AlfalfaGEDB | Msa0035150

M. sativa cultivar zhongmu-4 / Msa0035150

KEGG: -
GO: GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
PFAM: PF13920.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035150	XP_013469301.1	99.060	851	8	0	1	851	1	851	0.0	1711

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035150	sp\|P29503\|NEUR_DROME	58.491	53	20	1	799	849	701	753	2.34e-12	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035150	G8A1I5	99.060	851	8	0	1	851	1	851	0.0	1711

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa0035150	0.809183	2.146421e-50	-8.615850e-47
Msa0006110	Msa0035150	0.825117	5.582640e-54	-8.615850e-47
Msa0006390	Msa0035150	0.827898	1.213057e-54	-8.615850e-47
Msa0015390	Msa0035150	0.817808	2.721487e-52	-8.615850e-47
Msa0017510	Msa0035150	0.809300	2.025624e-50	-8.615850e-47
Msa0018650	Msa0035150	0.805234	1.473219e-49	-8.615850e-47
Msa0020410	Msa0035150	0.804296	2.312022e-49	-8.615850e-47
Msa0021210	Msa0035150	0.806097	9.703544e-50	-8.615850e-47
Msa0026430	Msa0035150	0.810243	1.270012e-50	-8.615850e-47
Msa0026910	Msa0035150	0.826543	2.560233e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035150	MtrunA17_Chr1g0197481	99.060	851	8	0	1	851	1	851	0.0	1711
Msa0035150	MtrunA17_Chr4g0027771	51.297	347	142	9	514	851	490	818	3.15e-96	319
Msa0035150	MtrunA17_Chr4g0027771	48.711	349	166	7	110	450	1	344	2.36e-70	248
Msa0035150	MtrunA17_Chr2g0320491	48.907	366	154	7	513	850	475	835	1.45e-92	310
Msa0035150	MtrunA17_Chr2g0320491	44.476	353	163	9	110	453	1	329	2.40e-57	211
Msa0035150	MtrunA17_Chr2g0292551	51.385	325	129	7	540	844	415	730	6.50e-84	285
Msa0035150	MtrunA17_Chr2g0292551	42.920	226	106	7	233	453	62	269	1.06e-30	129
Msa0035150	MtrunA17_Chr2g0296581	41.606	137	65	4	714	848	789	912	1.21e-19	94.7
Msa0035150	MtrunA17_Chr4g0052941	35.433	127	70	1	723	849	701	815	2.22e-16	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0035150	AT5G04460.6	63.647	883	269	17	1	851	1	863	0.0	970
Msa0035150	AT5G04460.3	63.647	883	269	17	1	851	1	863	0.0	970
Msa0035150	AT5G04460.1	63.647	883	269	17	1	851	1	863	0.0	970
Msa0035150	AT5G04460.4	63.647	883	269	17	1	851	1	863	0.0	970
Msa0035150	AT5G04460.2	62.604	845	264	17	1	813	1	825	0.0	886
Msa0035150	AT5G04460.5	60.132	755	249	17	1	723	1	735	0.0	721
Msa0035150	AT2G27950.2	44.809	366	178	8	491	851	493	839	1.26e-87	296
Msa0035150	AT2G27950.2	47.354	359	180	7	110	462	1	356	6.83e-72	253
Msa0035150	AT2G27950.3	44.809	366	178	8	491	851	493	839	1.26e-87	296
Msa0035150	AT2G27950.3	47.354	359	180	7	110	462	1	356	6.83e-72	253

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Find 287 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCCAGAAATTCAGCT+GGG	0.603834	1_1:+63253786	Msa0035150:CDS
AAAGATTTGTAAAGAATAAT+TGG	0.151176	1_1:-63256100	None:intergenic
AAAGGAAAATTGGAAGGACA+TGG	0.584700	1_1:+63255899	Msa0035150:three_prime_UTR
AAAGGATGAGGGAAAGGTTG+AGG	0.550511	1_1:+63250791	Msa0035150:CDS
AAATAGACGTACCTGAGAGT+GGG	0.667751	1_1:-63249883	None:intergenic
AAATCATCTCAGAGATGGAA+GGG	0.578754	1_1:+63253742	Msa0035150:CDS
AAATGTTGGTTTAGCAATTC+GGG	0.376281	1_1:+63250196	Msa0035150:five_prime_UTR
AACCACAGATCAGAATGGCT+TGG	0.550172	1_1:+63251105	Msa0035150:CDS
AACCGCTCAGCTGGTGAAAA+TGG	0.300085	1_1:+63255368	Msa0035150:CDS
AACCTCACTGATTGTATAAT+TGG	0.163159	1_1:+63256025	Msa0035150:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATAAGGAAAAGGAAGAA+AGG	-	chr1_1:63249747-63249766	None:intergenic	30.0%
AAAATGGAAATTAGGATCAG+CGG	-	chr1_1:63249926-63249945	None:intergenic	30.0%
GCGTAATCTGAATATGAAAA+TGG	-	chr1_1:63249942-63249961	None:intergenic	30.0%
TGAAAGCCATAAGAAAAAGA+GGG	-	chr1_1:63250101-63250120	None:intergenic	30.0%
ATGAAAGCCATAAGAAAAAG+AGG	-	chr1_1:63250102-63250121	None:intergenic	30.0%
GGGTTCTATATATTGTATAG+TGG	+	chr1_1:63250242-63250261	Msa0035150:five_prime_UTR	30.0%
AGATGATAACTACTATTGAG+AGG	+	chr1_1:63250572-63250591	Msa0035150:CDS	30.0%
AGGATGAACATATGTTGAAT+CGG	+	chr1_1:63250761-63250780	Msa0035150:CDS	30.0%
ATGCAGATCATTCCATATTA+AGG	-	chr1_1:63251654-63251673	None:intergenic	30.0%
TCAAAGAAATACTACATGGA+TGG	-	chr1_1:63251865-63251884	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	63249736	63256200	63249736	ID=Msa0035150;Name=Msa0035150
chr1_1	mRNA	63249736	63256200	63249736	ID=Msa0035150-mRNA-1;Parent=Msa0035150;Name=Msa0035150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=413\|1\|1\|1\|0.85\|0.75\|8\|302\|851
chr1_1	exon	63249736	63249893	63249736	ID=Msa0035150-mRNA-1:exon:20085;Parent=Msa0035150-mRNA-1
chr1_1	exon	63250034	63251437	63250034	ID=Msa0035150-mRNA-1:exon:20086;Parent=Msa0035150-mRNA-1
chr1_1	exon	63252545	63252660	63252545	ID=Msa0035150-mRNA-1:exon:20087;Parent=Msa0035150-mRNA-1
chr1_1	exon	63253412	63254002	63253412	ID=Msa0035150-mRNA-1:exon:20088;Parent=Msa0035150-mRNA-1
chr1_1	exon	63254332	63254644	63254332	ID=Msa0035150-mRNA-1:exon:20089;Parent=Msa0035150-mRNA-1
chr1_1	exon	63255224	63255389	63255224	ID=Msa0035150-mRNA-1:exon:20090;Parent=Msa0035150-mRNA-1
chr1_1	exon	63255571	63255673	63255571	ID=Msa0035150-mRNA-1:exon:20091;Parent=Msa0035150-mRNA-1
chr1_1	exon	63255781	63256200	63255781	ID=Msa0035150-mRNA-1:exon:20092;Parent=Msa0035150-mRNA-1
chr1_1	five_prime_UTR	63249736	63249893	63249736	ID=Msa0035150-mRNA-1:five_prime_utr;Parent=Msa0035150-mRNA-1
chr1_1	five_prime_UTR	63250034	63250288	63250034	ID=Msa0035150-mRNA-1:five_prime_utr;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63250289	63251437	63250289	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63252545	63252660	63252545	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63253412	63254002	63253412	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63254332	63254644	63254332	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63255224	63255389	63255224	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63255571	63255673	63255571	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	CDS	63255781	63255898	63255781	ID=Msa0035150-mRNA-1:cds;Parent=Msa0035150-mRNA-1
chr1_1	three_prime_UTR	63255899	63256200	63255899	ID=Msa0035150-mRNA-1:three_prime_utr;Parent=Msa0035150-mRNA-1

Gene Sequence

>Msa0035150

ATGACAGATTTTCAATCACTACAGCAGAAGCCTGAATCTGCTGATGCTCATTCTGATTTTGACCATGGATTGGATGACTTTATGCGTGGTCATTTGGACGATTGTATGTCATTTGCTTCGTGTAGTTCTTCCCGTGTACAAGATGATGAGGATGACGAGAGTGATCAGTTGGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGAGATGATTTAGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCCGACAGGCGCAGGAGATGATAACTACTATTGAGAGGAGGAATCGTGAGTCTGAGTTGATGGCGCTTGCGGGTTTACATACGGTGTCCATGTTGGATTCCTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGTCAGGAGGGGGCTGTTGAGAGACCGAGCACTCAGGCGTCTTCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATATGTTGAATCGGGCACGTGAAAGGATGAGGGAAAGGTTGAGGCAGCAAAGAAGTTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGCCGAGGAAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCTCATGATCAGATTGGATCACGGAATGCACTTGGGAATCGTGATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCGTTCATCTAATGTGAGCCAAAGAAACACCAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAACAGCGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGTAAGTCAATCTGCTCCAGCTGATCGAACTCGTGATATTGCAGCTGACCATGATGAACGTCAACCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTTGAGGGTTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAACGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTAAGACAACGGCACACGGTCTCTGGTATAAGGGAGGGGTTTCGCTCAAGATTAGAGAATATTGTCCGTGGTCAATCAAGCACCAATCCTGATGCCACATCAAATAGTAACATTGATGAAACAAGACATGATGAGAACCAATCAAACAATCTCATAGATGCACAACAAGAAAATTATGACCAAGAGCAGATTAGGAGCCTGGAAACTGATGCACGTCAGTTTCCTATTCAAACAGGAACTTCGGAGAGTAGCACAAGTGAACCTATTAATTGGCAAGAAGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTACCGAAAATGGGGGAGGAAACTGGCCGCAGAGAATTAATGGTACATTAAATCATCTCAGAGATGGAAGGGAAGCCAGTGATTGGCCACAAGAAACTCCCAGAAATTCAGCTGGGGATGATCCTCATCCACTGGAAGCTCAAAGAATTTGGCAGGACGATAACACAAGGGAAGCTGTTGGTAATTGGTCTGAAGGGCCTTCTGCAGCTTCAAGGAATCGCCGTAGTGTTCCTTTTAGAAGGTTCAATAGATTTCATCCTCCTGACGATGATAATGTATACAGTATGGAGCTAAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGGAGTGGTTTCCGTGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTACGCCGACTCCTGCCTCACCGGAACGAGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGACAGCATGAAGCCATTAACAGACCTTCACCGGTGTTGCCTTCTCCACCAGTTCCCCCGCCACAACCACTTTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATACCATGCACCGCTCTGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCCCTCAACCGCTCAGCTGGTGAAAATGGATTGGCTGCTGGGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTATGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCTAGTGAGTTAATTCGTGGAGGAGGTAAGTGTCCTTTATGCCGAGCGCCAATTGTTGAGGTGGTCAGAGCATATTCCATACTGTAA

Protein sequence

>Msa0035150

MTDFQSLQQKPESADAHSDFDHGLDDFMRGHLDDCMSFASCSSSRVQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHMLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNALGNRDGSSREQSPDLGEVERERVRQIVRGWMESGISDRSSNVSQRNTNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSQSAPADRTRDIAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELEGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQSSTNPDATSNSNIDETRHDENQSNNLIDAQQENYDQEQIRSLETDARQFPIQTGTSESSTSEPINWQEASNQGGNWQEQITENGGGNWPQRINGTLNHLRDGREASDWPQETPRNSAGDDPHPLEAQRIWQDDNTREAVGNWSEGPSAASRNRRSVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPTPTPASPERDPDQQGDERNEGQHEAINRPSPVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLAAGTSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCASELIRGGGKCPLCRAPIVEVVRAYSIL*