AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397100 MtrunA17_Chr7g0266661 100.000 124 0 0 1 124 5 128 3.08e-89 254
Msa1397100 MtrunA17_Chr1g0178381 100.000 124 0 0 1 124 5 128 3.08e-89 254
Msa1397100 MtrunA17_Chr3g0127481 100.000 124 0 0 1 124 5 128 3.08e-89 254
Msa1397100 MtrunA17_Chr6g0475951 98.630 73 1 0 1 73 5 77 1.68e-47 147
Msa1397100 MtrunA17_Chr6g0475961 98.630 73 1 0 1 73 8 80 2.23e-46 148
Msa1397100 MtrunA17_Chr6g0475961 98.630 73 1 0 1 73 84 156 2.23e-46 148
Msa1397100 MtrunA17_Chr6g0475961 100.000 33 0 0 1 33 160 192 1.30e-14 67.0
Msa1397100 MtrunA17_Chr4g0037241 100.000 72 0 0 1 72 5 76 2.61e-46 146
Msa1397100 MtrunA17_Chr4g0037241 62.500 72 27 0 1 72 81 152 1.88e-26 96.3
Msa1397100 MtrunA17_Chr5g0444101 100.000 72 0 0 1 72 5 76 2.61e-46 146
Msa1397100 MtrunA17_Chr5g0444101 62.500 72 27 0 1 72 81 152 1.88e-26 96.3
Msa1397100 MtrunA17_Chr8g0380181 100.000 72 0 0 1 72 5 76 3.60e-46 146
Msa1397100 MtrunA17_Chr5g0413361 100.000 72 0 0 1 72 5 76 3.84e-46 146
Msa1397100 MtrunA17_Chr7g0274921 98.630 73 1 0 1 73 7 79 9.38e-46 147
Msa1397100 MtrunA17_Chr7g0274921 98.630 73 1 0 1 73 83 155 9.38e-46 147
Msa1397100 MtrunA17_Chr7g0274921 98.630 73 1 0 1 73 159 231 1.22e-45 147
Msa1397100 MtrunA17_Chr1g0181441 98.630 73 1 0 1 73 5 77 1.39e-45 147
Msa1397100 MtrunA17_Chr1g0181441 98.630 73 1 0 1 73 81 153 1.39e-45 147
Msa1397100 MtrunA17_Chr1g0181441 100.000 72 0 0 1 72 157 228 2.19e-45 147
Msa1397100 MtrunA17_Chr4g0041751 97.260 73 2 0 1 73 81 153 2.66e-45 146
Msa1397100 MtrunA17_Chr4g0041751 97.260 73 2 0 1 73 5 77 4.63e-45 146
Msa1397100 MtrunA17_Chr4g0041751 68.056 72 23 0 1 72 157 228 9.16e-27 99.4
Msa1397100 MtrunA17_Chr8g0377821 98.630 73 1 0 1 73 13 85 5.65e-44 147
Msa1397100 MtrunA17_Chr8g0377821 98.630 73 1 0 1 73 89 161 5.65e-44 147
Msa1397100 MtrunA17_Chr8g0377821 98.630 73 1 0 1 73 165 237 5.65e-44 147
Msa1397100 MtrunA17_Chr8g0377821 98.630 73 1 0 1 73 241 313 5.65e-44 147
Msa1397100 MtrunA17_Chr8g0377821 100.000 72 0 0 1 72 317 388 8.92e-44 147
Msa1397100 MtrunA17_Chr4g0046801 98.630 73 1 0 1 73 8 80 1.26e-43 148
Msa1397100 MtrunA17_Chr4g0046801 98.630 73 1 0 1 73 84 156 1.26e-43 148
Msa1397100 MtrunA17_Chr4g0046801 98.630 73 1 0 1 73 160 232 1.26e-43 148
Msa1397100 MtrunA17_Chr4g0046801 98.630 73 1 0 1 73 236 308 1.26e-43 148
Msa1397100 MtrunA17_Chr4g0046801 98.630 73 1 0 1 73 312 384 1.26e-43 148
Msa1397100 MtrunA17_Chr4g0046801 98.630 73 1 0 1 73 388 460 1.64e-43 147
Msa1397100 MtrunA17_Chr4g0041641 98.630 73 1 0 1 73 9 81 1.46e-43 147
Msa1397100 MtrunA17_Chr4g0041641 98.630 73 1 0 1 73 85 157 1.46e-43 147
Msa1397100 MtrunA17_Chr4g0041641 98.630 73 1 0 1 73 161 233 1.46e-43 147
Msa1397100 MtrunA17_Chr4g0041641 98.630 73 1 0 1 73 237 309 1.46e-43 147
Msa1397100 MtrunA17_Chr4g0041641 98.630 73 1 0 1 73 313 385 1.46e-43 147
Msa1397100 MtrunA17_Chr4g0041641 98.630 73 1 0 1 73 389 461 1.87e-43 147
Msa1397100 MtrunA17_Chr4g0048591 98.630 73 1 0 1 73 8 80 3.76e-43 148
Msa1397100 MtrunA17_Chr4g0048591 98.630 73 1 0 1 73 84 156 3.76e-43 148
Msa1397100 MtrunA17_Chr4g0048591 98.630 73 1 0 1 73 160 232 3.76e-43 148
Msa1397100 MtrunA17_Chr4g0048591 98.630 73 1 0 1 73 236 308 3.76e-43 148
Msa1397100 MtrunA17_Chr4g0048591 98.630 73 1 0 1 73 388 460 3.76e-43 148
Msa1397100 MtrunA17_Chr4g0048591 98.630 73 1 0 1 73 464 536 4.86e-43 147
Msa1397100 MtrunA17_Chr4g0048591 95.890 73 3 0 1 73 312 384 1.39e-41 144
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 8 80 4.00e-43 148
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 84 156 4.00e-43 148
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 160 232 4.00e-43 148
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 236 308 4.00e-43 148
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 312 384 4.00e-43 148
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 388 460 4.00e-43 148
Msa1397100 MtrunA17_Chr8g0342711 98.630 73 1 0 1 73 464 536 5.18e-43 147
Msa1397100 MtrunA17_Chr4g0041701 98.630 73 1 0 1 73 5 77 4.69e-43 147
Msa1397100 MtrunA17_Chr4g0041701 98.630 73 1 0 1 73 81 153 4.69e-43 147
Msa1397100 MtrunA17_Chr4g0041701 98.630 73 1 0 1 73 157 229 4.69e-43 147
Msa1397100 MtrunA17_Chr4g0041701 98.630 73 1 0 1 73 233 305 4.69e-43 147
Msa1397100 MtrunA17_Chr4g0041701 98.630 73 1 0 1 73 309 381 4.69e-43 147
Msa1397100 MtrunA17_Chr4g0041701 98.630 73 1 0 1 73 385 457 4.69e-43 147
Msa1397100 MtrunA17_Chr4g0041701 100.000 72 0 0 1 72 461 532 7.24e-43 147
Msa1397100 MtrunA17_Chr4g0046831 98.630 73 1 0 1 73 84 156 7.72e-43 147
Msa1397100 MtrunA17_Chr4g0046831 98.630 73 1 0 1 73 160 232 7.72e-43 147
Msa1397100 MtrunA17_Chr4g0046831 98.630 73 1 0 1 73 236 308 7.72e-43 147
Msa1397100 MtrunA17_Chr4g0046831 98.630 73 1 0 1 73 372 444 7.72e-43 147
Msa1397100 MtrunA17_Chr4g0046831 98.630 73 1 0 1 73 448 520 7.72e-43 147
Msa1397100 MtrunA17_Chr4g0046831 98.630 73 1 0 1 73 524 596 9.86e-43 147
Msa1397100 MtrunA17_Chr4g0046831 97.260 73 2 0 1 73 8 80 2.01e-41 144
Msa1397100 MtrunA17_Chr4g0046831 76.712 73 1 1 1 73 312 368 3.00e-27 104
Msa1397100 MtrunA17_Chr8g0374171 96.774 62 2 0 12 73 89 150 1.94e-36 122
Msa1397100 MtrunA17_Chr8g0374171 91.429 35 3 0 39 73 40 74 2.50e-15 68.2
Msa1397100 MtrunA17_Chr1g0169371 70.833 72 21 0 1 72 219 290 7.62e-26 98.2
Msa1397100 MtrunA17_Chr5g0433721 68.493 73 22 1 1 72 198 270 5.69e-25 95.5
Msa1397100 MtrunA17_Chr5g0433631 68.116 69 22 0 1 69 270 338 1.04e-23 93.2
Msa1397100 MtrunA17_Chr5g0424981 59.155 71 29 0 1 71 6 76 5.74e-23 85.1
Msa1397100 MtrunA17_Chr5g0428191 68.056 72 23 0 1 72 245 316 8.18e-23 90.5
Msa1397100 MtrunA17_Chr8g0374161 100.000 40 0 0 1 40 13 52 1.54e-21 80.9
Msa1397100 MtrunA17_Chr1g0169401 60.000 70 28 0 3 72 2 71 2.95e-21 80.9
Msa1397100 MtrunA17_Chr5g0433521 64.706 68 24 0 4 71 247 314 3.92e-21 86.3
Msa1397100 MtrunA17_Chr2g0298951 60.563 71 28 0 1 71 240 310 7.64e-21 85.1
Msa1397100 MtrunA17_Chr5g0433411 67.188 64 21 0 6 69 276 339 1.47e-20 84.7
Msa1397100 MtrunA17_Chr5g0433681 60.606 66 26 0 6 71 11 76 2.27e-20 78.6
Msa1397100 MtrunA17_Chr7g0259431 59.155 71 29 0 1 71 227 297 2.81e-20 83.6
Msa1397100 MtrunA17_Chr5g0433661 63.380 71 26 0 1 71 282 352 1.14e-19 82.4
Msa1397100 MtrunA17_Chr2g0298941 57.746 71 30 0 1 71 181 251 1.32e-18 78.6
Msa1397100 MtrunA17_Chr4g0003111 56.061 66 29 0 6 71 13 78 2.47e-18 73.6
Msa1397100 MtrunA17_Chr5g0433531 60.000 65 26 0 6 70 254 318 1.44e-17 76.6
Msa1397100 MtrunA17_Chr7g0223111 59.722 72 28 1 1 71 271 342 3.12e-16 73.2
Msa1397100 MtrunA17_Chr5g0433701 56.250 64 27 1 1 63 5 68 1.10e-15 67.0
Msa1397100 MtrunA17_Chr5g0433711 58.333 60 25 0 11 70 4 63 3.92e-15 65.1
Msa1397100 MtrunA17_Chr5g0424971 50.704 71 35 0 1 71 256 326 5.89e-15 69.3
Msa1397100 MtrunA17_Chr5g0433391 49.231 65 33 0 7 71 19 83 1.61e-13 61.2
Msa1397100 MtrunA17_Chr5g0433381 50.725 69 33 1 4 71 17 85 8.54e-13 59.7
Msa1397100 MtrunA17_Chr4g0041621 76.471 34 8 0 40 73 11 44 4.41e-12 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397100 AT2G36170.1 98.387 124 2 0 1 124 5 128 1.39e-87 250
Msa1397100 AT3G52590.1 98.387 124 2 0 1 124 5 128 1.39e-87 250
Msa1397100 AT4G05320.7 98.630 73 1 0 1 73 5 77 1.57e-46 147
Msa1397100 AT4G05320.7 98.630 73 1 0 1 73 81 153 1.99e-46 147
Msa1397100 AT4G05050.4 98.630 73 1 0 1 73 5 77 1.57e-46 147
Msa1397100 AT4G05050.4 98.630 73 1 0 1 73 81 153 1.99e-46 147
Msa1397100 AT2G35635.1 100.000 72 0 0 1 72 5 76 3.59e-46 147
Msa1397100 AT2G35635.1 60.811 74 29 0 1 74 81 154 2.87e-26 96.3
Msa1397100 AT2G47110.2 100.000 72 0 0 1 72 5 76 4.73e-46 146
Msa1397100 AT2G47110.1 100.000 72 0 0 1 72 5 76 4.73e-46 146
Msa1397100 AT3G62250.1 100.000 72 0 0 1 72 5 76 4.89e-46 146
Msa1397100 AT1G31340.1 100.000 72 0 0 1 72 5 76 5.24e-46 146
Msa1397100 AT1G31340.1 63.014 73 27 0 1 73 81 153 6.21e-27 98.2
Msa1397100 AT1G23410.1 100.000 72 0 0 1 72 5 76 5.35e-46 146
Msa1397100 AT4G02890.2 98.630 73 1 0 1 73 5 77 1.35e-45 147
Msa1397100 AT4G02890.2 98.630 73 1 0 1 73 81 153 1.35e-45 147
Msa1397100 AT4G02890.2 98.630 73 1 0 1 73 157 229 1.73e-45 147
Msa1397100 AT4G02890.1 98.630 73 1 0 1 73 5 77 1.35e-45 147
Msa1397100 AT4G02890.1 98.630 73 1 0 1 73 81 153 1.35e-45 147
Msa1397100 AT4G02890.1 98.630 73 1 0 1 73 157 229 1.73e-45 147
Msa1397100 AT4G05050.2 98.630 73 1 0 1 73 5 77 1.35e-45 147
Msa1397100 AT4G05050.2 98.630 73 1 0 1 73 81 153 1.35e-45 147
Msa1397100 AT4G05050.2 98.630 73 1 0 1 73 157 229 1.73e-45 147
Msa1397100 AT4G05050.1 98.630 73 1 0 1 73 5 77 1.35e-45 147
Msa1397100 AT4G05050.1 98.630 73 1 0 1 73 81 153 1.35e-45 147
Msa1397100 AT4G05050.1 98.630 73 1 0 1 73 157 229 1.73e-45 147
Msa1397100 AT4G05050.3 98.630 73 1 0 1 73 5 77 1.35e-45 147
Msa1397100 AT4G05050.3 98.630 73 1 0 1 73 81 153 1.35e-45 147
Msa1397100 AT4G05050.3 98.630 73 1 0 1 73 157 229 1.73e-45 147
Msa1397100 AT1G55060.1 97.260 73 2 0 1 73 81 153 4.07e-45 146
Msa1397100 AT1G55060.1 97.222 72 2 0 1 72 157 228 5.58e-43 141
Msa1397100 AT1G55060.1 84.932 73 11 0 1 73 5 77 4.98e-39 131
Msa1397100 AT5G03240.3 98.630 73 1 0 1 73 5 77 9.42e-45 147
Msa1397100 AT5G03240.3 98.630 73 1 0 1 73 81 153 9.42e-45 147
Msa1397100 AT5G03240.3 98.630 73 1 0 1 73 157 229 9.42e-45 147
Msa1397100 AT5G03240.3 100.000 72 0 0 1 72 233 304 1.48e-44 147
Msa1397100 AT5G03240.2 98.630 73 1 0 1 73 5 77 9.42e-45 147
Msa1397100 AT5G03240.2 98.630 73 1 0 1 73 81 153 9.42e-45 147
Msa1397100 AT5G03240.2 98.630 73 1 0 1 73 157 229 9.42e-45 147
Msa1397100 AT5G03240.2 100.000 72 0 0 1 72 233 304 1.48e-44 147
Msa1397100 AT5G03240.1 98.630 73 1 0 1 73 5 77 9.42e-45 147
Msa1397100 AT5G03240.1 98.630 73 1 0 1 73 81 153 9.42e-45 147
Msa1397100 AT5G03240.1 98.630 73 1 0 1 73 157 229 9.42e-45 147
Msa1397100 AT5G03240.1 100.000 72 0 0 1 72 233 304 1.48e-44 147
Msa1397100 AT5G20620.2 98.630 73 1 0 1 73 5 77 9.42e-45 147
Msa1397100 AT5G20620.2 98.630 73 1 0 1 73 81 153 9.42e-45 147
Msa1397100 AT5G20620.2 98.630 73 1 0 1 73 157 229 9.42e-45 147
Msa1397100 AT5G20620.2 100.000 72 0 0 1 72 233 304 1.48e-44 147
Msa1397100 AT4G05320.5 98.630 73 1 0 1 73 5 77 1.02e-44 147
Msa1397100 AT4G05320.5 98.630 73 1 0 1 73 81 153 1.02e-44 147
Msa1397100 AT4G05320.5 98.630 73 1 0 1 73 157 229 1.02e-44 147
Msa1397100 AT4G05320.5 98.630 73 1 0 1 73 233 305 1.33e-44 147
Msa1397100 AT4G05320.8 98.630 73 1 0 1 73 5 77 1.02e-44 147
Msa1397100 AT4G05320.8 98.630 73 1 0 1 73 81 153 1.02e-44 147
Msa1397100 AT4G05320.8 98.630 73 1 0 1 73 157 229 1.02e-44 147
Msa1397100 AT4G05320.8 98.630 73 1 0 1 73 233 305 1.33e-44 147
Msa1397100 AT4G02890.3 98.630 73 1 0 1 73 5 77 1.02e-44 147
Msa1397100 AT4G02890.3 98.630 73 1 0 1 73 81 153 1.02e-44 147
Msa1397100 AT4G02890.3 98.630 73 1 0 1 73 157 229 1.02e-44 147
Msa1397100 AT4G02890.3 98.630 73 1 0 1 73 233 305 1.33e-44 147
Msa1397100 AT4G02890.4 98.630 73 1 0 1 73 5 77 1.02e-44 147
Msa1397100 AT4G02890.4 98.630 73 1 0 1 73 81 153 1.02e-44 147
Msa1397100 AT4G02890.4 98.630 73 1 0 1 73 157 229 1.02e-44 147
Msa1397100 AT4G02890.4 98.630 73 1 0 1 73 233 305 1.33e-44 147
Msa1397100 AT1G65350.1 98.630 73 1 0 1 73 5 77 1.28e-44 147
Msa1397100 AT1G65350.1 97.260 73 2 0 1 73 156 228 1.87e-43 144
Msa1397100 AT1G65350.1 97.260 73 1 1 1 73 81 152 1.41e-41 140
Msa1397100 AT1G65350.1 79.070 86 4 1 1 72 232 317 1.56e-35 124
Msa1397100 AT5G20620.1 98.630 73 1 0 1 73 5 77 4.43e-44 148
Msa1397100 AT5G20620.1 98.630 73 1 0 1 73 81 153 4.43e-44 148
Msa1397100 AT5G20620.1 98.630 73 1 0 1 73 157 229 4.43e-44 148
Msa1397100 AT5G20620.1 98.630 73 1 0 1 73 233 305 4.43e-44 148
Msa1397100 AT5G20620.1 100.000 72 0 0 1 72 309 380 6.92e-44 147
Msa1397100 AT4G05320.1 98.630 73 1 0 1 73 5 77 5.48e-44 147
Msa1397100 AT4G05320.1 98.630 73 1 0 1 73 81 153 5.48e-44 147
Msa1397100 AT4G05320.1 98.630 73 1 0 1 73 157 229 5.48e-44 147
Msa1397100 AT4G05320.1 98.630 73 1 0 1 73 233 305 5.48e-44 147
Msa1397100 AT4G05320.1 98.630 73 1 0 1 73 309 381 7.08e-44 147
Msa1397100 AT4G05320.6 98.630 73 1 0 1 73 5 77 5.48e-44 147
Msa1397100 AT4G05320.6 98.630 73 1 0 1 73 81 153 5.48e-44 147
Msa1397100 AT4G05320.6 98.630 73 1 0 1 73 157 229 5.48e-44 147
Msa1397100 AT4G05320.6 98.630 73 1 0 1 73 233 305 5.48e-44 147
Msa1397100 AT4G05320.6 98.630 73 1 0 1 73 309 381 7.08e-44 147
Msa1397100 AT4G05320.3 98.630 73 1 0 1 73 5 77 5.48e-44 147
Msa1397100 AT4G05320.3 98.630 73 1 0 1 73 81 153 5.48e-44 147
Msa1397100 AT4G05320.3 98.630 73 1 0 1 73 157 229 5.48e-44 147
Msa1397100 AT4G05320.3 98.630 73 1 0 1 73 233 305 5.48e-44 147
Msa1397100 AT4G05320.3 98.630 73 1 0 1 73 309 381 7.08e-44 147
Msa1397100 AT5G37640.1 95.890 73 3 0 1 73 83 155 1.10e-43 145
Msa1397100 AT5G37640.1 91.781 73 6 0 1 73 159 231 1.70e-39 134
Msa1397100 AT5G37640.1 91.781 73 5 1 1 72 235 307 1.82e-37 129
Msa1397100 AT5G37640.1 79.167 72 15 0 2 73 8 79 3.90e-32 115
Msa1397100 AT4G05320.2 98.630 73 1 0 1 73 5 77 2.12e-43 147
Msa1397100 AT4G05320.2 98.630 73 1 0 1 73 81 153 2.12e-43 147
Msa1397100 AT4G05320.2 98.630 73 1 0 1 73 157 229 2.12e-43 147
Msa1397100 AT4G05320.2 98.630 73 1 0 1 73 233 305 2.12e-43 147
Msa1397100 AT4G05320.2 98.630 73 1 0 1 73 309 381 2.12e-43 147
Msa1397100 AT4G05320.2 98.630 73 1 0 1 73 385 457 2.75e-43 147
Msa1397100 AT4G05320.4 98.630 73 1 0 1 73 5 77 2.12e-43 147
Msa1397100 AT4G05320.4 98.630 73 1 0 1 73 81 153 2.12e-43 147
Msa1397100 AT4G05320.4 98.630 73 1 0 1 73 157 229 2.12e-43 147
Msa1397100 AT4G05320.4 98.630 73 1 0 1 73 233 305 2.12e-43 147
Msa1397100 AT4G05320.4 98.630 73 1 0 1 73 309 381 2.12e-43 147
Msa1397100 AT4G05320.4 98.630 73 1 0 1 73 385 457 2.75e-43 147
Msa1397100 AT3G09790.2 91.781 73 6 0 1 73 83 155 4.09e-37 132
Msa1397100 AT3G09790.2 87.500 72 9 0 2 73 8 79 6.07e-35 127
Msa1397100 AT3G09790.2 78.571 70 15 0 1 70 556 625 1.96e-28 108
Msa1397100 AT3G09790.2 68.493 73 23 0 1 73 397 469 1.20e-25 100
Msa1397100 AT3G09790.2 71.831 71 20 0 3 73 249 319 1.36e-25 100
Msa1397100 AT3G09790.2 72.222 72 18 1 1 70 323 394 3.19e-24 96.7
Msa1397100 AT3G09790.2 68.056 72 21 1 2 71 165 236 2.14e-23 94.4
Msa1397100 AT3G09790.2 68.056 72 23 0 2 73 481 552 5.39e-23 93.2
Msa1397100 AT3G09790.1 91.781 73 6 0 1 73 83 155 4.09e-37 132
Msa1397100 AT3G09790.1 87.500 72 9 0 2 73 8 79 6.07e-35 127
Msa1397100 AT3G09790.1 78.571 70 15 0 1 70 556 625 1.96e-28 108
Msa1397100 AT3G09790.1 68.493 73 23 0 1 73 397 469 1.20e-25 100
Msa1397100 AT3G09790.1 71.831 71 20 0 3 73 249 319 1.36e-25 100
Msa1397100 AT3G09790.1 72.222 72 18 1 1 70 323 394 3.19e-24 96.7
Msa1397100 AT3G09790.1 68.056 72 21 1 2 71 165 236 2.14e-23 94.4
Msa1397100 AT3G09790.1 68.056 72 23 0 2 73 481 552 5.39e-23 93.2
Msa1397100 AT1G53930.1 75.362 69 17 0 1 69 90 158 1.07e-30 107
Msa1397100 AT1G11980.1 55.556 72 32 0 1 72 5 76 6.06e-23 85.5
Msa1397100 AT1G53950.1 61.194 67 26 0 1 67 73 139 1.22e-22 86.7
Msa1397100 AT5G42220.2 41.176 68 40 0 1 68 28 95 1.51e-11 60.5
Msa1397100 AT5G42220.1 41.176 68 40 0 1 68 28 95 1.51e-11 60.5

Find 39 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAGAAATTAACCTTTC+TGG 0.099822 tig0022126:-65643 None:intergenic
TCCATCTTCCAACTGCTTTC+CGG 0.264402 tig0022126:-65597 None:intergenic
CTTATCCTGGTTATACTTCC+TGG 0.288777 tig0022126:-65844 None:intergenic
GTCTACTTGATCTTCTTCTT+TGG 0.291217 tig0022126:-67216 None:intergenic
AAGATCAACCTCTGCTGGTC+CGG 0.328982 tig0022126:-65572 None:intergenic
CTCAAGGGTGATAGTCTTGC+CGG 0.357525 tig0022126:-65390 None:intergenic
AATCATTGAGCCTTCTTTGA+TGG 0.363914 tig0022126:+65815 Msa1397100:CDS
CAACGTCAAAGCTAAGATTC+AGG 0.397707 tig0022126:+65436 Msa1397100:CDS
AGATCAACCTCTGCTGGTCC+GGG 0.424083 tig0022126:-65571 None:intergenic
AATTCTGTTGGAAGTTGAAC+TGG 0.449207 tig0022126:+67318 Msa1397100:three_prime_UTR
CTTCTTTGATGGCGTTGGCC+AGG 0.452976 tig0022126:+65826 Msa1397100:CDS
CGGCGAAGATCAACCTCTGC+TGG 0.466798 tig0022126:-65577 None:intergenic
CTAAGAAGCTAATTATCAAA+AGG 0.480970 tig0022126:-67286 None:intergenic
TGAGCCTTCTTTGATGGCGT+TGG 0.490761 tig0022126:+65821 Msa1397100:CDS
CTGGCCAACGCCATCAAAGA+AGG 0.492085 tig0022126:-65825 None:intergenic
TGCGGCAGATAGTCTTATCC+TGG 0.502333 tig0022126:-65857 None:intergenic
GCCGGAAAGCAGTTGGAAGA+TGG 0.509801 tig0022126:+65596 Msa1397100:CDS
TTCCTGCAGTTGACAGCACG+AGG 0.524526 tig0022126:-67069 None:intergenic
TAGTATTGTATGAATTCTGT+TGG 0.524734 tig0022126:+67306 Msa1397100:three_prime_UTR
GGTGATAGTCTTGCCGGTGA+GGG 0.538859 tig0022126:-65384 None:intergenic
GCTAAGATTCAGGATAAAGA+AGG 0.540669 tig0022126:+65446 Msa1397100:CDS
CAGCAGAGGTTGATCTTCGC+CGG 0.541092 tig0022126:+65578 Msa1397100:CDS
GAAGTGTGGACACAGCAATC+AGG 0.542669 tig0022126:+67095 Msa1397100:CDS
ACCCTCGTGCTGTCAACTGC+AGG 0.545009 tig0022126:+67067 Msa1397100:CDS
GATCTTCGCCGGAAAGCAGT+TGG 0.546373 tig0022126:+65589 Msa1397100:CDS
GGGTGATAGTCTTGCCGGTG+AGG 0.566343 tig0022126:-65385 None:intergenic
CTGGATGTTGTAGTCAGCAA+GGG 0.569635 tig0022126:-65624 None:intergenic
TGTCGCTTGACTCCACCTCA+AGG 0.574617 tig0022126:-65406 None:intergenic
ATCAACCTCTGCTGGTCCGG+GGG 0.575505 tig0022126:-65569 None:intergenic
ATCTTCGTGAAAACCCTCAC+CGG 0.581247 tig0022126:+65371 None:intergenic
TCTGGATGTTGTAGTCAGCA+AGG 0.585018 tig0022126:-65625 None:intergenic
GTTGGCCAGGAAGTATAACC+AGG 0.589917 tig0022126:+65839 Msa1397100:CDS
GATCAACCTCTGCTGGTCCG+GGG 0.600001 tig0022126:-65570 None:intergenic
CAAGACTATCACCCTTGAGG+TGG 0.603784 tig0022126:+65394 Msa1397100:CDS
CAATTGTTTAGGAATTCCCC+CGG 0.609118 tig0022126:+65553 Msa1397100:intron
GTCGCTTGACTCCACCTCAA+GGG 0.609137 tig0022126:-65405 None:intergenic
GCTGACTACAACATCCAGAA+AGG 0.625044 tig0022126:+65629 Msa1397100:CDS
CGGCAAGACTATCACCCTTG+AGG 0.665715 tig0022126:+65391 Msa1397100:CDS
TCCTGCAGTTGACAGCACGA+GGG 0.675676 tig0022126:-67068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTAAAATAGTTAATATA+TGG + tig0022126:66225-66244 Msa1397100:intron 10.0%
!! TGTTAAAATAGTTAATATAT+GGG + tig0022126:66226-66245 Msa1397100:intron 10.0%
!!! TTATTATTATTTAGTCTTAA+TGG + tig0022126:67166-67185 Msa1397100:intron 10.0%
!! ATGTTAAAATAGTTAATATA+TGG + tig0022126:66225-66244 Msa1397100:intron 10.0%
!! TGTTAAAATAGTTAATATAT+GGG + tig0022126:66226-66245 Msa1397100:intron 10.0%
!!! TTATTATTATTTAGTCTTAA+TGG + tig0022126:67166-67185 Msa1397100:intron 10.0%
!!! TTGTTGCTTTTTATTTTTTT+TGG + tig0022126:67418-67437 Msa1397100:three_prime_UTR 15.0%
!!! TTTTTTTGGTACAATAATTT+TGG + tig0022126:67432-67451 Msa1397100:three_prime_UTR 15.0%
!!! TTGTTGCTTTTTATTTTTTT+TGG + tig0022126:67418-67437 Msa1397100:three_prime_UTR 15.0%
!!! TTTTTTTGGTACAATAATTT+TGG + tig0022126:67432-67451 Msa1397100:three_prime_UTR 15.0%
!! TTTCTTTCTTTCAATTGTTT+AGG + tig0022126:65542-65561 Msa1397100:intron 20.0%
!! AATCATCTGAATGTTTAAAA+AGG + tig0022126:66151-66170 Msa1397100:intron 20.0%
!!! TTAAAAAGGTTACTTTTCTT+TGG + tig0022126:66165-66184 Msa1397100:intron 20.0%
!! AAATAGTTAATATATGGGAT+AGG + tig0022126:66231-66250 Msa1397100:intron 20.0%
!!! TATAAAAGGTATTGTTATCA+CGG - tig0022126:66333-66352 None:intergenic 20.0%
!!! CCAAGGTATTTAAATATAAA+AGG - tig0022126:66347-66366 None:intergenic 20.0%
!!! CCTTTTATATTTAAATACCT+TGG + tig0022126:66344-66363 Msa1397100:intron 20.0%
!! AGTAAAATAATCTCTTTCTA+TGG - tig0022126:66674-66693 None:intergenic 20.0%
!!! ATAGAAAGAGATTATTTTAC+TGG + tig0022126:66673-66692 Msa1397100:intron 20.0%
!! AAAATAATAGTAATTGCCTA+GGG + tig0022126:66838-66857 Msa1397100:intron 20.0%
!! CAGAATAATACAATATAACT+AGG - tig0022126:66923-66942 None:intergenic 20.0%
!!! TTTTGTTGATGATTTTGTTT+TGG + tig0022126:67344-67363 Msa1397100:three_prime_UTR 20.0%
!! TTTCTTTCTTTCAATTGTTT+AGG + tig0022126:65542-65561 Msa1397100:intron 20.0%
!! AATCATCTGAATGTTTAAAA+AGG + tig0022126:66151-66170 Msa1397100:intron 20.0%
!!! TTAAAAAGGTTACTTTTCTT+TGG + tig0022126:66165-66184 Msa1397100:intron 20.0%
!! AAATAGTTAATATATGGGAT+AGG + tig0022126:66231-66250 Msa1397100:intron 20.0%
!!! TATAAAAGGTATTGTTATCA+CGG - tig0022126:66333-66352 None:intergenic 20.0%
!!! CCAAGGTATTTAAATATAAA+AGG - tig0022126:66347-66366 None:intergenic 20.0%
!!! CCTTTTATATTTAAATACCT+TGG + tig0022126:66344-66363 Msa1397100:intron 20.0%
!! AGTAAAATAATCTCTTTCTA+TGG - tig0022126:66674-66693 None:intergenic 20.0%
!!! ATAGAAAGAGATTATTTTAC+TGG + tig0022126:66673-66692 Msa1397100:intron 20.0%
!! AAAATAATAGTAATTGCCTA+GGG + tig0022126:66838-66857 Msa1397100:intron 20.0%
!! CAGAATAATACAATATAACT+AGG - tig0022126:66923-66942 None:intergenic 20.0%
!!! TTTTGTTGATGATTTTGTTT+TGG + tig0022126:67344-67363 Msa1397100:three_prime_UTR 20.0%
! AAAAGAGAAAAAAATGGATC+TGG - tig0022126:65491-65510 None:intergenic 25.0%
! GAAGGAAAAAGAGAAAAAAA+TGG - tig0022126:65497-65516 None:intergenic 25.0%
! AATTCAGAAATTAACCTTTC+TGG - tig0022126:65646-65665 None:intergenic 25.0%
! AACACTTTAGACTTTAGTTA+AGG + tig0022126:66043-66062 Msa1397100:intron 25.0%
!! ATTTTGCAAATGAATACCTT+TGG - tig0022126:66823-66842 None:intergenic 25.0%
! CAAAATAATAGTAATTGCCT+AGG + tig0022126:66837-66856 Msa1397100:intron 25.0%
! AAATAATAGTAATTGCCTAG+GGG + tig0022126:66839-66858 Msa1397100:intron 25.0%
! ATAGTATCACATAAGATGTA+GGG - tig0022126:66893-66912 None:intergenic 25.0%
! TATAGTATCACATAAGATGT+AGG - tig0022126:66894-66913 None:intergenic 25.0%
! TTATAGTTGCCATCTATTAT+TGG + tig0022126:66964-66983 Msa1397100:intron 25.0%
! AAGATTTCATTCAATATGAC+AGG - tig0022126:67142-67161 None:intergenic 25.0%
!!! TATTTTTTGTATTGCAGTTG+AGG + tig0022126:67193-67212 Msa1397100:intron 25.0%
! CTAAGAAGCTAATTATCAAA+AGG - tig0022126:67289-67308 None:intergenic 25.0%
! TAGTATTGTATGAATTCTGT+TGG + tig0022126:67306-67325 Msa1397100:three_prime_UTR 25.0%
!!! CAATAATTTTGGTGCTTTTT+TGG + tig0022126:67443-67462 Msa1397100:three_prime_UTR 25.0%
! AAAAGAGAAAAAAATGGATC+TGG - tig0022126:65491-65510 None:intergenic 25.0%
! GAAGGAAAAAGAGAAAAAAA+TGG - tig0022126:65497-65516 None:intergenic 25.0%
! AATTCAGAAATTAACCTTTC+TGG - tig0022126:65646-65665 None:intergenic 25.0%
! AACACTTTAGACTTTAGTTA+AGG + tig0022126:66043-66062 Msa1397100:intron 25.0%
!! ATTTTGCAAATGAATACCTT+TGG - tig0022126:66823-66842 None:intergenic 25.0%
! CAAAATAATAGTAATTGCCT+AGG + tig0022126:66837-66856 Msa1397100:intron 25.0%
! AAATAATAGTAATTGCCTAG+GGG + tig0022126:66839-66858 Msa1397100:intron 25.0%
! ATAGTATCACATAAGATGTA+GGG - tig0022126:66893-66912 None:intergenic 25.0%
! TATAGTATCACATAAGATGT+AGG - tig0022126:66894-66913 None:intergenic 25.0%
! TTATAGTTGCCATCTATTAT+TGG + tig0022126:66964-66983 Msa1397100:intron 25.0%
! AAGATTTCATTCAATATGAC+AGG - tig0022126:67142-67161 None:intergenic 25.0%
!!! TATTTTTTGTATTGCAGTTG+AGG + tig0022126:67193-67212 Msa1397100:intron 25.0%
! CTAAGAAGCTAATTATCAAA+AGG - tig0022126:67289-67308 None:intergenic 25.0%
! TAGTATTGTATGAATTCTGT+TGG + tig0022126:67306-67325 Msa1397100:three_prime_UTR 25.0%
!!! CAATAATTTTGGTGCTTTTT+TGG + tig0022126:67443-67462 Msa1397100:three_prime_UTR 25.0%
ATCAAACAAAAACGAATCGA+AGG - tig0022126:65515-65534 None:intergenic 30.0%
! TTGTGTTATTGGTATTGGAT+TGG + tig0022126:65903-65922 Msa1397100:intron 30.0%
TTAGACTTTAGTTAAGGTTC+AGG + tig0022126:66049-66068 Msa1397100:intron 30.0%
!!! TCAGGTTGTACATTTTTTTG+AGG + tig0022126:66067-66086 Msa1397100:intron 30.0%
TGCAATAAGTGCAAATTCAT+AGG + tig0022126:66198-66217 Msa1397100:intron 30.0%
! AATGATGGTTTTCTTCAGTT+TGG + tig0022126:66274-66293 Msa1397100:intron 30.0%
TTGGCATTACATACACTTAT+AGG + tig0022126:66293-66312 Msa1397100:intron 30.0%
! AGTTCATACATCTGTTGTTT+CGG - tig0022126:66421-66440 None:intergenic 30.0%
! TTCAATGTAATCAGAAGTGT+CGG - tig0022126:66517-66536 None:intergenic 30.0%
ACTTCTGATTACATTGAATC+AGG + tig0022126:66519-66538 Msa1397100:intron 30.0%
! GTCGACAACAATAAGATTTT+GGG - tig0022126:66552-66571 None:intergenic 30.0%
GATTCATACACTATGAAGTA+TGG - tig0022126:66609-66628 None:intergenic 30.0%
!!! ACACATGATTTTGAAACCAA+AGG + tig0022126:66804-66823 Msa1397100:intron 30.0%
AATAATAGTAATTGCCTAGG+GGG + tig0022126:66840-66859 Msa1397100:intron 30.0%
ACAATTATAAGTAAGCACAC+TGG - tig0022126:67021-67040 None:intergenic 30.0%
TACTTATAATTGTGCTGTAC+AGG + tig0022126:67028-67047 Msa1397100:intron 30.0%
!!! GACTTTTTTGTTGTCATTAC+TGG + tig0022126:67257-67276 Msa1397100:three_prime_UTR 30.0%
!!! CTTTTTTGGTGATATTCTGT+GGG + tig0022126:67457-67476 Msa1397100:three_prime_UTR 30.0%
ATCAAACAAAAACGAATCGA+AGG - tig0022126:65515-65534 None:intergenic 30.0%
! TTGTGTTATTGGTATTGGAT+TGG + tig0022126:65903-65922 Msa1397100:intron 30.0%
TTAGACTTTAGTTAAGGTTC+AGG + tig0022126:66049-66068 Msa1397100:intron 30.0%
!!! TCAGGTTGTACATTTTTTTG+AGG + tig0022126:66067-66086 Msa1397100:intron 30.0%
TGCAATAAGTGCAAATTCAT+AGG + tig0022126:66198-66217 Msa1397100:intron 30.0%
! AATGATGGTTTTCTTCAGTT+TGG + tig0022126:66274-66293 Msa1397100:intron 30.0%
TTGGCATTACATACACTTAT+AGG + tig0022126:66293-66312 Msa1397100:intron 30.0%
! AGTTCATACATCTGTTGTTT+CGG - tig0022126:66421-66440 None:intergenic 30.0%
! TTCAATGTAATCAGAAGTGT+CGG - tig0022126:66517-66536 None:intergenic 30.0%
ACTTCTGATTACATTGAATC+AGG + tig0022126:66519-66538 Msa1397100:intron 30.0%
! GTCGACAACAATAAGATTTT+GGG - tig0022126:66552-66571 None:intergenic 30.0%
GATTCATACACTATGAAGTA+TGG - tig0022126:66609-66628 None:intergenic 30.0%
!!! ACACATGATTTTGAAACCAA+AGG + tig0022126:66804-66823 Msa1397100:intron 30.0%
AATAATAGTAATTGCCTAGG+GGG + tig0022126:66840-66859 Msa1397100:intron 30.0%
ACAATTATAAGTAAGCACAC+TGG - tig0022126:67021-67040 None:intergenic 30.0%
TACTTATAATTGTGCTGTAC+AGG + tig0022126:67028-67047 Msa1397100:intron 30.0%
!!! GACTTTTTTGTTGTCATTAC+TGG + tig0022126:67257-67276 Msa1397100:three_prime_UTR 30.0%
!!! CTTTTTTGGTGATATTCTGT+GGG + tig0022126:67457-67476 Msa1397100:three_prime_UTR 30.0%
GCTAAGATTCAGGATAAAGA+AGG + tig0022126:65446-65465 Msa1397100:CDS 35.0%
TGGATCTGGTTATTTGAGTA+AGG - tig0022126:65477-65496 None:intergenic 35.0%
TGAATGACTCTTGTCTGAAT+TGG + tig0022126:65726-65745 Msa1397100:intron 35.0%
GAATGACTCTTGTCTGAATT+GGG + tig0022126:65727-65746 Msa1397100:intron 35.0%
AATGACTCTTGTCTGAATTG+GGG + tig0022126:65728-65747 Msa1397100:intron 35.0%
!!! CAACTTTGCATCTTGTTTTG+AGG + tig0022126:65781-65800 Msa1397100:CDS 35.0%
AATCATTGAGCCTTCTTTGA+TGG + tig0022126:65815-65834 Msa1397100:CDS 35.0%
AGATTGTGCAAACTTACTTG+CGG - tig0022126:65878-65897 None:intergenic 35.0%
GAGCACTAAAATCATGTCAA+AGG - tig0022126:66111-66130 None:intergenic 35.0%
! GAAAACCATCATTTTCGATG+AGG - tig0022126:66267-66286 None:intergenic 35.0%
GCAAAATATCAACACAACCA+AGG - tig0022126:66364-66383 None:intergenic 35.0%
!! TGGTTGTGTTGATATTTTGC+TGG + tig0022126:66364-66383 Msa1397100:intron 35.0%
!! GGTTGTGTTGATATTTTGCT+GGG + tig0022126:66365-66384 Msa1397100:intron 35.0%
! CGTCGACAACAATAAGATTT+TGG - tig0022126:66553-66572 None:intergenic 35.0%
ATTCGTGTCAATGTTGTGTT+TGG + tig0022126:66574-66593 Msa1397100:intron 35.0%
CACATCTTCGTTCAAACAAT+TGG + tig0022126:66628-66647 Msa1397100:intron 35.0%
! ATGAATGTTTGAAACCTGTC+TGG + tig0022126:66703-66722 Msa1397100:intron 35.0%
GATGGCAACTATAATTCAAG+TGG - tig0022126:66958-66977 None:intergenic 35.0%
TTGCCATCTATTATTGGAAG+CGG + tig0022126:66970-66989 Msa1397100:intron 35.0%
GTCTACTTGATCTTCTTCTT+TGG - tig0022126:67219-67238 None:intergenic 35.0%
!!! AAGTAGACTGTTTTGATTGC+TGG + tig0022126:67231-67250 Msa1397100:exon 35.0%
AATTCTGTTGGAAGTTGAAC+TGG + tig0022126:67318-67337 Msa1397100:three_prime_UTR 35.0%
!!! GCTTTTTTGGTGATATTCTG+TGG + tig0022126:67456-67475 Msa1397100:three_prime_UTR 35.0%
! GTGATTTTTCCTAAAAGTCG+AGG + tig0022126:67506-67525 Msa1397100:three_prime_UTR 35.0%
GCTAAGATTCAGGATAAAGA+AGG + tig0022126:65446-65465 Msa1397100:CDS 35.0%
TGGATCTGGTTATTTGAGTA+AGG - tig0022126:65477-65496 None:intergenic 35.0%
TGAATGACTCTTGTCTGAAT+TGG + tig0022126:65726-65745 Msa1397100:intron 35.0%
GAATGACTCTTGTCTGAATT+GGG + tig0022126:65727-65746 Msa1397100:intron 35.0%
AATGACTCTTGTCTGAATTG+GGG + tig0022126:65728-65747 Msa1397100:intron 35.0%
!!! CAACTTTGCATCTTGTTTTG+AGG + tig0022126:65781-65800 Msa1397100:CDS 35.0%
AATCATTGAGCCTTCTTTGA+TGG + tig0022126:65815-65834 Msa1397100:CDS 35.0%
AGATTGTGCAAACTTACTTG+CGG - tig0022126:65878-65897 None:intergenic 35.0%
GAGCACTAAAATCATGTCAA+AGG - tig0022126:66111-66130 None:intergenic 35.0%
! GAAAACCATCATTTTCGATG+AGG - tig0022126:66267-66286 None:intergenic 35.0%
GCAAAATATCAACACAACCA+AGG - tig0022126:66364-66383 None:intergenic 35.0%
!! TGGTTGTGTTGATATTTTGC+TGG + tig0022126:66364-66383 Msa1397100:intron 35.0%
!! GGTTGTGTTGATATTTTGCT+GGG + tig0022126:66365-66384 Msa1397100:intron 35.0%
! CGTCGACAACAATAAGATTT+TGG - tig0022126:66553-66572 None:intergenic 35.0%
ATTCGTGTCAATGTTGTGTT+TGG + tig0022126:66574-66593 Msa1397100:intron 35.0%
CACATCTTCGTTCAAACAAT+TGG + tig0022126:66628-66647 Msa1397100:intron 35.0%
! ATGAATGTTTGAAACCTGTC+TGG + tig0022126:66703-66722 Msa1397100:intron 35.0%
GATGGCAACTATAATTCAAG+TGG - tig0022126:66958-66977 None:intergenic 35.0%
TTGCCATCTATTATTGGAAG+CGG + tig0022126:66970-66989 Msa1397100:intron 35.0%
GTCTACTTGATCTTCTTCTT+TGG - tig0022126:67219-67238 None:intergenic 35.0%
!!! AAGTAGACTGTTTTGATTGC+TGG + tig0022126:67231-67250 Msa1397100:exon 35.0%
AATTCTGTTGGAAGTTGAAC+TGG + tig0022126:67318-67337 Msa1397100:three_prime_UTR 35.0%
!!! GCTTTTTTGGTGATATTCTG+TGG + tig0022126:67456-67475 Msa1397100:three_prime_UTR 35.0%
CAACGTCAAAGCTAAGATTC+AGG + tig0022126:65436-65455 Msa1397100:CDS 40.0%
CAATTGTTTAGGAATTCCCC+CGG + tig0022126:65553-65572 Msa1397100:intron 40.0%
CTTATCCTGGTTATACTTCC+TGG - tig0022126:65847-65866 None:intergenic 40.0%
GCAAGTAAGTTTGCACAATC+TGG + tig0022126:65877-65896 Msa1397100:intron 40.0%
!! CAATCTGGCTCTTGTGTTAT+TGG + tig0022126:65892-65911 Msa1397100:intron 40.0%
! GGCTCTTGTGTTATTGGTAT+TGG + tig0022126:65898-65917 Msa1397100:intron 40.0%
! TTTTCCTACAGTTGTCAACG+AGG - tig0022126:66133-66152 None:intergenic 40.0%
CACAACCTCATCGAAAATGA+TGG + tig0022126:66259-66278 Msa1397100:intron 40.0%
GCACATACACTTCTGATTGA+AGG + tig0022126:66446-66465 Msa1397100:intron 40.0%
!! TGGAACAGTTCTAAGACAGT+TGG - tig0022126:66654-66673 None:intergenic 40.0%
CACAAAATCTCAATCCAGAC+AGG - tig0022126:66720-66739 None:intergenic 40.0%
CACACGTAAGCAGATATCTA+AGG - tig0022126:66774-66793 None:intergenic 40.0%
TGCCATCTATTATTGGAAGC+GGG + tig0022126:66971-66990 Msa1397100:intron 40.0%
AACTGCAGGAAAAAGAAGTG+TGG + tig0022126:67081-67100 Msa1397100:CDS 40.0%
!!! AGACTGTTTTGATTGCTGGA+AGG + tig0022126:67235-67254 Msa1397100:exon 40.0%
CAACGTCAAAGCTAAGATTC+AGG + tig0022126:65436-65455 Msa1397100:CDS 40.0%
CAATTGTTTAGGAATTCCCC+CGG + tig0022126:65553-65572 Msa1397100:intron 40.0%
CTTATCCTGGTTATACTTCC+TGG - tig0022126:65847-65866 None:intergenic 40.0%
GCAAGTAAGTTTGCACAATC+TGG + tig0022126:65877-65896 Msa1397100:intron 40.0%
!! CAATCTGGCTCTTGTGTTAT+TGG + tig0022126:65892-65911 Msa1397100:intron 40.0%
! GGCTCTTGTGTTATTGGTAT+TGG + tig0022126:65898-65917 Msa1397100:intron 40.0%
! TTTTCCTACAGTTGTCAACG+AGG - tig0022126:66133-66152 None:intergenic 40.0%
CACAACCTCATCGAAAATGA+TGG + tig0022126:66259-66278 Msa1397100:intron 40.0%
GCACATACACTTCTGATTGA+AGG + tig0022126:66446-66465 Msa1397100:intron 40.0%
!! TGGAACAGTTCTAAGACAGT+TGG - tig0022126:66654-66673 None:intergenic 40.0%
CACAAAATCTCAATCCAGAC+AGG - tig0022126:66720-66739 None:intergenic 40.0%
CACACGTAAGCAGATATCTA+AGG - tig0022126:66774-66793 None:intergenic 40.0%
TGCCATCTATTATTGGAAGC+GGG + tig0022126:66971-66990 Msa1397100:intron 40.0%
AACTGCAGGAAAAAGAAGTG+TGG + tig0022126:67081-67100 Msa1397100:CDS 40.0%
!!! AGACTGTTTTGATTGCTGGA+AGG + tig0022126:67235-67254 Msa1397100:exon 40.0%
TCCATCTTCCAACTGCTTTC+CGG - tig0022126:65600-65619 None:intergenic 45.0%
CTGGATGTTGTAGTCAGCAA+GGG - tig0022126:65627-65646 None:intergenic 45.0%
TCTGGATGTTGTAGTCAGCA+AGG - tig0022126:65628-65647 None:intergenic 45.0%
GCTGACTACAACATCCAGAA+AGG + tig0022126:65629-65648 Msa1397100:CDS 45.0%
!!! CATCTTGTTTTGAGGCTTCG+TGG + tig0022126:65789-65808 Msa1397100:CDS 45.0%
! TTTGAGGCACATACCCTTGT+TGG + tig0022126:66083-66102 Msa1397100:intron 45.0%
!! CATGTCAAAGGCACCAACAA+GGG - tig0022126:66099-66118 None:intergenic 45.0%
!! TCATGTCAAAGGCACCAACA+AGG - tig0022126:66100-66119 None:intergenic 45.0%
GCCATCTATTATTGGAAGCG+GGG + tig0022126:66972-66991 Msa1397100:intron 45.0%
TCCATCTTCCAACTGCTTTC+CGG - tig0022126:65600-65619 None:intergenic 45.0%
CTGGATGTTGTAGTCAGCAA+GGG - tig0022126:65627-65646 None:intergenic 45.0%
TCTGGATGTTGTAGTCAGCA+AGG - tig0022126:65628-65647 None:intergenic 45.0%
GCTGACTACAACATCCAGAA+AGG + tig0022126:65629-65648 Msa1397100:CDS 45.0%
!!! CATCTTGTTTTGAGGCTTCG+TGG + tig0022126:65789-65808 Msa1397100:CDS 45.0%
! TTTGAGGCACATACCCTTGT+TGG + tig0022126:66083-66102 Msa1397100:intron 45.0%
!! CATGTCAAAGGCACCAACAA+GGG - tig0022126:66099-66118 None:intergenic 45.0%
!! TCATGTCAAAGGCACCAACA+AGG - tig0022126:66100-66119 None:intergenic 45.0%
GCCATCTATTATTGGAAGCG+GGG + tig0022126:66972-66991 Msa1397100:intron 45.0%
! CTCAAGGGTGATAGTCTTGC+CGG - tig0022126:65393-65412 None:intergenic 50.0%
CAAGACTATCACCCTTGAGG+TGG + tig0022126:65394-65413 Msa1397100:CDS 50.0%
AAGATCAACCTCTGCTGGTC+CGG - tig0022126:65575-65594 None:intergenic 50.0%
!!! CTTGTTTTGAGGCTTCGTGG+TGG + tig0022126:65792-65811 Msa1397100:CDS 50.0%
!! TGAGCCTTCTTTGATGGCGT+TGG + tig0022126:65821-65840 Msa1397100:CDS 50.0%
! GTTGGCCAGGAAGTATAACC+AGG + tig0022126:65839-65858 Msa1397100:CDS 50.0%
!! TGCGGCAGATAGTCTTATCC+TGG - tig0022126:65860-65879 None:intergenic 50.0%
TGCTCCTCGTTGACAACTGT+AGG + tig0022126:66126-66145 Msa1397100:intron 50.0%
GCCCCGCTTCCAATAATAGA+TGG - tig0022126:66976-66995 None:intergenic 50.0%
GAAGTGTGGACACAGCAATC+AGG + tig0022126:67095-67114 Msa1397100:CDS 50.0%
! CTCAAGGGTGATAGTCTTGC+CGG - tig0022126:65393-65412 None:intergenic 50.0%
CAAGACTATCACCCTTGAGG+TGG + tig0022126:65394-65413 Msa1397100:CDS 50.0%
AAGATCAACCTCTGCTGGTC+CGG - tig0022126:65575-65594 None:intergenic 50.0%
!!! CTTGTTTTGAGGCTTCGTGG+TGG + tig0022126:65792-65811 Msa1397100:CDS 50.0%
!! TGAGCCTTCTTTGATGGCGT+TGG + tig0022126:65821-65840 Msa1397100:CDS 50.0%
! GTTGGCCAGGAAGTATAACC+AGG + tig0022126:65839-65858 Msa1397100:CDS 50.0%
!! TGCGGCAGATAGTCTTATCC+TGG - tig0022126:65860-65879 None:intergenic 50.0%
TGCTCCTCGTTGACAACTGT+AGG + tig0022126:66126-66145 Msa1397100:intron 50.0%
GCCCCGCTTCCAATAATAGA+TGG - tig0022126:66976-66995 None:intergenic 50.0%
GAAGTGTGGACACAGCAATC+AGG + tig0022126:67095-67114 Msa1397100:CDS 50.0%
! GGTGATAGTCTTGCCGGTGA+GGG - tig0022126:65387-65406 None:intergenic 55.0%
CGGCAAGACTATCACCCTTG+AGG + tig0022126:65391-65410 Msa1397100:CDS 55.0%
GTCGCTTGACTCCACCTCAA+GGG - tig0022126:65408-65427 None:intergenic 55.0%
! TGTCGCTTGACTCCACCTCA+AGG - tig0022126:65409-65428 None:intergenic 55.0%
AGATCAACCTCTGCTGGTCC+GGG - tig0022126:65574-65593 None:intergenic 55.0%
! CAGCAGAGGTTGATCTTCGC+CGG + tig0022126:65578-65597 Msa1397100:CDS 55.0%
GATCTTCGCCGGAAAGCAGT+TGG + tig0022126:65589-65608 Msa1397100:CDS 55.0%
GCCGGAAAGCAGTTGGAAGA+TGG + tig0022126:65596-65615 Msa1397100:CDS 55.0%
CTGGCCAACGCCATCAAAGA+AGG - tig0022126:65828-65847 None:intergenic 55.0%
!! CTTCTTTGATGGCGTTGGCC+AGG + tig0022126:65826-65845 Msa1397100:CDS 55.0%
GAGTCTGACAGGACACGAGT+CGG - tig0022126:66485-66504 None:intergenic 55.0%
TCCTCTAACATGCACCCCCT+AGG - tig0022126:66857-66876 None:intergenic 55.0%
TCCTGCAGTTGACAGCACGA+GGG - tig0022126:67071-67090 None:intergenic 55.0%
TTCCTGCAGTTGACAGCACG+AGG - tig0022126:67072-67091 None:intergenic 55.0%
! GGTGATAGTCTTGCCGGTGA+GGG - tig0022126:65387-65406 None:intergenic 55.0%
CGGCAAGACTATCACCCTTG+AGG + tig0022126:65391-65410 Msa1397100:CDS 55.0%
GTCGCTTGACTCCACCTCAA+GGG - tig0022126:65408-65427 None:intergenic 55.0%
! TGTCGCTTGACTCCACCTCA+AGG - tig0022126:65409-65428 None:intergenic 55.0%
AGATCAACCTCTGCTGGTCC+GGG - tig0022126:65574-65593 None:intergenic 55.0%
! CAGCAGAGGTTGATCTTCGC+CGG + tig0022126:65578-65597 Msa1397100:CDS 55.0%
GATCTTCGCCGGAAAGCAGT+TGG + tig0022126:65589-65608 Msa1397100:CDS 55.0%
GCCGGAAAGCAGTTGGAAGA+TGG + tig0022126:65596-65615 Msa1397100:CDS 55.0%
CTGGCCAACGCCATCAAAGA+AGG - tig0022126:65828-65847 None:intergenic 55.0%
!! CTTCTTTGATGGCGTTGGCC+AGG + tig0022126:65826-65845 Msa1397100:CDS 55.0%
GAGTCTGACAGGACACGAGT+CGG - tig0022126:66485-66504 None:intergenic 55.0%
TCCTCTAACATGCACCCCCT+AGG - tig0022126:66857-66876 None:intergenic 55.0%
TCCTGCAGTTGACAGCACGA+GGG - tig0022126:67071-67090 None:intergenic 55.0%
TTCCTGCAGTTGACAGCACG+AGG - tig0022126:67072-67091 None:intergenic 55.0%
! GGGTGATAGTCTTGCCGGTG+AGG - tig0022126:65388-65407 None:intergenic 60.0%
ATCAACCTCTGCTGGTCCGG+GGG - tig0022126:65572-65591 None:intergenic 60.0%
GATCAACCTCTGCTGGTCCG+GGG - tig0022126:65573-65592 None:intergenic 60.0%
CGGCGAAGATCAACCTCTGC+TGG - tig0022126:65580-65599 None:intergenic 60.0%
ACAGGACACGAGTCGGACAG+CGG - tig0022126:66478-66497 None:intergenic 60.0%
! GGTGTCACGTCGAGTCTGAC+AGG - tig0022126:66496-66515 None:intergenic 60.0%
! GCCTAGGGGGTGCATGTTAG+AGG + tig0022126:66853-66872 Msa1397100:intron 60.0%
ACCCTCGTGCTGTCAACTGC+AGG + tig0022126:67067-67086 Msa1397100:CDS 60.0%
! GGGTGATAGTCTTGCCGGTG+AGG - tig0022126:65388-65407 None:intergenic 60.0%
ATCAACCTCTGCTGGTCCGG+GGG - tig0022126:65572-65591 None:intergenic 60.0%
GATCAACCTCTGCTGGTCCG+GGG - tig0022126:65573-65592 None:intergenic 60.0%
CGGCGAAGATCAACCTCTGC+TGG - tig0022126:65580-65599 None:intergenic 60.0%
ACAGGACACGAGTCGGACAG+CGG - tig0022126:66478-66497 None:intergenic 60.0%
! GGTGTCACGTCGAGTCTGAC+AGG - tig0022126:66496-66515 None:intergenic 60.0%
! GCCTAGGGGGTGCATGTTAG+AGG + tig0022126:66853-66872 Msa1397100:intron 60.0%
ACCCTCGTGCTGTCAACTGC+AGG + tig0022126:67067-67086 Msa1397100:CDS 60.0%
GAATTCCCCCGGACCAGCAG+AGG + tig0022126:65564-65583 Msa1397100:CDS 65.0%
CAGGACACGAGTCGGACAGC+GGG - tig0022126:66477-66496 None:intergenic 65.0%
GAATTCCCCCGGACCAGCAG+AGG + tig0022126:65564-65583 Msa1397100:CDS 65.0%
CAGGACACGAGTCGGACAGC+GGG - tig0022126:66477-66496 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0022126 gene 65377 67527 65377 ID=Msa1397100;Name=Msa1397100
tig0022126 mRNA 65377 67527 65377 ID=Msa1397100-mRNA-1;Parent=Msa1397100;Name=Msa1397100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.8|1|1|0.8|5|291|124
tig0022126 exon 65377 65467 65377 ID=Msa1397100-mRNA-1:exon:15840;Parent=Msa1397100-mRNA-1
tig0022126 exon 65564 65650 65564 ID=Msa1397100-mRNA-1:exon:15841;Parent=Msa1397100-mRNA-1
tig0022126 exon 65778 65880 65778 ID=Msa1397100-mRNA-1:exon:15842;Parent=Msa1397100-mRNA-1
tig0022126 exon 67050 67116 67050 ID=Msa1397100-mRNA-1:exon:15843;Parent=Msa1397100-mRNA-1
tig0022126 exon 67210 67527 67210 ID=Msa1397100-mRNA-1:exon:15844;Parent=Msa1397100-mRNA-1
tig0022126 CDS 65377 65467 65377 ID=Msa1397100-mRNA-1:cds;Parent=Msa1397100-mRNA-1
tig0022126 CDS 65564 65650 65564 ID=Msa1397100-mRNA-1:cds;Parent=Msa1397100-mRNA-1
tig0022126 CDS 65778 65880 65778 ID=Msa1397100-mRNA-1:cds;Parent=Msa1397100-mRNA-1
tig0022126 CDS 67050 67116 67050 ID=Msa1397100-mRNA-1:cds;Parent=Msa1397100-mRNA-1
tig0022126 CDS 67210 67236 67210 ID=Msa1397100-mRNA-1:cds;Parent=Msa1397100-mRNA-1
tig0022126 three_prime_UTR 67237 67527 67237 ID=Msa1397100-mRNA-1:three_prime_utr;Parent=Msa1397100-mRNA-1
Gene Sequence

>Msa1397100

GTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCAAGCGACACTATCGACAACGTCAAAGCTAAGATTCAGGATAAAGAAGGAATTCCCCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGTACCCTTGCTGACTACAACATCCAGAAAGAATCAACTTTGCATCTTGTTTTGAGGCTTCGTGGTGGAATCATTGAGCCTTCTTTGATGGCGTTGGCCAGGAAGTATAACCAGGATAAGACTATCTGCCGCAAGTGCTATGCACGTTTACACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAG
Protein sequence

>Msa1397100

VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK*