AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0113160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113160 MtrunA17_Chr4g0020931 96.241 399 14 1 1 398 1 399 0.0 796
Msa0113160 MtrunA17_Chr1g0171891 95.739 399 15 2 1 398 1 398 0.0 749
Msa0113160 MtrunA17_Chr5g0428491 84.585 253 35 1 46 298 73 321 1.50e-145 416
Msa0113160 MtrunA17_Chr5g0428501 80.952 63 12 0 335 397 1 63 4.21e-32 115
Msa0113160 MtrunA17_Chr3g0089851 22.957 257 192 5 67 319 170 424 8.59e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113160 AT3G42630.1 57.658 333 140 1 66 398 84 415 3.61e-144 416
Msa0113160 AT4G14190.1 27.134 328 225 5 69 386 172 495 6.62e-24 103

Find 72 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAATTGATTCAAAATT+AGG 0.136404 1_3:-28866002 Msa0113160:CDS
ATGTTACGACGTTTAATATT+AGG 0.162570 1_3:-28865677 Msa0113160:CDS
ATAGGAGGAACCAGATATTT+TGG 0.193003 1_3:-28865329 Msa0113160:CDS
TAGAAAGCTTGGAAGGAATT+TGG 0.211995 1_3:-28865532 Msa0113160:CDS
GTTCCTGATTTGGTTACTTA+TGG 0.229795 1_3:-28865579 Msa0113160:CDS
GGTGAGTTTGTTAGAGATAT+TGG 0.235251 1_3:-28865825 Msa0113160:CDS
TTTCGAGGATGGCGCTGTTT+TGG 0.262354 1_3:-28865644 Msa0113160:CDS
GAAGAGAAAATTCTATGAAT+TGG 0.262799 1_3:-28865847 Msa0113160:CDS
ATGTTACACTACACACAAAA+TGG 0.264591 1_3:-28866284 Msa0113160:CDS
GCTTGCAGAGAGAGTTTGTT+AGG 0.289369 1_3:-28865725 Msa0113160:CDS
TGTTACGACGTTTAATATTA+GGG 0.297675 1_3:-28865676 Msa0113160:CDS
ATTGTGAATAAGTAATGAAT+TGG 0.304763 1_3:+28866355 None:intergenic
GTTAGTAGTTCCAAAATATC+TGG 0.311079 1_3:+28865319 None:intergenic
GTGATTAGGGCTATGGCTTA+TGG 0.328397 1_3:-28865879 Msa0113160:CDS
AATGAAATGGAGAATGCTTA+TGG 0.332682 1_3:-28865939 Msa0113160:CDS
GATTGAGGAAAATGTGATTA+GGG 0.333668 1_3:-28865892 Msa0113160:CDS
TGAAAAGGTTGTTCCTGATT+TGG 0.336453 1_3:-28865589 Msa0113160:CDS
TCATTGGCAATATCTTGTTT+TGG 0.336662 1_3:-28866083 Msa0113160:CDS
AACAACAGAAATGGAGTTAT+AGG 0.338389 1_3:-28865383 Msa0113160:CDS
TACAGATCCGTTTGTGTTTG+AGG 0.346471 1_3:-28865463 Msa0113160:CDS
TTTGTTAGGATGGTTGAATC+AGG 0.352533 1_3:-28865711 Msa0113160:CDS
TGATTGAGGAAAATGTGATT+AGG 0.365093 1_3:-28865893 Msa0113160:CDS
ATGGAAGGTTTAAGAGATCT+AGG 0.371453 1_3:-28865920 Msa0113160:CDS
AATATCTTAAGAAACATTAT+AGG 0.375645 1_3:-28865347 Msa0113160:CDS
TGCAGGAAACTTAAAATTGA+TGG 0.380524 1_3:-28866057 Msa0113160:CDS
AAGAGAAAATTCTATGAATT+GGG 0.388525 1_3:-28865846 Msa0113160:CDS
TTTGTTAGAGATATTGGTTT+AGG 0.403997 1_3:-28865819 Msa0113160:CDS
AATCAATGAAATGGTTTCAA+AGG 0.408380 1_3:-28866027 Msa0113160:CDS
GGTTTAGGTAGGAGAAATGT+TGG 0.413219 1_3:-28865804 Msa0113160:CDS
GGAAGAAACAATCAATGAAA+TGG 0.415135 1_3:-28866036 Msa0113160:CDS
CAACCATAAGTAACCAAATC+AGG 0.419881 1_3:+28865576 None:intergenic
ACAAGACACAACAACAGAAA+TGG 0.420204 1_3:-28865392 Msa0113160:CDS
TTGTGTTGTGGAGGCTTACT+TGG 0.423615 1_3:-28865556 Msa0113160:CDS
ATCAATGAAATGGTTTCAAA+GGG 0.437570 1_3:-28866026 Msa0113160:CDS
ATCTTAGTATTGAACATATG+AGG 0.444340 1_3:-28865614 Msa0113160:CDS
AGGTGACTTTCATTTGAGTT+CGG 0.445273 1_3:-28865430 Msa0113160:CDS
GACGTTTAATATTAGGGCTA+TGG 0.449092 1_3:-28865670 Msa0113160:CDS
ATGAGTAAAACTGAGGCAAA+AGG 0.460758 1_3:+28866102 None:intergenic
AAGAATATTATGAGAAGAGA+GGG 0.472453 1_3:+28866481 None:intergenic
GGAAAATGTGATTAGGGCTA+TGG 0.480637 1_3:-28865886 Msa0113160:CDS
GCTTACTTGGATAGAAAGCT+TGG 0.481941 1_3:-28865543 Msa0113160:CDS
GGTTGAATCAGGGTTTCGTC+CGG 0.489825 1_3:-28865700 Msa0113160:CDS
GCAGAGAGAGTTTGTTAGGA+TGG 0.492223 1_3:-28865721 Msa0113160:CDS
TTGTGAATAAGTAATGAATT+GGG 0.501393 1_3:+28866356 None:intergenic
ATATTAAACGTCGTAACATC+CGG 0.502209 1_3:+28865681 None:intergenic
GAAGAATATTATGAGAAGAG+AGG 0.502667 1_3:+28866480 None:intergenic
TTAGAGATATTGGTTTAGGT+AGG 0.504799 1_3:-28865815 Msa0113160:CDS
TGATGAGGCTACGAGAATGA+TGG 0.512608 1_3:+28866405 None:intergenic
GTTTAGGTAGGAGAAATGTT+GGG 0.514544 1_3:-28865803 Msa0113160:CDS
TTGTTAGGATGGTTGAATCA+GGG 0.518440 1_3:-28865710 Msa0113160:CDS
ATTATGAGAAGAGAGGGAAA+TGG 0.521310 1_3:+28866487 None:intergenic
GAAATGAAGAGAAGGGTGAA+AGG 0.523576 1_3:+28866214 None:intergenic
TGAACATATGAGGAGTGAAA+AGG 0.526259 1_3:-28865604 Msa0113160:CDS
CCTAAAACCTCAAACACAAA+CGG 0.528045 1_3:+28865456 None:intergenic
GATGAGGCTACGAGAATGAT+GGG 0.529992 1_3:+28866406 None:intergenic
TGAGTAAAACTGAGGCAAAA+GGG 0.534756 1_3:+28866103 None:intergenic
TACTTATGGTTGTGTTGTGG+AGG 0.538029 1_3:-28865565 Msa0113160:CDS
TAGAAATGAAATGAAGAGAA+GGG 0.540554 1_3:+28866207 None:intergenic
GGTTACTTATGGTTGTGTTG+TGG 0.542271 1_3:-28865568 Msa0113160:CDS
TTAGAAATGAAATGAAGAGA+AGG 0.544711 1_3:+28866206 None:intergenic
ACTTGGATAGAAAGCTTGGA+AGG 0.554688 1_3:-28865539 Msa0113160:CDS
AAATGGAGAATGCTTATGGA+AGG 0.557066 1_3:-28865935 Msa0113160:CDS
AACGGATCTGTAAACAATCT+CGG 0.566471 1_3:+28865474 None:intergenic
TGACTTTCATTTGAGTTCGG+AGG 0.582232 1_3:-28865427 Msa0113160:CDS
TTCATAAATCACAAACCACA+TGG 0.597201 1_3:-28866256 Msa0113160:CDS
ATCTTAAGAAACATTATAGG+AGG 0.601959 1_3:-28865344 Msa0113160:CDS
TGGAGATGAATATGAAGATG+AGG 0.627115 1_3:+28866439 None:intergenic
GTGTAGTGTAACATCAATGA+AGG 0.639366 1_3:+28866293 None:intergenic
GTTTATGAGTTGTTCCCATG+TGG 0.649227 1_3:+28866241 None:intergenic
TCATAAATCACAAACCACAT+GGG 0.667719 1_3:-28866255 Msa0113160:CDS
ATTGCCAATGAGTAAAACTG+AGG 0.682844 1_3:+28866095 None:intergenic
ATGAGGCTACGAGAATGATG+GGG 0.736149 1_3:+28866407 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAAATTGATTCAAAATT+AGG - chr1_3:28865812-28865831 Msa0113160:CDS 15.0%
!! AATATCTTAAGAAACATTAT+AGG - chr1_3:28866467-28866486 Msa0113160:CDS 15.0%
!!! TTTCAAATTGATTCAAAATT+AGG - chr1_3:28865812-28865831 Msa0113160:CDS 15.0%
!! AATATCTTAAGAAACATTAT+AGG - chr1_3:28866467-28866486 Msa0113160:CDS 15.0%
!! TTGTGAATAAGTAATGAATT+GGG + chr1_3:28865461-28865480 None:intergenic 20.0%
!! ATTGTGAATAAGTAATGAAT+TGG + chr1_3:28865462-28865481 None:intergenic 20.0%
!!! CTTTTGTATTATAGTGTTTT+TGG - chr1_3:28865845-28865864 Msa0113160:CDS 20.0%
!! AAGAGAAAATTCTATGAATT+GGG - chr1_3:28865968-28865987 Msa0113160:CDS 20.0%
!! TTGTGAATAAGTAATGAATT+GGG + chr1_3:28865461-28865480 None:intergenic 20.0%
!! ATTGTGAATAAGTAATGAAT+TGG + chr1_3:28865462-28865481 None:intergenic 20.0%
!!! CTTTTGTATTATAGTGTTTT+TGG - chr1_3:28865845-28865864 Msa0113160:CDS 20.0%
!! AAGAGAAAATTCTATGAATT+GGG - chr1_3:28865968-28865987 Msa0113160:CDS 20.0%
! AAGAATATTATGAGAAGAGA+GGG + chr1_3:28865336-28865355 None:intergenic 25.0%
!!! TTGCTGAAAAATTGGTTTTT+TGG + chr1_3:28865438-28865457 None:intergenic 25.0%
! TAGAAATGAAATGAAGAGAA+GGG + chr1_3:28865610-28865629 None:intergenic 25.0%
! TTAGAAATGAAATGAAGAGA+AGG + chr1_3:28865611-28865630 None:intergenic 25.0%
! AATCAATGAAATGGTTTCAA+AGG - chr1_3:28865787-28865806 Msa0113160:CDS 25.0%
! ATCAATGAAATGGTTTCAAA+GGG - chr1_3:28865788-28865807 Msa0113160:CDS 25.0%
!!! TTTTGGTAGTTTGAATGAAA+TGG - chr1_3:28865862-28865881 Msa0113160:CDS 25.0%
! GAAGAGAAAATTCTATGAAT+TGG - chr1_3:28865967-28865986 Msa0113160:CDS 25.0%
!!! TTTGTTAGAGATATTGGTTT+AGG - chr1_3:28865995-28866014 Msa0113160:CDS 25.0%
! ATGTTACGACGTTTAATATT+AGG - chr1_3:28866137-28866156 Msa0113160:CDS 25.0%
! TGTTACGACGTTTAATATTA+GGG - chr1_3:28866138-28866157 Msa0113160:CDS 25.0%
!! ATCTTAGTATTGAACATATG+AGG - chr1_3:28866200-28866219 Msa0113160:CDS 25.0%
!!! GGAGTTTGTTTTGAATAAAA+TGG - chr1_3:28866303-28866322 Msa0113160:CDS 25.0%
!!! TGTTTTGAATAAAATGGATG+TGG - chr1_3:28866309-28866328 Msa0113160:CDS 25.0%
! ATCTTAAGAAACATTATAGG+AGG - chr1_3:28866470-28866489 Msa0113160:CDS 25.0%
! AAGAATATTATGAGAAGAGA+GGG + chr1_3:28865336-28865355 None:intergenic 25.0%
!!! TTGCTGAAAAATTGGTTTTT+TGG + chr1_3:28865438-28865457 None:intergenic 25.0%
! TAGAAATGAAATGAAGAGAA+GGG + chr1_3:28865610-28865629 None:intergenic 25.0%
! TTAGAAATGAAATGAAGAGA+AGG + chr1_3:28865611-28865630 None:intergenic 25.0%
! AATCAATGAAATGGTTTCAA+AGG - chr1_3:28865787-28865806 Msa0113160:CDS 25.0%
! ATCAATGAAATGGTTTCAAA+GGG - chr1_3:28865788-28865807 Msa0113160:CDS 25.0%
!!! TTTTGGTAGTTTGAATGAAA+TGG - chr1_3:28865862-28865881 Msa0113160:CDS 25.0%
! GAAGAGAAAATTCTATGAAT+TGG - chr1_3:28865967-28865986 Msa0113160:CDS 25.0%
!!! TTTGTTAGAGATATTGGTTT+AGG - chr1_3:28865995-28866014 Msa0113160:CDS 25.0%
! ATGTTACGACGTTTAATATT+AGG - chr1_3:28866137-28866156 Msa0113160:CDS 25.0%
! TGTTACGACGTTTAATATTA+GGG - chr1_3:28866138-28866157 Msa0113160:CDS 25.0%
!! ATCTTAGTATTGAACATATG+AGG - chr1_3:28866200-28866219 Msa0113160:CDS 25.0%
!!! GGAGTTTGTTTTGAATAAAA+TGG - chr1_3:28866303-28866322 Msa0113160:CDS 25.0%
!!! TGTTTTGAATAAAATGGATG+TGG - chr1_3:28866309-28866328 Msa0113160:CDS 25.0%
! ATCTTAAGAAACATTATAGG+AGG - chr1_3:28866470-28866489 Msa0113160:CDS 25.0%
GAAGAATATTATGAGAAGAG+AGG + chr1_3:28865337-28865356 None:intergenic 30.0%
ATGTTACACTACACACAAAA+TGG - chr1_3:28865530-28865549 Msa0113160:CDS 30.0%
TTCATAAATCACAAACCACA+TGG - chr1_3:28865558-28865577 Msa0113160:CDS 30.0%
TCATAAATCACAAACCACAT+GGG - chr1_3:28865559-28865578 Msa0113160:CDS 30.0%
!! TCATTGGCAATATCTTGTTT+TGG - chr1_3:28865731-28865750 Msa0113160:CDS 30.0%
!!! ATATCTTGTTTTGGAAATGC+AGG - chr1_3:28865740-28865759 Msa0113160:CDS 30.0%
TGCAGGAAACTTAAAATTGA+TGG - chr1_3:28865757-28865776 Msa0113160:CDS 30.0%
GGAAGAAACAATCAATGAAA+TGG - chr1_3:28865778-28865797 Msa0113160:CDS 30.0%
AATGAAATGGAGAATGCTTA+TGG - chr1_3:28865875-28865894 Msa0113160:CDS 30.0%
TGATTGAGGAAAATGTGATT+AGG - chr1_3:28865921-28865940 Msa0113160:CDS 30.0%
GATTGAGGAAAATGTGATTA+GGG - chr1_3:28865922-28865941 Msa0113160:CDS 30.0%
!! TTAGAGATATTGGTTTAGGT+AGG - chr1_3:28865999-28866018 Msa0113160:CDS 30.0%
ATATTAAACGTCGTAACATC+CGG + chr1_3:28866136-28866155 None:intergenic 30.0%
AACAACAGAAATGGAGTTAT+AGG - chr1_3:28866431-28866450 Msa0113160:CDS 30.0%
GAAGAATATTATGAGAAGAG+AGG + chr1_3:28865337-28865356 None:intergenic 30.0%
ATGTTACACTACACACAAAA+TGG - chr1_3:28865530-28865549 Msa0113160:CDS 30.0%
TTCATAAATCACAAACCACA+TGG - chr1_3:28865558-28865577 Msa0113160:CDS 30.0%
TCATAAATCACAAACCACAT+GGG - chr1_3:28865559-28865578 Msa0113160:CDS 30.0%
!! TCATTGGCAATATCTTGTTT+TGG - chr1_3:28865731-28865750 Msa0113160:CDS 30.0%
!!! ATATCTTGTTTTGGAAATGC+AGG - chr1_3:28865740-28865759 Msa0113160:CDS 30.0%
TGCAGGAAACTTAAAATTGA+TGG - chr1_3:28865757-28865776 Msa0113160:CDS 30.0%
GGAAGAAACAATCAATGAAA+TGG - chr1_3:28865778-28865797 Msa0113160:CDS 30.0%
AATGAAATGGAGAATGCTTA+TGG - chr1_3:28865875-28865894 Msa0113160:CDS 30.0%
TGATTGAGGAAAATGTGATT+AGG - chr1_3:28865921-28865940 Msa0113160:CDS 30.0%
GATTGAGGAAAATGTGATTA+GGG - chr1_3:28865922-28865941 Msa0113160:CDS 30.0%
!! TTAGAGATATTGGTTTAGGT+AGG - chr1_3:28865999-28866018 Msa0113160:CDS 30.0%
ATATTAAACGTCGTAACATC+CGG + chr1_3:28866136-28866155 None:intergenic 30.0%
AACAACAGAAATGGAGTTAT+AGG - chr1_3:28866431-28866450 Msa0113160:CDS 30.0%
ATTATGAGAAGAGAGGGAAA+TGG + chr1_3:28865330-28865349 None:intergenic 35.0%
TGGAGATGAATATGAAGATG+AGG + chr1_3:28865378-28865397 None:intergenic 35.0%
!!! TTGGTTTTTTGGTAGTGATG+AGG + chr1_3:28865427-28865446 None:intergenic 35.0%
! GAATTGGGTTGCTGAAAAAT+TGG + chr1_3:28865446-28865465 None:intergenic 35.0%
GTGTAGTGTAACATCAATGA+AGG + chr1_3:28865524-28865543 None:intergenic 35.0%
TGAGTAAAACTGAGGCAAAA+GGG + chr1_3:28865714-28865733 None:intergenic 35.0%
ATGAGTAAAACTGAGGCAAA+AGG + chr1_3:28865715-28865734 None:intergenic 35.0%
! TTTGCCTCAGTTTTACTCAT+TGG - chr1_3:28865715-28865734 Msa0113160:CDS 35.0%
ATTGCCAATGAGTAAAACTG+AGG + chr1_3:28865722-28865741 None:intergenic 35.0%
AAATGGAGAATGCTTATGGA+AGG - chr1_3:28865879-28865898 Msa0113160:CDS 35.0%
ATGGAAGGTTTAAGAGATCT+AGG - chr1_3:28865894-28865913 Msa0113160:CDS 35.0%
!! GAGATCTAGGTTTTTGATTG+AGG - chr1_3:28865907-28865926 Msa0113160:CDS 35.0%
!! GGTGAGTTTGTTAGAGATAT+TGG - chr1_3:28865989-28866008 Msa0113160:CDS 35.0%
GTTTAGGTAGGAGAAATGTT+GGG - chr1_3:28866011-28866030 Msa0113160:CDS 35.0%
! GAAATGTTGGGAATCTTTTG+TGG - chr1_3:28866023-28866042 Msa0113160:CDS 35.0%
TTTGTTAGGATGGTTGAATC+AGG - chr1_3:28866103-28866122 Msa0113160:CDS 35.0%
TTGTTAGGATGGTTGAATCA+GGG - chr1_3:28866104-28866123 Msa0113160:CDS 35.0%
GACGTTTAATATTAGGGCTA+TGG - chr1_3:28866144-28866163 Msa0113160:CDS 35.0%
TGAACATATGAGGAGTGAAA+AGG - chr1_3:28866210-28866229 Msa0113160:CDS 35.0%
TGAAAAGGTTGTTCCTGATT+TGG - chr1_3:28866225-28866244 Msa0113160:CDS 35.0%
!! GTTCCTGATTTGGTTACTTA+TGG - chr1_3:28866235-28866254 Msa0113160:CDS 35.0%
CAACCATAAGTAACCAAATC+AGG + chr1_3:28866241-28866260 None:intergenic 35.0%
TAGAAAGCTTGGAAGGAATT+TGG - chr1_3:28866282-28866301 Msa0113160:CDS 35.0%
AACGGATCTGTAAACAATCT+CGG + chr1_3:28866343-28866362 None:intergenic 35.0%
CCTAAAACCTCAAACACAAA+CGG + chr1_3:28866361-28866380 None:intergenic 35.0%
!!! GTGTTTGAGGTTTTAGGTAA+AGG - chr1_3:28866364-28866383 Msa0113160:CDS 35.0%
! AGGTGACTTTCATTTGAGTT+CGG - chr1_3:28866384-28866403 Msa0113160:CDS 35.0%
ACAAGACACAACAACAGAAA+TGG - chr1_3:28866422-28866441 Msa0113160:CDS 35.0%
! ATAGGAGGAACCAGATATTT+TGG - chr1_3:28866485-28866504 Msa0113160:CDS 35.0%
ATTATGAGAAGAGAGGGAAA+TGG + chr1_3:28865330-28865349 None:intergenic 35.0%
TGGAGATGAATATGAAGATG+AGG + chr1_3:28865378-28865397 None:intergenic 35.0%
!!! TTGGTTTTTTGGTAGTGATG+AGG + chr1_3:28865427-28865446 None:intergenic 35.0%
! GAATTGGGTTGCTGAAAAAT+TGG + chr1_3:28865446-28865465 None:intergenic 35.0%
GTGTAGTGTAACATCAATGA+AGG + chr1_3:28865524-28865543 None:intergenic 35.0%
TGAGTAAAACTGAGGCAAAA+GGG + chr1_3:28865714-28865733 None:intergenic 35.0%
ATGAGTAAAACTGAGGCAAA+AGG + chr1_3:28865715-28865734 None:intergenic 35.0%
! TTTGCCTCAGTTTTACTCAT+TGG - chr1_3:28865715-28865734 Msa0113160:CDS 35.0%
ATTGCCAATGAGTAAAACTG+AGG + chr1_3:28865722-28865741 None:intergenic 35.0%
AAATGGAGAATGCTTATGGA+AGG - chr1_3:28865879-28865898 Msa0113160:CDS 35.0%
ATGGAAGGTTTAAGAGATCT+AGG - chr1_3:28865894-28865913 Msa0113160:CDS 35.0%
!! GAGATCTAGGTTTTTGATTG+AGG - chr1_3:28865907-28865926 Msa0113160:CDS 35.0%
!! GGTGAGTTTGTTAGAGATAT+TGG - chr1_3:28865989-28866008 Msa0113160:CDS 35.0%
GTTTAGGTAGGAGAAATGTT+GGG - chr1_3:28866011-28866030 Msa0113160:CDS 35.0%
! GAAATGTTGGGAATCTTTTG+TGG - chr1_3:28866023-28866042 Msa0113160:CDS 35.0%
TTTGTTAGGATGGTTGAATC+AGG - chr1_3:28866103-28866122 Msa0113160:CDS 35.0%
TTGTTAGGATGGTTGAATCA+GGG - chr1_3:28866104-28866123 Msa0113160:CDS 35.0%
GACGTTTAATATTAGGGCTA+TGG - chr1_3:28866144-28866163 Msa0113160:CDS 35.0%
TGAACATATGAGGAGTGAAA+AGG - chr1_3:28866210-28866229 Msa0113160:CDS 35.0%
TGAAAAGGTTGTTCCTGATT+TGG - chr1_3:28866225-28866244 Msa0113160:CDS 35.0%
!! GTTCCTGATTTGGTTACTTA+TGG - chr1_3:28866235-28866254 Msa0113160:CDS 35.0%
CAACCATAAGTAACCAAATC+AGG + chr1_3:28866241-28866260 None:intergenic 35.0%
TAGAAAGCTTGGAAGGAATT+TGG - chr1_3:28866282-28866301 Msa0113160:CDS 35.0%
AACGGATCTGTAAACAATCT+CGG + chr1_3:28866343-28866362 None:intergenic 35.0%
CCTAAAACCTCAAACACAAA+CGG + chr1_3:28866361-28866380 None:intergenic 35.0%
!!! GTGTTTGAGGTTTTAGGTAA+AGG - chr1_3:28866364-28866383 Msa0113160:CDS 35.0%
! AGGTGACTTTCATTTGAGTT+CGG - chr1_3:28866384-28866403 Msa0113160:CDS 35.0%
ACAAGACACAACAACAGAAA+TGG - chr1_3:28866422-28866441 Msa0113160:CDS 35.0%
! ATAGGAGGAACCAGATATTT+TGG - chr1_3:28866485-28866504 Msa0113160:CDS 35.0%
GTTTATGAGTTGTTCCCATG+TGG + chr1_3:28865576-28865595 None:intergenic 40.0%
GAAATGAAGAGAAGGGTGAA+AGG + chr1_3:28865603-28865622 None:intergenic 40.0%
GGAAAATGTGATTAGGGCTA+TGG - chr1_3:28865928-28865947 Msa0113160:CDS 40.0%
GGTTTAGGTAGGAGAAATGT+TGG - chr1_3:28866010-28866029 Msa0113160:CDS 40.0%
GGTTACTTATGGTTGTGTTG+TGG - chr1_3:28866246-28866265 Msa0113160:CDS 40.0%
TACTTATGGTTGTGTTGTGG+AGG - chr1_3:28866249-28866268 Msa0113160:CDS 40.0%
GCTTACTTGGATAGAAAGCT+TGG - chr1_3:28866271-28866290 Msa0113160:CDS 40.0%
ACTTGGATAGAAAGCTTGGA+AGG - chr1_3:28866275-28866294 Msa0113160:CDS 40.0%
TACAGATCCGTTTGTGTTTG+AGG - chr1_3:28866351-28866370 Msa0113160:CDS 40.0%
!! CCGTTTGTGTTTGAGGTTTT+AGG - chr1_3:28866358-28866377 Msa0113160:CDS 40.0%
! TGACTTTCATTTGAGTTCGG+AGG - chr1_3:28866387-28866406 Msa0113160:CDS 40.0%
GTTTATGAGTTGTTCCCATG+TGG + chr1_3:28865576-28865595 None:intergenic 40.0%
GAAATGAAGAGAAGGGTGAA+AGG + chr1_3:28865603-28865622 None:intergenic 40.0%
GGAAAATGTGATTAGGGCTA+TGG - chr1_3:28865928-28865947 Msa0113160:CDS 40.0%
GGTTTAGGTAGGAGAAATGT+TGG - chr1_3:28866010-28866029 Msa0113160:CDS 40.0%
GGTTACTTATGGTTGTGTTG+TGG - chr1_3:28866246-28866265 Msa0113160:CDS 40.0%
TACTTATGGTTGTGTTGTGG+AGG - chr1_3:28866249-28866268 Msa0113160:CDS 40.0%
GCTTACTTGGATAGAAAGCT+TGG - chr1_3:28866271-28866290 Msa0113160:CDS 40.0%
ACTTGGATAGAAAGCTTGGA+AGG - chr1_3:28866275-28866294 Msa0113160:CDS 40.0%
TACAGATCCGTTTGTGTTTG+AGG - chr1_3:28866351-28866370 Msa0113160:CDS 40.0%
!! CCGTTTGTGTTTGAGGTTTT+AGG - chr1_3:28866358-28866377 Msa0113160:CDS 40.0%
! TGACTTTCATTTGAGTTCGG+AGG - chr1_3:28866387-28866406 Msa0113160:CDS 40.0%
!! GAATGATGGGGTTTTTGTGG+TGG + chr1_3:28865398-28865417 None:intergenic 45.0%
!! CGAGAATGATGGGGTTTTTG+TGG + chr1_3:28865401-28865420 None:intergenic 45.0%
ATGAGGCTACGAGAATGATG+GGG + chr1_3:28865410-28865429 None:intergenic 45.0%
GATGAGGCTACGAGAATGAT+GGG + chr1_3:28865411-28865430 None:intergenic 45.0%
TGATGAGGCTACGAGAATGA+TGG + chr1_3:28865412-28865431 None:intergenic 45.0%
GTGATTAGGGCTATGGCTTA+TGG - chr1_3:28865935-28865954 Msa0113160:CDS 45.0%
! GCTTGCAGAGAGAGTTTGTT+AGG - chr1_3:28866089-28866108 Msa0113160:CDS 45.0%
!! GCAGAGAGAGTTTGTTAGGA+TGG - chr1_3:28866093-28866112 Msa0113160:CDS 45.0%
TTGTGTTGTGGAGGCTTACT+TGG - chr1_3:28866258-28866277 Msa0113160:CDS 45.0%
!!! TTTGAGTTCGGAGGCGTTTT+TGG - chr1_3:28866396-28866415 Msa0113160:CDS 45.0%
!! GAATGATGGGGTTTTTGTGG+TGG + chr1_3:28865398-28865417 None:intergenic 45.0%
!! CGAGAATGATGGGGTTTTTG+TGG + chr1_3:28865401-28865420 None:intergenic 45.0%
ATGAGGCTACGAGAATGATG+GGG + chr1_3:28865410-28865429 None:intergenic 45.0%
GATGAGGCTACGAGAATGAT+GGG + chr1_3:28865411-28865430 None:intergenic 45.0%
TGATGAGGCTACGAGAATGA+TGG + chr1_3:28865412-28865431 None:intergenic 45.0%
GTGATTAGGGCTATGGCTTA+TGG - chr1_3:28865935-28865954 Msa0113160:CDS 45.0%
! GCTTGCAGAGAGAGTTTGTT+AGG - chr1_3:28866089-28866108 Msa0113160:CDS 45.0%
!! GCAGAGAGAGTTTGTTAGGA+TGG - chr1_3:28866093-28866112 Msa0113160:CDS 45.0%
TTGTGTTGTGGAGGCTTACT+TGG - chr1_3:28866258-28866277 Msa0113160:CDS 45.0%
!!! TTTGAGTTCGGAGGCGTTTT+TGG - chr1_3:28866396-28866415 Msa0113160:CDS 45.0%
GGTTGAATCAGGGTTTCGTC+CGG - chr1_3:28866114-28866133 Msa0113160:CDS 50.0%
! TTAGGGCTATGGCGTTTTCG+AGG - chr1_3:28866155-28866174 Msa0113160:CDS 50.0%
! TTTCGAGGATGGCGCTGTTT+TGG - chr1_3:28866170-28866189 Msa0113160:CDS 50.0%
!! TTCGAGGATGGCGCTGTTTT+GGG - chr1_3:28866171-28866190 Msa0113160:CDS 50.0%
GGTTGAATCAGGGTTTCGTC+CGG - chr1_3:28866114-28866133 Msa0113160:CDS 50.0%
! TTAGGGCTATGGCGTTTTCG+AGG - chr1_3:28866155-28866174 Msa0113160:CDS 50.0%
! TTTCGAGGATGGCGCTGTTT+TGG - chr1_3:28866170-28866189 Msa0113160:CDS 50.0%
!! TTCGAGGATGGCGCTGTTTT+GGG - chr1_3:28866171-28866190 Msa0113160:CDS 50.0%
!! GGCTATGGCGTTTTCGAGGA+TGG - chr1_3:28866159-28866178 Msa0113160:CDS 55.0%
!! GGCTATGGCGTTTTCGAGGA+TGG - chr1_3:28866159-28866178 Msa0113160:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 28865320 28866516 28865320 ID=Msa0113160;Name=Msa0113160
chr1_3 mRNA 28865320 28866516 28865320 ID=Msa0113160-mRNA-1;Parent=Msa0113160;Name=Msa0113160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|398
chr1_3 exon 28865320 28866516 28865320 ID=Msa0113160-mRNA-1:exon:9545;Parent=Msa0113160-mRNA-1
chr1_3 CDS 28865320 28866516 28865320 ID=Msa0113160-mRNA-1:cds;Parent=Msa0113160-mRNA-1
Gene Sequence

>Msa0113160

ATGGAAACCATTTCCCTCTCTTCTCATAATATTCTTCTTCTCAAATACTCTCACTCCTCATCTTCATATTCATCTCCACCACAAAAACCCCATCATTCTCGTAGCCTCATCACTACCAAAAAACCAATTTTTCAGCAACCCAATTCATTACTTATTCACAATGATAAACACAAACACTCTTCTTCTTCTTCTTCTTCTTTACCTTCATTGATGTTACACTACACACAAAATGGTTACTTTCATAAATCACAAACCACATGGGAACAACTCATAAACAGTTCCTTTCACCCTTCTCTTCATTTCATTTCTAAATTATTCAAATCATACGCAAAACAACGCAAATTTGATCATATCATCAACATTCTTCATTCACTAAATTCAAAAAACTTGACCCTTTTGCCTCAGTTTTACTCATTGGCAATATCTTGTTTTGGAAATGCAGGAAACTTAAAATTGATGGAAGAAACAATCAATGAAATGGTTTCAAAGGGTTTTCAAATTGATTCAAAATTAGGTAATGAAATTCTTTTGTATTATAGTGTTTTTGGTAGTTTGAATGAAATGGAGAATGCTTATGGAAGGTTTAAGAGATCTAGGTTTTTGATTGAGGAAAATGTGATTAGGGCTATGGCTTATGGTTATACAAAGAAGAGAAAATTCTATGAATTGGGTGAGTTTGTTAGAGATATTGGTTTAGGTAGGAGAAATGTTGGGAATCTTTTGTGGAATCTTCTGTTGCTTTCTTATGCTGCTAATTTTAAGATGAAGAGCTTGCAGAGAGAGTTTGTTAGGATGGTTGAATCAGGGTTTCGTCCGGATGTTACGACGTTTAATATTAGGGCTATGGCGTTTTCGAGGATGGCGCTGTTTTGGGATCTTCATCTTAGTATTGAACATATGAGGAGTGAAAAGGTTGTTCCTGATTTGGTTACTTATGGTTGTGTTGTGGAGGCTTACTTGGATAGAAAGCTTGGAAGGAATTTGGAGTTTGTTTTGAATAAAATGGATGTGGATGATTGTCCGAGATTGTTTACAGATCCGTTTGTGTTTGAGGTTTTAGGTAAAGGTGACTTTCATTTGAGTTCGGAGGCGTTTTTGGAATACAAGACACAACAACAGAAATGGAGTTATAGGATTTTGATACAGAAATATCTTAAGAAACATTATAGGAGGAACCAGATATTTTGGAACTACTAA

Protein sequence

>Msa0113160

METISLSSHNILLLKYSHSSSSYSSPPQKPHHSRSLITTKKPIFQQPNSLLIHNDKHKHSSSSSSSLPSLMLHYTQNGYFHKSQTTWEQLINSSFHPSLHFISKLFKSYAKQRKFDHIINILHSLNSKNLTLLPQFYSLAISCFGNAGNLKLMEETINEMVSKGFQIDSKLGNEILLYYSVFGSLNEMENAYGRFKRSRFLIEENVIRAMAYGYTKKRKFYELGEFVRDIGLGRRNVGNLLWNLLLLSYAANFKMKSLQREFVRMVESGFRPDVTTFNIRAMAFSRMALFWDLHLSIEHMRSEKVVPDLVTYGCVVEAYLDRKLGRNLEFVLNKMDVDDCPRLFTDPFVFEVLGKGDFHLSSEAFLEYKTQQQKWSYRILIQKYLKKHYRRNQIFWNY*