AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386520 MtrunA17_Chr5g0400931 92.771 415 27 2 1 414 1 413 0.0 756
Msa1386520 MtrunA17_Chr3g0135011 44.262 427 195 8 1 414 1 397 2.22e-118 350
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386520 AT1G10150.1 46.377 414 193 6 3 405 4 399 1.62e-122 362
Msa1386520 AT1G59510.1 43.216 398 176 9 14 406 15 367 6.44e-108 323
Msa1386520 AT3G49790.1 41.832 404 184 5 10 413 12 364 7.44e-99 300

Find 75 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTTCTGATTTGGATTC+TGG 0.226641 tig0020830:-49276 Msa1386520:CDS
TAACCCTAGTCTCATGTTTC+GGG 0.244852 tig0020830:+49100 None:intergenic
GCAATTTGATTCAAACTATT+AGG 0.252909 tig0020830:+49579 None:intergenic
CTAACCCTAGTCTCATGTTT+CGG 0.262134 tig0020830:+49099 None:intergenic
GATAGTTCAGGTTCAGGTTC+AGG 0.314416 tig0020830:-48991 Msa1386520:CDS
TGAGACAGTTAGATCTTTCA+TGG 0.315546 tig0020830:-48794 Msa1386520:CDS
ATTGTTTACACCGGCTGGTT+CGG 0.330132 tig0020830:-49409 Msa1386520:CDS
TTGTTTACACCGGCTGGTTC+GGG 0.342746 tig0020830:-49408 Msa1386520:CDS
CCCGATTGAAACTAAGATTA+AGG 0.352373 tig0020830:+49785 None:intergenic
AGAATCGGGTTGTTCTGATT+TGG 0.353612 tig0020830:-49283 Msa1386520:CDS
TTTGCTAGGAATATTGTTCT+TGG 0.353935 tig0020830:-49360 Msa1386520:CDS
ACCTTAATCTTAGTTTCAAT+CGG 0.367438 tig0020830:-49786 Msa1386520:CDS
CCGAATGATAGTTCAGGTTC+AGG 0.374091 tig0020830:-48997 Msa1386520:CDS
TGGATTCTGGTGTGCCGAAA+TGG 0.379309 tig0020830:-49263 Msa1386520:CDS
CAAACAACATCAACCCATTT+CGG 0.385507 tig0020830:+49249 None:intergenic
TTGCTAGGAATATTGTTCTT+GGG 0.385636 tig0020830:-49359 Msa1386520:CDS
CATTGGCTATTCCTAGTAAT+AGG 0.391171 tig0020830:-48852 Msa1386520:CDS
TGCACATAATGGATTGCAAT+TGG 0.408920 tig0020830:-48639 Msa1386520:CDS
GGATTTGCTTCTGTTGTTGT+TGG 0.421636 tig0020830:-49387 Msa1386520:CDS
AATGGATTGCAATTGGGCTT+TGG 0.425168 tig0020830:-48632 Msa1386520:CDS
AAGAGATGTTTGTGATAAAG+AGG 0.428216 tig0020830:-48908 Msa1386520:CDS
TTTCTCTTTCGAGCTATGAA+TGG 0.431945 tig0020830:+49726 None:intergenic
CTTGTCAGCAACATTTGAAT+CGG 0.434555 tig0020830:+49443 None:intergenic
ATAAGTGTGGGGAGCTGATT+GGG 0.438595 tig0020830:-49221 Msa1386520:CDS
TCTAACCCGAATGATAGTTC+AGG 0.439216 tig0020830:-49003 Msa1386520:CDS
GTTTGTGATAAAGAGGATAA+AGG 0.441922 tig0020830:-48901 Msa1386520:CDS
CCTGAACCTGAACTATCATT+CGG 0.449100 tig0020830:+48997 None:intergenic
GGATTCGAGAAGTGGAGAAT+CGG 0.454786 tig0020830:-49298 Msa1386520:CDS
ATGTCCGTAAAAGAAAGAAA+TGG 0.457589 tig0020830:-49809 Msa1386520:CDS
GCACATAATGGATTGCAATT+GGG 0.461406 tig0020830:-48638 Msa1386520:CDS
CTGAACCTGAACTATCATTC+GGG 0.461737 tig0020830:+48998 None:intergenic
CGCGTTGTGCCTGCACATAA+TGG 0.463386 tig0020830:-48650 Msa1386520:CDS
CCTTAATCTTAGTTTCAATC+GGG 0.466170 tig0020830:-49785 Msa1386520:CDS
AGACTTGTTCTTGATGTGAC+TGG 0.473332 tig0020830:-48829 Msa1386520:CDS
GACTAGGGTTAGAGAAATGT+TGG 0.481635 tig0020830:-49088 Msa1386520:CDS
GATAAATTGTTTACACCGGC+TGG 0.484801 tig0020830:-49414 Msa1386520:CDS
GGATTCTGGTGTGCCGAAAT+GGG 0.490037 tig0020830:-49262 Msa1386520:CDS
GATAAGTGTGGGGAGCTGAT+TGG 0.493181 tig0020830:-49222 Msa1386520:CDS
AGAACAAGTCTCCTATTACT+AGG 0.493344 tig0020830:+48841 None:intergenic
CGATTCAAATGTTGCTGACA+AGG 0.496180 tig0020830:-49442 Msa1386520:CDS
TAAAGAGGATAAAGGTGGTT+GGG 0.499685 tig0020830:-48893 Msa1386520:CDS
GATTCGAGAAGTGGAGAATC+GGG 0.500290 tig0020830:-49297 Msa1386520:CDS
CTAACCCGAAACATGAGACT+AGG 0.506984 tig0020830:-49104 Msa1386520:CDS
CTAGTAACCACCACTTAAGC+AGG 0.514335 tig0020830:+48607 None:intergenic
GTGACTGTTGGAATTGTGAA+TGG 0.524223 tig0020830:-49501 Msa1386520:CDS
ATGTTGGTTGATGTTTGTAA+TGG 0.527695 tig0020830:-49072 Msa1386520:CDS
TCAATTGTTTGTTAGTACAT+TGG 0.532506 tig0020830:-49190 Msa1386520:CDS
TTGTTTGTAGTGATAAGTGT+GGG 0.535485 tig0020830:-49233 Msa1386520:CDS
TGGTTATCAATCCATGAGCC+AGG 0.539703 tig0020830:-49481 Msa1386520:CDS
GACTTGTTCTTGATGTGACT+GGG 0.540843 tig0020830:-48828 Msa1386520:CDS
GGAGGGTTGGATTCGAGAAG+TGG 0.544923 tig0020830:-49306 Msa1386520:CDS
TCACAATGTTCACGAGGAAG+TGG 0.550752 tig0020830:-48728 Msa1386520:CDS
AATTGCAATCCATTATGTGC+AGG 0.556385 tig0020830:+48641 None:intergenic
ATAAAGAGGATAAAGGTGGT+TGG 0.557867 tig0020830:-48894 Msa1386520:CDS
TGGTAAATGCAGTGGAGGGT+TGG 0.560656 tig0020830:-49319 Msa1386520:CDS
GTTTGATAAATTGTTTACAC+CGG 0.572672 tig0020830:-49418 Msa1386520:CDS
CAGCAAGGTTTCATCCACAT+TGG 0.581109 tig0020830:-48869 Msa1386520:CDS
GTTGTTTGTAGTGATAAGTG+TGG 0.581476 tig0020830:-49234 Msa1386520:CDS
GTGACACGTGCTGTGACTGT+TGG 0.593196 tig0020830:-49513 Msa1386520:CDS
GAAGCAAATCCCGAACCAGC+CGG 0.594026 tig0020830:+49399 None:intergenic
TAAAGGTGGTTGGGTCAGCA+AGG 0.596356 tig0020830:-48884 Msa1386520:CDS
AATTGCGAAATTATCGCGCT+CGG 0.597238 tig0020830:-49562 Msa1386520:CDS
TAACCCGAAACATGAGACTA+GGG 0.605610 tig0020830:-49103 Msa1386520:CDS
TCAGAATCTGCAGATACCAT+CGG 0.615540 tig0020830:-49654 Msa1386520:CDS
TTGTTCTTGATGTGACTGGG+AGG 0.633345 tig0020830:-48825 Msa1386520:CDS
TGTTCTTGATGTGACTGGGA+GGG 0.644691 tig0020830:-48824 Msa1386520:CDS
TCTTGTTAAAACGTCTCATG+AGG 0.649097 tig0020830:-49037 Msa1386520:CDS
GCTGGTGGTAAATGCAGTGG+AGG 0.658148 tig0020830:-49324 Msa1386520:CDS
ATTACTAGGAATAGCCAATG+TGG 0.658823 tig0020830:+48855 None:intergenic
GATGCTGGTGGTAAATGCAG+TGG 0.670323 tig0020830:-49327 Msa1386520:CDS
TGTGATAAAGAGGATAAAGG+TGG 0.671559 tig0020830:-48898 Msa1386520:CDS
ATGTGCTCACAATGTTCACG+AGG 0.700633 tig0020830:-48734 Msa1386520:CDS
CTGGTGGTAAATGCAGTGGA+GGG 0.702499 tig0020830:-49323 Msa1386520:CDS
TGAATGGTGCGTGATAAGCA+CGG 0.702699 tig0020830:+49742 None:intergenic
TGTTTGTAGTGATAAGTGTG+GGG 0.727200 tig0020830:-49232 Msa1386520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACCTTAATCTTAGTTTCAAT+CGG - tig0020830:48678-48697 Msa1386520:CDS 25.0%
! GCAATTTGATTCAAACTATT+AGG + tig0020830:48888-48907 None:intergenic 25.0%
! GTTTGATAAATTGTTTACAC+CGG - tig0020830:49046-49065 Msa1386520:CDS 25.0%
!! TCAATTGTTTGTTAGTACAT+TGG - tig0020830:49274-49293 Msa1386520:CDS 25.0%
!! ACTTATGATGAATTCTTTTC+TGG - tig0020830:49332-49351 Msa1386520:CDS 25.0%
! ACCTTAATCTTAGTTTCAAT+CGG - tig0020830:48678-48697 Msa1386520:CDS 25.0%
! GCAATTTGATTCAAACTATT+AGG + tig0020830:48888-48907 None:intergenic 25.0%
! GTTTGATAAATTGTTTACAC+CGG - tig0020830:49046-49065 Msa1386520:CDS 25.0%
!! TCAATTGTTTGTTAGTACAT+TGG - tig0020830:49274-49293 Msa1386520:CDS 25.0%
!! ACTTATGATGAATTCTTTTC+TGG - tig0020830:49332-49351 Msa1386520:CDS 25.0%
ATGTCCGTAAAAGAAAGAAA+TGG - tig0020830:48655-48674 Msa1386520:CDS 30.0%
! AGGTCCATTTCTTTCTTTTA+CGG + tig0020830:48662-48681 None:intergenic 30.0%
CCTTAATCTTAGTTTCAATC+GGG - tig0020830:48679-48698 Msa1386520:CDS 30.0%
TTTGCTAGGAATATTGTTCT+TGG - tig0020830:49104-49123 Msa1386520:CDS 30.0%
TTGCTAGGAATATTGTTCTT+GGG - tig0020830:49105-49124 Msa1386520:CDS 30.0%
TTGTTTGTAGTGATAAGTGT+GGG - tig0020830:49231-49250 Msa1386520:CDS 30.0%
! ATGTTGGTTGATGTTTGTAA+TGG - tig0020830:49392-49411 Msa1386520:CDS 30.0%
AAGAGATGTTTGTGATAAAG+AGG - tig0020830:49556-49575 Msa1386520:CDS 30.0%
GTTTGTGATAAAGAGGATAA+AGG - tig0020830:49563-49582 Msa1386520:CDS 30.0%
!!! TTTATTTTGCAAACGTTGTG+TGG - tig0020830:49695-49714 Msa1386520:CDS 30.0%
ATGTCCGTAAAAGAAAGAAA+TGG - tig0020830:48655-48674 Msa1386520:CDS 30.0%
! AGGTCCATTTCTTTCTTTTA+CGG + tig0020830:48662-48681 None:intergenic 30.0%
CCTTAATCTTAGTTTCAATC+GGG - tig0020830:48679-48698 Msa1386520:CDS 30.0%
TTTGCTAGGAATATTGTTCT+TGG - tig0020830:49104-49123 Msa1386520:CDS 30.0%
TTGCTAGGAATATTGTTCTT+GGG - tig0020830:49105-49124 Msa1386520:CDS 30.0%
TTGTTTGTAGTGATAAGTGT+GGG - tig0020830:49231-49250 Msa1386520:CDS 30.0%
! ATGTTGGTTGATGTTTGTAA+TGG - tig0020830:49392-49411 Msa1386520:CDS 30.0%
AAGAGATGTTTGTGATAAAG+AGG - tig0020830:49556-49575 Msa1386520:CDS 30.0%
GTTTGTGATAAAGAGGATAA+AGG - tig0020830:49563-49582 Msa1386520:CDS 30.0%
!!! TTTATTTTGCAAACGTTGTG+TGG - tig0020830:49695-49714 Msa1386520:CDS 30.0%
CCCGATTGAAACTAAGATTA+AGG + tig0020830:48682-48701 None:intergenic 35.0%
TTTCTCTTTCGAGCTATGAA+TGG + tig0020830:48741-48760 None:intergenic 35.0%
! ATCTTTTGTGACAATACCGA+TGG + tig0020830:48829-48848 None:intergenic 35.0%
CTTGTCAGCAACATTTGAAT+CGG + tig0020830:49024-49043 None:intergenic 35.0%
!! TTGTTGTTGGAAGTTTTGCT+AGG - tig0020830:49090-49109 Msa1386520:CDS 35.0%
CAAACAACATCAACCCATTT+CGG + tig0020830:49218-49237 None:intergenic 35.0%
GTTGTTTGTAGTGATAAGTG+TGG - tig0020830:49230-49249 Msa1386520:CDS 35.0%
TGTTTGTAGTGATAAGTGTG+GGG - tig0020830:49232-49251 Msa1386520:CDS 35.0%
TCTTGTTAAAACGTCTCATG+AGG - tig0020830:49427-49446 Msa1386520:CDS 35.0%
!!! TCAGGTTCTTATTTTGATGC+TGG - tig0020830:49491-49510 Msa1386520:CDS 35.0%
TGTGATAAAGAGGATAAAGG+TGG - tig0020830:49566-49585 Msa1386520:CDS 35.0%
ATAAAGAGGATAAAGGTGGT+TGG - tig0020830:49570-49589 Msa1386520:CDS 35.0%
TAAAGAGGATAAAGGTGGTT+GGG - tig0020830:49571-49590 Msa1386520:CDS 35.0%
ATTACTAGGAATAGCCAATG+TGG + tig0020830:49612-49631 None:intergenic 35.0%
! CATTGGCTATTCCTAGTAAT+AGG - tig0020830:49612-49631 Msa1386520:CDS 35.0%
AGAACAAGTCTCCTATTACT+AGG + tig0020830:49626-49645 None:intergenic 35.0%
TGAGACAGTTAGATCTTTCA+TGG - tig0020830:49670-49689 Msa1386520:CDS 35.0%
AATTGCAATCCATTATGTGC+AGG + tig0020830:49826-49845 None:intergenic 35.0%
!! TGCACATAATGGATTGCAAT+TGG - tig0020830:49825-49844 Msa1386520:CDS 35.0%
!! GCACATAATGGATTGCAATT+GGG - tig0020830:49826-49845 Msa1386520:CDS 35.0%
CCCGATTGAAACTAAGATTA+AGG + tig0020830:48682-48701 None:intergenic 35.0%
TTTCTCTTTCGAGCTATGAA+TGG + tig0020830:48741-48760 None:intergenic 35.0%
! ATCTTTTGTGACAATACCGA+TGG + tig0020830:48829-48848 None:intergenic 35.0%
CTTGTCAGCAACATTTGAAT+CGG + tig0020830:49024-49043 None:intergenic 35.0%
!! TTGTTGTTGGAAGTTTTGCT+AGG - tig0020830:49090-49109 Msa1386520:CDS 35.0%
CAAACAACATCAACCCATTT+CGG + tig0020830:49218-49237 None:intergenic 35.0%
GTTGTTTGTAGTGATAAGTG+TGG - tig0020830:49230-49249 Msa1386520:CDS 35.0%
TGTTTGTAGTGATAAGTGTG+GGG - tig0020830:49232-49251 Msa1386520:CDS 35.0%
TCTTGTTAAAACGTCTCATG+AGG - tig0020830:49427-49446 Msa1386520:CDS 35.0%
!!! TCAGGTTCTTATTTTGATGC+TGG - tig0020830:49491-49510 Msa1386520:CDS 35.0%
TGTGATAAAGAGGATAAAGG+TGG - tig0020830:49566-49585 Msa1386520:CDS 35.0%
ATAAAGAGGATAAAGGTGGT+TGG - tig0020830:49570-49589 Msa1386520:CDS 35.0%
TAAAGAGGATAAAGGTGGTT+GGG - tig0020830:49571-49590 Msa1386520:CDS 35.0%
ATTACTAGGAATAGCCAATG+TGG + tig0020830:49612-49631 None:intergenic 35.0%
! CATTGGCTATTCCTAGTAAT+AGG - tig0020830:49612-49631 Msa1386520:CDS 35.0%
AGAACAAGTCTCCTATTACT+AGG + tig0020830:49626-49645 None:intergenic 35.0%
TGAGACAGTTAGATCTTTCA+TGG - tig0020830:49670-49689 Msa1386520:CDS 35.0%
AATTGCAATCCATTATGTGC+AGG + tig0020830:49826-49845 None:intergenic 35.0%
!! TGCACATAATGGATTGCAAT+TGG - tig0020830:49825-49844 Msa1386520:CDS 35.0%
!! GCACATAATGGATTGCAATT+GGG - tig0020830:49826-49845 Msa1386520:CDS 35.0%
TCAGAATCTGCAGATACCAT+CGG - tig0020830:48810-48829 Msa1386520:CDS 40.0%
AATTGCGAAATTATCGCGCT+CGG - tig0020830:48902-48921 Msa1386520:CDS 40.0%
! GGAACAGTTTTCGGATTCTT+TGG - tig0020830:48923-48942 Msa1386520:CDS 40.0%
GTGACTGTTGGAATTGTGAA+TGG - tig0020830:48963-48982 Msa1386520:CDS 40.0%
CGATTCAAATGTTGCTGACA+AGG - tig0020830:49022-49041 Msa1386520:CDS 40.0%
GATAAATTGTTTACACCGGC+TGG - tig0020830:49050-49069 Msa1386520:CDS 40.0%
! GGATTTGCTTCTGTTGTTGT+TGG - tig0020830:49077-49096 Msa1386520:CDS 40.0%
!!! CTTGGGTTTTATTCAGATGC+TGG - tig0020830:49122-49141 Msa1386520:CDS 40.0%
! AGAATCGGGTTGTTCTGATT+TGG - tig0020830:49181-49200 Msa1386520:CDS 40.0%
!! GGTTGTTCTGATTTGGATTC+TGG - tig0020830:49188-49207 Msa1386520:CDS 40.0%
TAACCCGAAACATGAGACTA+GGG - tig0020830:49361-49380 Msa1386520:CDS 40.0%
TAACCCTAGTCTCATGTTTC+GGG + tig0020830:49367-49386 None:intergenic 40.0%
CTAACCCTAGTCTCATGTTT+CGG + tig0020830:49368-49387 None:intergenic 40.0%
GACTAGGGTTAGAGAAATGT+TGG - tig0020830:49376-49395 Msa1386520:CDS 40.0%
TCTAACCCGAATGATAGTTC+AGG - tig0020830:49461-49480 Msa1386520:CDS 40.0%
CTGAACCTGAACTATCATTC+GGG + tig0020830:49469-49488 None:intergenic 40.0%
CCTGAACCTGAACTATCATT+CGG + tig0020830:49470-49489 None:intergenic 40.0%
! AGACTTGTTCTTGATGTGAC+TGG - tig0020830:49635-49654 Msa1386520:CDS 40.0%
! GACTTGTTCTTGATGTGACT+GGG - tig0020830:49636-49655 Msa1386520:CDS 40.0%
!! AATGGATTGCAATTGGGCTT+TGG - tig0020830:49832-49851 Msa1386520:CDS 40.0%
TCAGAATCTGCAGATACCAT+CGG - tig0020830:48810-48829 Msa1386520:CDS 40.0%
AATTGCGAAATTATCGCGCT+CGG - tig0020830:48902-48921 Msa1386520:CDS 40.0%
! GGAACAGTTTTCGGATTCTT+TGG - tig0020830:48923-48942 Msa1386520:CDS 40.0%
GTGACTGTTGGAATTGTGAA+TGG - tig0020830:48963-48982 Msa1386520:CDS 40.0%
CGATTCAAATGTTGCTGACA+AGG - tig0020830:49022-49041 Msa1386520:CDS 40.0%
GATAAATTGTTTACACCGGC+TGG - tig0020830:49050-49069 Msa1386520:CDS 40.0%
! GGATTTGCTTCTGTTGTTGT+TGG - tig0020830:49077-49096 Msa1386520:CDS 40.0%
!!! CTTGGGTTTTATTCAGATGC+TGG - tig0020830:49122-49141 Msa1386520:CDS 40.0%
! AGAATCGGGTTGTTCTGATT+TGG - tig0020830:49181-49200 Msa1386520:CDS 40.0%
!! GGTTGTTCTGATTTGGATTC+TGG - tig0020830:49188-49207 Msa1386520:CDS 40.0%
TAACCCGAAACATGAGACTA+GGG - tig0020830:49361-49380 Msa1386520:CDS 40.0%
TAACCCTAGTCTCATGTTTC+GGG + tig0020830:49367-49386 None:intergenic 40.0%
CTAACCCTAGTCTCATGTTT+CGG + tig0020830:49368-49387 None:intergenic 40.0%
GACTAGGGTTAGAGAAATGT+TGG - tig0020830:49376-49395 Msa1386520:CDS 40.0%
TCTAACCCGAATGATAGTTC+AGG - tig0020830:49461-49480 Msa1386520:CDS 40.0%
CTGAACCTGAACTATCATTC+GGG + tig0020830:49469-49488 None:intergenic 40.0%
CCTGAACCTGAACTATCATT+CGG + tig0020830:49470-49489 None:intergenic 40.0%
! AGACTTGTTCTTGATGTGAC+TGG - tig0020830:49635-49654 Msa1386520:CDS 40.0%
! GACTTGTTCTTGATGTGACT+GGG - tig0020830:49636-49655 Msa1386520:CDS 40.0%
!! AATGGATTGCAATTGGGCTT+TGG - tig0020830:49832-49851 Msa1386520:CDS 40.0%
TGAATGGTGCGTGATAAGCA+CGG + tig0020830:48725-48744 None:intergenic 45.0%
TGGTTATCAATCCATGAGCC+AGG - tig0020830:48983-49002 Msa1386520:CDS 45.0%
! ATTTTCATCAGCCTGGCTCA+TGG + tig0020830:48997-49016 None:intergenic 45.0%
!! CGGATTGATTTTCATCAGCC+TGG + tig0020830:49004-49023 None:intergenic 45.0%
! ATTGTTTACACCGGCTGGTT+CGG - tig0020830:49055-49074 Msa1386520:CDS 45.0%
!!! GGGTTTTATTCAGATGCTGG+TGG - tig0020830:49125-49144 Msa1386520:CDS 45.0%
GGATTCGAGAAGTGGAGAAT+CGG - tig0020830:49166-49185 Msa1386520:CDS 45.0%
GATTCGAGAAGTGGAGAATC+GGG - tig0020830:49167-49186 Msa1386520:CDS 45.0%
ATAAGTGTGGGGAGCTGATT+GGG - tig0020830:49243-49262 Msa1386520:CDS 45.0%
CTAACCCGAAACATGAGACT+AGG - tig0020830:49360-49379 Msa1386520:CDS 45.0%
! CCGAATGATAGTTCAGGTTC+AGG - tig0020830:49467-49486 Msa1386520:CDS 45.0%
! GATAGTTCAGGTTCAGGTTC+AGG - tig0020830:49473-49492 Msa1386520:CDS 45.0%
CAGCAAGGTTTCATCCACAT+TGG - tig0020830:49595-49614 Msa1386520:CDS 45.0%
TTGTTCTTGATGTGACTGGG+AGG - tig0020830:49639-49658 Msa1386520:CDS 45.0%
TGTTCTTGATGTGACTGGGA+GGG - tig0020830:49640-49659 Msa1386520:CDS 45.0%
ATGTGCTCACAATGTTCACG+AGG - tig0020830:49730-49749 Msa1386520:CDS 45.0%
TCACAATGTTCACGAGGAAG+TGG - tig0020830:49736-49755 Msa1386520:CDS 45.0%
TGAATGGTGCGTGATAAGCA+CGG + tig0020830:48725-48744 None:intergenic 45.0%
TGGTTATCAATCCATGAGCC+AGG - tig0020830:48983-49002 Msa1386520:CDS 45.0%
! ATTTTCATCAGCCTGGCTCA+TGG + tig0020830:48997-49016 None:intergenic 45.0%
!! CGGATTGATTTTCATCAGCC+TGG + tig0020830:49004-49023 None:intergenic 45.0%
! ATTGTTTACACCGGCTGGTT+CGG - tig0020830:49055-49074 Msa1386520:CDS 45.0%
!!! GGGTTTTATTCAGATGCTGG+TGG - tig0020830:49125-49144 Msa1386520:CDS 45.0%
GGATTCGAGAAGTGGAGAAT+CGG - tig0020830:49166-49185 Msa1386520:CDS 45.0%
GATTCGAGAAGTGGAGAATC+GGG - tig0020830:49167-49186 Msa1386520:CDS 45.0%
ATAAGTGTGGGGAGCTGATT+GGG - tig0020830:49243-49262 Msa1386520:CDS 45.0%
CTAACCCGAAACATGAGACT+AGG - tig0020830:49360-49379 Msa1386520:CDS 45.0%
! CCGAATGATAGTTCAGGTTC+AGG - tig0020830:49467-49486 Msa1386520:CDS 45.0%
! GATAGTTCAGGTTCAGGTTC+AGG - tig0020830:49473-49492 Msa1386520:CDS 45.0%
CAGCAAGGTTTCATCCACAT+TGG - tig0020830:49595-49614 Msa1386520:CDS 45.0%
TTGTTCTTGATGTGACTGGG+AGG - tig0020830:49639-49658 Msa1386520:CDS 45.0%
TGTTCTTGATGTGACTGGGA+GGG - tig0020830:49640-49659 Msa1386520:CDS 45.0%
ATGTGCTCACAATGTTCACG+AGG - tig0020830:49730-49749 Msa1386520:CDS 45.0%
TCACAATGTTCACGAGGAAG+TGG - tig0020830:49736-49755 Msa1386520:CDS 45.0%
! ATCGCGCTCGGAACAGTTTT+CGG - tig0020830:48914-48933 Msa1386520:CDS 50.0%
! TTGTTTACACCGGCTGGTTC+GGG - tig0020830:49056-49075 Msa1386520:CDS 50.0%
GATGCTGGTGGTAAATGCAG+TGG - tig0020830:49137-49156 Msa1386520:CDS 50.0%
CTGGTGGTAAATGCAGTGGA+GGG - tig0020830:49141-49160 Msa1386520:CDS 50.0%
TGGTAAATGCAGTGGAGGGT+TGG - tig0020830:49145-49164 Msa1386520:CDS 50.0%
TGGATTCTGGTGTGCCGAAA+TGG - tig0020830:49201-49220 Msa1386520:CDS 50.0%
GGATTCTGGTGTGCCGAAAT+GGG - tig0020830:49202-49221 Msa1386520:CDS 50.0%
GATAAGTGTGGGGAGCTGAT+TGG - tig0020830:49242-49261 Msa1386520:CDS 50.0%
TAAAGGTGGTTGGGTCAGCA+AGG - tig0020830:49580-49599 Msa1386520:CDS 50.0%
! ATCGCGCTCGGAACAGTTTT+CGG - tig0020830:48914-48933 Msa1386520:CDS 50.0%
! TTGTTTACACCGGCTGGTTC+GGG - tig0020830:49056-49075 Msa1386520:CDS 50.0%
GATGCTGGTGGTAAATGCAG+TGG - tig0020830:49137-49156 Msa1386520:CDS 50.0%
CTGGTGGTAAATGCAGTGGA+GGG - tig0020830:49141-49160 Msa1386520:CDS 50.0%
TGGTAAATGCAGTGGAGGGT+TGG - tig0020830:49145-49164 Msa1386520:CDS 50.0%
TGGATTCTGGTGTGCCGAAA+TGG - tig0020830:49201-49220 Msa1386520:CDS 50.0%
GGATTCTGGTGTGCCGAAAT+GGG - tig0020830:49202-49221 Msa1386520:CDS 50.0%
GATAAGTGTGGGGAGCTGAT+TGG - tig0020830:49242-49261 Msa1386520:CDS 50.0%
TAAAGGTGGTTGGGTCAGCA+AGG - tig0020830:49580-49599 Msa1386520:CDS 50.0%
GTGACACGTGCTGTGACTGT+TGG - tig0020830:48951-48970 Msa1386520:CDS 55.0%
GAAGCAAATCCCGAACCAGC+CGG + tig0020830:49068-49087 None:intergenic 55.0%
GCTGGTGGTAAATGCAGTGG+AGG - tig0020830:49140-49159 Msa1386520:CDS 55.0%
GGAGGGTTGGATTCGAGAAG+TGG - tig0020830:49158-49177 Msa1386520:CDS 55.0%
CGCGTTGTGCCTGCACATAA+TGG - tig0020830:49814-49833 Msa1386520:CDS 55.0%
GTGACACGTGCTGTGACTGT+TGG - tig0020830:48951-48970 Msa1386520:CDS 55.0%
GAAGCAAATCCCGAACCAGC+CGG + tig0020830:49068-49087 None:intergenic 55.0%
GCTGGTGGTAAATGCAGTGG+AGG - tig0020830:49140-49159 Msa1386520:CDS 55.0%
GGAGGGTTGGATTCGAGAAG+TGG - tig0020830:49158-49177 Msa1386520:CDS 55.0%
CGCGTTGTGCCTGCACATAA+TGG - tig0020830:49814-49833 Msa1386520:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0020830 gene 48621 49865 48621 ID=Msa1386520;Name=Msa1386520
tig0020830 mRNA 48621 49865 48621 ID=Msa1386520-mRNA-1;Parent=Msa1386520;Name=Msa1386520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|414
tig0020830 exon 48621 49865 48621 ID=Msa1386520-mRNA-1:exon:10241;Parent=Msa1386520-mRNA-1
tig0020830 CDS 48621 49865 48621 ID=Msa1386520-mRNA-1:cds;Parent=Msa1386520-mRNA-1
Gene Sequence

>Msa1386520

ATGGAACTGCAATTAGTTGAAAACGCTTTCGATTATGTCCGTAAAAGAAAGAAATGGACCTTAATCTTAGTTTCAATCGGGTTTAGCAGTTACGTTAGTTACCGTGCTTATCACGCACCATTCATAGCTCGAAAGAGAAAGAAAATTTCAAAGCTTCTGAGTTCTTTAGTTTCTGTAGCAGAAGCTGTTTCAGAATCTGCAGATACCATCGGTATTGTCACAAAAGATGTCAAGAATTTTTTGCAATCTGATTCTGATCAAGTTCCTAATAGTTTGAATCAAATTGCGAAATTATCGCGCTCGGAACAGTTTTCGGATTCTTTGGTTAGTGTGACACGTGCTGTGACTGTTGGAATTGTGAATGGTTATCAATCCATGAGCCAGGCTGATGAAAATCAATCCGATTCAAATGTTGCTGACAAGGTGTTTGATAAATTGTTTACACCGGCTGGTTCGGGATTTGCTTCTGTTGTTGTTGGAAGTTTTGCTAGGAATATTGTTCTTGGGTTTTATTCAGATGCTGGTGGTAAATGCAGTGGAGGGTTGGATTCGAGAAGTGGAGAATCGGGTTGTTCTGATTTGGATTCTGGTGTGCCGAAATGGGTTGATGTTGTTTGTAGTGATAAGTGTGGGGAGCTGATTGGGAATTTTGTTCAATTGTTTGTTAGTACATTGGTTGCAGTTTATCTTGATAAGACAATGCATATCAATACTTATGATGAATTCTTTTCTGGATTAACTAACCCGAAACATGAGACTAGGGTTAGAGAAATGTTGGTTGATGTTTGTAATGGCGCTATAGAGAGTCTTGTTAAAACGTCTCATGAGGTGTTTAATAGCTCTAACCCGAATGATAGTTCAGGTTCAGGTTCAGGTTCTTATTTTGATGCTGGAGAAACTCTAAGTTCTGTAGAGACATCGTGTATTGAATCAGAAAGAGATGTTTGTGATAAAGAGGATAAAGGTGGTTGGGTCAGCAAGGTTTCATCCACATTGGCTATTCCTAGTAATAGGAGACTTGTTCTTGATGTGACTGGGAGGGTCACATTTGAGACAGTTAGATCTTTCATGGAGTTTATTTTGCAAACGTTGTGTGGTTCTGTGAGAAGATGTGCTCACAATGTTCACGAGGAAGTGGTTGAGATTATGAGATATGCTGCAGCTAAATTCTCTGTTATTGTTGCAATATGTCTCGCGTTGTGCCTGCACATAATGGATTGCAATTGGGCTTTGGTGCCTGCTTAA

Protein sequence

>Msa1386520

MELQLVENAFDYVRKRKKWTLILVSIGFSSYVSYRAYHAPFIARKRKKISKLLSSLVSVAEAVSESADTIGIVTKDVKNFLQSDSDQVPNSLNQIAKLSRSEQFSDSLVSVTRAVTVGIVNGYQSMSQADENQSDSNVADKVFDKLFTPAGSGFASVVVGSFARNIVLGFYSDAGGKCSGGLDSRSGESGCSDLDSGVPKWVDVVCSDKCGELIGNFVQLFVSTLVAVYLDKTMHINTYDEFFSGLTNPKHETRVREMLVDVCNGAIESLVKTSHEVFNSSNPNDSSGSGSGSYFDAGETLSSVETSCIESERDVCDKEDKGGWVSKVSSTLAIPSNRRLVLDVTGRVTFETVRSFMEFILQTLCGSVRRCAHNVHEEVVEIMRYAAAKFSVIVAICLALCLHIMDCNWALVPA*