AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300120 MtrunA17_Chr2g0324861 98.765 81 1 0 1 81 1 81 2.02e-54 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300120 AT5G44200.1 58.175 263 54 4 1 214 1 256 2.71e-80 241
Msa0300120 AT5G44200.2 58.175 263 54 4 1 214 1 256 2.71e-80 241

Find 84 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTCTTCTTGATTTC+CGG 0.130294 2_3:-55457770 None:intergenic
GCACAAGGCATCGGCTTATT+AGG 0.224321 2_3:+55461977 Msa0300120:three_prime_UTR
ATTAGAATTAGTTAACTTTC+CGG 0.233399 2_3:+55461946 Msa0300120:three_prime_UTR
TTGCTCTTCCGTAGTGTAAA+AGG 0.235082 2_3:-55457836 None:intergenic
GCTTAACCTTATGATATTCT+TGG 0.250162 2_3:+55461848 Msa0300120:three_prime_UTR
CTTGATTGAGTGTAACATTC+TGG 0.264656 2_3:-55461737 None:intergenic
TAAGAAGATTATCATGGGTT+TGG 0.309907 2_3:+55457891 Msa0300120:CDS
AGACTACGGCACTGGTTCTC+TGG 0.311612 2_3:+55460148 Msa0300120:CDS
GCAAAAGCCACAAGGAGTTT+TGG 0.329960 2_3:-55457923 None:intergenic
TTGATCCCGTTTGATTAATC+TGG 0.332243 2_3:+55462014 Msa0300120:three_prime_UTR
TACATACGTAGGGGTGGATA+TGG 0.332561 2_3:+55460083 Msa0300120:intron
AGATGAAATTGTTGCGATTA+GGG 0.333532 2_3:-55457556 None:intergenic
TCAAATTCTTCTTGATTTCC+GGG 0.354309 2_3:-55457769 None:intergenic
AAGATGAAATTGTTGCGATT+AGG 0.356738 2_3:-55457557 None:intergenic
TTACAAGAAGATGGAATAAC+TGG 0.359475 2_3:-55460182 None:intergenic
GGTCAGAGTTCGAGTTCTTA+TGG 0.369473 2_3:-55461368 None:intergenic
CGTCTCTGTATCTCTTCCTT+TGG 0.404261 2_3:-55461281 None:intergenic
TGCGTGATATATAGCTTTGC+TGG 0.426180 2_3:+55462046 Msa0300120:three_prime_UTR
ATTCCAGGACGGAAGACAAT+GGG 0.430858 2_3:+55459011 Msa0300120:intron
TGAAATTAAGAAGATTATCA+TGG 0.431314 2_3:+55457885 Msa0300120:CDS
AGCTTACCGGTCTAGATTCA+TGG 0.434428 2_3:-55461389 None:intergenic
TTGGCTACATCTGCTGCATA+TGG 0.441469 2_3:+55461867 Msa0300120:three_prime_UTR
TCGCGGTCGTAGTGGTGGCC+AGG 0.445048 2_3:+55459035 Msa0300120:CDS
ACCTCCTCTACCATGCCTAT+AGG 0.454914 2_3:-55461132 None:intergenic
CTTCAACCACTGTTTACGTT+GGG 0.455705 2_3:+55457806 Msa0300120:CDS
AACAATGGCGTTGTTATTCA+AGG 0.461398 2_3:+55457620 Msa0300120:exon
GACTACGGCACTGGTTCTCT+GGG 0.462057 2_3:+55460149 Msa0300120:CDS
AACAGTAACTTACAAGAAGA+TGG 0.468317 2_3:-55460191 None:intergenic
TCTTCTGGCATGATGATAAG+TGG 0.480434 2_3:+55461781 Msa0300120:three_prime_UTR
GATTAATCAAACGGGATCAA+TGG 0.485190 2_3:-55462011 None:intergenic
ACACTGCCAGATTAATCAAA+CGG 0.492261 2_3:-55462020 None:intergenic
CACTGCCAGATTAATCAAAC+GGG 0.498759 2_3:-55462019 None:intergenic
ATGCCTTGTGCATAAAGATC+CGG 0.509021 2_3:-55461965 None:intergenic
ATGGTCACGGTGGTTCCTAT+AGG 0.509501 2_3:+55461117 Msa0300120:CDS
GGAAGATGATCGTAAAAGAC+GGG 0.510144 2_3:+55461709 Msa0300120:CDS
GATCTTTATGCACAAGGCAT+CGG 0.510819 2_3:+55461968 Msa0300120:three_prime_UTR
TTAGGATCCGGCGAAGATCT+CGG 0.517857 2_3:+55457726 Msa0300120:intron
GAAATTAAGAAGATTATCAT+GGG 0.526031 2_3:+55457886 Msa0300120:CDS
ACTTCAACCACTGTTTACGT+TGG 0.539785 2_3:+55457805 Msa0300120:CDS
ATCCACGGTTTCGGGAGAGT+GGG 0.541783 2_3:+55461669 Msa0300120:CDS
GACGGAAGACAATGGGGTCG+CGG 0.546073 2_3:+55459018 Msa0300120:CDS
TCCTATAGGCATGGTAGAGG+AGG 0.546339 2_3:+55461131 Msa0300120:CDS
TGGGGATTCTGATGATGAGG+AGG 0.550856 2_3:+55461688 Msa0300120:CDS
CATGGTGGTGGCCATGGTCA+CGG 0.554994 2_3:+55461104 Msa0300120:CDS
TGGGGTCGCGGTCGTAGTGG+TGG 0.558291 2_3:+55459030 Msa0300120:CDS
ATGTAGCCAAGAATATCATA+AGG 0.560692 2_3:-55461854 None:intergenic
AATCCACGGTTTCGGGAGAG+TGG 0.561885 2_3:+55461668 Msa0300120:CDS
GGTAGACATGGTGGTGGCCA+TGG 0.565131 2_3:+55461098 Msa0300120:CDS
CACGGTGGTTCCTATAGGCA+TGG 0.570531 2_3:+55461122 Msa0300120:CDS
GATTCCAGGACGGAAGACAA+TGG 0.573376 2_3:+55459010 Msa0300120:intron
TCCACGGTTTCGGGAGAGTG+GGG 0.573957 2_3:+55461670 Msa0300120:CDS
CTCTGACCATGAATCTAGAC+CGG 0.574575 2_3:+55461383 Msa0300120:CDS
TAGGGGTGGATATGGAAAGT+TGG 0.576388 2_3:+55460091 Msa0300120:intron
AGAAAGAGTTAGAAGTACAA+AGG 0.582268 2_3:+55460117 Msa0300120:CDS
CAAATTCTTCTTGATTTCCG+GGG 0.585052 2_3:-55457768 None:intergenic
GAGTGGGGATTCTGATGATG+AGG 0.587331 2_3:+55461685 Msa0300120:CDS
CAAAGGCATCTTGTAGACTA+CGG 0.592026 2_3:+55460134 Msa0300120:CDS
TATAGAGATAGAAGATTCCC+CGG 0.593427 2_3:+55457751 Msa0300120:CDS
AATCTTGCAGATGGTAGACA+TGG 0.594151 2_3:+55461086 Msa0300120:intron
TTGAGGGCTCGTGTGTGTAG+CGG 0.595715 2_3:-55461308 None:intergenic
GGTTCCTATAGGCATGGTAG+AGG 0.598347 2_3:+55461128 Msa0300120:CDS
TCCCCACTCTCCCGAAACCG+TGG 0.598648 2_3:-55461671 None:intergenic
AGGAAGATGATCGTAAAAGA+CGG 0.598691 2_3:+55461708 Msa0300120:CDS
CAATGGGGTCGCGGTCGTAG+TGG 0.600530 2_3:+55459027 Msa0300120:CDS
AGGTGAACTCTCACCTCACG+TGG 0.601085 2_3:-55457518 None:intergenic
TATAGGAACCACCGTGACCA+TGG 0.602408 2_3:-55461115 None:intergenic
TTTCCGGATCTTTATGCACA+AGG 0.605078 2_3:+55461962 Msa0300120:three_prime_UTR
TTGGCATTATAGATTACCAA+AGG 0.609178 2_3:+55461265 Msa0300120:intron
CATCTTGTAGACTACGGCAC+TGG 0.611982 2_3:+55460140 Msa0300120:CDS
CATCAGATCATGAATCTCGA+AGG 0.626929 2_3:+55461337 Msa0300120:CDS
CTATACGCCGAGATCTTCGC+CGG 0.631598 2_3:-55457733 None:intergenic
ACATTCTCGCATAGTAACAA+TGG 0.636177 2_3:+55457605 Msa0300120:exon
CTATGCGAGAATGTTATGAG+TGG 0.651106 2_3:-55457596 None:intergenic
CAAGAAGATGGAATAACTGG+CGG 0.652818 2_3:-55460179 None:intergenic
AAGAACACCAAAACTCCTTG+TGG 0.657938 2_3:+55457916 Msa0300120:CDS
GCAGATGGTAGACATGGTGG+TGG 0.661120 2_3:+55461092 Msa0300120:intron
TAGGGCAGTGAAGTTCGAGA+AGG 0.669702 2_3:-55457538 None:intergenic
TTCCAGGACGGAAGACAATG+GGG 0.677075 2_3:+55459012 Msa0300120:intron
AAAACAAAGCAAAAGCCACA+AGG 0.680638 2_3:-55457931 None:intergenic
GGGTCAAAACAATCCACGTG+AGG 0.703236 2_3:+55457505 Msa0300120:five_prime_UTR
CATGTTCCCAACGTAAACAG+TGG 0.704637 2_3:-55457812 None:intergenic
GGTGGTGGCCATGGTCACGG+TGG 0.716513 2_3:+55461107 Msa0300120:CDS
CTTGCAGATGGTAGACATGG+TGG 0.716756 2_3:+55461089 Msa0300120:intron
GAAGATGATCGTAAAAGACG+GGG 0.737966 2_3:+55461710 Msa0300120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAATATATAACATTA+TGG - chr2_3:55459418-55459437 None:intergenic 10.0%
!!! CAATTGATATTTTAAAAATT+AGG - chr2_3:55459528-55459547 None:intergenic 10.0%
!! ATTTATGAAAAATAGTTAAA+AGG - chr2_3:55459811-55459830 None:intergenic 10.0%
!!! TACTGTTTTTTATTTTTATA+TGG + chr2_3:55460207-55460226 Msa0300120:intron 10.0%
!! TTAAGTTATTTATCCAAAAA+GGG - chr2_3:55458038-55458057 None:intergenic 15.0%
!!! ACTTTTTTATGGAAATAATA+AGG - chr2_3:55458325-55458344 None:intergenic 15.0%
!!! GACTTATTTTAACTTTTTTA+TGG - chr2_3:55458336-55458355 None:intergenic 15.0%
!! TAAAAAAGTTAAAATAAGTC+AGG + chr2_3:55458336-55458355 Msa0300120:intron 15.0%
!! AAAAAAGTTAAAATAAGTCA+GGG + chr2_3:55458337-55458356 Msa0300120:intron 15.0%
!! AAAAAATAATCAAATTGTCT+AGG - chr2_3:55459122-55459141 None:intergenic 15.0%
!! ACATAATACAATACAAAATT+GGG - chr2_3:55459668-55459687 None:intergenic 15.0%
!!! TTTTACAACAAAATTACTTT+AGG + chr2_3:55459974-55459993 Msa0300120:intron 15.0%
!!! GTTTTTAATAACAAATTATG+TGG + chr2_3:55460272-55460291 Msa0300120:intron 15.0%
!! TTTAATTAAATTTGTCTCTT+TGG + chr2_3:55461246-55461265 Msa0300120:intron 15.0%
!! AAATTAAGACAAATAATACT+TGG - chr2_3:55461628-55461647 None:intergenic 15.0%
!! TGAAATTAAGAAGATTATCA+TGG + chr2_3:55457885-55457904 Msa0300120:CDS 20.0%
!! GAAATTAAGAAGATTATCAT+GGG + chr2_3:55457886-55457905 Msa0300120:CDS 20.0%
!!! ACGTAGTTATTTTAATTTCT+AGG + chr2_3:55458000-55458019 Msa0300120:intron 20.0%
!! GTTAAGTTATTTATCCAAAA+AGG - chr2_3:55458039-55458058 None:intergenic 20.0%
!! ATTCACTTATGAAAATGTTT+GGG - chr2_3:55458470-55458489 None:intergenic 20.0%
!! TATTCACTTATGAAAATGTT+TGG - chr2_3:55458471-55458490 None:intergenic 20.0%
!! TTGTACAAATTAATGACTAA+GGG - chr2_3:55458533-55458552 None:intergenic 20.0%
!! TTTGTACAAATTAATGACTA+AGG - chr2_3:55458534-55458553 None:intergenic 20.0%
!! ATCTATTTGAATATTGTAGT+TGG + chr2_3:55458658-55458677 Msa0300120:intron 20.0%
!!! NNNNNNNNGTTGATTTTGAC+TGG + chr2_3:55458986-55459005 Msa0300120:intron 20.0%
!!! NNNNNNNGTTGATTTTGACT+GGG + chr2_3:55458987-55459006 Msa0300120:intron 20.0%
!! TGCTAAATCTTAAAAACTAT+GGG - chr2_3:55459635-55459654 None:intergenic 20.0%
!! CACATAATACAATACAAAAT+TGG - chr2_3:55459669-55459688 None:intergenic 20.0%
!! AAAATAGTTAAAAGGATATC+TGG - chr2_3:55459803-55459822 None:intergenic 20.0%
!! TTTATTTGTTTGAACATGTA+GGG - chr2_3:55459903-55459922 None:intergenic 20.0%
!! ATTTATTTGTTTGAACATGT+AGG - chr2_3:55459904-55459923 None:intergenic 20.0%
!! TCATTCAATAAAAATCAAGT+AGG - chr2_3:55460309-55460328 None:intergenic 20.0%
!!! GTTTAAATTTCTTTTCCTAA+TGG + chr2_3:55460578-55460597 Msa0300120:intron 20.0%
!! TGAAATAATAGTTTCTATAC+AGG + chr2_3:55460719-55460738 Msa0300120:intron 20.0%
!! AACAAAAAAAAAACAATGAG+AGG - chr2_3:55460971-55460990 None:intergenic 20.0%
!! CAGAAATTATAAAATGTAAC+AGG - chr2_3:55461017-55461036 None:intergenic 20.0%
!!! CTGTTACATTTTATAATTTC+TGG + chr2_3:55461015-55461034 Msa0300120:intron 20.0%
!!! TAAATCATTTGTAGTTTTGA+AGG - chr2_3:55461230-55461249 None:intergenic 20.0%
!!! ACATTTTTGTAACAAGAATA+TGG - chr2_3:55461585-55461604 None:intergenic 20.0%
!!! TTATTTGTCTTAATTTGATC+TGG + chr2_3:55461632-55461651 Msa0300120:intron 20.0%
!! TCTAATTATGAGAAAAAACA+AGG - chr2_3:55461932-55461951 None:intergenic 20.0%
!! ATTAGAATTAGTTAACTTTC+CGG + chr2_3:55461946-55461965 Msa0300120:three_prime_UTR 20.0%
!!! ATGTAATTTTAACATTGTGA+AGG - chr2_3:55462072-55462091 None:intergenic 20.0%
! TTCAAATTCTTCTTGATTTC+CGG - chr2_3:55457773-55457792 None:intergenic 25.0%
! AGTTTATAACATAAGCACTT+AGG + chr2_3:55458063-55458082 Msa0300120:intron 25.0%
!!! TTGCTAACATTTTTTTCTCA+CGG - chr2_3:55458236-55458255 None:intergenic 25.0%
! GAGAAAAAAATGTTAGCAAA+TGG + chr2_3:55458237-55458256 Msa0300120:intron 25.0%
!! GCTTCTTTTATAAATTATCC+TGG + chr2_3:55458380-55458399 Msa0300120:intron 25.0%
! AGTTATAGAAAAATGTGAGA+AGG + chr2_3:55458618-55458637 Msa0300120:intron 25.0%
! TGTTAATTGGAGTGATTTAT+TGG + chr2_3:55458692-55458711 Msa0300120:intron 25.0%
!!! TTAGTACTGATTGATGATTT+TGG + chr2_3:55458731-55458750 Msa0300120:intron 25.0%
!!! TAGTACTGATTGATGATTTT+GGG + chr2_3:55458732-55458751 Msa0300120:intron 25.0%
!!! TTAGAACTGATTGATGATTT+TGG + chr2_3:55458767-55458786 Msa0300120:intron 25.0%
!!! TAGAACTGATTGATGATTTT+GGG + chr2_3:55458768-55458787 Msa0300120:intron 25.0%
! ATGCTTGCAAATATATAAGT+GGG + chr2_3:55458844-55458863 Msa0300120:intron 25.0%
!!! NNNNNNGTTGATTTTGACTG+GGG + chr2_3:55458988-55459007 Msa0300120:intron 25.0%
!! TATGTTATTCTCTTTTCTGA+TGG - chr2_3:55459180-55459199 None:intergenic 25.0%
! AAAATAACCAAATTGTCTAG+TGG - chr2_3:55459268-55459287 None:intergenic 25.0%
!!! CTAGACAATTTGGTTATTTT+TGG + chr2_3:55459268-55459287 Msa0300120:intron 25.0%
! CTGCTAAATCTTAAAAACTA+TGG - chr2_3:55459636-55459655 None:intergenic 25.0%
! ATATCAAGAATCACAAATGA+AGG - chr2_3:55459847-55459866 None:intergenic 25.0%
! ATGAACTTTACATTTGATCA+AGG + chr2_3:55459873-55459892 Msa0300120:intron 25.0%
!! AGATTCACTATGATTTTACT+TGG + chr2_3:55459929-55459948 Msa0300120:intron 25.0%
! AACAATGTAAACATAGGTAT+GGG - chr2_3:55460393-55460412 None:intergenic 25.0%
! TAACAATGTAAACATAGGTA+TGG - chr2_3:55460394-55460413 None:intergenic 25.0%
! TCAACTAACAATGTAAACAT+AGG - chr2_3:55460399-55460418 None:intergenic 25.0%
! ATTCATACTGCACTATAAAT+AGG - chr2_3:55460508-55460527 None:intergenic 25.0%
!!! GTCTTTGAATTTTAACCATT+AGG - chr2_3:55460596-55460615 None:intergenic 25.0%
! TATGTTAGAAAGTCAATTGT+TGG + chr2_3:55460622-55460641 Msa0300120:intron 25.0%
! TTTGAATATGAATGTCATTG+TGG + chr2_3:55460679-55460698 Msa0300120:intron 25.0%
! TCTATTCTCTGCAAATTTAA+CGG + chr2_3:55461051-55461070 Msa0300120:intron 25.0%
AGATGAAATTGTTGCGATTA+GGG - chr2_3:55457559-55457578 None:intergenic 30.0%
AAGATGAAATTGTTGCGATT+AGG - chr2_3:55457560-55457579 None:intergenic 30.0%
GTACACTATTCAACTCAATT+AGG + chr2_3:55457642-55457661 Msa0300120:intron 30.0%
! TTCTTCGTTGTGAATGTTTT+AGG + chr2_3:55457708-55457727 Msa0300120:intron 30.0%
TCAAATTCTTCTTGATTTCC+GGG - chr2_3:55457772-55457791 None:intergenic 30.0%
TAAGAAGATTATCATGGGTT+TGG + chr2_3:55457891-55457910 Msa0300120:CDS 30.0%
! TAATTTCTAGGTATTACCCT+AGG + chr2_3:55458012-55458031 Msa0300120:intron 30.0%
! ATACCTGAGAAATTAGCTTA+TGG + chr2_3:55458110-55458129 Msa0300120:intron 30.0%
! TACCTGAGAAATTAGCTTAT+GGG + chr2_3:55458111-55458130 Msa0300120:intron 30.0%
!!! TGCTAACATTTTTTTCTCAC+GGG - chr2_3:55458235-55458254 None:intergenic 30.0%
TAAGCTGTAAGCTCAAAATT+TGG + chr2_3:55458284-55458303 Msa0300120:intron 30.0%
ATTATGAACATGTCATAAGC+TGG + chr2_3:55458431-55458450 Msa0300120:intron 30.0%
ATAGAAAAATGTGAGAAGGA+AGG + chr2_3:55458622-55458641 Msa0300120:intron 30.0%
! GGTGATAATGCATTGTTAAT+TGG + chr2_3:55458679-55458698 Msa0300120:intron 30.0%
GATGCTTGCAAATATATAAG+TGG + chr2_3:55458843-55458862 Msa0300120:intron 30.0%
ATATATAAGTGGGACTATAC+TGG + chr2_3:55458854-55458873 Msa0300120:intron 30.0%
TCAAATTGTCTAGGTAAACA+TGG - chr2_3:55459113-55459132 None:intergenic 30.0%
TAGTTTACCACTAGACAATT+TGG + chr2_3:55459258-55459277 Msa0300120:intron 30.0%
!! TGTGCTATTGTCTTTTCTAA+TGG - chr2_3:55459329-55459348 None:intergenic 30.0%
AAACCTTATCCCATTAAGTA+GGG + chr2_3:55459371-55459390 Msa0300120:intron 30.0%
AATTGTCTTGATTGAAGAGT+TGG + chr2_3:55459543-55459562 Msa0300120:intron 30.0%
AAAAACTATGGGATACTACA+CGG - chr2_3:55459624-55459643 None:intergenic 30.0%
!!! TCTTATGGCTTTGTTTTCTA+AGG + chr2_3:55459699-55459718 Msa0300120:intron 30.0%
TTCCTTAATTCTACATACGT+AGG + chr2_3:55460072-55460091 Msa0300120:intron 30.0%
TCCTTAATTCTACATACGTA+GGG + chr2_3:55460073-55460092 Msa0300120:intron 30.0%
! AGAAAGAGTTAGAAGTACAA+AGG + chr2_3:55460117-55460136 Msa0300120:CDS 30.0%
TTACAAGAAGATGGAATAAC+TGG - chr2_3:55460185-55460204 None:intergenic 30.0%
AACAGTAACTTACAAGAAGA+TGG - chr2_3:55460194-55460213 None:intergenic 30.0%
GTGTAAATATGCAATACATG+AGG + chr2_3:55460433-55460452 Msa0300120:intron 30.0%
AATTTAAACCCTAAACGCTA+AGG - chr2_3:55460567-55460586 None:intergenic 30.0%
GTGAATATTGATCAGAGAAA+TGG - chr2_3:55460857-55460876 None:intergenic 30.0%
AAAAAAAAACAATGAGAGGC+TGG - chr2_3:55460967-55460986 None:intergenic 30.0%
GGATGTTAGATAGTTGAAAA+AGG - chr2_3:55460996-55461015 None:intergenic 30.0%
!! AGCAATTTTAATCTTGCAGA+TGG + chr2_3:55461077-55461096 Msa0300120:intron 30.0%
AGTGCTTCTTAAAAAGTTGA+TGG - chr2_3:55461186-55461205 None:intergenic 30.0%
!!! CAACTTTTTAAGAAGCACTT+TGG + chr2_3:55461187-55461206 Msa0300120:intron 30.0%
TTGGCATTATAGATTACCAA+AGG + chr2_3:55461265-55461284 Msa0300120:intron 30.0%
! TGATCTGATGTTCTTTTTGA+GGG - chr2_3:55461327-55461346 None:intergenic 30.0%
! ATGATCTGATGTTCTTTTTG+AGG - chr2_3:55461328-55461347 None:intergenic 30.0%
! CAAATAGAAGCATAAGCTTT+CGG - chr2_3:55461521-55461540 None:intergenic 30.0%
! TTAGCAGTGATAGAAGTTTT+AGG - chr2_3:55461555-55461574 None:intergenic 30.0%
TAATACTTGGATCAACAAGA+AGG - chr2_3:55461615-55461634 None:intergenic 30.0%
GCTTAACCTTATGATATTCT+TGG + chr2_3:55461848-55461867 Msa0300120:three_prime_UTR 30.0%
ATGTAGCCAAGAATATCATA+AGG - chr2_3:55461857-55461876 None:intergenic 30.0%
ACATTCTCGCATAGTAACAA+TGG + chr2_3:55457605-55457624 Msa0300120:exon 35.0%
! AACAATGGCGTTGTTATTCA+AGG + chr2_3:55457620-55457639 Msa0300120:exon 35.0%
!!! GTTGTGAATGTTTTAGGATC+CGG + chr2_3:55457714-55457733 Msa0300120:intron 35.0%
TATAGAGATAGAAGATTCCC+CGG + chr2_3:55457751-55457770 Msa0300120:CDS 35.0%
CAAATTCTTCTTGATTTCCG+GGG - chr2_3:55457771-55457790 None:intergenic 35.0%
! GAACATGTCCTTTTACACTA+CGG + chr2_3:55457828-55457847 Msa0300120:CDS 35.0%
!!! TATGAACTTTTTTCACGAGC+TGG + chr2_3:55457862-55457881 Msa0300120:CDS 35.0%
AAAACAAAGCAAAAGCCACA+AGG - chr2_3:55457934-55457953 None:intergenic 35.0%
ATTTATCCAAAAAGGGCCTA+GGG - chr2_3:55458031-55458050 None:intergenic 35.0%
TATTTATCCAAAAAGGGCCT+AGG - chr2_3:55458032-55458051 None:intergenic 35.0%
!!! TGCTATTTTTTCGCCAAACA+GGG - chr2_3:55458089-55458108 None:intergenic 35.0%
! ACCTGAGAAATTAGCTTATG+GGG + chr2_3:55458112-55458131 Msa0300120:intron 35.0%
GATAAGCGCTTATTATGGAT+AGG + chr2_3:55458188-55458207 Msa0300120:intron 35.0%
GCTTATTATGGATAGGTGAT+AGG + chr2_3:55458195-55458214 Msa0300120:intron 35.0%
! AAATTATCCTGGAGAGCTTT+TGG + chr2_3:55458391-55458410 Msa0300120:intron 35.0%
TAATGACTAAGGGTCTGTTT+GGG - chr2_3:55458523-55458542 None:intergenic 35.0%
TTAATGACTAAGGGTCTGTT+TGG - chr2_3:55458524-55458543 None:intergenic 35.0%
TTTCACTCACATTCTATGCA+AGG - chr2_3:55458572-55458591 None:intergenic 35.0%
AGAATGTGAGTGAAATGAAG+AGG + chr2_3:55458577-55458596 Msa0300120:intron 35.0%
GAATGTGAGTGAAATGAAGA+GGG + chr2_3:55458578-55458597 Msa0300120:intron 35.0%
TAGAAAAGACAATAGCACAG+TGG + chr2_3:55459330-55459349 Msa0300120:intron 35.0%
CTACTTAATGGGATAAGGTT+TGG - chr2_3:55459372-55459391 None:intergenic 35.0%
CAAACCTTATCCCATTAAGT+AGG + chr2_3:55459370-55459389 Msa0300120:intron 35.0%
ATGTGTGTTTCCAGTTCTTA+TGG + chr2_3:55459684-55459703 Msa0300120:intron 35.0%
GAAAACAAAGCCATAAGAAC+TGG - chr2_3:55459697-55459716 None:intergenic 35.0%
!! TCTAAGGTTGCTTTAGTTCT+TGG + chr2_3:55459715-55459734 Msa0300120:intron 35.0%
ACTCGCTTGCAAATTACTTT+AGG + chr2_3:55460001-55460020 Msa0300120:intron 35.0%
CCTTAATTCTACATACGTAG+GGG + chr2_3:55460074-55460093 Msa0300120:intron 35.0%
ACAAGTAAAATGTTGAGCCA+GGG - chr2_3:55460254-55460273 None:intergenic 35.0%
AACAAGTAAAATGTTGAGCC+AGG - chr2_3:55460255-55460274 None:intergenic 35.0%
!! CTTGAAAGGGCATCAAATTA+TGG + chr2_3:55460345-55460364 Msa0300120:intron 35.0%
!! AAGGCGATATTTGCTATTGA+AGG - chr2_3:55460548-55460567 None:intergenic 35.0%
AAATATCGCCTTAGCGTTTA+GGG + chr2_3:55460556-55460575 Msa0300120:intron 35.0%
GCAATATATTGTCTTACCTG+TGG + chr2_3:55460744-55460763 Msa0300120:intron 35.0%
AAAAGATGCTTAGATTCCAC+AGG - chr2_3:55460763-55460782 None:intergenic 35.0%
TAATCTCCATACTGTATGCT+AGG + chr2_3:55460902-55460921 Msa0300120:intron 35.0%
TCAAGATTTGTAGAGCTTAC+CGG - chr2_3:55461405-55461424 None:intergenic 35.0%
CTATGTCACACTATTTGGTA+TGG - chr2_3:55461471-55461490 None:intergenic 35.0%
ACATGCTATGTCACACTATT+TGG - chr2_3:55461476-55461495 None:intergenic 35.0%
AAATAGTGTGACATAGCATG+TGG + chr2_3:55461475-55461494 Msa0300120:intron 35.0%
AGGAAAAAAATCCACGGTTT+CGG + chr2_3:55461660-55461679 Msa0300120:intron 35.0%
AGGAAGATGATCGTAAAAGA+CGG + chr2_3:55461708-55461727 Msa0300120:CDS 35.0%
CTTGATTGAGTGTAACATTC+TGG - chr2_3:55461740-55461759 None:intergenic 35.0%
! TGCATCGAAAGTTTTTCTTC+TGG + chr2_3:55461766-55461785 Msa0300120:three_prime_UTR 35.0%
GATTAATCAAACGGGATCAA+TGG - chr2_3:55462014-55462033 None:intergenic 35.0%
TTGATCCCGTTTGATTAATC+TGG + chr2_3:55462014-55462033 Msa0300120:three_prime_UTR 35.0%
ACACTGCCAGATTAATCAAA+CGG - chr2_3:55462023-55462042 None:intergenic 35.0%
CTATGCGAGAATGTTATGAG+TGG - chr2_3:55457599-55457618 None:intergenic 40.0%
ACTTCAACCACTGTTTACGT+TGG + chr2_3:55457805-55457824 Msa0300120:CDS 40.0%
CTTCAACCACTGTTTACGTT+GGG + chr2_3:55457806-55457825 Msa0300120:CDS 40.0%
TTGCTCTTCCGTAGTGTAAA+AGG - chr2_3:55457839-55457858 None:intergenic 40.0%
AAGAACACCAAAACTCCTTG+TGG + chr2_3:55457916-55457935 Msa0300120:CDS 40.0%
!!! CTGCTATTTTTTCGCCAAAC+AGG - chr2_3:55458090-55458109 None:intergenic 40.0%
! CCTGAGAAATTAGCTTATGG+GGG + chr2_3:55458113-55458132 Msa0300120:intron 40.0%
AGCTGTCTTATAGCTGATAG+CGG + chr2_3:55458166-55458185 Msa0300120:intron 40.0%
! TAGCGGATAAGCGCTTATTA+TGG + chr2_3:55458183-55458202 Msa0300120:intron 40.0%
CTTATTTCCAAAAGCTCTCC+AGG - chr2_3:55458401-55458420 None:intergenic 40.0%
ATGCACTAAAGTTGTTCACC+TGG - chr2_3:55459056-55459075 None:intergenic 40.0%
CAACCCTACTTAATGGGATA+AGG - chr2_3:55459377-55459396 None:intergenic 40.0%
CTTATCCCATTAAGTAGGGT+TGG + chr2_3:55459375-55459394 Msa0300120:intron 40.0%
TGTAGCCAACCCTACTTAAT+GGG - chr2_3:55459383-55459402 None:intergenic 40.0%
ATGTAGCCAACCCTACTTAA+TGG - chr2_3:55459384-55459403 None:intergenic 40.0%
!! ATTAAGTAGGGTTGGCTACA+TGG + chr2_3:55459383-55459402 Msa0300120:intron 40.0%
CCTGCAAACATTAACAGCAT+CGG - chr2_3:55459751-55459770 None:intergenic 40.0%
CCCCTACGTATGTAGAATTA+AGG - chr2_3:55460077-55460096 None:intergenic 40.0%
TAATTCTACATACGTAGGGG+TGG + chr2_3:55460077-55460096 Msa0300120:intron 40.0%
!! CAAAGGCATCTTGTAGACTA+CGG + chr2_3:55460134-55460153 Msa0300120:CDS 40.0%
CAAGAAGATGGAATAACTGG+CGG - chr2_3:55460182-55460201 None:intergenic 40.0%
!! AGCAACAACACTGACTTGAA+AGG + chr2_3:55460331-55460350 Msa0300120:intron 40.0%
!! GCAACAACACTGACTTGAAA+GGG + chr2_3:55460332-55460351 Msa0300120:intron 40.0%
CTATAAATAGGATGCAGGAG+AGG - chr2_3:55460496-55460515 None:intergenic 40.0%
CTGCACTATAAATAGGATGC+AGG - chr2_3:55460501-55460520 None:intergenic 40.0%
CAAATATCGCCTTAGCGTTT+AGG + chr2_3:55460555-55460574 Msa0300120:intron 40.0%
GTCATTGTGGATGACTAAGT+TGG + chr2_3:55460692-55460711 Msa0300120:intron 40.0%
GTTCATAAGACCAACACATG+TGG - chr2_3:55460937-55460956 None:intergenic 40.0%
AATCTTGCAGATGGTAGACA+TGG + chr2_3:55461086-55461105 Msa0300120:intron 40.0%
CATCAGATCATGAATCTCGA+AGG + chr2_3:55461337-55461356 Msa0300120:CDS 40.0%
ACACTATTTGGTATGGCAAC+TGG - chr2_3:55461464-55461483 None:intergenic 40.0%
! CTTAATTTGATCTGGTTGCC+AGG + chr2_3:55461640-55461659 Msa0300120:intron 40.0%
GTTGCCAGGAAAAAAATCCA+CGG + chr2_3:55461654-55461673 Msa0300120:intron 40.0%
!!! GAAACCGTGGATTTTTTTCC+TGG - chr2_3:55461661-55461680 None:intergenic 40.0%
GGAAAAAAATCCACGGTTTC+GGG + chr2_3:55461661-55461680 Msa0300120:intron 40.0%
GGAAGATGATCGTAAAAGAC+GGG + chr2_3:55461709-55461728 Msa0300120:CDS 40.0%
GAAGATGATCGTAAAAGACG+GGG + chr2_3:55461710-55461729 Msa0300120:CDS 40.0%
TCTTCTGGCATGATGATAAG+TGG + chr2_3:55461781-55461800 Msa0300120:three_prime_UTR 40.0%
TTTCCGGATCTTTATGCACA+AGG + chr2_3:55461962-55461981 Msa0300120:three_prime_UTR 40.0%
ATGCCTTGTGCATAAAGATC+CGG - chr2_3:55461968-55461987 None:intergenic 40.0%
GATCTTTATGCACAAGGCAT+CGG + chr2_3:55461968-55461987 Msa0300120:three_prime_UTR 40.0%
CACTGCCAGATTAATCAAAC+GGG - chr2_3:55462022-55462041 None:intergenic 40.0%
! TGCGTGATATATAGCTTTGC+TGG + chr2_3:55462046-55462065 Msa0300120:three_prime_UTR 40.0%
CATGTTCCCAACGTAAACAG+TGG - chr2_3:55457815-55457834 None:intergenic 45.0%
! GCAAAAGCCACAAGGAGTTT+TGG - chr2_3:55457926-55457945 None:intergenic 45.0%
! GTATTACCCTAGGCCCTTTT+TGG + chr2_3:55458022-55458041 Msa0300120:intron 45.0%
ATAAGCACTTAGGCCCTGTT+TGG + chr2_3:55458073-55458092 Msa0300120:intron 45.0%
CCCCCATAAGCTAATTTCTC+AGG - chr2_3:55458116-55458135 None:intergenic 45.0%
TATGGGGGATGAGCTTATAG+CGG + chr2_3:55458128-55458147 Msa0300120:intron 45.0%
CTACTCTCGTGAAGATACTG+AGG + chr2_3:55458821-55458840 Msa0300120:intron 45.0%
!!! TGATTTTGACTGGGGATTCC+AGG + chr2_3:55458996-55459015 Msa0300120:intron 45.0%
ATTCCAGGACGGAAGACAAT+GGG + chr2_3:55459011-55459030 Msa0300120:intron 45.0%
CCGATGCTGTTAATGTTTGC+AGG + chr2_3:55459748-55459767 Msa0300120:intron 45.0%
TACATACGTAGGGGTGGATA+TGG + chr2_3:55460083-55460102 Msa0300120:intron 45.0%
TAGGGGTGGATATGGAAAGT+TGG + chr2_3:55460091-55460110 Msa0300120:intron 45.0%
TATGGATCTTCAGCTACTCG+TGG + chr2_3:55460225-55460244 Msa0300120:intron 45.0%
! ACTGAAAGAGTGCACATCGT+TGG - chr2_3:55460465-55460484 None:intergenic 45.0%
CTTCAGCCTAGCATACAGTA+TGG - chr2_3:55460911-55460930 None:intergenic 45.0%
! GCTGAAGTATCCACATGTGT+TGG + chr2_3:55460924-55460943 Msa0300120:intron 45.0%
CGTCTCTGTATCTCTTCCTT+TGG - chr2_3:55461284-55461303 None:intergenic 45.0%
! GGTCAGAGTTCGAGTTCTTA+TGG - chr2_3:55461371-55461390 None:intergenic 45.0%
CTCTGACCATGAATCTAGAC+CGG + chr2_3:55461383-55461402 Msa0300120:CDS 45.0%
AGCTTACCGGTCTAGATTCA+TGG - chr2_3:55461392-55461411 None:intergenic 45.0%
TTGGCTACATCTGCTGCATA+TGG + chr2_3:55461867-55461886 Msa0300120:three_prime_UTR 45.0%
GGGTCAAAACAATCCACGTG+AGG + chr2_3:55457505-55457524 Msa0300120:five_prime_UTR 50.0%
TAGGGCAGTGAAGTTCGAGA+AGG - chr2_3:55457541-55457560 None:intergenic 50.0%
TTAGGATCCGGCGAAGATCT+CGG + chr2_3:55457726-55457745 Msa0300120:intron 50.0%
TTTGACTGGGGATTCCAGGA+CGG + chr2_3:55459000-55459019 Msa0300120:intron 50.0%
GATTCCAGGACGGAAGACAA+TGG + chr2_3:55459010-55459029 Msa0300120:intron 50.0%
TTCCAGGACGGAAGACAATG+GGG + chr2_3:55459012-55459031 Msa0300120:intron 50.0%
CATCTTGTAGACTACGGCAC+TGG + chr2_3:55460140-55460159 Msa0300120:CDS 50.0%
! GAAAGAGTGCACATCGTTGG+AGG - chr2_3:55460462-55460481 None:intergenic 50.0%
AATAGGATGCAGGAGAGGAC+AGG - chr2_3:55460491-55460510 None:intergenic 50.0%
CTTGCAGATGGTAGACATGG+TGG + chr2_3:55461089-55461108 Msa0300120:intron 50.0%
TATAGGAACCACCGTGACCA+TGG - chr2_3:55461118-55461137 None:intergenic 50.0%
ATGGTCACGGTGGTTCCTAT+AGG + chr2_3:55461117-55461136 Msa0300120:CDS 50.0%
GGTTCCTATAGGCATGGTAG+AGG + chr2_3:55461128-55461147 Msa0300120:CDS 50.0%
TCCTATAGGCATGGTAGAGG+AGG + chr2_3:55461131-55461150 Msa0300120:CDS 50.0%
ACCTCCTCTACCATGCCTAT+AGG - chr2_3:55461135-55461154 None:intergenic 50.0%
GTGTGACATAGCATGTGGTG+TGG + chr2_3:55461480-55461499 Msa0300120:intron 50.0%
! GAGTGGGGATTCTGATGATG+AGG + chr2_3:55461685-55461704 Msa0300120:CDS 50.0%
! TGGGGATTCTGATGATGAGG+AGG + chr2_3:55461688-55461707 Msa0300120:CDS 50.0%
!! GCACAAGGCATCGGCTTATT+AGG + chr2_3:55461977-55461996 Msa0300120:three_prime_UTR 50.0%
AGGTGAACTCTCACCTCACG+TGG - chr2_3:55457521-55457540 None:intergenic 55.0%
CTATACGCCGAGATCTTCGC+CGG - chr2_3:55457736-55457755 None:intergenic 55.0%
!! AGACTACGGCACTGGTTCTC+TGG + chr2_3:55460148-55460167 Msa0300120:CDS 55.0%
!! GACTACGGCACTGGTTCTCT+GGG + chr2_3:55460149-55460168 Msa0300120:CDS 55.0%
! ACAATGAGAGGCTGGTTGCG+TGG - chr2_3:55460959-55460978 None:intergenic 55.0%
GCAGATGGTAGACATGGTGG+TGG + chr2_3:55461092-55461111 Msa0300120:intron 55.0%
CACGGTGGTTCCTATAGGCA+TGG + chr2_3:55461122-55461141 Msa0300120:CDS 55.0%
TTGAGGGCTCGTGTGTGTAG+CGG - chr2_3:55461311-55461330 None:intergenic 55.0%
AATCCACGGTTTCGGGAGAG+TGG + chr2_3:55461668-55461687 Msa0300120:CDS 55.0%
ATCCACGGTTTCGGGAGAGT+GGG + chr2_3:55461669-55461688 Msa0300120:CDS 55.0%
GACCCCATTGTCTTCCGTCC+TGG - chr2_3:55459017-55459036 None:intergenic 60.0%
GACGGAAGACAATGGGGTCG+CGG + chr2_3:55459018-55459037 Msa0300120:CDS 60.0%
TCAGCTACTCGTGGCAACCC+TGG + chr2_3:55460234-55460253 Msa0300120:intron 60.0%
!! GGTAGACATGGTGGTGGCCA+TGG + chr2_3:55461098-55461117 Msa0300120:CDS 60.0%
!! CATGGTGGTGGCCATGGTCA+CGG + chr2_3:55461104-55461123 Msa0300120:CDS 60.0%
TCCACGGTTTCGGGAGAGTG+GGG + chr2_3:55461670-55461689 Msa0300120:CDS 60.0%
CAATGGGGTCGCGGTCGTAG+TGG + chr2_3:55459027-55459046 Msa0300120:CDS 65.0%
TCCCCACTCTCCCGAAACCG+TGG - chr2_3:55461674-55461693 None:intergenic 65.0%
TGGGGTCGCGGTCGTAGTGG+TGG + chr2_3:55459030-55459049 Msa0300120:CDS 70.0%
TCGCGGTCGTAGTGGTGGCC+AGG + chr2_3:55459035-55459054 Msa0300120:CDS 70.0%
! GGTGGTGGCCATGGTCACGG+TGG + chr2_3:55461107-55461126 Msa0300120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55457501 55462127 55457501 ID=Msa0300120;Name=Msa0300120
chr2_3 mRNA 55457501 55462127 55457501 ID=Msa0300120-mRNA-1;Parent=Msa0300120;Name=Msa0300120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=123|0.66|0.71|1|0.66|0.85|7|391|215
chr2_3 exon 55457501 55457641 55457501 ID=Msa0300120-mRNA-1:exon:17704;Parent=Msa0300120-mRNA-1
chr2_3 exon 55457730 55457953 55457730 ID=Msa0300120-mRNA-1:exon:17705;Parent=Msa0300120-mRNA-1
chr2_3 exon 55459018 55459056 55459018 ID=Msa0300120-mRNA-1:exon:17706;Parent=Msa0300120-mRNA-1
chr2_3 exon 55460094 55460200 55460094 ID=Msa0300120-mRNA-1:exon:17707;Parent=Msa0300120-mRNA-1
chr2_3 exon 55461096 55461152 55461096 ID=Msa0300120-mRNA-1:exon:17708;Parent=Msa0300120-mRNA-1
chr2_3 exon 55461277 55461404 55461277 ID=Msa0300120-mRNA-1:exon:17709;Parent=Msa0300120-mRNA-1
chr2_3 exon 55461662 55462127 55461662 ID=Msa0300120-mRNA-1:exon:17710;Parent=Msa0300120-mRNA-1
chr2_3 five_prime_UTR 55457501 55457623 55457501 ID=Msa0300120-mRNA-1:five_prime_utr;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55457624 55457641 55457624 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55457730 55457953 55457730 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55459018 55459056 55459018 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55460094 55460200 55460094 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55461096 55461152 55461096 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55461277 55461404 55461277 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 CDS 55461662 55461736 55461662 ID=Msa0300120-mRNA-1:cds;Parent=Msa0300120-mRNA-1
chr2_3 three_prime_UTR 55461737 55462127 55461737 ID=Msa0300120-mRNA-1:three_prime_utr;Parent=Msa0300120-mRNA-1
Gene Sequence

>Msa0300120

ATGGCGTTGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATAGAGATAGAAGATTCCCCGGAAATCAAGAAGAATTTGAACATGCGCTCAAAACTTCAACCACTGTTTACGTTGGGAACATGTCCTTTTACACTACGGAAGAGCAAATTTATGAACTTTTTTCACGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAACACCAAAACTCCTTGTGGCTTTTGCTTTGTTTTGACGGAAGACAATGGGGTCGCGGTCGTAGTGGTGGCCAGGGGTGGATATGGAAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCATCTTGTAGACTACGGCACTGGTTCTCTGGGATCTTTTCCGCCAGTTATTCCATCTTCTTATGGTAGACATGGTGGTGGCCATGGTCACGGTGGTTCCTATAGGCATGGTAGAGGAGATTACCAAAGGAAGAGATACAGAGACGATGACCGCTACACACACGAGCCCTCAAAAAGAACATCAGATCATGAATCTCGAAGGAACTCTGACCATAAGAACTCGAACTCTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGGGAGAGTGGGGATTCTGATGATGAGGAGGAAGATGATCGTAAAAGACGGGGTTAA

Protein sequence

>Msa0300120

MALLFKDPAKISAYRDRRFPGNQEEFEHALKTSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLTEDNGVAVVVVARGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGGSYRHGRGDYQRKRYRDDDRYTHEPSKRTSDHESRRNSDHKNSNSDHESRPEKNPRFRESGDSDDEEEDDRKRRG*