCCTGGTTCCCGATATT+TGG - chr1_2:44556795-44556814 Msa0072000:intron 50.0%
CCTTCCAAATATCGGGAACC+AGG + chr1_2:44556802-44556821 None:intergenic 50.0%
CCTGGTTCCCGATATTTGGA+AGG - chr1_2:44556799-44556818 Msa0072000:intron 50.0%
!! GGATCAGCTTCGAGTTTTGC+AGG - chr1_2:44556931-44556950 Msa0072000:intron 50.0%
TTGGGGTAGACCAAACCGCA+TGG - chr1_2:44544831-44544850 Msa0072000:intron 55.0%
TGGGGTAGACCAAACCGCAT+GGG - chr1_2:44544832-44544851 Msa0072000:intron 55.0%
AGACCAAACCGCATGGGTGA+AGG - chr1_2:44544838-44544857 Msa0072000:intron 55.0%
ATGCCTTCACCCATGCGGTT+TGG + chr1_2:44544844-44544863 None:intergenic 55.0%
! TCAGGCAAGTTTTGCCGGGA+GGG - chr1_2:44546536-44546555 Msa0072000:intron 55.0%
GCTAAGGCTATCTGCTCCCT+TGG - chr1_2:44547711-44547730 Msa0072000:intron 55.0%
!! GCTCTAAAAGCTGCAGCTCG+AGG + chr1_2:44548238-44548257 None:intergenic 55.0%
CGTTGAGTGGGGTTCAGAAG+AGG - chr1_2:44548261-44548280 Msa0072000:CDS 55.0%
TCCGCATTTGGAGGACCTTC+TGG + chr1_2:44549612-44549631 None:intergenic 55.0%
GTCACTGCTTCCGCATTTGG+AGG + chr1_2:44549621-44549640 None:intergenic 55.0%
TGGGTCACTGCTTCCGCATT+TGG + chr1_2:44549624-44549643 None:intergenic 55.0%
CAGCCATAGCAGTTGCTCCT+AGG - chr1_2:44550086-44550105 Msa0072000:intron 55.0%
TTGCTCGGAAAGATGCCTCC+AGG + chr1_2:44551483-44551502 None:intergenic 55.0%
! AACCATCACACCGGTTGGTG+AGG - chr1_2:44552593-44552612 Msa0072000:intron 55.0%
AACCTGTCCTCCTCACCAAC+CGG + chr1_2:44552606-44552625 None:intergenic 55.0%
TCGGGCTTTCTGGGTATAGG+AGG + chr1_2:44552847-44552866 None:intergenic 55.0%
TATACCCAGAAAGCCCGACC+CGG - chr1_2:44552849-44552868 Msa0072000:intron 55.0%
ATCCACATCAGGTTCCGGGT+CGG + chr1_2:44552866-44552885 None:intergenic 55.0%
GAGCATCCACATCAGGTTCC+GGG + chr1_2:44552870-44552889 None:intergenic 55.0%
GGCACCATAGTCGTCAACAG+CGG - chr1_2:44553123-44553142 Msa0072000:intron 55.0%
CGTTGCCACTACTCTACGCA+CGG + chr1_2:44553170-44553189 None:intergenic 55.0%
GTAGTGGCAACGAACCGCTA+TGG - chr1_2:44553178-44553197 Msa0072000:intron 55.0%
! GGCCGCTTTAGCTGCTATAG+CGG - chr1_2:44553232-44553251 Msa0072000:intron 55.0%
GCTATAGCGGCATAGTGGTG+CGG - chr1_2:44553245-44553264 Msa0072000:intron 55.0%
!! TGCTCTTCCACCTTTGGGGT+CGG - chr1_2:44553638-44553657 Msa0072000:intron 55.0%
! GTTTTCTTGTTGGGGTGGGG+GGG + chr1_2:44553983-44554002 None:intergenic 55.0%
CCCCACCCCAACAAGAAAAC+TGG - chr1_2:44553983-44554002 Msa0072000:intron 55.0%
GCCCGTTATAACGGTGATGC+TGG - chr1_2:44554868-44554887 Msa0072000:CDS 55.0%
TGACATTGGTCGGATGACGC+TGG - chr1_2:44555038-44555057 Msa0072000:intron 55.0%
GACATTGGTCGGATGACGCT+GGG - chr1_2:44555039-44555058 Msa0072000:intron 55.0%
! CTGCCTCGGGTTTGGTCAAA+AGG - chr1_2:44555259-44555278 Msa0072000:intron 55.0%
! GGTCCTTTTGACCAAACCCG+AGG + chr1_2:44555265-44555284 None:intergenic 55.0%
GGCTAGAGCAGGCAGACATA+TGG + chr1_2:44555715-44555734 None:intergenic 55.0%
CTCAGGATAGTCACGGGTGT+GGG + chr1_2:44555736-44555755 None:intergenic 55.0%
ACTCAGGATAGTCACGGGTG+TGG + chr1_2:44555737-44555756 None:intergenic 55.0%
CAGCAAGGCTAGTGGAACTC+AGG + chr1_2:44555753-44555772 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - chr1_2:44555824-44555843 Msa0072000:intron 55.0%
GTGACCTTTCCACTGTGCCA+AGG - chr1_2:44555949-44555968 Msa0072000:intron 55.0%
TGAGCCTTGGCACAGTGGAA+AGG + chr1_2:44555956-44555975 None:intergenic 55.0%
CGTTGGGCATGCAGCAATGT+TGG - chr1_2:44556304-44556323 Msa0072000:intron 55.0%
ATTCCACGTGTCTGGCACTC+CGG - chr1_2:44556732-44556751 Msa0072000:intron 55.0%
CACCAGTGGCTACAATCCTG+AGG - chr1_2:44556760-44556779 Msa0072000:intron 55.0%
CTCCTCAGGATTGTAGCCAC+TGG + chr1_2:44556765-44556784 None:intergenic 55.0%
!! AATCCTGAGGAGCATCGGGT+GGG - chr1_2:44556773-44556792 Msa0072000:intron 55.0%
AACCGTCTGAGCCGCTGAAG+TGG - chr1_2:44542626-44542645 Msa0072000:three_prime_UTR 60.0%
AGCCACTTCAGCGGCTCAGA+CGG + chr1_2:44542631-44542650 Msa0071990:CDS 60.0%
GAGGTGGGATCATGCTCCGT+AGG - chr1_2:44542854-44542873 Msa0072000:intron 60.0%
! GTCAGGCAAGTTTTGCCGGG+AGG - chr1_2:44546535-44546554 Msa0072000:intron 60.0%
! CAAACAGTGTCGCTCCCTCC+CGG + chr1_2:44546553-44546572 None:intergenic 60.0%
GGAGCGACACTGTTTGCCGT+AGG - chr1_2:44546557-44546576 Msa0072000:intron 60.0%
GGTTCAGAAGCAGCTGCAGC+AGG - chr1_2:44548303-44548322 Msa0072000:intron 60.0%
GCGCCTAGGAGCAACTGCTA+TGG + chr1_2:44550092-44550111 None:intergenic 60.0%
CTCCTCACCAACCGGTGTGA+TGG + chr1_2:44552598-44552617 None:intergenic 60.0%
!! CATCACACCGGTTGGTGAGG+AGG - chr1_2:44552596-44552615 Msa0072000:intron 60.0%
GGGTCGGGCTTTCTGGGTAT+AGG + chr1_2:44552850-44552869 None:intergenic 60.0%
TCCACATCAGGTTCCGGGTC+GGG + chr1_2:44552865-44552884 None:intergenic 60.0%
TCGGCCGCTGTTGACGACTA+TGG + chr1_2:44553130-44553149 None:intergenic 60.0%
TCGTCAACAGCGGCCGATAG+CGG - chr1_2:44553133-44553152 Msa0072000:intron 60.0%
! GGCCGATAGCGGCACTATAG+CGG - chr1_2:44553144-44553163 Msa0072000:intron 60.0%
! GGCCGCTATAGTGCCGCTAT+CGG + chr1_2:44553149-44553168 None:intergenic 60.0%
TGGTAATCGTCGTAGCGGCG+CGG - chr1_2:44553198-44553217 Msa0072000:intron 60.0%
TAGTGGTGCGGAGCGGATAG+CGG - chr1_2:44553257-44553276 Msa0072000:intron 60.0%
!! TGTTGGTGCTGCCTCGGGTT+TGG - chr1_2:44555251-44555270 Msa0072000:intron 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG - chr1_2:44555829-44555848 Msa0072000:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr1_2:44555830-44555849 Msa0072000:intron 60.0%
TTCCACGTGTCTGGCACTCC+GGG - chr1_2:44556733-44556752 Msa0072000:intron 60.0%
GCACTCCGGGTAAACACCAG+TGG - chr1_2:44556746-44556765 Msa0072000:intron 60.0%
!! CAATCCTGAGGAGCATCGGG+TGG - chr1_2:44556772-44556791 Msa0072000:intron 60.0%
!! ATCCTGAGGAGCATCGGGTG+GGG - chr1_2:44556774-44556793 Msa0072000:intron 60.0%
!! CACCGGTTGGTGAGGAGGAC+AGG - chr1_2:44552601-44552620 Msa0072000:intron 65.0%
GGTTCCGGGTCGGGCTTTCT+GGG + chr1_2:44552856-44552875 None:intergenic 65.0%
AGGTTCCGGGTCGGGCTTTC+TGG + chr1_2:44552857-44552876 None:intergenic 65.0%
AGCGGCCGTGCGTAGAGTAG+TGG - chr1_2:44553162-44553181 Msa0072000:intron 65.0%
AGCGGCATAGTGGTGCGGAG+CGG - chr1_2:44553250-44553269 Msa0072000:intron 65.0%
TTCGTAGCGGCCGACCCCAA+AGG + chr1_2:44553651-44553670 None:intergenic 65.0%
GGCCGCTACGAACCGCTATC+CGG - chr1_2:44553659-44553678 Msa0072000:intron 65.0%
GCCGCTACGAACCGCTATCC+GGG - chr1_2:44553660-44553679 Msa0072000:intron 65.0%
! CCCCGGATAGCGGTTCGTAG+CGG + chr1_2:44553664-44553683 None:intergenic 65.0%
CCGCTACGAACCGCTATCCG+GGG - chr1_2:44553661-44553680 Msa0072000:intron 65.0%
TCTTGTTGGGGTGGGGGGGT+GGG + chr1_2:44553979-44553998 None:intergenic 65.0%
TTCTTGTTGGGGTGGGGGGG+TGG + chr1_2:44553980-44553999 None:intergenic 65.0%
!! TCACGGGTGTGGGCTAGAGC+AGG + chr1_2:44555726-44555745 None:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG - chr1_2:44555828-44555847 Msa0072000:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr1_2:44555833-44555852 Msa0072000:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr1_2:44555834-44555853 Msa0072000:intron 65.0%
! TACCCGGAGTGCCAGACACG+TGG + chr1_2:44556738-44556757 None:intergenic 65.0%
AACCCCACCCGATGCTCCTC+AGG + chr1_2:44556779-44556798 None:intergenic 65.0%
GCCCGACCCGGAACCTGATG+TGG - chr1_2:44552861-44552880 Msa0072000:intron 70.0%
GTAGCGGCCGACCCCAAAGG+TGG + chr1_2:44553648-44553667 None:intergenic 70.0%
GGGGAAGGGAGGGGAGGGTT+TGG - chr1_2:44555839-44555858 Msa0072000:intron 70.0%
!! GGAGCATCGGGTGGGGTTCC+TGG - chr1_2:44556781-44556800 Msa0072000:intron 70.0%
GGGTGGGGGGGTGGGAAGGA+GGG + chr1_2:44553971-44553990 None:intergenic 75.0%
GTTGGGGTGGGGGGGTGGGA+AGG + chr1_2:44553975-44553994 None:intergenic 75.0%
! GGGGTGGGGGGGTGGGAAGG+AGG + chr1_2:44553972-44553991 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 44541937 44557374 44541937 ID=Msa0072000;Name=Msa0072000
chr1_2 mRNA 44541937 44557374 44541937 ID=Msa0072000-mRNA-1;Parent=Msa0072000;Name=Msa0072000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=153|1|1|1|1|1|18|790|906
chr1_2 exon 44541937 44542846 44541937 ID=Msa0072000-mRNA-1:exon:13412;Parent=Msa0072000-mRNA-1
chr1_2 exon 44542956 44543015 44542956 ID=Msa0072000-mRNA-1:exon:13411;Parent=Msa0072000-mRNA-1
chr1_2 exon 44543925 44544095 44543925 ID=Msa0072000-mRNA-1:exon:13410;Parent=Msa0072000-mRNA-1
chr1_2 exon 44544342 44544467 44544342 ID=Msa0072000-mRNA-1:exon:13409;Parent=Msa0072000-mRNA-1
chr1_2 exon 44544900 44545046 44544900 ID=Msa0072000-mRNA-1:exon:13408;Parent=Msa0072000-mRNA-1
chr1_2 exon 44546420 44546507 44546420 ID=Msa0072000-mRNA-1:exon:13407;Parent=Msa0072000-mRNA-1
chr1_2 exon 44546632 44546735 44546632 ID=Msa0072000-mRNA-1:exon:13406;Parent=Msa0072000-mRNA-1
chr1_2 exon 44547789 44547980 44547789 ID=Msa0072000-mRNA-1:exon:13405;Parent=Msa0072000-mRNA-1
chr1_2 exon 44548188 44548281 44548188 ID=Msa0072000-mRNA-1:exon:13404;Parent=Msa0072000-mRNA-1
chr1_2 exon 44549436 44549480 44549436 ID=Msa0072000-mRNA-1:exon:13403;Parent=Msa0072000-mRNA-1
chr1_2 exon 44549566 44549783 44549566 ID=Msa0072000-mRNA-1:exon:13402;Parent=Msa0072000-mRNA-1
chr1_2 exon 44549867 44549939 44549867 ID=Msa0072000-mRNA-1:exon:13401;Parent=Msa0072000-mRNA-1
chr1_2 exon 44550222 44550340 44550222 ID=Msa0072000-mRNA-1:exon:13400;Parent=Msa0072000-mRNA-1
chr1_2 exon 44550933 44551320 44550933 ID=Msa0072000-mRNA-1:exon:13399;Parent=Msa0072000-mRNA-1
chr1_2 exon 44551439 44551603 44551439 ID=Msa0072000-mRNA-1:exon:13398;Parent=Msa0072000-mRNA-1
chr1_2 exon 44552160 44552251 44552160 ID=Msa0072000-mRNA-1:exon:13397;Parent=Msa0072000-mRNA-1
chr1_2 exon 44554437 44554911 44554437 ID=Msa0072000-mRNA-1:exon:13396;Parent=Msa0072000-mRNA-1
chr1_2 exon 44557178 44557374 44557178 ID=Msa0072000-mRNA-1:exon:13395;Parent=Msa0072000-mRNA-1
chr1_2 five_prime_UTR 44557222 44557374 44557222 ID=Msa0072000-mRNA-1:five_prime_utr;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44557178 44557221 44557178 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44554437 44554911 44554437 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44552160 44552251 44552160 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44551439 44551603 44551439 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44550933 44551320 44550933 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44550222 44550340 44550222 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44549867 44549939 44549867 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44549566 44549783 44549566 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44549436 44549480 44549436 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44548188 44548281 44548188 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44547789 44547980 44547789 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44546632 44546735 44546632 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44546420 44546507 44546420 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44544900 44545046 44544900 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44544342 44544467 44544342 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44543925 44544095 44543925 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44542956 44543015 44542956 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 CDS 44542727 44542846 44542727 ID=Msa0072000-mRNA-1:cds;Parent=Msa0072000-mRNA-1
chr1_2 three_prime_UTR 44541937 44542726 44541937 ID=Msa0072000-mRNA-1:three_prime_utr;Parent=Msa0072000-mRNA-1
Gene Sequence

>Msa0072000

ATGGCAGTTAAATCTCATAGCACCAATAATTTTCTTCCGTTAAGCTCCTCAAATTGCTGCCTTTCGAATGGTTCCTCTAGTGTAGGGAGAAAAGTGTCGGACTTGCATTGCCTACTATTTAGTAAATGGGGCAGTTCAAGAAAGGGATGCCTTATACAACATGATTTGTCTTCGAGTAGTGGTCAAGGTTCTTTGAGCTGTAGAAAACACTATTTTACGTTTTCTAAGACGGGAAGGAGTGTAAATTTGCTTCCATTTGCTACCTCTGATGATGGTATGACTGTCAACGGTAGTCCACAAGCTGACGCCAGTACTAACCTTGAAAAAATGAGGGTGAAATTGAATAGCTCTCTTGAAGATGAAGACTTTTATGATGGACTTGTTCAAGCTTTATATGATGCAGCCAGGGTTTTTGAGCTAGCAATTAAAGACCATAAATCATCGTCACGTGTATCCTGGTTTTCAACAGCTTGGCTTGGGGTAGACCAAACCGCATGGGTGAAGGCATTGTCATGTCAGGCTGCCGTGTACTCCTTATTATATGCTGCAAGTGAAATTTCATCCCGAGATGATAGCAGAGATAGAAATGTCAATGTATTTGTTCAAAGGAGTTTGCTAAGGCTATCTGCTCCCTTGGAGAGCTTAATCAGAGAAAACTTATCTGCCAAACAGCCTGAAGTGTACGAATGGTTTTGGTCTGAGCAAGTTCCAGCTGTAGTGACGTCCTTTGTCAATAAGTTTGAAGGGGACGGGCGCTTCACTTCTGCCATTGCTCTGTCTGGAAAAACTAAGGGTTTAAGCAGTGCAAGTGATGTATCACTTCTCCTGCTTGCACTTACATGCATTGCTGCAATTGCTAAACTTGGCCCGGCAAAAGTTTCTTGCTCACAATTCTTTTCCATGAGCACTGAGATAACTGGTAGTTTGATGGACATGCTGGTTGGTTTAATTCCTGTAAGTCAAGCTTATAATTCTATAAAGGATGTTGGTCTACACAGAGAATTTCTTGTACATTTTGGTCCTCGAGCTGCAGCTTTTAGAGCAAACGTTGAGTGGGGTTCAGAAGAGGTTATTTTCTGGGTAAATCTGGTTCAGAAGCAGCTGCAGCAGGCTATTGATAAGGAGAAAATATGGTCAAGACTGACAACATCTGAAAGCATTGAGGTTTTGGAGAAGGATTTGGCTATATTTGGATTCTTTATTGCTTTAGGCAGAAGTACACGAACATTTCTTTTGGCAAATGGTTTCGATACTCCCGATGATCCAATTGAAGATTTCATCCGGTATCTTATTGGGGGAAGTGTTTTATACTACCCTCAACTCTCATCCATTAGTTCATATCAATTGTATGTCGAGGTAGTTTGTGAAGAGCTGGATTGGCTTCCTTTTTATCCGGGAATCACCAGCATCACAAAACAGTCTCATGGGCATAGTAAACCAGAAGGTCCTCCAAATGCGGAAGCAGTGACCCAAGCATTTGCTGTTTGCTCTTATTGGATGCAGAGCTTTATCAAATACAGCACATGGCTTGAGAGTCCTTCAAATGTAAAAGCAGCTGAATTTCTGTCCAGAGGGCACAACAAGTTGATGGAGTGCATGGAGGAACTTGGGATGATAAAAGATAAGACATTGGAGAGTGATGCCAAGAAAATAGTTGACGGGCAAAGATCCACAATTCAGTCAACGATAAAAGACTCAGGTTCTTTTGATGAGGCATTAAAAAGTGTCGAAGAAGCTGTGATAAAGCTTGAAAAGTTGCTTCAAGAATTGCATGTGTCAAGCTCTAGTTCTGGAAAGGAGCATTTGAAAGCAGCCTGTTCTGACTTGGAAAAAATACGGAAACTTAAGAAAGAAGCTGAATTCCTGGAGGCATCTTTCCGAGCAAAAGCTGATTCTCTGCAAGAGGGAGTTAATAGTGATCAAACCATCACACCGGTTGGTGAGGAGGACAGGTTTATGAAAGGGAAAAGTAGAAAGAATGACAATGTAAAGGTGGACAGGAGCAAAAGACAAATTGGAAAATCTCGTGGATTCTGGAGCATATTTGTACCTCCTATACCCAGAAAGCCCGACCCGGAACCTGATGTGGATGCTCATGAAAATAATATTGAACAGCCTGCACCAAATGTAGGGGTTGTGGACCAAGAACCCAATGAAATCCTTCGCTTTGAGCTTCTAAGAAATGAGCTGATGGAACTTGAGAAAAGGGTCCAAAGAAGTGCCTATCAATCAGAAAATAATGAGGATTTGATGATCAGTGATGATGGTGCCCGTTATAACGGTGATGCTGGAGGTGTTCAGATGGTCAGAGTTCAGAAGAATGAAAATTTCATACAGAAATCTTTTGACAAACTAAAAGAAACGGGAACGGATGTCTTGCAAGGAACTCAACTTCTTGCTATTGATGTTGGTGCTGCCTCGGGTTTGGTCAAAAGGACCTTAATAGGTGATGAATTGACTGAGAAGGAGAAGAAAGCACTTAAAAGAACCTTAACTGACATGGCTTCAGTTGTTCCTATCGGCATTTTAATGCTTCTTCCTGTTACTGCCGTTGGGCATGCAGCAATGTTGGCTGCGATTCAGAGATATGTACCATCCCTGATTCCATCCACTTATGCACCAGAAAGGTTGGATCTCTTGAGGCAGCTTGAGAAAGTGAAGCAAATGTCAATGTCAACCAGTGATGTGGATTCAGATGATGAAATGGATGAAGTTAAATGA
Protein sequence

>Msa0072000

MAVKSHSTNNFLPLSSSNCCLSNGSSSVGRKVSDLHCLLFSKWGSSRKGCLIQHDLSSSSGQGSLSCRKHYFTFSKTGRSVNLLPFATSDDGMTVNGSPQADASTNLEKMRVKLNSSLEDEDFYDGLVQALYDAARVFELAIKDHKSSSRVSWFSTAWLGVDQTAWVKALSCQAAVYSLLYAASEISSRDDSRDRNVNVFVQRSLLRLSAPLESLIRENLSAKQPEVYEWFWSEQVPAVVTSFVNKFEGDGRFTSAIALSGKTKGLSSASDVSLLLLALTCIAAIAKLGPAKVSCSQFFSMSTEITGSLMDMLVGLIPVSQAYNSIKDVGLHREFLVHFGPRAAAFRANVEWGSEEVIFWVNLVQKQLQQAIDKEKIWSRLTTSESIEVLEKDLAIFGFFIALGRSTRTFLLANGFDTPDDPIEDFIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLPFYPGITSITKQSHGHSKPEGPPNAEAVTQAFAVCSYWMQSFIKYSTWLESPSNVKAAEFLSRGHNKLMECMEELGMIKDKTLESDAKKIVDGQRSTIQSTIKDSGSFDEALKSVEEAVIKLEKLLQELHVSSSSSGKEHLKAACSDLEKIRKLKKEAEFLEASFRAKADSLQEGVNSDQTITPVGEEDRFMKGKSRKNDNVKVDRSKRQIGKSRGFWSIFVPPIPRKPDPEPDVDAHENNIEQPAPNVGVVDQEPNEILRFELLRNELMELEKRVQRSAYQSENNEDLMISDDGARYNGDAGGVQMVRVQKNENFIQKSFDKLKETGTDVLQGTQLLAIDVGAASGLVKRTLIGDELTEKEKKALKRTLTDMASVVPIGILMLLPVTAVGHAAMLAAIQRYVPSLIPSTYAPERLDLLRQLEKVKQMSMSTSDVDSDDEMDEVK*