AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 129 sgRNAs with CRISPR-Local

Find 603 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACAACAATATTGTATT+TGG 0.179843 1_3:-641657 Msa0095490:intron
TATTCCATAGATTTATTTCT+TGG 0.184877 1_3:-641779 Msa0095490:intron
TATTCCATAGATTTATTTCT+TGG 0.184877 1_3:+650614 Msa0095500:three_prime_UTR
TATTCCATAGATTTATTTCT+TGG 0.184877 1_3:-651004 None:intergenic
CCATTTCACGGAATCTAATT+TGG 0.209963 1_3:-642250 Msa0095490:intron
CCATTTCACGGAATCTAATT+TGG 0.209963 1_3:-651475 None:intergenic
CTTCCCCATCAGTTGTTATT+TGG 0.213555 1_3:+641554 Msa0095500:five_prime_UTR
CTTCCCCATCAGTTGTTATT+TGG 0.213555 1_3:+650779 Msa0095500:three_prime_UTR
TTGAACAACAGTATTGTATT+TGG 0.223829 1_3:-650882 None:intergenic
CATATAAAACTTGATGAAAA+TGG 0.268437 1_3:+642200 Msa0095500:five_prime_UTR
CATATAAAACTTGATGAAAA+TGG 0.268437 1_3:+651425 Msa0095500:three_prime_UTR
ATTCACTTTGATTGTCACTA+TGG 0.299236 1_3:+642158 Msa0095500:five_prime_UTR
ATTCACTTTGATTGTCACTA+TGG 0.299236 1_3:+651383 Msa0095500:three_prime_UTR
TTGAACAGCAATATTGTATT+GGG 0.302256 1_3:+641511 Msa0095500:five_prime_UTR
TTGAACAGCAATATTGTATT+GGG 0.302256 1_3:+650736 Msa0095500:three_prime_UTR
TATATCTTCATGTAAATAAC+TGG 0.311314 1_3:-642116 Msa0095490:intron
TATATCTTCATGTAAATAAC+TGG 0.311314 1_3:-651341 None:intergenic
CAGAGTTCAATCGTAATTAA+TGG 0.330355 1_3:-642615 Msa0095490:intron
TGAACCAAGAAATAAATCTA+TGG 0.348089 1_3:+641775 Msa0095500:five_prime_UTR
TGAACCAAGAAATAAATCTA+TGG 0.348089 1_3:-650618 None:intergenic
TGAACCAAGAAATAAATCTA+TGG 0.348089 1_3:+651000 Msa0095500:three_prime_UTR
ATTGAACAGCAATATTGTAT+TGG 0.349337 1_3:+641510 Msa0095500:five_prime_UTR
ATTGAACAGCAATATTGTAT+TGG 0.349337 1_3:+650735 Msa0095500:three_prime_UTR
TTTGTAAAATAAAATTCTTT+TGG 0.350220 1_3:-650406 None:intergenic
AAAACATAATGGAAATGAAT+TGG 0.357383 1_3:-650217 None:intergenic
GACGGAGCTGCTGCAGAGAT+TGG 0.357540 1_3:+642331 Msa0095500:CDS
ATTATAATGTCTTGCTTTGG+TGG 0.366564 1_3:+641858 Msa0095500:five_prime_UTR
ATTATAATGTCTTGCTTTGG+TGG 0.366564 1_3:+651083 Msa0095500:three_prime_UTR
TTTATTATAATGTCTTGCTT+TGG 0.372677 1_3:+641855 Msa0095500:five_prime_UTR
TTTATTATAATGTCTTGCTT+TGG 0.372677 1_3:+651080 Msa0095500:three_prime_UTR
CTGCTAGATCGGAGATGGGC+CGG 0.378849 1_3:+642308 Msa0095500:CDS
AGGCAATTGTAGAAACAGTT+AGG 0.385993 1_3:-642639 Msa0095490:intron
CCAAATTAGATTCCGTGAAA+TGG 0.389565 1_3:+642250 Msa0095500:exon
CCAAATTAGATTCCGTGAAA+TGG 0.389565 1_3:+651475 Msa0095500:three_prime_UTR
TATTAATGCATAAAACATAA+TGG 0.394982 1_3:-650228 None:intergenic
TTTATTATAAGGTGTTGCTT+TGG 0.402251 1_3:-650536 None:intergenic
CTGGTGCTAGGTTTATTATA+AGG 0.407322 1_3:-650547 None:intergenic
ATTATAAGGTGTTGCTTTGG+AGG 0.407334 1_3:-650533 None:intergenic
AAAGGATAACAAATTCTTGT+TGG 0.411653 1_3:+641743 Msa0095500:five_prime_UTR
AAAGGATAACAAATTCTTGT+TGG 0.411653 1_3:-650650 None:intergenic
AAAGGATAACAAATTCTTGT+TGG 0.411653 1_3:+650968 Msa0095500:three_prime_UTR
TTGTACTTGCCAACGAACTT+AGG 0.419406 1_3:+650580 Msa0095500:three_prime_UTR
AAAGTGAGGATTCATAAGTA+TGG 0.420071 1_3:+641907 Msa0095500:five_prime_UTR
AAAGTGAGGATTCATAAGTA+TGG 0.420071 1_3:+651132 Msa0095500:three_prime_UTR
TATTTGGATGTAATGGATGA+TGG 0.426459 1_3:+641609 Msa0095500:five_prime_UTR
TATTTGGATGTAATGGATGA+TGG 0.426459 1_3:+650834 Msa0095500:three_prime_UTR
CGGGGCTGCTAGATCGGAGA+TGG 0.432256 1_3:+642303 Msa0095500:CDS
CGGGGCTGCTAGATCGGAGA+TGG 0.432256 1_3:+651528 Msa0095500:three_prime_UTR
GATTAATTACCTTTGAAAGA+AGG 0.439535 1_3:-642659 Msa0095490:intron
TTGTACTTGCCAACGAGCTT+AGG 0.440609 1_3:-651038 None:intergenic
CTACAATTGCCTTCTTTCAA+AGG 0.444900 1_3:+642650 Msa0095500:CDS
TTGTACTTGCCAACGAGCTT+AGG 0.453027 1_3:-641813 Msa0095490:intron
TAATACCAAATAACAACTGA+TGG 0.458535 1_3:-641559 Msa0095490:intron
TAATACCAAATAACAACTGA+TGG 0.458535 1_3:-650784 None:intergenic
GAATGTACGCAATCCGTTGA+AGG 0.471008 1_3:-650443 None:intergenic
TATAAGATATTATCCTTCAA+AGG 0.473293 1_3:-641961 Msa0095490:intron
TATAAGATATTATCCTTCAA+AGG 0.473293 1_3:-651186 None:intergenic
GATGGGGAAGAGATTCTAAC+AGG 0.478017 1_3:+650852 Msa0095500:three_prime_UTR
CTCATGCAAGAAACGGTTGA+TGG 0.480355 1_3:+642863 Msa0095500:CDS
TAGTGGAAGTGAGGATTCAT+AGG 0.480538 1_3:-650489 None:intergenic
GAATGAACACAATCCTTTGA+AGG 0.481506 1_3:+641948 Msa0095500:five_prime_UTR
GAATGAACACAATCCTTTGA+AGG 0.481506 1_3:+651173 Msa0095500:three_prime_UTR
AAAAGATGTCCAATGTCAAA+TGG 0.485689 1_3:+642769 Msa0095500:intron
TGCTAGATCGGAGATGGGCC+GGG 0.486001 1_3:+642309 Msa0095500:CDS
GTAATTGATAGATATGCTCT+TGG 0.488896 1_3:+642580 Msa0095500:intron
GATGGGGAAGAGATTCTAAC+TGG 0.489790 1_3:+641627 Msa0095500:five_prime_UTR
AGGTGACGGGGCTGCTAGAT+CGG 0.496214 1_3:+642297 Msa0095500:CDS
AGGTGACGGGGCTGCTAGAT+CGG 0.496214 1_3:+651522 Msa0095500:three_prime_UTR
GGCAATTGTAGAAACAGTTA+GGG 0.498111 1_3:-642638 Msa0095490:intron
TTGGCAAGTACAAAGGTCAT+AGG 0.500807 1_3:-650570 None:intergenic
TTGGCAAGTACAATGGTCAT+AGG 0.502061 1_3:+641823 Msa0095500:five_prime_UTR
AAGAGATAACGAATTGAGCT+TGG 0.506330 1_3:-650290 None:intergenic
TATAAGATATTATCCTTCAA+CGG 0.507135 1_3:+650430 Msa0095500:three_prime_UTR
AAGATATAATGAATTGAGCT+TGG 0.509519 1_3:+642131 Msa0095500:five_prime_UTR
AAGATATAATGAATTGAGCT+TGG 0.509519 1_3:+651356 Msa0095500:three_prime_UTR
AATACCAAATAACAACTGAT+GGG 0.512209 1_3:-641558 Msa0095490:intron
AATACCAAATAACAACTGAT+GGG 0.512209 1_3:-650783 None:intergenic
ATTCACTTTGATTGTTACCA+TGG 0.513095 1_3:-650263 None:intergenic
ATTTGGATGTAATGGATGAT+GGG 0.513339 1_3:+641610 Msa0095500:five_prime_UTR
ATTTGGATGTAATGGATGAT+GGG 0.513339 1_3:+650835 Msa0095500:three_prime_UTR
TAATAAAGCTAGCAGGCCTA+TGG 0.514573 1_3:-651064 None:intergenic
GACATTATAATAAAGATAGC+AGG 0.519254 1_3:-641846 Msa0095490:intron
GACATTATAATAAAGCTAGC+AGG 0.524437 1_3:-651071 None:intergenic
CTGAATATGTTGAAGTGAAA+GGG 0.524733 1_3:+642793 Msa0095500:CDS
TTCCTCGCTCATGCAAGAAA+CGG 0.534516 1_3:+642856 Msa0095500:CDS
TAATAATTCATCACACTCCA+TGG 0.540547 1_3:+650246 Msa0095500:three_prime_UTR
ATAAATCTATGGAATATTGA+AGG 0.543789 1_3:+641786 Msa0095500:five_prime_UTR
ATAAATCTATGGAATATTGA+AGG 0.543789 1_3:-650607 None:intergenic
ATAAATCTATGGAATATTGA+AGG 0.543789 1_3:+651011 Msa0095500:three_prime_UTR
ATATTCAGACCATTTGACAT+TGG 0.548689 1_3:-642778 Msa0095490:intron
AGTTGCGCAAAGGAGGTGAC+GGG 0.556812 1_3:+642284 Msa0095500:CDS
AGTTGCGCAAAGGAGGTGAC+GGG 0.556812 1_3:+651509 Msa0095500:three_prime_UTR
AAGTTGCGCAAAGGAGGTGA+CGG 0.559484 1_3:+642283 Msa0095500:CDS
AAGTTGCGCAAAGGAGGTGA+CGG 0.559484 1_3:+651508 Msa0095500:three_prime_UTR
GAGCAAGCTTTCATTGCTAG+TGG 0.561140 1_3:-650506 None:intergenic
TCTGAATATGTTGAAGTGAA+AGG 0.563055 1_3:+642792 Msa0095500:CDS
GAAGGCGATCCTAAGTTCGT+TGG 0.568959 1_3:-650589 None:intergenic
TCTCTGCAGCAGCTCCGTCC+CGG 0.570077 1_3:-642327 Msa0095490:intron
GCTGCTGCAGAGATTGGAGA+TGG 0.571294 1_3:+642337 Msa0095500:CDS
TTTCATTGCTAGTGAAAGTG+AGG 0.572779 1_3:+641893 Msa0095500:five_prime_UTR
TTTCATTGCTAGTGAAAGTG+AGG 0.572779 1_3:+651118 Msa0095500:three_prime_UTR
CTTCAAAAGTTGCGCAAAGG+AGG 0.573380 1_3:+642277 Msa0095500:CDS
CTTCAAAAGTTGCGCAAAGG+AGG 0.573380 1_3:+651502 Msa0095500:three_prime_UTR
AACCGTTTCTTGCATGAGCG+AGG 0.574230 1_3:-642858 Msa0095490:intron
GTTGTTCAATAAAGAAACAA+AGG 0.577442 1_3:+641671 Msa0095500:five_prime_UTR
CAAGTACAAAGGTCATAGGC+TGG 0.584085 1_3:-650566 None:intergenic
TTTCATTGCTAGTGGAAGTG+AGG 0.586260 1_3:-650498 None:intergenic
AAAGGTCATAGGCTGGTGCT+AGG 0.588145 1_3:-650559 None:intergenic
AGATCGGAGATGGGCCGGGA+CGG 0.593534 1_3:+642313 Msa0095500:CDS
GCTGTTCAATAAAGAAACAA+AGG 0.597283 1_3:-641497 Msa0095490:intron
GCTGTTCAATAAAGAAACAA+AGG 0.597283 1_3:-650722 None:intergenic
TTGGCAAGTACAATGGCCAT+AGG 0.598301 1_3:+651048 Msa0095500:three_prime_UTR
GGGGCTGCTAGATCGGAGAT+GGG 0.600787 1_3:+642304 Msa0095500:CDS
GGGGCTGCTAGATCGGAGAT+GGG 0.600787 1_3:+651529 Msa0095500:three_prime_UTR
GTTGTTCAATAAAGAAACAA+AGG 0.604315 1_3:+650896 Msa0095500:three_prime_UTR
TACCTTCAAAAGTTGCGCAA+AGG 0.612577 1_3:+642274 Msa0095500:CDS
TACCTTCAAAAGTTGCGCAA+AGG 0.612577 1_3:+651499 Msa0095500:three_prime_UTR
AAGTTCGTTGGCAAGTACAA+AGG 0.621574 1_3:-650577 None:intergenic
GAAGGCGATCCTAAGCTCGT+TGG 0.625460 1_3:+641804 Msa0095500:five_prime_UTR
GAAGGCGATCCTAAGCTCGT+TGG 0.625460 1_3:+651029 Msa0095500:three_prime_UTR
GAAGTGAGGATTCATAGGCA+TGG 0.638836 1_3:-650484 None:intergenic
TTTGGATGTAATGGATGATG+GGG 0.641334 1_3:+641611 Msa0095500:five_prime_UTR
TTTGGATGTAATGGATGATG+GGG 0.641334 1_3:+650836 Msa0095500:three_prime_UTR
AAGCTCGTTGGCAAGTACAA+TGG 0.642578 1_3:+651041 Msa0095500:three_prime_UTR
AAGCTCGTTGGCAAGTACAA+TGG 0.644140 1_3:+641816 Msa0095500:five_prime_UTR
ATACCAAATAACAACTGATG+GGG 0.658683 1_3:-641557 Msa0095490:intron
ATACCAAATAACAACTGATG+GGG 0.658683 1_3:-650782 None:intergenic
GTTGCGCAAAGGAGGTGACG+GGG 0.703235 1_3:+642285 Msa0095500:CDS
GTTGCGCAAAGGAGGTGACG+GGG 0.703235 1_3:+651510 Msa0095500:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATCTAATACAA+CGG - chr1_3:641594-641613 Msa0095490:intron 10.0%
!!! ATTTTTATATATCGATTATA+TGG - chr1_3:643538-643557 Msa0095490:intron 10.0%
!! ATATAATCGATATATAAAAA+TGG + chr1_3:643537-643556 Msa0095500:intron 10.0%
!!! TCTTTTTTTTTAAATGAAAA+AGG + chr1_3:648401-648420 Msa0095500:intron 10.0%
!!! AAATAATGGAAAAATATATA+AGG + chr1_3:648430-648449 Msa0095500:intron 10.0%
!! AATTATACTCAAAAAAATTT+AGG + chr1_3:649004-649023 Msa0095500:intron 10.0%
!!! TTTTTTATAAAAATCATTAC+AGG + chr1_3:649121-649140 Msa0095500:intron 10.0%
!! TAAAATAAAATTATCATTTC+AGG + chr1_3:649171-649190 Msa0095500:intron 10.0%
!! CTTAATAAAAAAATCATAAA+AGG - chr1_3:649436-649455 None:intergenic 10.0%
!!! TTTGTAAAATAAAATTCTTT+TGG - chr1_3:650409-650428 None:intergenic 10.0%
!! AAATAAAAAATCTAATACAA+CGG - chr1_3:641594-641613 Msa0095490:intron 10.0%
!!! GTTGTATTAGATTTTTTATT+TGG + chr1_3:641593-641612 Msa0095500:five_prime_UTR 15.0%
!!! AATCAAGTTTTTATGATATA+AGG - chr1_3:642057-642076 Msa0095490:intron 15.0%
!!! ATTCTAAAAAACAATTTTTG+TGG - chr1_3:642448-642467 Msa0095490:intron 15.0%
!! AGATAAATATGAAGTTAAAT+AGG - chr1_3:642963-642982 Msa0095490:intron 15.0%
!!! CGATAACTATTTTATTTATT+TGG + chr1_3:643477-643496 Msa0095500:intron 15.0%
!!! TATTTGGATCTTTAAATTTT+AGG + chr1_3:643493-643512 Msa0095500:intron 15.0%
!!! ATTTGGATCTTTAAATTTTA+GGG + chr1_3:643494-643513 Msa0095500:intron 15.0%
!! AAACTAAATGAATAATTTCA+GGG - chr1_3:643626-643645 Msa0095490:intron 15.0%
!! AATGAAAATTCATTCAATAA+AGG - chr1_3:644782-644801 Msa0095490:intron 15.0%
!!! CAAAAGTAACATTTTTTTTA+CGG - chr1_3:644807-644826 Msa0095490:intron 15.0%
!! TGCAATTAAAAAACAATTAA+AGG - chr1_3:644947-644966 Msa0095490:intron 15.0%
!!! TATTCTAATTTATCCTTTTT+CGG - chr1_3:646391-646410 Msa0095490:intron 15.0%
!!! TGATCAATTTATCTATTTTA+GGG - chr1_3:646417-646436 Msa0095490:intron 15.0%
!! AATTGATCAGAAAATATATA+AGG + chr1_3:646428-646447 Msa0095500:intron 15.0%
!! GCAATTAAAAAAACAATTAA+AGG + chr1_3:646966-646985 Msa0095500:intron 15.0%
!! TAGTTGTACAAATATTTAAA+AGG - chr1_3:647682-647701 None:intergenic 15.0%
!! TAAATAGATTCTAAATAACA+TGG + chr1_3:648058-648077 Msa0095500:intron 15.0%
!! TTGATAAATTTACTTCAAAT+AGG - chr1_3:648317-648336 None:intergenic 15.0%
!! GAAGTAAATTTATCAAATTA+TGG + chr1_3:648321-648340 Msa0095500:intron 15.0%
!! GAAAAAGGAAAATAAAATAA+TGG + chr1_3:648416-648435 Msa0095500:intron 15.0%
!!! ATTCAATTAAATTGTTTTCA+AGG + chr1_3:648747-648766 Msa0095500:intron 15.0%
!! ATTATTATTATTTGTCCAAT+GGG - chr1_3:648987-649006 None:intergenic 15.0%
!! AATTATTATTATTTGTCCAA+TGG - chr1_3:648988-649007 None:intergenic 15.0%
!!! TTTAATTAATCAAAGACTTT+TGG + chr1_3:649391-649410 Msa0095500:intron 15.0%
!!! GTAATTAATTTTATGTTAAG+TGG - chr1_3:650116-650135 None:intergenic 15.0%
!! TATTAATGCATAAAACATAA+TGG - chr1_3:650231-650250 None:intergenic 15.0%
!!! GTTGTATTAGATTTTTTATT+TGG + chr1_3:641593-641612 Msa0095500:five_prime_UTR 15.0%
!!! AATCAAGTTTTTATGATATA+AGG - chr1_3:642057-642076 Msa0095490:intron 15.0%
!!! GATTTTTTATTTGGATGTAA+TGG + chr1_3:641602-641621 Msa0095500:five_prime_UTR 20.0%
!! TTGAACAACAATATTGTATT+TGG - chr1_3:641660-641679 Msa0095490:intron 20.0%
!!! AACTTCTTTTTCTTTATCAA+AGG + chr1_3:641725-641744 Msa0095500:five_prime_UTR 20.0%
!!! TATTCCATAGATTTATTTCT+TGG - chr1_3:650614-650633 None:intergenic 20.0%
!! ATAAATCTATGGAATATTGA+AGG + chr1_3:641786-641805 Msa0095500:five_prime_UTR 20.0%
!! TTTATTATAATGTCTTGCTT+TGG + chr1_3:641855-641874 Msa0095500:five_prime_UTR 20.0%
!! TATAAGATATTATCCTTCAA+AGG - chr1_3:650430-650449 None:intergenic 20.0%
!! ATACTTGCTCAAAAAAAAAA+AGG - chr1_3:642027-642046 Msa0095490:intron 20.0%
!! TATATCTTCATGTAAATAAC+TGG - chr1_3:642119-642138 Msa0095490:intron 20.0%
!! CATATAAAACTTGATGAAAA+TGG + chr1_3:642200-642219 Msa0095500:five_prime_UTR 20.0%
!!! AAAAAACAATTTTTGTGGAT+GGG - chr1_3:642443-642462 Msa0095490:intron 20.0%
!!! TAAAAAACAATTTTTGTGGA+TGG - chr1_3:642444-642463 Msa0095490:intron 20.0%
!!! TAATATAATTGAAGCACTAA+TGG + chr1_3:642538-642557 Msa0095500:intron 20.0%
!! CAATAACACATTTAAAGATA+AGG - chr1_3:642734-642753 Msa0095490:intron 20.0%
!!! ATAATGATGGAAACTTATTA+TGG - chr1_3:643036-643055 Msa0095490:intron 20.0%
!! TAATAAGTTTCCATCATTAT+AGG + chr1_3:643036-643055 Msa0095500:intron 20.0%
!! AATAATGCCTAGTAATTTAT+TGG + chr1_3:643162-643181 Msa0095500:intron 20.0%
!! TTTCTTTAATATGTTATGTG+TGG + chr1_3:643234-643253 Msa0095500:intron 20.0%
!!! TTTATATATCGATTATATGG+AGG - chr1_3:643535-643554 Msa0095490:intron 20.0%
!! GAAACTAAATGAATAATTTC+AGG - chr1_3:643627-643646 Msa0095490:intron 20.0%
!!! AAGTTTTTTTGGTGTATTAA+GGG + chr1_3:644285-644304 Msa0095500:intron 20.0%
!! CATCTTCATTATAATATGTT+TGG + chr1_3:644750-644769 Msa0095500:intron 20.0%
!! AGAAAAAGTCAAAACAATTA+AGG + chr1_3:644989-645008 Msa0095500:intron 20.0%
!!! AAGGTTTGTTTTTATTTTCT+AGG + chr1_3:645008-645027 Msa0095500:intron 20.0%
!!! CAAAAGTAAGTAATTTTTTG+TGG + chr1_3:645420-645439 Msa0095500:intron 20.0%
!! AATTAACCGGATAATATATA+AGG - chr1_3:645477-645496 Msa0095490:intron 20.0%
!! CCTTAAATAGATAAATTAAC+CGG - chr1_3:645490-645509 Msa0095490:intron 20.0%
!! CGGTTAATTTATCTATTTAA+GGG + chr1_3:645488-645507 Msa0095500:intron 20.0%
!!! ATTCTAATTTATCCTTTTTC+GGG - chr1_3:646390-646409 Msa0095490:intron 20.0%
!!! CTGATCAATTTATCTATTTT+AGG - chr1_3:646418-646437 Msa0095490:intron 20.0%
!!! CAAAAGTTAGTAATTTTTTG+TGG - chr1_3:646492-646511 Msa0095490:intron 20.0%
!! AATTCTTATGAACCATAAAA+AGG - chr1_3:645068-645087 Msa0095490:intron 20.0%
!! AGAAAAAGTCAAAACAATTA+TGG - chr1_3:644989-645008 Msa0095490:intron 20.0%
!! GATTAAAACTTTGCAATTAT+AGG + chr1_3:647129-647148 Msa0095500:intron 20.0%
!! TGATATATGACAACATATTA+TGG + chr1_3:647199-647218 Msa0095500:intron 20.0%
!!! TTGTTTTTGTCCAATAAAAA+GGG - chr1_3:647739-647758 None:intergenic 20.0%
!!! CTTTTTTTCTCTCTTTTAAT+TGG + chr1_3:647807-647826 Msa0095500:intron 20.0%
!!! TTTTAATTGGTCAAAAACAA+TGG + chr1_3:647820-647839 Msa0095500:intron 20.0%
!! GTCAAAAATTTATCACAAAA+TGG + chr1_3:647900-647919 Msa0095500:intron 20.0%
!!! TTGAATCTTTTGAAACTTAA+AGG - chr1_3:648224-648243 None:intergenic 20.0%
!! AAGTTTCAAAAGATTCAAAT+AGG + chr1_3:648226-648245 Msa0095500:intron 20.0%
!!! TTGAAACTTTTGAAACTTAA+AGG - chr1_3:648284-648303 None:intergenic 20.0%
!! TTCAAAAGTTTCAAACTAAA+AGG + chr1_3:648290-648309 Msa0095500:intron 20.0%
!!! TAAGAAATGCCTTTTATAAT+AGG + chr1_3:649452-649471 Msa0095500:intron 20.0%
!! ACTTTACAACCTATTATAAA+AGG - chr1_3:649464-649483 None:intergenic 20.0%
!! ACTCCATAATTCATATATAT+CGG + chr1_3:649842-649861 Msa0095500:intron 20.0%
!! ATGGAAAAAAAAAAAAAGGT+AGG - chr1_3:649993-650012 None:intergenic 20.0%
!! AGAAATTAAGATATGTTGAT+TGG - chr1_3:650138-650157 None:intergenic 20.0%
!!! AAAACATAATGGAAATGAAT+TGG - chr1_3:650220-650239 None:intergenic 20.0%
!! TATAAGATATTATCCTTCAA+CGG + chr1_3:650430-650449 Msa0095500:three_prime_UTR 20.0%
!! ATAAATCTATGGAATATTGA+AGG - chr1_3:641786-641805 Msa0095490:intron 20.0%
!!! TATTCCATAGATTTATTTCT+TGG + chr1_3:650614-650633 Msa0095500:three_prime_UTR 20.0%
!!! AACTTCTTTTTCTTTATCAA+AGG - chr1_3:641725-641744 Msa0095490:intron 20.0%
!!! GATTTTTTATTTGGATGTAA+TGG + chr1_3:641602-641621 Msa0095500:five_prime_UTR 20.0%
!!! AACTTCTTTTTCTTTATCAA+AGG + chr1_3:641725-641744 Msa0095500:five_prime_UTR 20.0%
!!! TATTCCATAGATTTATTTCT+TGG - chr1_3:650614-650633 None:intergenic 20.0%
!! ATAAATCTATGGAATATTGA+AGG + chr1_3:641786-641805 Msa0095500:five_prime_UTR 20.0%
!! TTTATTATAATGTCTTGCTT+TGG + chr1_3:641855-641874 Msa0095500:five_prime_UTR 20.0%
!! TATAAGATATTATCCTTCAA+AGG - chr1_3:650430-650449 None:intergenic 20.0%
!! ATACTTGCTCAAAAAAAAAA+AGG - chr1_3:642027-642046 Msa0095490:intron 20.0%
!! TATATCTTCATGTAAATAAC+TGG - chr1_3:642119-642138 Msa0095490:intron 20.0%
!! CATATAAAACTTGATGAAAA+TGG + chr1_3:642200-642219 Msa0095500:five_prime_UTR 20.0%
! ATTGAACAGCAATATTGTAT+TGG + chr1_3:641510-641529 Msa0095500:five_prime_UTR 25.0%
! TTGAACAGCAATATTGTATT+GGG + chr1_3:641511-641530 Msa0095500:five_prime_UTR 25.0%
! AATACCAAATAACAACTGAT+GGG - chr1_3:641561-641580 Msa0095490:intron 25.0%
! TAATACCAAATAACAACTGA+TGG - chr1_3:641562-641581 Msa0095490:intron 25.0%
! GTTGTTCAATAAAGAAACAA+AGG + chr1_3:641671-641690 Msa0095500:five_prime_UTR 25.0%
! AAAGGATAACAAATTCTTGT+TGG + chr1_3:641743-641762 Msa0095500:five_prime_UTR 25.0%
! TGAACCAAGAAATAAATCTA+TGG + chr1_3:641775-641794 Msa0095500:five_prime_UTR 25.0%
! GACATTATAATAAAGATAGC+AGG - chr1_3:641849-641868 Msa0095490:intron 25.0%
! AAGATATAATGAATTGAGCT+TGG + chr1_3:642131-642150 Msa0095500:five_prime_UTR 25.0%
! ATCAAAGTCAAAAATGTCAA+GGG + chr1_3:642224-642243 Msa0095500:five_prime_UTR 25.0%
! TCGATAAAGATATCTACATT+TGG - chr1_3:642496-642515 Msa0095490:intron 25.0%
! TGGCAAAATTAAATAAGAGA+AGG + chr1_3:642558-642577 Msa0095500:intron 25.0%
!! GATTAATTACCTTTGAAAGA+AGG - chr1_3:642662-642681 Msa0095490:intron 25.0%
! TTTAATATGTTATGTGTGGA+AGG + chr1_3:643238-643257 Msa0095500:intron 25.0%
! TTGATAGAAAATCTAGACAT+AGG - chr1_3:643597-643616 Msa0095490:intron 25.0%
!!! TGTTTTTGTGCAAGTTTTTT+TGG + chr1_3:644274-644293 Msa0095500:intron 25.0%
!!! CAAGTTTTTTTGGTGTATTA+AGG + chr1_3:644284-644303 Msa0095500:intron 25.0%
! TCATTTGGAAAACTAAGATT+TGG + chr1_3:644373-644392 Msa0095500:intron 25.0%
! TAGTCAATTTAATCCATAAC+TGG + chr1_3:644515-644534 Msa0095500:intron 25.0%
!! TCTTTTTATCTATCCAGTTA+TGG - chr1_3:644531-644550 Msa0095490:intron 25.0%
!! GAAACTTTCTTTTAAGCATA+TGG + chr1_3:644704-644723 Msa0095500:intron 25.0%
! TATGAACCATAAAACAGATA+TGG + chr1_3:645074-645093 Msa0095500:intron 25.0%
! TTTCCTCTATATCAATAGAT+GGG - chr1_3:645157-645176 Msa0095490:intron 25.0%
! ATAGTTATCCAATCAACATA+TGG - chr1_3:645182-645201 Msa0095490:intron 25.0%
! ATCCAATTCCATTATACTTA+GGG - chr1_3:645339-645358 Msa0095490:intron 25.0%
! TATCCAATTCCATTATACTT+AGG - chr1_3:645340-645359 Msa0095490:intron 25.0%
! CCGGTTAATTTATCTATTTA+AGG + chr1_3:645487-645506 Msa0095500:intron 25.0%
! CCAGTAAAAAATTATTGTCA+CGG + chr1_3:645602-645621 Msa0095500:intron 25.0%
! AATTGTACCATACAAACATT+TGG + chr1_3:645660-645679 Msa0095500:intron 25.0%
! AAAAGATGCATTTGAATCAT+TGG + chr1_3:645923-645942 Msa0095500:intron 25.0%
! TAAAGAGTTCTTACTGATAT+TGG + chr1_3:646065-646084 Msa0095500:intron 25.0%
! ATGATTATAGAGTAAAGTTC+AGG + chr1_3:646092-646111 Msa0095500:intron 25.0%
! AAAATTATTGTCACGGATAT+AGG - chr1_3:645609-645628 Msa0095490:intron 25.0%
! CCAGTAAAAAATTATTGTCA+CGG - chr1_3:645602-645621 Msa0095490:intron 25.0%
! ATAGTTATCTAATCAACAGA+TGG + chr1_3:646729-646748 Msa0095500:intron 25.0%
! ATCTTCCAAATAGTATTTGT+CGG + chr1_3:646803-646822 Msa0095500:intron 25.0%
! AATCTCAATGTCTTTCTTAA+TGG - chr1_3:647160-647179 None:intergenic 25.0%
! ATTTGTCTCCTTAAAATACA+AGG - chr1_3:647284-647303 None:intergenic 25.0%
! TCAAAAATTTAGTCTCTTCT+TGG + chr1_3:647304-647323 Msa0095500:intron 25.0%
!! AAAAAAGAGTGATAGTGATA+AGG - chr1_3:647609-647628 None:intergenic 25.0%
! ATTTAAAAGGTGAATTGTGA+TGG - chr1_3:647669-647688 None:intergenic 25.0%
!! TATTTTTCTCCCCTTTTTAT+TGG + chr1_3:647726-647745 Msa0095500:intron 25.0%
!!! TGTTTTTGTCCAATAAAAAG+GGG - chr1_3:647738-647757 None:intergenic 25.0%
!!! CTTGTTTTTGTCCAATAAAA+AGG - chr1_3:647740-647759 None:intergenic 25.0%
!!! TTTTTTCTCTCCATTGTTTT+CGG - chr1_3:647945-647964 None:intergenic 25.0%
! TTGAAACTTTCGAAACTTAA+AGG - chr1_3:648164-648183 None:intergenic 25.0%
! AAGTTTCGAAAGTTTCAATT+TGG + chr1_3:648166-648185 Msa0095500:intron 25.0%
! TATGTAGATTTCAAATACCA+AGG - chr1_3:648559-648578 None:intergenic 25.0%
!!! GTTTAGTGTTTTTTTTGCTT+AGG - chr1_3:648583-648602 None:intergenic 25.0%
!!! ATGCAATACAATTGATTTGT+TGG + chr1_3:648882-648901 Msa0095500:intron 25.0%
!!! TGCAATACAATTGATTTGTT+GGG + chr1_3:648883-648902 Msa0095500:intron 25.0%
!! GTTTTGTGTTTAAAAAGAAC+TGG + chr1_3:649264-649283 Msa0095500:intron 25.0%
! CAACTATTAAGAAAATTGAG+TGG + chr1_3:649315-649334 Msa0095500:intron 25.0%
!!! AGAATTTTTCAAGATACAGT+TGG + chr1_3:649575-649594 Msa0095500:intron 25.0%
!!! TCTTGATGTTATTTTTCTAG+AGG + chr1_3:649707-649726 Msa0095500:intron 25.0%
! AATGATAATTAGCTGCTTAT+TGG - chr1_3:649774-649793 None:intergenic 25.0%
! CTCCATAATTCATATATATC+GGG + chr1_3:649843-649862 Msa0095500:intron 25.0%
! GCGTATGGAAAAAAAAAAAA+AGG - chr1_3:649997-650016 None:intergenic 25.0%
! TAAATTCGATGTTTATATGC+AGG + chr1_3:650164-650183 Msa0095500:intron 25.0%
!!! TTTATTATAAGGTGTTGCTT+TGG - chr1_3:650539-650558 None:intergenic 25.0%
! TGAACCAAGAAATAAATCTA+TGG - chr1_3:641775-641794 Msa0095490:intron 25.0%
! AAAGGATAACAAATTCTTGT+TGG - chr1_3:641743-641762 Msa0095490:intron 25.0%
! ATTGAACAGCAATATTGTAT+TGG + chr1_3:641510-641529 Msa0095500:five_prime_UTR 25.0%
! TTGAACAGCAATATTGTATT+GGG + chr1_3:641511-641530 Msa0095500:five_prime_UTR 25.0%
! AATACCAAATAACAACTGAT+GGG - chr1_3:641561-641580 Msa0095490:intron 25.0%
! TAATACCAAATAACAACTGA+TGG - chr1_3:641562-641581 Msa0095490:intron 25.0%
! TTGAACAACAGTATTGTATT+TGG - chr1_3:650885-650904 None:intergenic 25.0%
! GTTGTTCAATAAAGAAACAA+AGG + chr1_3:641671-641690 Msa0095500:five_prime_UTR 25.0%
! AAAGGATAACAAATTCTTGT+TGG + chr1_3:641743-641762 Msa0095500:five_prime_UTR 25.0%
! TGAACCAAGAAATAAATCTA+TGG + chr1_3:641775-641794 Msa0095500:five_prime_UTR 25.0%
! AAGATATAATGAATTGAGCT+TGG + chr1_3:642131-642150 Msa0095500:five_prime_UTR 25.0%
! ATCAAAGTCAAAAATGTCAA+GGG + chr1_3:642224-642243 Msa0095500:five_prime_UTR 25.0%
GCTGTTCAATAAAGAAACAA+AGG - chr1_3:641500-641519 Msa0095490:intron 30.0%
ATACCAAATAACAACTGATG+GGG - chr1_3:641560-641579 Msa0095490:intron 30.0%
!! TATTTGGATGTAATGGATGA+TGG + chr1_3:641609-641628 Msa0095500:five_prime_UTR 30.0%
!! ATTTGGATGTAATGGATGAT+GGG + chr1_3:641610-641629 Msa0095500:five_prime_UTR 30.0%
ATTATAATGTCTTGCTTTGG+TGG + chr1_3:641858-641877 Msa0095500:five_prime_UTR 30.0%
AAAGTGAGGATTCATAAGTA+TGG + chr1_3:641907-641926 Msa0095500:five_prime_UTR 30.0%
ATTCACTTTGATTGTCACTA+TGG + chr1_3:642158-642177 Msa0095500:five_prime_UTR 30.0%
CATCAAAGTCAAAAATGTCA+AGG + chr1_3:642223-642242 Msa0095500:five_prime_UTR 30.0%
GTAATTGATAGATATGCTCT+TGG + chr1_3:642580-642599 Msa0095500:intron 30.0%
CAGAGTTCAATCGTAATTAA+TGG - chr1_3:642618-642637 Msa0095490:intron 30.0%
! TGTGTTATTGAATTGTGTAG+TGG + chr1_3:642744-642763 Msa0095500:intron 30.0%
AAAAGATGTCCAATGTCAAA+TGG + chr1_3:642769-642788 Msa0095500:intron 30.0%
ATATTCAGACCATTTGACAT+TGG - chr1_3:642781-642800 Msa0095490:intron 30.0%
TCTGAATATGTTGAAGTGAA+AGG + chr1_3:642792-642811 Msa0095500:CDS 30.0%
CTGAATATGTTGAAGTGAAA+GGG + chr1_3:642793-642812 Msa0095500:CDS 30.0%
ACTATCTCCTTTGTTAATAG+GGG - chr1_3:642914-642933 Msa0095490:intron 30.0%
CACTATCTCCTTTGTTAATA+GGG - chr1_3:642915-642934 Msa0095490:intron 30.0%
!!! AAAGGAGATAGTGGAATTTT+AGG + chr1_3:642922-642941 Msa0095500:intron 30.0%
AGTTTCCATCATTATAGGAA+TGG + chr1_3:643041-643060 Msa0095500:intron 30.0%
CTAGTGACCAATAAATTACT+AGG - chr1_3:643172-643191 Msa0095490:intron 30.0%
ACCAATTTGAATTACCATAG+AGG + chr1_3:643345-643364 Msa0095500:intron 30.0%
TCCTCTATGGTAATTCAAAT+TGG - chr1_3:643349-643368 Msa0095490:intron 30.0%
AGAATCAATTTCATCCTCTA+TGG - chr1_3:643362-643381 Msa0095490:intron 30.0%
! TAGAGGATGAAATTGATTCT+AGG + chr1_3:643362-643381 Msa0095500:intron 30.0%
GACAAGAGTAACATTAAGTT+GGG - chr1_3:643669-643688 Msa0095490:intron 30.0%
ACAGATCTGAATTTCTTAGT+GGG - chr1_3:643998-644017 Msa0095490:intron 30.0%
TACAGATCTGAATTTCTTAG+TGG - chr1_3:643999-644018 Msa0095490:intron 30.0%
CAAGAGATCTATTTAACATG+AGG - chr1_3:644101-644120 Msa0095490:intron 30.0%
GTTAAATAGATCTCTTGCTT+TGG + chr1_3:644104-644123 Msa0095500:intron 30.0%
!! ATCTACTCAAAAGCTGATTT+TGG + chr1_3:644148-644167 Msa0095500:intron 30.0%
!! TAAAGCTTACCACTTTTGTT+TGG - chr1_3:644224-644243 Msa0095490:intron 30.0%
AACAAAAGTGGTAAGCTTTA+TGG + chr1_3:644224-644243 Msa0095500:intron 30.0%
!!! CTATTTTAACTTTGACAGCT+TGG - chr1_3:644314-644333 Msa0095490:intron 30.0%
! AAGTTGATTACAACACCATA+AGG - chr1_3:644405-644424 Msa0095490:intron 30.0%
GAAAACCATAGATTGACTAA+AGG - chr1_3:644653-644672 Msa0095490:intron 30.0%
! TGAAAAAGCAGCTTTTAGAT+AGG - chr1_3:644732-644751 Msa0095490:intron 30.0%
TATGGTTCATAAGAATTCCA+AGG - chr1_3:646847-646866 Msa0095510:CDS 30.0%
! ACAGTACCATATCTGTTTTA+TGG - chr1_3:645083-645102 Msa0095490:intron 30.0%
TGTTTACGACAAATTCTGTT+TGG + chr1_3:645100-645119 Msa0095500:intron 30.0%
GTTTCCTCTATATCAATAGA+TGG - chr1_3:645158-645177 Msa0095490:intron 30.0%
CTTAACTATAGATGGATGTA+TGG - chr1_3:645210-645229 Msa0095490:intron 30.0%
TGCATCATGAAGCAAATATA+TGG + chr1_3:645234-645253 Msa0095500:intron 30.0%
! AGCAAATATATGGACTGAAA+AGG + chr1_3:645244-645263 Msa0095500:intron 30.0%
! GCAAATATATGGACTGAAAA+GGG + chr1_3:645245-645264 Msa0095500:intron 30.0%
!! TTGATTTGTACTCCTCATAT+TGG + chr1_3:645299-645318 Msa0095500:intron 30.0%
CTGTTGCCTTATATATTATC+CGG + chr1_3:645468-645487 Msa0095500:intron 30.0%
!!! CCGTGACAATAATTTTTTAC+TGG - chr1_3:646300-646319 Msa0095490:CDS 30.0%
ATGTACACCAAATGTTTGTA+TGG - chr1_3:645670-645689 Msa0095490:intron 30.0%
TTTACGAGGTAACTTAACAA+AGG - chr1_3:645794-645813 Msa0095490:intron 30.0%
ATTATAGAGCAAAGTTTACG+AGG - chr1_3:645808-645827 Msa0095490:intron 30.0%
! TAAAGAGTTCTGACTGATAT+TGG - chr1_3:645838-645857 Msa0095490:intron 30.0%
ATTATAGAGTAAAGTTCAGG+AGG + chr1_3:646095-646114 Msa0095500:intron 30.0%
CATCTGAAAAAGAAAAACAC+AGG + chr1_3:646142-646161 Msa0095500:intron 30.0%
AATTGTACCACACAAACATT+TGG - chr1_3:646245-646264 Msa0095490:intron 30.0%
!!! CCGTGACAATAATTTTTTAC+TGG + chr1_3:646300-646319 Msa0095500:intron 30.0%
ATCCAATTCCATTATACCAA+TGG + chr1_3:646572-646591 Msa0095500:intron 30.0%
! GCAAATATATGGACTGAAAA+GGG - chr1_3:645245-645264 Msa0095490:intron 30.0%
! AGCAAATATATGGACTGAAA+AGG - chr1_3:645244-645263 Msa0095490:intron 30.0%
CGCAAATACTTATCTATAGA+TGG + chr1_3:646693-646712 Msa0095500:intron 30.0%
CTTATCTATAGATGGATGTA+TGG + chr1_3:646701-646720 Msa0095500:intron 30.0%
TGTTTCCGACAAATACTATT+TGG - chr1_3:646811-646830 Msa0095510:CDS 30.0%
! CAGTTTGCATATCCTTTTTA+TGG + chr1_3:646829-646848 Msa0095500:intron 30.0%
TATGGTTCATAAGAATTCCA+AGG + chr1_3:646847-646866 Msa0095500:intron 30.0%
!!! ATGGTTTGTTTTCATTTTCC+AGG - chr1_3:646904-646923 Msa0095510:intron 30.0%
AGAATCCATTAATCTCTTGT+CGG - chr1_3:647013-647032 Msa0095510:CDS 30.0%
AAATTTGACATGTGTTTCGA+TGG - chr1_3:647066-647085 None:intergenic 30.0%
AATCAAGTATGTCTCTTTAC+TGG - chr1_3:647113-647132 None:intergenic 30.0%
! GACAACATATTATGGTGTTA+AGG + chr1_3:647207-647226 Msa0095500:intron 30.0%
! TGTTTTTCTCCAGTTTTCTA+CGG + chr1_3:647394-647413 Msa0095500:intron 30.0%
ATGAGCAATAAAGTTAGTTG+AGG + chr1_3:647499-647518 Msa0095500:intron 30.0%
TGAGCAATAAAGTTAGTTGA+GGG + chr1_3:647500-647519 Msa0095500:intron 30.0%
TAAGGCAATACTTGTAGATT+AGG - chr1_3:647591-647610 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr1_3:647833-647852 Msa0095500:intron 30.0%
AAAAAGGAAGAGAGAGAATA+AGG + chr1_3:647849-647868 Msa0095500:intron 30.0%
AAAAGGAAGAGAGAGAATAA+GGG + chr1_3:647850-647869 Msa0095500:intron 30.0%
TATCATTTCTCCGAAAACAA+TGG + chr1_3:647932-647951 Msa0095500:intron 30.0%
! ACACTATATGCATAGAGTTT+TGG + chr1_3:648086-648105 Msa0095500:intron 30.0%
AAAGGACCAAAAATGGTATT+TGG - chr1_3:648115-648134 None:intergenic 30.0%
CAAACTAAAAGGACCAAAAA+TGG - chr1_3:648122-648141 None:intergenic 30.0%
GAGAATTCTGTCAAACTAAA+AGG - chr1_3:648133-648152 None:intergenic 30.0%
GAAACTTAAAGGACTAACTT+GGG - chr1_3:648153-648172 None:intergenic 30.0%
TGAAACTTAAAGGACTAACT+TGG - chr1_3:648214-648233 None:intergenic 30.0%
GAAACTTAAAGGACTAACTT+GGG - chr1_3:648153-648172 None:intergenic 30.0%
TGAAACTTAAAGGACTAACT+TGG - chr1_3:648214-648233 None:intergenic 30.0%
CTTCATTCATTTCTACTGAT+GGG - chr1_3:648623-648642 None:intergenic 30.0%
TCTTCATTCATTTCTACTGA+TGG - chr1_3:648624-648643 None:intergenic 30.0%
TGCATAGATGATCAAATCTT+TGG - chr1_3:648867-648886 None:intergenic 30.0%
CATCAAGATAAGTGAAGAAA+TGG - chr1_3:648953-648972 None:intergenic 30.0%
TTTGTCCAATGGGTAAAAAT+AGG - chr1_3:648977-648996 None:intergenic 30.0%
! AGGAAGTGTATCTGAAAAAT+AGG - chr1_3:649634-649653 None:intergenic 30.0%
CACCCGATATATATGAATTA+TGG - chr1_3:649848-649867 None:intergenic 30.0%
TCCATGATCACTTGTTTAAA+AGG + chr1_3:650034-650053 Msa0095500:intron 30.0%
TAATAATTCATCACACTCCA+TGG + chr1_3:650246-650265 Msa0095500:three_prime_UTR 30.0%
ATTCACTTTGATTGTTACCA+TGG - chr1_3:650266-650285 None:intergenic 30.0%
GCTGTTCAATAAAGAAACAA+AGG - chr1_3:641500-641519 Msa0095490:intron 30.0%
ATACCAAATAACAACTGATG+GGG - chr1_3:641560-641579 Msa0095490:intron 30.0%
!! TATTTGGATGTAATGGATGA+TGG + chr1_3:641609-641628 Msa0095500:five_prime_UTR 30.0%
!! ATTTGGATGTAATGGATGAT+GGG + chr1_3:641610-641629 Msa0095500:five_prime_UTR 30.0%
GACATTATAATAAAGCTAGC+AGG - chr1_3:651074-651093 None:intergenic 30.0%
ATTATAATGTCTTGCTTTGG+TGG + chr1_3:641858-641877 Msa0095500:five_prime_UTR 30.0%
AAAGTGAGGATTCATAAGTA+TGG + chr1_3:641907-641926 Msa0095500:five_prime_UTR 30.0%
ATTCACTTTGATTGTCACTA+TGG + chr1_3:642158-642177 Msa0095500:five_prime_UTR 30.0%
CATCAAAGTCAAAAATGTCA+AGG + chr1_3:642223-642242 Msa0095500:five_prime_UTR 30.0%
!! TTTGGATGTAATGGATGATG+GGG + chr1_3:641611-641630 Msa0095500:five_prime_UTR 35.0%
TTTCATTGCTAGTGAAAGTG+AGG + chr1_3:641893-641912 Msa0095500:five_prime_UTR 35.0%
GAATGAACACAATCCTTTGA+AGG + chr1_3:641948-641967 Msa0095500:five_prime_UTR 35.0%
CCATTTCACGGAATCTAATT+TGG - chr1_3:642253-642272 Msa0095490:intron 35.0%
CCAAATTAGATTCCGTGAAA+TGG + chr1_3:642250-642269 Msa0095500:exon 35.0%
!! TTTTGAAGGTAGCCATTTCA+CGG - chr1_3:642265-642284 Msa0095490:intron 35.0%
GTGCATGATCATAGTATACT+TGG - chr1_3:642403-642422 Msa0095490:intron 35.0%
! TATCGAGTTTGAAGCACTAA+TGG + chr1_3:642510-642529 Msa0095500:intron 35.0%
GGCAATTGTAGAAACAGTTA+GGG - chr1_3:642641-642660 Msa0095490:intron 35.0%
AGGCAATTGTAGAAACAGTT+AGG - chr1_3:642642-642661 Msa0095490:intron 35.0%
CTACAATTGCCTTCTTTCAA+AGG + chr1_3:642650-642669 Msa0095500:CDS 35.0%
!! CGGTTGATGGTAAGAAAAAT+AGG + chr1_3:642876-642895 Msa0095500:intron 35.0%
CCACTATCTCCTTTGTTAAT+AGG - chr1_3:642916-642935 Msa0095490:intron 35.0%
CCTATTAACAAAGGAGATAG+TGG + chr1_3:642913-642932 Msa0095500:intron 35.0%
GCTATTGAAGTCCTGATTAT+TGG + chr1_3:643067-643086 Msa0095500:intron 35.0%
TATATCAGGGTCCAATAATC+AGG - chr1_3:643081-643100 Msa0095490:intron 35.0%
CAGCATGAGTTTATCAACTA+CGG + chr1_3:643130-643149 Msa0095500:intron 35.0%
AGATCCTTCTTTCCAATACA+GGG - chr1_3:643394-643413 Msa0095490:intron 35.0%
AAGATCCTTCTTTCCAATAC+AGG - chr1_3:643395-643414 Msa0095490:intron 35.0%
AAAGAAGGATCTTCAAGACT+TGG + chr1_3:643402-643421 Msa0095500:intron 35.0%
! TATCGATTATATGGAGGACT+AGG - chr1_3:643529-643548 Msa0095490:intron 35.0%
GGACAAGAGTAACATTAAGT+TGG - chr1_3:643670-643689 Msa0095490:intron 35.0%
TCTCTCTCTAACTTTCTATC+AGG - chr1_3:643691-643710 Msa0095490:intron 35.0%
TGATAGAAAGTTAGAGAGAG+AGG + chr1_3:643690-643709 Msa0095500:intron 35.0%
GTATCTGAACCATTACTCTA+AGG + chr1_3:644016-644035 Msa0095500:intron 35.0%
ATCTATTTAACATGAGGTGG+CGG - chr1_3:644095-644114 Msa0095490:intron 35.0%
GAGATCTATTTAACATGAGG+TGG - chr1_3:644098-644117 Msa0095490:intron 35.0%
!! ATCAGCTTTTGAGTAGATGA+TGG - chr1_3:644146-644165 Msa0095490:intron 35.0%
! GCTTTATGGTTTTTCTCTAC+CGG + chr1_3:644238-644257 Msa0095500:intron 35.0%
ATAGCACACTACATGTTTGT+TGG + chr1_3:644330-644349 Msa0095500:intron 35.0%
TGGAAAACTAAGATTTGGCA+AGG + chr1_3:644378-644397 Msa0095500:intron 35.0%
CTGGATAGATAAAAAGACTG+TGG + chr1_3:644534-644553 Msa0095500:intron 35.0%
ATATCTCAATGCAGAGAGTT+AGG + chr1_3:644595-644614 Msa0095500:intron 35.0%
!!! GAGAGTTAGGTTTTAGATGT+TGG + chr1_3:644608-644627 Msa0095500:intron 35.0%
!!! GGTTTTAGATGTTGGTTTAG+TGG + chr1_3:644616-644635 Msa0095500:intron 35.0%
!! GTTAGCCTTTAGTCAATCTA+TGG + chr1_3:644645-644664 Msa0095500:intron 35.0%
TTTCGTTGATCATGTGTTTG+TGG + chr1_3:644669-644688 Msa0095500:intron 35.0%
TTCGTTGATCATGTGTTTGT+GGG + chr1_3:644670-644689 Msa0095500:intron 35.0%
CATGTGTTTGTGGGATTTAA+TGG + chr1_3:644679-644698 Msa0095500:intron 35.0%
ATTGCATGCATTCAGTTTCT+AGG - chr1_3:644831-644850 Msa0095490:intron 35.0%
TTTGACATGTGTTTCGATAG+AGG + chr1_3:644850-644869 Msa0095500:intron 35.0%
ATGATCCATTAATCTCTCGT+CGG + chr1_3:644900-644919 Msa0095500:intron 35.0%
AGATTCCAAGTTAATGTCCT+TGG + chr1_3:645045-645064 Msa0095500:intron 35.0%
GAATTCCAAGGACATTAACT+TGG - chr1_3:646859-646878 Msa0095510:CDS 35.0%
AGGAAACACCATATGTTGAT+TGG + chr1_3:645171-645190 Msa0095500:intron 35.0%
TGCAGACACTTAACTATAGA+TGG - chr1_3:645218-645237 Msa0095490:intron 35.0%
AAGCACTTCACAATATGCAA+GGG - chr1_3:646631-646650 Msa0095490:five_prime_UTR 35.0%
! AAAGCACTTCACAATATGCA+AGG - chr1_3:646630-646649 Msa0095490:five_prime_UTR 35.0%
CATTATACTTAGGGTGATGT+AGG - chr1_3:645330-645349 Msa0095490:intron 35.0%
CTACATCACCCTAAGTATAA+TGG + chr1_3:645328-645347 Msa0095500:intron 35.0%
! CACCCTAAGTATAATGGAAT+TGG + chr1_3:645334-645353 Msa0095500:intron 35.0%
ATTGGATAGAAATTCACCTC+TGG + chr1_3:645352-645371 Msa0095500:intron 35.0%
!! ACCACATACAAGAAGTACTT+TGG + chr1_3:645396-645415 Msa0095500:intron 35.0%
! TCCAAAGTACTTCTTGTATG+TGG - chr1_3:646512-646531 Msa0095490:CDS 35.0%
! TATAAGGCAACAGAGTTGAT+AGG - chr1_3:645461-645480 Msa0095490:intron 35.0%
AAACATGTCTTGCCTTAAGT+AGG - chr1_3:645580-645599 Msa0095490:intron 35.0%
TTATTGTCACGGATATAAGC+AGG + chr1_3:645613-645632 Msa0095500:intron 35.0%
AATGATTGAATACCGTTCTG+CGG - chr1_3:645949-645968 Msa0095490:intron 35.0%
GCATTTGAATCAAATGCAGA+GGG - chr1_3:645973-645992 Msa0095490:intron 35.0%
TGCATTTGAATCAAATGCAG+AGG - chr1_3:645974-645993 Msa0095490:intron 35.0%
!! ATTTGGTGTTCATAAAAGCG+CGG - chr1_3:646228-646247 Msa0095490:intron 35.0%
ATGAACACCAAATGTTTGTG+TGG + chr1_3:646235-646254 Msa0095500:intron 35.0%
TATAGGCAAGTGAAAGATAG+AGG - chr1_3:646279-646298 Msa0095490:CDS 35.0%
! TAATGTCTGAAACCCGAAAA+AGG + chr1_3:646375-646394 Msa0095500:intron 35.0%
! TCCAAAGTACTTCTTGTATG+TGG + chr1_3:646512-646531 Msa0095500:intron 35.0%
!! ACCACATACAAGAAGTACTT+TGG - chr1_3:645396-645415 Msa0095490:intron 35.0%
ATTGGATAGAAATTCACCTC+TGG - chr1_3:645352-645371 Msa0095490:intron 35.0%
! CACCATTGGTATAATGGAAT+TGG - chr1_3:646577-646596 Msa0095490:exon 35.0%
CTACATCACCATTGGTATAA+TGG - chr1_3:646583-646602 Msa0095490:exon 35.0%
! CATTATACCAATGGTGATGT+AGG + chr1_3:646581-646600 Msa0095500:intron 35.0%
!! TTGATTTGTACTCCTCGTAA+TGG - chr1_3:646612-646631 Msa0095490:five_prime_UTR 35.0%
! AAAGCACTTCACAATATGCA+AGG + chr1_3:646630-646649 Msa0095500:intron 35.0%
AAGCACTTCACAATATGCAA+GGG + chr1_3:646631-646650 Msa0095500:intron 35.0%
TGCGTCATGAAGCAAATATA+TGG - chr1_3:646677-646696 None:intergenic 35.0%
GTTTCCTCTATAGCAATAGA+TGG + chr1_3:646753-646772 Msa0095500:intron 35.0%
GAATTCCAAGGACATTAACT+TGG + chr1_3:646859-646878 Msa0095500:intron 35.0%
AGATTCCAAGTTAATGTCCT+TGG - chr1_3:645045-645064 Msa0095490:intron 35.0%
! ATCTTTTGCACAAAAGAACC+TGG + chr1_3:646883-646902 Msa0095500:intron 35.0%
! TGCCACATCCTTGTATTTTA+AGG + chr1_3:647273-647292 Msa0095500:intron 35.0%
CTCCTTAAAATACAAGGATG+TGG - chr1_3:647278-647297 None:intergenic 35.0%
ATGAAAGATTAGCATGACAC+AGG + chr1_3:647352-647371 Msa0095500:intron 35.0%
TGAAAGATTAGCATGACACA+GGG + chr1_3:647353-647372 Msa0095500:intron 35.0%
AAAACTGGAGAAAAACACAC+AGG - chr1_3:647391-647410 None:intergenic 35.0%
AACATTTCGTCCTTGATGTA+GGG + chr1_3:647630-647649 Msa0095500:intron 35.0%
TAAAAGGTGAATTGTGATGG+AGG - chr1_3:647666-647685 None:intergenic 35.0%
ATATGTGAGTATGAGTGAGA+TGG + chr1_3:647986-648005 Msa0095500:intron 35.0%
!! CTATATGCATAGAGTTTTGG+CGG + chr1_3:648089-648108 Msa0095500:intron 35.0%
GGGAATTCTGTCAAACTAAA+AGG - chr1_3:648193-648212 None:intergenic 35.0%
GGGAATTCTGTCAAACTAAA+AGG - chr1_3:648193-648212 None:intergenic 35.0%
! TGAGAAAAAAGTGTGAAAGC+AGG + chr1_3:648484-648503 Msa0095500:intron 35.0%
! GAGAAAAAAGTGTGAAAGCA+GGG + chr1_3:648485-648504 Msa0095500:intron 35.0%
! AGAAAAAAGTGTGAAAGCAG+GGG + chr1_3:648486-648505 Msa0095500:intron 35.0%
ACGATAAGTATTCACTACCT+TGG + chr1_3:648539-648558 Msa0095500:intron 35.0%
GTACACTATTGTTGCTGAAA+TGG - chr1_3:648649-648668 None:intergenic 35.0%
TCTCATCTCATGTCATAATC+CGG + chr1_3:648684-648703 Msa0095500:intron 35.0%
TTATATTACCTTCTCAGACC+CGG - chr1_3:648706-648725 None:intergenic 35.0%
ATCTTTGGTATGTGAGGAAA+TGG - chr1_3:648852-648871 None:intergenic 35.0%
GATCAAATCTTTGGTATGTG+AGG - chr1_3:648858-648877 None:intergenic 35.0%
!!! GATGTCCTATTTTTACCCAT+TGG + chr1_3:648969-648988 Msa0095500:intron 35.0%
CTTAATAGTTGTAGAGTTGC+TGG - chr1_3:649306-649325 None:intergenic 35.0%
AACAAATTGTTTAGCGTGTG+TGG + chr1_3:649498-649517 Msa0095500:intron 35.0%
AGATACACTTCCTTGAATTG+TGG + chr1_3:649641-649660 Msa0095500:intron 35.0%
TAATCTCTGACAATTGCGTA+TGG - chr1_3:650012-650031 None:intergenic 35.0%
! GCCTTTTAAACAAGTGATCA+TGG - chr1_3:650038-650057 None:intergenic 35.0%
GGCTTATATCTCTTACAACT+TGG + chr1_3:650055-650074 Msa0095500:intron 35.0%
AAGAGATAACGAATTGAGCT+TGG - chr1_3:650293-650312 None:intergenic 35.0%
!! ATTATAAGGTGTTGCTTTGG+AGG - chr1_3:650536-650555 None:intergenic 35.0%
! CTGGTGCTAGGTTTATTATA+AGG - chr1_3:650550-650569 None:intergenic 35.0%
!! TTTGGATGTAATGGATGATG+GGG + chr1_3:641611-641630 Msa0095500:five_prime_UTR 35.0%
TTTCATTGCTAGTGAAAGTG+AGG + chr1_3:641893-641912 Msa0095500:five_prime_UTR 35.0%
GAATGAACACAATCCTTTGA+AGG + chr1_3:641948-641967 Msa0095500:five_prime_UTR 35.0%
CCATTTCACGGAATCTAATT+TGG - chr1_3:642253-642272 Msa0095490:intron 35.0%
CCAAATTAGATTCCGTGAAA+TGG + chr1_3:642250-642269 Msa0095500:exon 35.0%
!! TTTTGAAGGTAGCCATTTCA+CGG - chr1_3:642265-642284 Msa0095490:intron 35.0%
! CTTCCCCATCAGTTGTTATT+TGG + chr1_3:641554-641573 Msa0095500:five_prime_UTR 40.0%
TTGGCAAGTACAATGGTCAT+AGG + chr1_3:641823-641842 Msa0095500:five_prime_UTR 40.0%
TACCTTCAAAAGTTGCGCAA+AGG + chr1_3:642274-642293 Msa0095500:CDS 40.0%
! GATCGCGACATAACTGTTTT+TGG + chr1_3:642359-642378 Msa0095500:CDS 40.0%
TCTCCTTTGTTAATAGGGGT+GGG - chr1_3:642910-642929 Msa0095490:intron 40.0%
ATCTCCTTTGTTAATAGGGG+TGG - chr1_3:642911-642930 Msa0095490:intron 40.0%
GCATGCCATTCCTATAATGA+TGG - chr1_3:643049-643068 Msa0095490:intron 40.0%
!! CGTAGTTGATAAACTCATGC+TGG - chr1_3:643132-643151 Msa0095490:intron 40.0%
AGGATCTTCAAGACTTGGAT+TGG + chr1_3:643407-643426 Msa0095500:intron 40.0%
! TCTTCAAGACTTGGATTGGA+AGG + chr1_3:643411-643430 Msa0095500:intron 40.0%
! TGGATTGGAAGGCATAGAAA+AGG + chr1_3:643422-643441 Msa0095500:intron 40.0%
TAAGGGAAAACCTAGAGAGA+AGG - chr1_3:643721-643740 Msa0095490:intron 40.0%
AAGTGAACCTTCTGAGTAGA+GGG - chr1_3:643823-643842 Msa0095490:intron 40.0%
TAGCCAAATCGAAATCTGGA+TGG - chr1_3:643875-643894 Msa0095490:intron 40.0%
CCATTGATGTTGTTGACGAA+GGG - chr1_3:643950-643969 Msa0095490:intron 40.0%
CCTTCGTCAACAACATCAAT+GGG + chr1_3:643948-643967 Msa0095500:intron 40.0%
!! AGCTTACCACTTTTGTTTGG+CGG - chr1_3:644221-644240 Msa0095490:intron 40.0%
!! ATGGTTTTTCTCTACCGGTT+AGG + chr1_3:644243-644262 Msa0095500:intron 40.0%
AAAACAGAGAGAGTCCTAAC+CGG - chr1_3:644260-644279 Msa0095490:intron 40.0%
TTGGAATGCCACTACAAAGA+TGG + chr1_3:644349-644368 Msa0095500:intron 40.0%
TGGAATGCCACTACAAAGAT+GGG + chr1_3:644350-644369 Msa0095500:intron 40.0%
CAAATGACCCATCTTTGTAG+TGG - chr1_3:644360-644379 Msa0095490:intron 40.0%
CACTACAAAGATGGGTCATT+TGG + chr1_3:644358-644377 Msa0095500:intron 40.0%
AAGATTTGGCAAGGTCCTTA+TGG + chr1_3:644387-644406 Msa0095500:intron 40.0%
! TCTGCAACCTCTTCATGTTT+TGG + chr1_3:644424-644443 Msa0095500:intron 40.0%
AAGACAGCCAAAACATGAAG+AGG - chr1_3:644434-644453 Msa0095490:intron 40.0%
AAGCACGTTTCGACTATAAG+TGG - chr1_3:644488-644507 Msa0095490:intron 40.0%
TTCTCTTCTCTTCGTTGTCA+TGG + chr1_3:644558-644577 Msa0095500:intron 40.0%
GCTCCCATCTATTGATATAG+AGG + chr1_3:645151-645170 Msa0095500:intron 40.0%
ATGTAGGTACGTCCAATATG+AGG - chr1_3:645314-645333 Msa0095490:intron 40.0%
! AGAAATTCACCTCTGGAAGT+AGG + chr1_3:645359-645378 Msa0095500:intron 40.0%
! GAAATTCACCTCTGGAAGTA+GGG + chr1_3:645360-645379 Msa0095500:intron 40.0%
! AAATTCACCTCTGGAAGTAG+GGG + chr1_3:645361-645380 Msa0095500:intron 40.0%
! TGAATGCCATGTCTGAAACT+CGG - chr1_3:645536-645555 Msa0095490:intron 40.0%
TGAGCATCAATGCCTACTTA+AGG + chr1_3:645565-645584 Msa0095500:intron 40.0%
TCAAGTCTATGCATGATCGA+TGG - chr1_3:646026-646045 Msa0095490:intron 40.0%
TCAAGTCTATGCATGATCGA+TGG + chr1_3:646026-646045 Msa0095500:intron 40.0%
TCAGGAGGTAACTCAAACAA+AGG + chr1_3:646110-646129 Msa0095500:intron 40.0%
AAACGTGTCTTGCCTTAAGT+AGG + chr1_3:646325-646344 Msa0095500:intron 40.0%
TGAGCATCAATGCCTACTTA+AGG - chr1_3:645565-645584 Msa0095490:intron 40.0%
! AAATTCACCTCTGGAAGTAG+AGG - chr1_3:645361-645380 Msa0095490:intron 40.0%
CATTAATCTCTTGTCGGATC+AGG - chr1_3:647007-647026 Msa0095510:CDS 40.0%
CTGATCCGACAAGAGATTAA+TGG + chr1_3:647005-647024 Msa0095500:intron 40.0%
TTTGACATGTGTTTCGATGG+AGG - chr1_3:647063-647082 None:intergenic 40.0%
GATTCTACACCGTAGAAAAC+TGG - chr1_3:647406-647425 None:intergenic 40.0%
CAACATTTCGTCCTTGATGT+AGG + chr1_3:647629-647648 Msa0095500:intron 40.0%
CTCATCTCATGTCATAATCC+GGG + chr1_3:648685-648704 Msa0095500:intron 40.0%
CTCAAAACTGATACGTACAC+AGG - chr1_3:648810-648829 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr1_3:649654-649673 None:intergenic 40.0%
TCTTCGTTGCAAAGTTTGTG+AGG + chr1_3:649944-649963 Msa0095500:intron 40.0%
GTTAAGTGGTAGAGCATATG+TGG - chr1_3:650102-650121 None:intergenic 40.0%
TAGTGGAAGTGAGGATTCAT+AGG - chr1_3:650492-650511 None:intergenic 40.0%
TTTCATTGCTAGTGGAAGTG+AGG - chr1_3:650501-650520 None:intergenic 40.0%
TTGGCAAGTACAAAGGTCAT+AGG - chr1_3:650573-650592 None:intergenic 40.0%
AAGTTCGTTGGCAAGTACAA+AGG - chr1_3:650580-650599 None:intergenic 40.0%
TTGTACTTGCCAACGAACTT+AGG + chr1_3:650580-650599 Msa0095500:three_prime_UTR 40.0%
! CTTCCCCATCAGTTGTTATT+TGG + chr1_3:641554-641573 Msa0095500:five_prime_UTR 40.0%
TAATAAAGCTAGCAGGCCTA+TGG - chr1_3:651067-651086 None:intergenic 40.0%
TACCTTCAAAAGTTGCGCAA+AGG + chr1_3:642274-642293 Msa0095500:CDS 40.0%
GATGGGGAAGAGATTCTAAC+TGG + chr1_3:641627-641646 Msa0095500:five_prime_UTR 45.0%
TTGTACTTGCCAACGAGCTT+AGG - chr1_3:641816-641835 Msa0095490:intron 45.0%
AAGCTCGTTGGCAAGTACAA+TGG + chr1_3:641816-641835 Msa0095500:five_prime_UTR 45.0%
! CTCCTTTGCGCAACTTTTGA+AGG - chr1_3:642279-642298 Msa0095490:intron 45.0%
CTTCAAAAGTTGCGCAAAGG+AGG + chr1_3:642277-642296 Msa0095500:CDS 45.0%
TTCCTCGCTCATGCAAGAAA+CGG + chr1_3:642856-642875 Msa0095500:CDS 45.0%
CTCATGCAAGAAACGGTTGA+TGG + chr1_3:642863-642882 Msa0095500:CDS 45.0%
GTTCCCACCCCTATTAACAA+AGG + chr1_3:642904-642923 Msa0095500:intron 45.0%
TCTAGGTAGTCTCCCTGTAT+TGG + chr1_3:643379-643398 Msa0095500:intron 45.0%
GTCTCCCTGTATTGGAAAGA+AGG + chr1_3:643387-643406 Msa0095500:intron 45.0%
AGGTCTCCAATGATATGGAG+GGG - chr1_3:643756-643775 Msa0095490:intron 45.0%
GAGGTCTCCAATGATATGGA+GGG - chr1_3:643757-643776 Msa0095490:intron 45.0%
AGTGAACCTTCTGAGTAGAG+GGG - chr1_3:643822-643841 Msa0095490:intron 45.0%
GAAGTGAACCTTCTGAGTAG+AGG - chr1_3:643824-643843 Msa0095490:intron 45.0%
! ATCGAAATCTGGATGGTGGT+GGG - chr1_3:643868-643887 Msa0095490:intron 45.0%
! AATCGAAATCTGGATGGTGG+TGG - chr1_3:643869-643888 Msa0095490:intron 45.0%
CCAAATCGAAATCTGGATGG+TGG - chr1_3:643872-643891 Msa0095490:intron 45.0%
CCACCATCCAGATTTCGATT+TGG + chr1_3:643869-643888 Msa0095500:intron 45.0%
GTGGTAGCCAAATCGAAATC+TGG - chr1_3:643879-643898 Msa0095490:intron 45.0%
ATGTTGTTGACGAAGGGATC+TGG - chr1_3:643944-643963 Msa0095490:intron 45.0%
CCCTTCGTCAACAACATCAA+TGG + chr1_3:643947-643966 Msa0095500:intron 45.0%
CCCATTGATGTTGTTGACGA+AGG - chr1_3:643951-643970 Msa0095490:intron 45.0%
TCGTCAACAACATCAATGGG+AGG + chr1_3:643951-643970 Msa0095500:intron 45.0%
GGATCGGTACCTTAGAGTAA+TGG - chr1_3:644028-644047 Msa0095490:intron 45.0%
GATCTCTTGCTTTGGTACCA+TGG + chr1_3:644112-644131 Msa0095500:intron 45.0%
! AGATGATGGTAGCAGATCCA+TGG - chr1_3:644132-644151 Msa0095490:intron 45.0%
CTGATCCGACGAGAGATTAA+TGG - chr1_3:644908-644927 Msa0095490:intron 45.0%
CATTAATCTCTCGTCGGATC+AGG + chr1_3:644906-644925 Msa0095500:intron 45.0%
! CCATGTCTGAAACTCGGAAA+AGG - chr1_3:645530-645549 Msa0095490:intron 45.0%
! CCTTTTCCGAGTTTCAGACA+TGG + chr1_3:645527-645546 Msa0095500:intron 45.0%
TCACGGATATAAGCAGGTGA+AGG + chr1_3:645619-645638 Msa0095500:intron 45.0%
TATAAGCAGGTGAAGGACTG+AGG + chr1_3:645626-645645 Msa0095500:intron 45.0%
TTGAATCATTGGCCGCAGAA+CGG + chr1_3:645934-645953 Msa0095500:intron 45.0%
ATGTAGGTACGACCATTACG+AGG + chr1_3:646597-646616 Msa0095500:intron 45.0%
GCTGCCATCTATTGCTATAG+AGG - chr1_3:646760-646779 Msa0095510:CDS 45.0%
GATTAGCATGACACAGGGAA+TGG + chr1_3:647358-647377 Msa0095500:intron 45.0%
CTGGAGAAAAACACACAGGA+GGG - chr1_3:647387-647406 None:intergenic 45.0%
ACTGGAGAAAAACACACAGG+AGG - chr1_3:647388-647407 None:intergenic 45.0%
! TGGCGGCCAAATACCATTTT+TGG + chr1_3:648106-648125 Msa0095500:intron 45.0%
AACTGATACGTACACAGGCA+TGG - chr1_3:648805-648824 None:intergenic 45.0%
ATTGTTTAGCGTGTGTGGTC+TGG + chr1_3:649503-649522 Msa0095500:intron 45.0%
TTGTTTAGCGTGTGTGGTCT+GGG + chr1_3:649504-649523 Msa0095500:intron 45.0%
TCTGGGTCGGTATTCACAAT+AGG + chr1_3:649521-649540 Msa0095500:intron 45.0%
! CAAAGTTTGTGAGGCACTCA+AGG + chr1_3:649953-649972 Msa0095500:intron 45.0%
GAATGTACGCAATCCGTTGA+AGG - chr1_3:650446-650465 None:intergenic 45.0%
GAAGTGAGGATTCATAGGCA+TGG - chr1_3:650487-650506 None:intergenic 45.0%
GAGCAAGCTTTCATTGCTAG+TGG - chr1_3:641885-641904 Msa0095490:intron 45.0%
CAAGTACAAAGGTCATAGGC+TGG - chr1_3:650569-650588 None:intergenic 45.0%
GATGGGGAAGAGATTCTAAC+AGG + chr1_3:641627-641646 Msa0095500:five_prime_UTR 45.0%
TTGTACTTGCCAACGAGCTT+AGG - chr1_3:641816-641835 Msa0095490:intron 45.0%
AAGCTCGTTGGCAAGTACAA+TGG + chr1_3:641816-641835 Msa0095500:five_prime_UTR 45.0%
TTGGCAAGTACAATGGCCAT+AGG + chr1_3:651048-651067 Msa0095500:three_prime_UTR 45.0%
! CTCCTTTGCGCAACTTTTGA+AGG - chr1_3:642279-642298 Msa0095490:intron 45.0%
CTTCAAAAGTTGCGCAAAGG+AGG + chr1_3:642277-642296 Msa0095500:CDS 45.0%
!!! TTTGAAAAATAAAATTATTT+TGG + chr1_3:641985-642004 Msa0095500:five_prime_UTR 5.0%
!! TATCTAAAAATATAAAAAAT+AGG + chr1_3:642978-642997 Msa0095500:intron 5.0%
!!! TTATTTTATTTTTTATATCA+GGG - chr1_3:643094-643113 Msa0095490:intron 5.0%
!!! TTTATTTTATTTTTTATATC+AGG - chr1_3:643095-643114 Msa0095490:intron 5.0%
!!! AAATGATAATTTTATTTTAT+TGG - chr1_3:649170-649189 None:intergenic 5.0%
!!! TTTGAAAAATAAAATTATTT+TGG + chr1_3:641985-642004 Msa0095500:five_prime_UTR 5.0%
AAGTTGCGCAAAGGAGGTGA+CGG + chr1_3:642283-642302 Msa0095500:CDS 50.0%
AACCGTTTCTTGCATGAGCG+AGG - chr1_3:642861-642880 Msa0095490:intron 50.0%
AGGGGCGGAACATAAGCTAA+GGG - chr1_3:643738-643757 Msa0095490:intron 50.0%
TCTCCAATGATATGGAGGGG+CGG - chr1_3:643753-643772 Msa0095490:intron 50.0%
GGAGGTCTCCAATGATATGG+AGG - chr1_3:643758-643777 Msa0095490:intron 50.0%
! AGGTTTTCCCCCTGCAATAG+AGG + chr1_3:643792-643811 Msa0095500:intron 50.0%
GTGAACCTTCTGAGTAGAGG+GGG - chr1_3:643821-643840 Msa0095490:intron 50.0%
!! TCTGGATGGTGGTGGGAATA+GGG - chr1_3:643861-643880 Msa0095490:intron 50.0%
!! ATCTGGATGGTGGTGGGAAT+AGG - chr1_3:643862-643881 Msa0095490:intron 50.0%
TGTAGCAAGAGGAGTGATGG+TGG - chr1_3:643906-643925 Msa0095490:intron 50.0%
!! TATGGGTTGGCTGTAGCAAG+AGG - chr1_3:643917-643936 Msa0095490:intron 50.0%
! CGAAGGGATCTGGTGGATAT+GGG - chr1_3:643934-643953 Msa0095490:intron 50.0%
! ACGAAGGGATCTGGTGGATA+TGG - chr1_3:643935-643954 Msa0095490:intron 50.0%
TTGTTGACGAAGGGATCTGG+TGG - chr1_3:643941-643960 Msa0095490:intron 50.0%
ACAATCGGTCGAGACAGAGA+GGG - chr1_3:644060-644079 Msa0095490:intron 50.0%
!! CAAGGATGAGCATCGACGAT+GGG - chr1_3:644181-644200 Msa0095490:intron 50.0%
!! ACAAGGATGAGCATCGACGA+TGG - chr1_3:644182-644201 Msa0095490:intron 50.0%
CGTCGATGCTCATCCTTGTA+CGG + chr1_3:644183-644202 Msa0095500:intron 50.0%
!! CTTTTGTTTGGCGGTTCCCA+GGG - chr1_3:644212-644231 Msa0095490:intron 50.0%
!! ACTTTTGTTTGGCGGTTCCC+AGG - chr1_3:644213-644232 Msa0095490:intron 50.0%
TGGGAACCGCCAAACAAAAG+TGG + chr1_3:644212-644231 Msa0095500:intron 50.0%
CTCTTCGTTGTCATGGATCG+TGG + chr1_3:644565-644584 Msa0095500:intron 50.0%
TCGTTGTCATGGATCGTGGA+AGG + chr1_3:644569-644588 Msa0095500:intron 50.0%
TCACCATCCTCTACTTCCAG+AGG + chr1_3:646540-646559 Msa0095500:intron 50.0%
! TCACCTCTGGAAGTAGAGGA+TGG - chr1_3:646546-646565 Msa0095490:CDS 50.0%
GGTCGTACCTACATCACCAT+TGG - chr1_3:646591-646610 Msa0095490:five_prime_UTR 50.0%
GATGTAATGCTCCACTCGTG+CGG + chr1_3:647553-647572 Msa0095500:intron 50.0%
CTAGTAGCTGCCCTACATCA+AGG - chr1_3:647643-647662 None:intergenic 50.0%
GTCATAATCCGGGTCTGAGA+AGG + chr1_3:648695-648714 Msa0095500:intron 50.0%
CACCATCGCTTTAGCAATCG+CGG + chr1_3:649920-649939 Msa0095500:intron 50.0%
ATCCGCGATTGCTAAAGCGA+TGG - chr1_3:649925-649944 None:intergenic 50.0%
AAAGGTCATAGGCTGGTGCT+AGG - chr1_3:650562-650581 None:intergenic 50.0%
GAAGGCGATCCTAAGTTCGT+TGG - chr1_3:650592-650611 None:intergenic 50.0%
AAGTTGCGCAAAGGAGGTGA+CGG + chr1_3:642283-642302 Msa0095500:CDS 50.0%
GAAGGCGATCCTAAGCTCGT+TGG + chr1_3:641804-641823 Msa0095500:five_prime_UTR 55.0%
AGTTGCGCAAAGGAGGTGAC+GGG + chr1_3:642284-642303 Msa0095500:CDS 55.0%
GCTGCTGCAGAGATTGGAGA+TGG + chr1_3:642337-642356 Msa0095500:CDS 55.0%
AGAGGCTCTGCCTTCTCTCT+AGG + chr1_3:643708-643727 Msa0095500:intron 55.0%
GAGGGGCGGAACATAAGCTA+AGG - chr1_3:643739-643758 Msa0095490:intron 55.0%
GTTCCGCCCCTCCATATCAT+TGG + chr1_3:643747-643766 Msa0095500:intron 55.0%
GGGGGAGGTCTCCAATGATA+TGG - chr1_3:643761-643780 Msa0095490:intron 55.0%
AAAACCTCCATTGCGGAGGG+GGG - chr1_3:643779-643798 Msa0095490:intron 55.0%
GAAAACCTCCATTGCGGAGG+GGG - chr1_3:643780-643799 Msa0095490:intron 55.0%
GGAAAACCTCCATTGCGGAG+GGG - chr1_3:643781-643800 Msa0095490:intron 55.0%
GGGAAAACCTCCATTGCGGA+GGG - chr1_3:643782-643801 Msa0095490:intron 55.0%
CAGGGGGAAAACCTCCATTG+CGG - chr1_3:643786-643805 Msa0095490:intron 55.0%
AGGGGGAAGCCTCTATTGCA+GGG - chr1_3:643804-643823 Msa0095490:intron 55.0%
!! GAGGAGTGATGGTGGTGATG+TGG - chr1_3:643898-643917 Msa0095490:intron 55.0%
GGCTGTAGCAAGAGGAGTGA+TGG - chr1_3:643909-643928 Msa0095490:intron 55.0%
! GGGATCTGGTGGATATGGGT+TGG - chr1_3:643930-643949 Msa0095490:intron 55.0%
GAGGCTCTCTCTGTTGCTCT+CGG + chr1_3:643970-643989 Msa0095500:intron 55.0%
GAGAGGGTGGCATTCTGGAT+CGG - chr1_3:644044-644063 Msa0095490:intron 55.0%
AGACAGAGAGGGTGGCATTC+TGG - chr1_3:644049-644068 Msa0095490:intron 55.0%
GACAATCGGTCGAGACAGAG+AGG - chr1_3:644061-644080 Msa0095490:intron 55.0%
! TTAACATGAGGTGGCGGCTC+CGG - chr1_3:644089-644108 Msa0095490:intron 55.0%
!! ATGAGCATCGACGATGGGTG+GGG - chr1_3:644176-644195 Msa0095490:intron 55.0%
!! GATGAGCATCGACGATGGGT+GGG - chr1_3:644177-644196 Msa0095490:intron 55.0%
! CACCTCTGGAAGTAGGGGAA+TGG + chr1_3:645366-645385 Msa0095500:intron 55.0%
CACCATTCCCCTACTTCCAG+AGG - chr1_3:645371-645390 Msa0095490:intron 55.0%
ACTGAAGAAAGCCGCACGAG+TGG - chr1_3:647567-647586 None:intergenic 55.0%
TTAGCGTGTGTGGTCTGGGT+CGG + chr1_3:649508-649527 Msa0095500:intron 55.0%
GAAGGCGATCCTAAGCTCGT+TGG + chr1_3:641804-641823 Msa0095500:five_prime_UTR 55.0%
AGTTGCGCAAAGGAGGTGAC+GGG + chr1_3:642284-642303 Msa0095500:CDS 55.0%
GTTGCGCAAAGGAGGTGACG+GGG + chr1_3:642285-642304 Msa0095500:CDS 60.0%
!! AGGTGACGGGGCTGCTAGAT+CGG + chr1_3:642297-642316 Msa0095500:CDS 60.0%
GGGGCTGCTAGATCGGAGAT+GGG + chr1_3:642304-642323 Msa0095500:CDS 60.0%
CTGCTAGATCGGAGATGGGC+CGG + chr1_3:642308-642327 Msa0095500:CDS 60.0%
TGCTAGATCGGAGATGGGCC+GGG + chr1_3:642309-642328 Msa0095500:CDS 60.0%
GACGGAGCTGCTGCAGAGAT+TGG + chr1_3:642331-642350 Msa0095500:CDS 60.0%
GGGGAAAACCTCCATTGCGG+AGG - chr1_3:643783-643802 Msa0095490:intron 60.0%
GGGGAAGCCTCTATTGCAGG+GGG - chr1_3:643802-643821 Msa0095490:intron 60.0%
GGGGGAAGCCTCTATTGCAG+GGG - chr1_3:643803-643822 Msa0095490:intron 60.0%
GAGGGGGAAGCCTCTATTGC+AGG - chr1_3:643805-643824 Msa0095490:intron 60.0%
GGCTTCCCCCTCTACTCAGA+AGG + chr1_3:643813-643832 Msa0095500:intron 60.0%
ATCGGTCGAGACAGAGAGGG+TGG - chr1_3:644057-644076 Msa0095490:intron 60.0%
CTCGACCGATTGTCCTCCAC+CGG + chr1_3:644067-644086 Msa0095500:intron 60.0%
!! GGATGAGCATCGACGATGGG+TGG - chr1_3:644178-644197 Msa0095490:intron 60.0%
TCATCCTTGTACGGCCTCCC+TGG + chr1_3:644192-644211 Msa0095500:intron 60.0%
CATCCTTGTACGGCCTCCCT+GGG + chr1_3:644193-644212 Msa0095500:intron 60.0%
TTGTTTGGCGGTTCCCAGGG+AGG - chr1_3:644209-644228 Msa0095490:intron 60.0%
GTGTGAAAGCAGGGGCAGAC+AGG + chr1_3:648494-648513 Msa0095500:intron 60.0%
GTTGCGCAAAGGAGGTGACG+GGG + chr1_3:642285-642304 Msa0095500:CDS 60.0%
!! AGGTGACGGGGCTGCTAGAT+CGG + chr1_3:642297-642316 Msa0095500:CDS 60.0%
CGGGGCTGCTAGATCGGAGA+TGG + chr1_3:642303-642322 Msa0095500:CDS 65.0%
AGATCGGAGATGGGCCGGGA+CGG + chr1_3:642313-642332 Msa0095500:CDS 65.0%
TCTCTGCAGCAGCTCCGTCC+CGG - chr1_3:642330-642349 Msa0095490:intron 65.0%
CGGCTCCGGTGGAGGACAAT+CGG - chr1_3:644075-644094 Msa0095490:intron 65.0%
GTTCCCAGGGAGGCCGTACA+AGG - chr1_3:644199-644218 Msa0095490:intron 65.0%
CGGGGCTGCTAGATCGGAGA+TGG + chr1_3:642303-642322 Msa0095500:CDS 65.0%
GAGACCTCCCCCCTCCGCAA+TGG + chr1_3:643769-643788 Msa0095500:intron 70.0%
ACCTCCCCCCTCCGCAATGG+AGG + chr1_3:643772-643791 Msa0095500:intron 70.0%
ACCTCCATTGCGGAGGGGGG+AGG - chr1_3:643776-643795 Msa0095490:intron 70.0%
! ACATGAGGTGGCGGCTCCGG+TGG - chr1_3:644086-644105 Msa0095490:intron 70.0%
! TGAGGTGGCGGCTCCGGTGG+AGG - chr1_3:644083-644102 Msa0095490:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 641495 651551 641495 ID=Msa0095500;Name=Msa0095500
chr1_3 mRNA 641495 651551 641495 ID=Msa0095500-mRNA-1;Parent=Msa0095500;Name=Msa0095500-mRNA-1;_AED=0.34;_eAED=0.34;_QI=774|0.25|0.6|1|0|0|5|1306|118
chr1_3 exon 641495 642403 641495 ID=Msa0095500-mRNA-1:exon:33;Parent=Msa0095500-mRNA-1
chr1_3 exon 642591 642671 642591 ID=Msa0095500-mRNA-1:exon:34;Parent=Msa0095500-mRNA-1
chr1_3 exon 642774 642884 642774 ID=Msa0095500-mRNA-1:exon:35;Parent=Msa0095500-mRNA-1
chr1_3 exon 650186 651237 650186 ID=Msa0095500-mRNA-1:exon:36;Parent=Msa0095500-mRNA-1
chr1_3 exon 651268 651551 651268 ID=Msa0095500-mRNA-1:exon:37;Parent=Msa0095500-mRNA-1
chr1_3 five_prime_UTR 641495 642268 641495 ID=Msa0095500-mRNA-1:five_prime_utr;Parent=Msa0095500-mRNA-1
chr1_3 CDS 642269 642403 642269 ID=Msa0095500-mRNA-1:cds;Parent=Msa0095500-mRNA-1
chr1_3 CDS 642591 642671 642591 ID=Msa0095500-mRNA-1:cds;Parent=Msa0095500-mRNA-1
chr1_3 CDS 642774 642884 642774 ID=Msa0095500-mRNA-1:cds;Parent=Msa0095500-mRNA-1
chr1_3 CDS 650186 650215 650186 ID=Msa0095500-mRNA-1:cds;Parent=Msa0095500-mRNA-1
chr1_3 three_prime_UTR 650216 651237 650216 ID=Msa0095500-mRNA-1:three_prime_utr;Parent=Msa0095500-mRNA-1
chr1_3 three_prime_UTR 651268 651551 651268 ID=Msa0095500-mRNA-1:three_prime_utr;Parent=Msa0095500-mRNA-1
Gene Sequence

>Msa0095500

ATGGCTACCTTCAAAAGTTGCGCAAAGGAGGTGACGGGGCTGCTAGATCGGAGATGGGCCGGGACGGAGCTGCTGCAGAGATTGGAGATGGATCGCGACATAACTGTTTTTGGTTCGATAGAACTCGCAAACCAAATATGCTCTTGGATGAATTTAATTCCATTAATTACGATTGAACTCTGCCCTAACTGTTTCTACAATTGCCTTCTTTCAAAGATGTCCAATGTCAAATGGTCTGAATATGTTGAAGTGAAAGGGAGAGTTAAATTACATGATTTCGAAAAATACATTCAAGAACTTCCTCGCTCATGCAAGAAACGGTTGATGGAAAAAAAAATCATTATGCGTCAAAAATAA
Protein sequence

>Msa0095500

MATFKSCAKEVTGLLDRRWAGTELLQRLEMDRDITVFGSIELANQICSWMNLIPLITIELCPNCFYNCLLSKMSNVKWSEYVEVKGRVKLHDFEKYIQELPRSCKKRLMEKKIIMRQK*