AlfalfaGEDB | Msa0085780

M. sativa cultivar zhongmu-4 / Msa0085780

KEGG: K02964
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00416.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0085780	XP_003592049.1	100.000	152	0	0	1	152	1	152	5.57e-108	314

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0085780	sp\|P34788\|RS18_ARATH	92.763	152	11	0	1	152	1	152	1.93e-104	298

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0085780	B7FMJ8	100.000	152	0	0	1	152	1	152	2.66e-108	314

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032780	Msa0085780	0.804982	1.663167e-49	-8.615850e-47
Msa0074030	Msa0085780	0.827633	1.404454e-54	-8.615850e-47
Msa0085780	Msa0116670	0.830291	3.190555e-55	-8.615850e-47
Msa0085780	Msa0140850	0.814171	1.765079e-51	-8.615850e-47
Msa0085780	Msa0173530	0.832069	1.166460e-55	-8.615850e-47
Msa0085780	Msa0210360	0.831778	1.376295e-55	-8.615850e-47
Msa0085780	Msa0222730	0.829301	5.558138e-55	-8.615850e-47
Msa0085780	Msa0229150	0.803117	4.063118e-49	-8.615850e-47
Msa0085780	Msa0230490	0.816245	6.107290e-52	-8.615850e-47
Msa0085780	Msa0250820	0.818891	1.547019e-52	-8.615850e-47
Msa0085780	Msa0257450	0.811943	5.436571e-51	-8.615850e-47
Msa0085780	Msa0264010	0.827495	1.516211e-54	-8.615850e-47
Msa0085780	Msa0481850	0.802486	5.484628e-49	-8.615850e-47
Msa0085780	Msa0588360	0.835019	2.141069e-56	-8.615850e-47
Msa0085780	Msa0712610	0.802292	6.013136e-49	-8.615850e-47
Msa0085780	Msa0888810	0.803382	3.579696e-49	-8.615850e-47
Msa0085780	Msa1078870	0.800962	1.126883e-48	-8.615850e-47
Msa0085780	Msa1080350	0.822374	2.451614e-53	-8.615850e-47
Msa0085780	Msa1125860	0.821224	4.523978e-53	-8.615850e-47
Msa0085780	Msa1126060	0.820456	6.795563e-53	-8.615850e-47
Msa0085780	Msa1256840	0.829928	3.911788e-55	-8.615850e-47
Msa0085780	Msa1295150	0.808197	3.485544e-50	-8.615850e-47
Msa0085780	Msa1295170	0.805603	1.232738e-49	-8.615850e-47
Msa0085780	Msa1311400	0.813749	2.186481e-51	-8.615850e-47
Msa0085780	Msa1332250	0.820983	5.139732e-53	-8.615850e-47
Msa0085780	Msa1338190	0.851553	8.235065e-61	-8.615850e-47
Msa0085780	Msa1362210	0.805457	1.322868e-49	-8.615850e-47
Msa0085780	Msa1397100	0.804170	2.456953e-49	-8.615850e-47
Msa0085780	Msa1418770	0.804774	1.838071e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0085780	MtrunA17_Chr1g0201521	100.000	152	0	0	1	152	1	152	5.12e-112	314
Msa0085780	MtrunA17_Chr1g0201481	100.000	152	0	0	1	152	1	152	5.12e-112	314
Msa0085780	MtrunA17_Chr6g0467091	98.684	152	2	0	1	152	1	152	5.31e-111	311
Msa0085780	MtrunA17_Chr5g0409931	94.286	105	6	0	36	140	12	116	2.72e-70	207
Msa0085780	MtrunA17_Chr5g0409851	93.258	89	6	0	52	140	1	89	3.41e-58	176
Msa0085780	MtrunA17_Chr5g0409921	94.382	89	5	0	52	140	1	89	4.30e-58	175
Msa0085780	MtrunA17_Chr5g0409871	94.382	89	5	0	52	140	1	89	5.53e-58	175
Msa0085780	MtrunA17_Chr5g0409881	94.382	89	5	0	52	140	1	89	5.53e-58	175
Msa0085780	MtrunA17_Chr5g0409861	94.382	89	5	0	52	140	1	89	5.53e-58	175
Msa0085780	MtrunA17_Chr5g0409911	94.382	89	5	0	52	140	1	89	5.53e-58	175
Msa0085780	MtrunA17_Chr5g0409891	94.382	89	5	0	52	140	1	89	5.53e-58	175
Msa0085780	MtrunA17_Chr5g0409901	95.714	70	3	0	52	121	1	70	1.12e-43	138
Msa0085780	MtrunA17_Chr4g0006461	76.562	64	14	1	67	129	9	72	3.44e-28	99.8

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0085780	AT4G09800.1	92.763	152	11	1	152	1	152	1.97e-105	298
Msa0085780	AT1G34030.1	92.763	152	11	1	152	1	152	1.97e-105	298
Msa0085780	AT1G22780.1	92.763	152	11	1	152	1	152	1.97e-105	298

Find 51 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGTCGGCTAGTCTAAAA+TGG	0.337255	1_2:-66071413	Msa0085780:intron
CAGCTTCATGTCAAGTTGAT+TGG	0.350481	1_2:+66070856	None:intergenic
CATGAAGCTGAGGGATGATT+TGG	0.353151	1_2:-66070843	Msa0085780:CDS
TTTCCTATACAGACTTTGTA+TGG	0.367358	1_2:-66069836	Msa0085780:three_prime_UTR
ATCGTGGATTGAGGCACTAC+TGG	0.374036	1_2:-66070003	Msa0085780:CDS
TCCTCTGCGGCCAGTAGTCT+TGG	0.415117	1_2:+66069955	None:intergenic
CAACCATACAAAGTCTGTAT+AGG	0.422779	1_2:+66069833	None:intergenic
TACTGGGGCCTTCGTGTTCG+TGG	0.449083	1_2:-66069986	Msa0085780:CDS
ATGACCTCAATCAAGGGTAT+TGG	0.454252	1_2:-66071221	Msa0085780:CDS
TGCGAATCCTCGTCAATTCA+AGG	0.456574	1_2:-66070942	Msa0085780:CDS
TGATTGAGGTCATTGCGAAC+TGG	0.463060	1_2:+66071231	None:intergenic
GTTCGCAATGACCTCAATCA+AGG	0.484324	1_2:-66071228	Msa0085780:CDS
TATTATATGTTGAATGATGT+TGG	0.486351	1_2:-66069763	Msa0085780:three_prime_UTR
GTCAATTCAAGGTTCCAGAT+TGG	0.495981	1_2:-66070931	Msa0085780:CDS
CGCTAACATCTGCTGTAAGA+AGG	0.503592	1_2:-66071189	Msa0085780:CDS
CACAGCGACACACACACCCT+TGG	0.511428	1_2:-66071463	Msa0085780:five_prime_UTR
TGGAGAGACTCAAGAAGATC+CGG	0.515884	1_2:-66070823	Msa0085780:intron
TCGTGGATTGAGGCACTACT+GGG	0.516130	1_2:-66070002	Msa0085780:CDS
TTTCTATGTTAAGAACCAAC+GGG	0.519067	1_2:+66069732	None:intergenic
GAACAGAAAGAAGGATTACA+AGG	0.525479	1_2:-66070903	Msa0085780:CDS
CCTTCCAATACCCTTGATTG+AGG	0.543469	1_2:+66071217	None:intergenic
AGCGACACACACACCCTTGG+CGG	0.551294	1_2:-66071460	Msa0085780:five_prime_UTR
GGTCAGCATACCAAGACTAC+TGG	0.555192	1_2:-66069965	Msa0085780:CDS
ATGTTGGTGTTTATTCCCGT+TGG	0.559550	1_2:-66069747	Msa0085780:three_prime_UTR
TGAATTGAGTGCCGCGGAGT+TGG	0.561127	1_2:-66070984	Msa0085780:CDS
CGACCAAGGTTCACTGTGAA+CGG	0.561670	1_2:+66071428	None:intergenic
AACGGTGATGACTGCCGCCA+AGG	0.561805	1_2:+66071446	None:intergenic
AGAAAGAAGGATTACAAGGA+TGG	0.565673	1_2:-66070899	Msa0085780:CDS
CGTTCACAGTGAACCTTGGT+CGG	0.565860	1_2:-66071427	Msa0085780:five_prime_UTR
ATTTCTATGTTAAGAACCAA+CGG	0.579218	1_2:+66069731	None:intergenic
ACGGTGATGACTGCCGCCAA+GGG	0.587269	1_2:+66071447	None:intergenic
ATCAACTTGACATGAAGCTG+AGG	0.604543	1_2:-66070853	Msa0085780:CDS
ACCAAGACTACTGGCCGCAG+AGG	0.620084	1_2:-66069956	Msa0085780:CDS
TTCGCAATGACCTCAATCAA+GGG	0.622158	1_2:-66071227	Msa0085780:CDS
TCACCGTTCACAGTGAACCT+TGG	0.622608	1_2:-66071431	Msa0085780:five_prime_UTR
GGCCGCAGAGGAAAGACAGT+TGG	0.623790	1_2:-66069944	Msa0085780:CDS
GGCTGGTGAATTGAGTGCCG+CGG	0.628828	1_2:-66070990	Msa0085780:CDS
GTGTTGAACACAAATGTCGA+TGG	0.634706	1_2:-66071266	Msa0085780:CDS
TCAACTTGACATGAAGCTGA+GGG	0.637423	1_2:-66070852	Msa0085780:CDS
CAAGGGTGTGTGTGTCGCTG+TGG	0.637631	1_2:+66071464	None:intergenic
GCAGTAATCATCGTGGATTG+AGG	0.637806	1_2:-66070012	Msa0085780:intron
CTGTTATGCAGTAATCATCG+TGG	0.641883	1_2:-66070019	Msa0085780:intron
CCTCAATCAAGGGTATTGGA+AGG	0.644293	1_2:-66071217	Msa0085780:CDS
CCTCTTGTTCATGTCAACAT+CGG	0.651019	1_2:+66071166	None:intergenic
CCGATGTTGACATGAACAAG+AGG	0.658386	1_2:-66071166	Msa0085780:intron
TAATAACACAAGTTAATGTG+TGG	0.662054	1_2:-66069668	Msa0085780:three_prime_UTR
TCTGGAACCTTGAATTGACG+AGG	0.669518	1_2:+66070935	None:intergenic
CACCAACTGTCTTTCCTCTG+CGG	0.707516	1_2:+66069942	None:intergenic
CGTGGATTGAGGCACTACTG+GGG	0.709284	1_2:-66070001	Msa0085780:CDS
CATAATATTATCCAACTCCG+CGG	0.714027	1_2:+66070973	None:intergenic
TATGCTGACCACGAACACGA+AGG	0.739225	1_2:+66069978	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTGTTGTTAAAATTAA+TGG	-	chr1_2:66070043-66070062	Msa0085780:intron	10.0%
!!!	TTTTTGTTGTTAAAATTAAT+GGG	-	chr1_2:66070044-66070063	Msa0085780:intron	10.0%
!!	ATAAAATAATGAAATAAACA+AGG	+	chr1_2:66070368-66070387	None:intergenic	10.0%
!!	AGAAGTAAAAAATAAAATAA+TGG	+	chr1_2:66071004-66071023	None:intergenic	10.0%
!!!	ATTTTTGTTGTTAAAATTAA+TGG	-	chr1_2:66070043-66070062	Msa0085780:intron	10.0%
!!!	TTTTTGTTGTTAAAATTAAT+GGG	-	chr1_2:66070044-66070063	Msa0085780:intron	10.0%
!!	ATAAAATAATGAAATAAACA+AGG	+	chr1_2:66070368-66070387	None:intergenic	10.0%
!!	AGAAGTAAAAAATAAAATAA+TGG	+	chr1_2:66071004-66071023	None:intergenic	10.0%
!!!	TTTTGATATTATTGTTGAAA+TGG	-	chr1_2:66070106-66070125	Msa0085780:intron	15.0%
!!	TTTGATATTATTGTTGAAAT+GGG	-	chr1_2:66070107-66070126	Msa0085780:intron	15.0%
!!	GTTTAAATAAATATCAATCT+AGG	-	chr1_2:66070974-66070993	Msa0085780:CDS	15.0%
!!!	TTTTGATATTATTGTTGAAA+TGG	-	chr1_2:66070106-66070125	Msa0085780:intron	15.0%
!!	TTTGATATTATTGTTGAAAT+GGG	-	chr1_2:66070107-66070126	Msa0085780:intron	15.0%
!!	GTTTAAATAAATATCAATCT+AGG	-	chr1_2:66070974-66070993	Msa0085780:CDS	15.0%
!!!	AATGACTGATTTATAAAAGT+GGG	+	chr1_2:66070026-66070045	None:intergenic	20.0%
!!!	AAATGACTGATTTATAAAAG+TGG	+	chr1_2:66070027-66070046	None:intergenic	20.0%
!!!	TTTTGTTGTTGGATTTTTTT+AGG	-	chr1_2:66070134-66070153	Msa0085780:intron	20.0%
!!!	TTTGTTGTTGGATTTTTTTA+GGG	-	chr1_2:66070135-66070154	Msa0085780:intron	20.0%
!!	TATTAATTCTATCATCTTTC+TGG	+	chr1_2:66070427-66070446	None:intergenic	20.0%
!!	GTTTAAATTAACATAAGTTG+AGG	-	chr1_2:66070468-66070487	Msa0085780:intron	20.0%
!!!	ATAATTATTGCTTTGATAGT+TGG	-	chr1_2:66070444-66070463	Msa0085780:intron	20.0%
!!!	TTCTGTTTTCAGTAATATAA+TGG	-	chr1_2:66071028-66071047	Msa0085780:intron	20.0%
!!	TATTATATGTTGAATGATGT+TGG	-	chr1_2:66071383-66071402	Msa0085780:intron	20.0%
!!!	AATGACTGATTTATAAAAGT+GGG	+	chr1_2:66070026-66070045	None:intergenic	20.0%
!!!	AAATGACTGATTTATAAAAG+TGG	+	chr1_2:66070027-66070046	None:intergenic	20.0%
!!!	TTTTGTTGTTGGATTTTTTT+AGG	-	chr1_2:66070134-66070153	Msa0085780:intron	20.0%
!!!	TTTGTTGTTGGATTTTTTTA+GGG	-	chr1_2:66070135-66070154	Msa0085780:intron	20.0%
!!	TATTAATTCTATCATCTTTC+TGG	+	chr1_2:66070427-66070446	None:intergenic	20.0%
!!	GTTTAAATTAACATAAGTTG+AGG	-	chr1_2:66070468-66070487	Msa0085780:intron	20.0%
!!!	ATAATTATTGCTTTGATAGT+TGG	-	chr1_2:66070444-66070463	Msa0085780:intron	20.0%
!!!	TTCTGTTTTCAGTAATATAA+TGG	-	chr1_2:66071028-66071047	Msa0085780:intron	20.0%
!!	TATTATATGTTGAATGATGT+TGG	-	chr1_2:66071383-66071402	Msa0085780:intron	20.0%
!!!	AATTATTGCTTTGATAGTGT+AGG	-	chr1_2:66070446-66070465	Msa0085780:intron	25.0%
!!	TCAATTTCCAAACACTATTT+TGG	+	chr1_2:66070739-66070758	None:intergenic	25.0%
!	TTTCCCATAAGCTAAAATAT+AGG	-	chr1_2:66070799-66070818	Msa0085780:intron	25.0%
!!!	TTTGTTTTTCTCTTCCATAT+AGG	-	chr1_2:66070863-66070882	Msa0085780:CDS	25.0%
!	AAATAAATATCAATCTAGGC+AGG	-	chr1_2:66070978-66070997	Msa0085780:CDS	25.0%
!!!	GGTTACTAAATTTTTTGTTG+CGG	-	chr1_2:66071079-66071098	Msa0085780:intron	25.0%
!!!	TAAGCTGTTATGTTTTGATT+TGG	-	chr1_2:66071241-66071260	Msa0085780:CDS	25.0%
!!	GTGATGATTTCAATTTTGTT+TGG	-	chr1_2:66071345-66071364	Msa0085780:intron	25.0%
!	ATTTCTATGTTAAGAACCAA+CGG	+	chr1_2:66071418-66071437	None:intergenic	25.0%
!	TAATAACACAAGTTAATGTG+TGG	-	chr1_2:66071478-66071497	Msa0085780:five_prime_UTR	25.0%
!!!	AATTATTGCTTTGATAGTGT+AGG	-	chr1_2:66070446-66070465	Msa0085780:intron	25.0%
!!	TCAATTTCCAAACACTATTT+TGG	+	chr1_2:66070739-66070758	None:intergenic	25.0%
!	TTTCCCATAAGCTAAAATAT+AGG	-	chr1_2:66070799-66070818	Msa0085780:intron	25.0%
!!!	TTTGTTTTTCTCTTCCATAT+AGG	-	chr1_2:66070863-66070882	Msa0085780:CDS	25.0%
!	AAATAAATATCAATCTAGGC+AGG	-	chr1_2:66070978-66070997	Msa0085780:CDS	25.0%
!!!	GGTTACTAAATTTTTTGTTG+CGG	-	chr1_2:66071079-66071098	Msa0085780:intron	25.0%
!!!	TAAGCTGTTATGTTTTGATT+TGG	-	chr1_2:66071241-66071260	Msa0085780:CDS	25.0%
!!	GTGATGATTTCAATTTTGTT+TGG	-	chr1_2:66071345-66071364	Msa0085780:intron	25.0%
!	ATTTCTATGTTAAGAACCAA+CGG	+	chr1_2:66071418-66071437	None:intergenic	25.0%
	AGTGAAGAAAGAGATGAAAT+CGG	+	chr1_2:66069772-66069791	None:intergenic	30.0%
	ACGAAAAATAACAGAATCAG+TGG	+	chr1_2:66069809-66069828	None:intergenic	30.0%
!!!	AAATGGGTTGTTTTTGTTGT+TGG	-	chr1_2:66070123-66070142	Msa0085780:intron	30.0%
	TTTCTGTTCAAAAACCAATC+TGG	+	chr1_2:66070232-66070251	None:intergenic	30.0%
!!	TTGGTTTTTGAACAGAAAGA+AGG	-	chr1_2:66070234-66070253	Msa0085780:intron	30.0%
	TGTGTTCGAATAATAGAATG+AGG	-	chr1_2:66070569-66070588	Msa0085780:intron	30.0%
	ATAGAATGAGGATTCACTAT+TGG	-	chr1_2:66070581-66070600	Msa0085780:intron	30.0%
	ATTAAAGCTGGTTAGAAAAG+TGG	+	chr1_2:66070646-66070665	None:intergenic	30.0%
	TAACGCAATTCAATTAAAGC+TGG	+	chr1_2:66070658-66070677	None:intergenic	30.0%
	TTAGCTTCCAAAATAGTGTT+TGG	-	chr1_2:66070729-66070748	Msa0085780:intron	30.0%
	GTGTTTGGAAATTGATTATC+AGG	-	chr1_2:66070744-66070763	Msa0085780:intron	30.0%
!!!	CTGCCTATATTTTAGCTTAT+GGG	+	chr1_2:66070805-66070824	None:intergenic	30.0%
!!!	ACTGCCTATATTTTAGCTTA+TGG	+	chr1_2:66070806-66070825	None:intergenic	30.0%
	AAAATATAGGCAGTGAAAAC+TGG	-	chr1_2:66070812-66070831	Msa0085780:intron	30.0%
	AAATATAGGCAGTGAAAACT+GGG	-	chr1_2:66070813-66070832	Msa0085780:intron	30.0%
	ATCTTATATCCACTCCTATA+TGG	+	chr1_2:66070880-66070899	None:intergenic	30.0%
	GGATATAAGATGAAAACAGT+TGG	-	chr1_2:66070889-66070908	Msa0085780:CDS	30.0%
	TATAAGATGAAAACAGTTGG+TGG	-	chr1_2:66070892-66070911	Msa0085780:CDS	30.0%
!	TTGCATAAGCAAACTGTTTT+GGG	+	chr1_2:66070946-66070965	None:intergenic	30.0%
!	TTTGCATAAGCAAACTGTTT+TGG	+	chr1_2:66070947-66070966	None:intergenic	30.0%
!!	AGTAATATAATGGATGTGTG+TGG	-	chr1_2:66071038-66071057	Msa0085780:intron	30.0%
	ATGATTACTGCATAACAGAA+AGG	+	chr1_2:66071125-66071144	None:intergenic	30.0%
!	TTGGAGATTAGATGATTTTG+AGG	-	chr1_2:66071260-66071279	Msa0085780:CDS	30.0%
	TTTCCTATACAGACTTTGTA+TGG	-	chr1_2:66071310-66071329	Msa0085780:intron	30.0%
	TTTCTATGTTAAGAACCAAC+GGG	+	chr1_2:66071417-66071436	None:intergenic	30.0%
	AGTGAAGAAAGAGATGAAAT+CGG	+	chr1_2:66069772-66069791	None:intergenic	30.0%
	ACGAAAAATAACAGAATCAG+TGG	+	chr1_2:66069809-66069828	None:intergenic	30.0%
!!!	AAATGGGTTGTTTTTGTTGT+TGG	-	chr1_2:66070123-66070142	Msa0085780:intron	30.0%
	TTTCTGTTCAAAAACCAATC+TGG	+	chr1_2:66070232-66070251	None:intergenic	30.0%
!!	TTGGTTTTTGAACAGAAAGA+AGG	-	chr1_2:66070234-66070253	Msa0085780:intron	30.0%
	TGTGTTCGAATAATAGAATG+AGG	-	chr1_2:66070569-66070588	Msa0085780:intron	30.0%
	ATAGAATGAGGATTCACTAT+TGG	-	chr1_2:66070581-66070600	Msa0085780:intron	30.0%
	ATTAAAGCTGGTTAGAAAAG+TGG	+	chr1_2:66070646-66070665	None:intergenic	30.0%
	TAACGCAATTCAATTAAAGC+TGG	+	chr1_2:66070658-66070677	None:intergenic	30.0%
	TTAGCTTCCAAAATAGTGTT+TGG	-	chr1_2:66070729-66070748	Msa0085780:intron	30.0%
	GTGTTTGGAAATTGATTATC+AGG	-	chr1_2:66070744-66070763	Msa0085780:intron	30.0%
!!!	CTGCCTATATTTTAGCTTAT+GGG	+	chr1_2:66070805-66070824	None:intergenic	30.0%
!!!	ACTGCCTATATTTTAGCTTA+TGG	+	chr1_2:66070806-66070825	None:intergenic	30.0%
	AAAATATAGGCAGTGAAAAC+TGG	-	chr1_2:66070812-66070831	Msa0085780:intron	30.0%
	AAATATAGGCAGTGAAAACT+GGG	-	chr1_2:66070813-66070832	Msa0085780:intron	30.0%
	ATCTTATATCCACTCCTATA+TGG	+	chr1_2:66070880-66070899	None:intergenic	30.0%
	GGATATAAGATGAAAACAGT+TGG	-	chr1_2:66070889-66070908	Msa0085780:CDS	30.0%
	TATAAGATGAAAACAGTTGG+TGG	-	chr1_2:66070892-66070911	Msa0085780:CDS	30.0%
!	TTGCATAAGCAAACTGTTTT+GGG	+	chr1_2:66070946-66070965	None:intergenic	30.0%
!	TTTGCATAAGCAAACTGTTT+TGG	+	chr1_2:66070947-66070966	None:intergenic	30.0%
!!	AGTAATATAATGGATGTGTG+TGG	-	chr1_2:66071038-66071057	Msa0085780:intron	30.0%
	ATGATTACTGCATAACAGAA+AGG	+	chr1_2:66071125-66071144	None:intergenic	30.0%
!	TTGGAGATTAGATGATTTTG+AGG	-	chr1_2:66071260-66071279	Msa0085780:CDS	30.0%
	TTTCCTATACAGACTTTGTA+TGG	-	chr1_2:66071310-66071329	Msa0085780:intron	30.0%
	TTTCTATGTTAAGAACCAAC+GGG	+	chr1_2:66071417-66071436	None:intergenic	30.0%
	GTGAAGAAAGAGATGAAATC+GGG	+	chr1_2:66069771-66069790	None:intergenic	35.0%
	TCGTGATGTATTACAGTCTT+TGG	-	chr1_2:66069825-66069844	Msa0085780:three_prime_UTR	35.0%
!!!	TTGTTGGATTTTTTTAGGGC+TGG	-	chr1_2:66070139-66070158	Msa0085780:intron	35.0%
	CATAATATTATCCAACTCCG+CGG	+	chr1_2:66070176-66070195	None:intergenic	35.0%
	GAACAGAAAGAAGGATTACA+AGG	-	chr1_2:66070243-66070262	Msa0085780:intron	35.0%
	AGAAAGAAGGATTACAAGGA+TGG	-	chr1_2:66070247-66070266	Msa0085780:intron	35.0%
	AAAGTGGTGAATTATGACAG+CGG	+	chr1_2:66070630-66070649	None:intergenic	35.0%
!	TTTTCTCTTCCATATAGGAG+TGG	-	chr1_2:66070868-66070887	Msa0085780:CDS	35.0%
!	TGCATAAGCAAACTGTTTTG+GGG	+	chr1_2:66070945-66070964	None:intergenic	35.0%
	CAACCATACAAAGTCTGTAT+AGG	+	chr1_2:66071316-66071335	None:intergenic	35.0%
	GTGAAGAAAGAGATGAAATC+GGG	+	chr1_2:66069771-66069790	None:intergenic	35.0%
	TCGTGATGTATTACAGTCTT+TGG	-	chr1_2:66069825-66069844	Msa0085780:three_prime_UTR	35.0%
!!!	TTGTTGGATTTTTTTAGGGC+TGG	-	chr1_2:66070139-66070158	Msa0085780:intron	35.0%
	CATAATATTATCCAACTCCG+CGG	+	chr1_2:66070176-66070195	None:intergenic	35.0%
	GAACAGAAAGAAGGATTACA+AGG	-	chr1_2:66070243-66070262	Msa0085780:intron	35.0%
	AGAAAGAAGGATTACAAGGA+TGG	-	chr1_2:66070247-66070266	Msa0085780:intron	35.0%
	AAAGTGGTGAATTATGACAG+CGG	+	chr1_2:66070630-66070649	None:intergenic	35.0%
!	TTTTCTCTTCCATATAGGAG+TGG	-	chr1_2:66070868-66070887	Msa0085780:CDS	35.0%
!	TGCATAAGCAAACTGTTTTG+GGG	+	chr1_2:66070945-66070964	None:intergenic	35.0%
	CAACCATACAAAGTCTGTAT+AGG	+	chr1_2:66071316-66071335	None:intergenic	35.0%
	GAAAGAGATGAAATCGGGAT+CGG	+	chr1_2:66069766-66069785	None:intergenic	40.0%
	GTGTTGAACACAAATGTCGA+TGG	-	chr1_2:66069880-66069899	Msa0085780:three_prime_UTR	40.0%
	TTCGCAATGACCTCAATCAA+GGG	-	chr1_2:66069919-66069938	Msa0085780:exon	40.0%
!	ATGACCTCAATCAAGGGTAT+TGG	-	chr1_2:66069925-66069944	Msa0085780:CDS	40.0%
	CCTCTTGTTCATGTCAACAT+CGG	+	chr1_2:66069983-66070002	None:intergenic	40.0%
	GTCAATTCAAGGTTCCAGAT+TGG	-	chr1_2:66070215-66070234	Msa0085780:intron	40.0%
!!	CAGCTTCATGTCAAGTTGAT+TGG	+	chr1_2:66070293-66070312	None:intergenic	40.0%
	ATCAACTTGACATGAAGCTG+AGG	-	chr1_2:66070293-66070312	Msa0085780:intron	40.0%
	TCAACTTGACATGAAGCTGA+GGG	-	chr1_2:66070294-66070313	Msa0085780:intron	40.0%
	AAGTACTAGTAGCAACTGAC+CGG	+	chr1_2:66070345-66070364	None:intergenic	40.0%
!!	ATCATCTTTCTGGCTAACAC+AGG	+	chr1_2:66070417-66070436	None:intergenic	40.0%
	TTCGAACACATACACTGTCA+AGG	+	chr1_2:66070559-66070578	None:intergenic	40.0%
	CACACAATCAAAGCAATGGA+CGG	+	chr1_2:66070702-66070721	None:intergenic	40.0%
	TCCATTGCTTTGATTGTGTG+TGG	-	chr1_2:66070702-66070721	Msa0085780:intron	40.0%
	TCCACACACAATCAAAGCAA+TGG	+	chr1_2:66070706-66070725	None:intergenic	40.0%
	ACTGGGCTGAAGTTATTTGT+TGG	-	chr1_2:66070830-66070849	Msa0085780:CDS	40.0%
	ATGGATGTGTGTGGAGAAAT+TGG	-	chr1_2:66071047-66071066	Msa0085780:intron	40.0%
	TGGATGTGTGTGGAGAAATT+GGG	-	chr1_2:66071048-66071067	Msa0085780:intron	40.0%
	CTGTTATGCAGTAATCATCG+TGG	-	chr1_2:66071127-66071146	Msa0085780:intron	40.0%
!	ATGTTGGTGTTTATTCCCGT+TGG	-	chr1_2:66071399-66071418	Msa0085780:intron	40.0%
	GAAAGAGATGAAATCGGGAT+CGG	+	chr1_2:66069766-66069785	None:intergenic	40.0%
	GTGTTGAACACAAATGTCGA+TGG	-	chr1_2:66069880-66069899	Msa0085780:three_prime_UTR	40.0%
	TTCGCAATGACCTCAATCAA+GGG	-	chr1_2:66069919-66069938	Msa0085780:exon	40.0%
!	ATGACCTCAATCAAGGGTAT+TGG	-	chr1_2:66069925-66069944	Msa0085780:CDS	40.0%
	CCTCTTGTTCATGTCAACAT+CGG	+	chr1_2:66069983-66070002	None:intergenic	40.0%
	GTCAATTCAAGGTTCCAGAT+TGG	-	chr1_2:66070215-66070234	Msa0085780:intron	40.0%
!!	CAGCTTCATGTCAAGTTGAT+TGG	+	chr1_2:66070293-66070312	None:intergenic	40.0%
	ATCAACTTGACATGAAGCTG+AGG	-	chr1_2:66070293-66070312	Msa0085780:intron	40.0%
	TCAACTTGACATGAAGCTGA+GGG	-	chr1_2:66070294-66070313	Msa0085780:intron	40.0%
	AAGTACTAGTAGCAACTGAC+CGG	+	chr1_2:66070345-66070364	None:intergenic	40.0%
!!	ATCATCTTTCTGGCTAACAC+AGG	+	chr1_2:66070417-66070436	None:intergenic	40.0%
	TTCGAACACATACACTGTCA+AGG	+	chr1_2:66070559-66070578	None:intergenic	40.0%
	CACACAATCAAAGCAATGGA+CGG	+	chr1_2:66070702-66070721	None:intergenic	40.0%
	TCCATTGCTTTGATTGTGTG+TGG	-	chr1_2:66070702-66070721	Msa0085780:intron	40.0%
	TCCACACACAATCAAAGCAA+TGG	+	chr1_2:66070706-66070725	None:intergenic	40.0%
	ACTGGGCTGAAGTTATTTGT+TGG	-	chr1_2:66070830-66070849	Msa0085780:CDS	40.0%
	ATGGATGTGTGTGGAGAAAT+TGG	-	chr1_2:66071047-66071066	Msa0085780:intron	40.0%
	TGGATGTGTGTGGAGAAATT+GGG	-	chr1_2:66071048-66071067	Msa0085780:intron	40.0%
	CTGTTATGCAGTAATCATCG+TGG	-	chr1_2:66071127-66071146	Msa0085780:intron	40.0%
!	ATGTTGGTGTTTATTCCCGT+TGG	-	chr1_2:66071399-66071418	Msa0085780:intron	40.0%
!!	CATTTTAGACTAGCCGACCA+AGG	+	chr1_2:66069735-66069754	None:intergenic	45.0%
!!	CTTGGTCGGCTAGTCTAAAA+TGG	-	chr1_2:66069733-66069752	Msa0085780:three_prime_UTR	45.0%
	TGATTGAGGTCATTGCGAAC+TGG	+	chr1_2:66069918-66069937	None:intergenic	45.0%
	GTTCGCAATGACCTCAATCA+AGG	-	chr1_2:66069918-66069937	Msa0085780:exon	45.0%
	CCTTCCAATACCCTTGATTG+AGG	+	chr1_2:66069932-66069951	None:intergenic	45.0%
!!	CCTCAATCAAGGGTATTGGA+AGG	-	chr1_2:66069929-66069948	Msa0085780:CDS	45.0%
	CGCTAACATCTGCTGTAAGA+AGG	-	chr1_2:66069957-66069976	Msa0085780:CDS	45.0%
	CCGATGTTGACATGAACAAG+AGG	-	chr1_2:66069980-66069999	Msa0085780:CDS	45.0%
	TGCGAATCCTCGTCAATTCA+AGG	-	chr1_2:66070204-66070223	Msa0085780:intron	45.0%
!	TCTGGAACCTTGAATTGACG+AGG	+	chr1_2:66070214-66070233	None:intergenic	45.0%
	CATGAAGCTGAGGGATGATT+TGG	-	chr1_2:66070303-66070322	Msa0085780:intron	45.0%
	TGGAGAGACTCAAGAAGATC+CGG	-	chr1_2:66070323-66070342	Msa0085780:intron	45.0%
	ATTGCGTTAGACACCAGAAG+AGG	-	chr1_2:66070669-66070688	Msa0085780:intron	45.0%
	TTGCGTTAGACACCAGAAGA+GGG	-	chr1_2:66070670-66070689	Msa0085780:intron	45.0%
	TGTGTGGAGAAATTGGGCAT+TGG	-	chr1_2:66071054-66071073	Msa0085780:intron	45.0%
!	GCAGTAATCATCGTGGATTG+AGG	-	chr1_2:66071134-66071153	Msa0085780:intron	45.0%
!!	CATTTTAGACTAGCCGACCA+AGG	+	chr1_2:66069735-66069754	None:intergenic	45.0%
!!	CTTGGTCGGCTAGTCTAAAA+TGG	-	chr1_2:66069733-66069752	Msa0085780:three_prime_UTR	45.0%
	TGATTGAGGTCATTGCGAAC+TGG	+	chr1_2:66069918-66069937	None:intergenic	45.0%
	GTTCGCAATGACCTCAATCA+AGG	-	chr1_2:66069918-66069937	Msa0085780:exon	45.0%
	CCTTCCAATACCCTTGATTG+AGG	+	chr1_2:66069932-66069951	None:intergenic	45.0%
!!	CCTCAATCAAGGGTATTGGA+AGG	-	chr1_2:66069929-66069948	Msa0085780:CDS	45.0%
	CGCTAACATCTGCTGTAAGA+AGG	-	chr1_2:66069957-66069976	Msa0085780:CDS	45.0%
	CCGATGTTGACATGAACAAG+AGG	-	chr1_2:66069980-66069999	Msa0085780:CDS	45.0%
	TGCGAATCCTCGTCAATTCA+AGG	-	chr1_2:66070204-66070223	Msa0085780:intron	45.0%
!	TCTGGAACCTTGAATTGACG+AGG	+	chr1_2:66070214-66070233	None:intergenic	45.0%
	CATGAAGCTGAGGGATGATT+TGG	-	chr1_2:66070303-66070322	Msa0085780:intron	45.0%
	TGGAGAGACTCAAGAAGATC+CGG	-	chr1_2:66070323-66070342	Msa0085780:intron	45.0%
	ATTGCGTTAGACACCAGAAG+AGG	-	chr1_2:66070669-66070688	Msa0085780:intron	45.0%
	TTGCGTTAGACACCAGAAGA+GGG	-	chr1_2:66070670-66070689	Msa0085780:intron	45.0%
	TGTGTGGAGAAATTGGGCAT+TGG	-	chr1_2:66071054-66071073	Msa0085780:intron	45.0%
!	GCAGTAATCATCGTGGATTG+AGG	-	chr1_2:66071134-66071153	Msa0085780:intron	45.0%
	TCACCGTTCACAGTGAACCT+TGG	-	chr1_2:66069715-66069734	Msa0085780:three_prime_UTR	50.0%
	CGACCAAGGTTCACTGTGAA+CGG	+	chr1_2:66069721-66069740	None:intergenic	50.0%
	CGTTCACAGTGAACCTTGGT+CGG	-	chr1_2:66069719-66069738	Msa0085780:three_prime_UTR	50.0%
	GTGGTGAATTATGACAGCGG+AGG	+	chr1_2:66070627-66070646	None:intergenic	50.0%
	GGACGGTATTATCCCTCTTC+TGG	+	chr1_2:66070685-66070704	None:intergenic	50.0%
!!	TGGAGAAATTGGGCATTGGC+TGG	-	chr1_2:66071058-66071077	Msa0085780:intron	50.0%
!	ATCGTGGATTGAGGCACTAC+TGG	-	chr1_2:66071143-66071162	Msa0085780:intron	50.0%
!	TCGTGGATTGAGGCACTACT+GGG	-	chr1_2:66071144-66071163	Msa0085780:intron	50.0%
	TATGCTGACCACGAACACGA+AGG	+	chr1_2:66071171-66071190	None:intergenic	50.0%
	GGTCAGCATACCAAGACTAC+TGG	-	chr1_2:66071181-66071200	Msa0085780:CDS	50.0%
	CACCAACTGTCTTTCCTCTG+CGG	+	chr1_2:66071207-66071226	None:intergenic	50.0%
	TCACCGTTCACAGTGAACCT+TGG	-	chr1_2:66069715-66069734	Msa0085780:three_prime_UTR	50.0%
	CGACCAAGGTTCACTGTGAA+CGG	+	chr1_2:66069721-66069740	None:intergenic	50.0%
	CGTTCACAGTGAACCTTGGT+CGG	-	chr1_2:66069719-66069738	Msa0085780:three_prime_UTR	50.0%
	GTGGTGAATTATGACAGCGG+AGG	+	chr1_2:66070627-66070646	None:intergenic	50.0%
	GGACGGTATTATCCCTCTTC+TGG	+	chr1_2:66070685-66070704	None:intergenic	50.0%
!!	TGGAGAAATTGGGCATTGGC+TGG	-	chr1_2:66071058-66071077	Msa0085780:intron	50.0%
!	ATCGTGGATTGAGGCACTAC+TGG	-	chr1_2:66071143-66071162	Msa0085780:intron	50.0%
!	TCGTGGATTGAGGCACTACT+GGG	-	chr1_2:66071144-66071163	Msa0085780:intron	50.0%
	TATGCTGACCACGAACACGA+AGG	+	chr1_2:66071171-66071190	None:intergenic	50.0%
	GGTCAGCATACCAAGACTAC+TGG	-	chr1_2:66071181-66071200	Msa0085780:CDS	50.0%
	CACCAACTGTCTTTCCTCTG+CGG	+	chr1_2:66071207-66071226	None:intergenic	50.0%
!	TGAATTGAGTGCCGCGGAGT+TGG	-	chr1_2:66070162-66070181	Msa0085780:intron	55.0%
!	CGTGGATTGAGGCACTACTG+GGG	-	chr1_2:66071145-66071164	Msa0085780:intron	55.0%
!	TGAATTGAGTGCCGCGGAGT+TGG	-	chr1_2:66070162-66070181	Msa0085780:intron	55.0%
!	CGTGGATTGAGGCACTACTG+GGG	-	chr1_2:66071145-66071164	Msa0085780:intron	55.0%
!	CAAGGGTGTGTGTGTCGCTG+TGG	+	chr1_2:66069685-66069704	None:intergenic	60.0%
	CACAGCGACACACACACCCT+TGG	-	chr1_2:66069683-66069702	Msa0085780:three_prime_UTR	60.0%
	AGCGACACACACACCCTTGG+CGG	-	chr1_2:66069686-66069705	Msa0085780:three_prime_UTR	60.0%
	ACGGTGATGACTGCCGCCAA+GGG	+	chr1_2:66069702-66069721	None:intergenic	60.0%
	AACGGTGATGACTGCCGCCA+AGG	+	chr1_2:66069703-66069722	None:intergenic	60.0%
!	GGCTGGTGAATTGAGTGCCG+CGG	-	chr1_2:66070156-66070175	Msa0085780:intron	60.0%
	TACTGGGGCCTTCGTGTTCG+TGG	-	chr1_2:66071160-66071179	Msa0085780:intron	60.0%
	ACCAAGACTACTGGCCGCAG+AGG	-	chr1_2:66071190-66071209	Msa0085780:CDS	60.0%
	TCCTCTGCGGCCAGTAGTCT+TGG	+	chr1_2:66071194-66071213	None:intergenic	60.0%
	GGCCGCAGAGGAAAGACAGT+TGG	-	chr1_2:66071202-66071221	Msa0085780:CDS	60.0%
!	CAAGGGTGTGTGTGTCGCTG+TGG	+	chr1_2:66069685-66069704	None:intergenic	60.0%
	CACAGCGACACACACACCCT+TGG	-	chr1_2:66069683-66069702	Msa0085780:three_prime_UTR	60.0%
	AGCGACACACACACCCTTGG+CGG	-	chr1_2:66069686-66069705	Msa0085780:three_prime_UTR	60.0%
	ACGGTGATGACTGCCGCCAA+GGG	+	chr1_2:66069702-66069721	None:intergenic	60.0%
	AACGGTGATGACTGCCGCCA+AGG	+	chr1_2:66069703-66069722	None:intergenic	60.0%
!	GGCTGGTGAATTGAGTGCCG+CGG	-	chr1_2:66070156-66070175	Msa0085780:intron	60.0%
	TACTGGGGCCTTCGTGTTCG+TGG	-	chr1_2:66071160-66071179	Msa0085780:intron	60.0%
	ACCAAGACTACTGGCCGCAG+AGG	-	chr1_2:66071190-66071209	Msa0085780:CDS	60.0%
	TCCTCTGCGGCCAGTAGTCT+TGG	+	chr1_2:66071194-66071213	None:intergenic	60.0%
	GGCCGCAGAGGAAAGACAGT+TGG	-	chr1_2:66071202-66071221	Msa0085780:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	66069668	66071500	66069668	ID=Msa0085780;Name=Msa0085780
chr1_2	mRNA	66069668	66071500	66069668	ID=Msa0085780-mRNA-1;Parent=Msa0085780;Name=Msa0085780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=84\|1\|1\|1\|1\|1\|4\|257\|152
chr1_2	exon	66069668	66070030	66069668	ID=Msa0085780-mRNA-1:exon:22333;Parent=Msa0085780-mRNA-1
chr1_2	exon	66070824	66071012	66070824	ID=Msa0085780-mRNA-1:exon:22332;Parent=Msa0085780-mRNA-1
chr1_2	exon	66071167	66071327	66071167	ID=Msa0085780-mRNA-1:exon:22331;Parent=Msa0085780-mRNA-1
chr1_2	exon	66071414	66071500	66071414	ID=Msa0085780-mRNA-1:exon:22330;Parent=Msa0085780-mRNA-1
chr1_2	five_prime_UTR	66071417	66071500	66071417	ID=Msa0085780-mRNA-1:five_prime_utr;Parent=Msa0085780-mRNA-1
chr1_2	CDS	66071414	66071416	66071414	ID=Msa0085780-mRNA-1:cds;Parent=Msa0085780-mRNA-1
chr1_2	CDS	66071167	66071327	66071167	ID=Msa0085780-mRNA-1:cds;Parent=Msa0085780-mRNA-1
chr1_2	CDS	66070824	66071012	66070824	ID=Msa0085780-mRNA-1:cds;Parent=Msa0085780-mRNA-1
chr1_2	CDS	66069925	66070030	66069925	ID=Msa0085780-mRNA-1:cds;Parent=Msa0085780-mRNA-1
chr1_2	three_prime_UTR	66069668	66069924	66069668	ID=Msa0085780-mRNA-1:three_prime_utr;Parent=Msa0085780-mRNA-1

Gene Sequence

>Msa0085780

ATGTCTTTGGTTGCGAACGAAGAATTTCAGCACATTTTGCGTGTGTTGAACACAAATGTCGATGGAAAGCAGAAGATCCAGTTCGCAATGACCTCAATCAAGGGTATTGGAAGGAGATTCGCTAACATCTGCTGTAAGAAGGCCGATGTTGACATGAACAAGAGGGCTGGTGAATTGAGTGCCGCGGAGTTGGATAATATTATGACAGTTGTTGCGAATCCTCGTCAATTCAAGGTTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATTCTCTCAAGTTGTATCCAATCAACTTGACATGAAGCTGAGGGATGATTTGGAGAGACTCAAGAAGATCCGTAATCATCGTGGATTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGCCGCAGAGGAAAGACAGTTGGTGTGTCAAAGAAGCGTTAA

Protein sequence

>Msa0085780

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*