AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098370 MtrunA17_Chr1g0151791 88.258 264 27 3 1 262 1 262 1.43e-151 423
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098370 AT3G20430.1 49.254 268 120 7 1 260 1 260 3.81e-69 214

Find 64 sgRNAs with CRISPR-Local

Find 1244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTAACCGTTTGGAATT+TGG 0.158097 1_3:+4296370 Msa0098370:five_prime_UTR
GTCTTCTTCTTCGTAGTTAA+TGG 0.208603 1_3:-4296423 None:intergenic
CTGCTGATGGTAAGCGATTT+CGG 0.295356 1_3:+4299944 Msa0098370:CDS
ATTATCTCTTTGTAAGCATT+TGG 0.296419 1_3:-4300009 None:intergenic
TAATAATACAGAAGCAATTC+AGG 0.298572 1_3:+4300785 Msa0098370:intron
TTACTAACCGTTTGGAATTT+GGG 0.298954 1_3:+4296371 Msa0098370:five_prime_UTR
CGGCGACACCGTTTCGATTA+TGG 0.307561 1_3:-4296502 None:intergenic
AATTACTTGTCATAGTTAAC+TGG 0.317290 1_3:+4301236 Msa0098370:three_prime_UTR
ATTTGCAGTGTTCAAAAGAT+AGG 0.347975 1_3:+4301211 Msa0098370:three_prime_UTR
TGGAGCAGTATGGTTCCATT+TGG 0.397434 1_3:+4301174 Msa0098370:three_prime_UTR
CTCGAGAGTTACTAACCGTT+TGG 0.399664 1_3:+4296363 Msa0098370:five_prime_UTR
AAGAGAAAGAGAAAGGCTTT+AGG 0.415930 1_3:+4296617 Msa0098370:CDS
TGATGTAACCTTGCCTTGAA+TGG 0.441747 1_3:+4301041 Msa0098370:exon
AGATCATCATCGTAGGAAAC+AGG 0.444720 1_3:-4300997 None:intergenic
TGATGTTGAAGAGGGTGAAT+TGG 0.447652 1_3:+4296460 Msa0098370:CDS
ATACAGCTGTAGGTTGCCTT+GGG 0.458577 1_3:+4297002 Msa0098370:CDS
ATTCTCAATCTGTCATGAAC+AGG 0.461182 1_3:-4300973 None:intergenic
TGCTTGTGACAACAAGTTCA+CGG 0.464463 1_3:+4301150 Msa0098370:three_prime_UTR
TATACAGCTGTAGGTTGCCT+TGG 0.468657 1_3:+4297001 Msa0098370:CDS
AAGAAACCTGTCAATGTTGA+TGG 0.484273 1_3:-4296654 None:intergenic
ATGCACCCATCAACATTGAC+AGG 0.486157 1_3:+4296648 Msa0098370:CDS
AGTTCACGGATGGAGCAGTA+TGG 0.487453 1_3:+4301164 Msa0098370:three_prime_UTR
GCTTACCATCAGCAGTCTGC+TGG 0.494811 1_3:-4299936 None:intergenic
TGGAATTTGGGCATGGAGGG+TGG 0.498961 1_3:+4296383 Msa0098370:exon
AGCAGTCTGCTGGCCTCCAC+AGG 0.505033 1_3:-4299926 None:intergenic
TCTTTCATGCAAAATCCAAA+TGG 0.506086 1_3:-4301189 None:intergenic
GTTTGGAATTTGGGCATGGA+GGG 0.508864 1_3:+4296380 Msa0098370:exon
GATGGTAAGCGATTTCGGAC+AGG 0.509601 1_3:+4299949 Msa0098370:CDS
GTGTATGGAAAGAAGAAAGA+AGG 0.513511 1_3:-4301107 None:intergenic
TCTAATAAAATATATACTGT+TGG 0.520447 1_3:+4301284 Msa0098370:three_prime_UTR
TCCTACGATGATGATCTGCT+TGG 0.520590 1_3:+4301003 Msa0098370:CDS
AACCGTTTGGAATTTGGGCA+TGG 0.528408 1_3:+4296376 Msa0098370:exon
GAGAAAGGCTTTAGGAGGAT+CGG 0.532126 1_3:+4296625 Msa0098370:CDS
ATGGATGGCTGCTTAAAACT+TGG 0.552204 1_3:-4300811 None:intergenic
CTCCATGCCCAAATTCCAAA+CGG 0.557900 1_3:-4296378 None:intergenic
ATGGTAAGCGATTTCGGACA+GGG 0.567855 1_3:+4299950 Msa0098370:CDS
GAACAAGACCATAATCGAAA+CGG 0.575699 1_3:+4296494 Msa0098370:CDS
TGCATTTGCAATGCGCAAGT+AGG 0.576496 1_3:-4300910 None:intergenic
CGCTCAACGCAGAAATCCCA+AGG 0.577857 1_3:-4297018 None:intergenic
CGTTTGGAATTTGGGCATGG+AGG 0.580204 1_3:+4296379 Msa0098370:exon
AGAAAGAGAAAGGCTTTAGG+AGG 0.581783 1_3:+4296620 Msa0098370:CDS
CAAGATCAAGATAAACCACT+AGG 0.591207 1_3:+4300931 Msa0098370:CDS
AAACGGTGTCGCCGCCACAC+AGG 0.597293 1_3:+4296511 Msa0098370:CDS
AGAAGAAGACGATGTTGAGA+TGG 0.597325 1_3:+4296436 Msa0098370:CDS
AGAGGAGGATTCTTCTCAAG+AGG 0.611513 1_3:+4300840 Msa0098370:CDS
TGTGACAACAAGTTCACGGA+TGG 0.614628 1_3:+4301154 Msa0098370:three_prime_UTR
GGTTTGTGATAGAGACATGT+CGG 0.623578 1_3:+4296948 Msa0098370:intron
TAGAACGTTGTTGAAAAGTG+TGG 0.623743 1_3:+4301307 Msa0098370:three_prime_UTR
GAGATGGTTGATGTTGAAGA+GGG 0.630707 1_3:+4296452 Msa0098370:CDS
GGAGGCCAGCAGACTGCTGA+TGG 0.631237 1_3:+4299931 Msa0098370:CDS
TGAGATGGTTGATGTTGAAG+AGG 0.639578 1_3:+4296451 Msa0098370:CDS
GGTAAGCGATTTCGGACAGG+GGG 0.641482 1_3:+4299952 Msa0098370:CDS
AAGTAGGATTGTCAGAAACA+TGG 0.643430 1_3:-4300894 None:intergenic
ACGTTGTTGAAAAGTGTGGT+TGG 0.646774 1_3:+4301311 Msa0098370:three_prime_UTR
AGAAACCTGTCAATGTTGAT+GGG 0.647666 1_3:-4296653 None:intergenic
GTTGAGCGATATCGTCAAAG+AGG 0.648067 1_3:+4297033 Msa0098370:CDS
TACATGGTATATACAGCTGT+AGG 0.664112 1_3:+4296992 Msa0098370:CDS
TGCGCACTAGAAAATGTACA+AGG 0.667493 1_3:-4300865 None:intergenic
GACACAATACAGTCCTGTGG+AGG 0.677901 1_3:+4299913 Msa0098370:CDS
GTAGACACAATACAGTCCTG+TGG 0.699061 1_3:+4299910 Msa0098370:CDS
TCCAAGCAGATCATCATCGT+AGG 0.701708 1_3:-4301004 None:intergenic
TGGTAAGCGATTTCGGACAG+GGG 0.706451 1_3:+4299951 Msa0098370:CDS
GAGATTATGATCCTGTGTGG+CGG 0.728683 1_3:-4296522 None:intergenic
AATGAGATTATGATCCTGTG+TGG 0.779299 1_3:-4296525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATCATGAAATATA+AGG - chr1_3:4298091-4298110 None:intergenic 10.0%
!! TATTTCATGATTTATTTAAT+AGG + chr1_3:4298093-4298112 Msa0098370:intron 10.0%
!! GTATTATCAATATAATTATT+CGG + chr1_3:4298209-4298228 Msa0098370:intron 10.0%
!! TGTATAAAATTAAATAATGA+AGG - chr1_3:4299194-4299213 None:intergenic 10.0%
!!! TTTAACATTTTAATTTTTTC+TGG + chr1_3:4299362-4299381 Msa0098370:intron 10.0%
!! TAAATAAATCATGAAATATA+AGG - chr1_3:4298091-4298110 None:intergenic 10.0%
!! TATTTCATGATTTATTTAAT+AGG + chr1_3:4298093-4298112 Msa0098370:intron 10.0%
!! GTATTATCAATATAATTATT+CGG + chr1_3:4298209-4298228 Msa0098370:intron 10.0%
!! TGTATAAAATTAAATAATGA+AGG - chr1_3:4299194-4299213 None:intergenic 10.0%
!!! TTTAACATTTTAATTTTTTC+TGG + chr1_3:4299362-4299381 Msa0098370:intron 10.0%
!! TAAATAAATCATGAAATATA+AGG - chr1_3:4298091-4298110 None:intergenic 10.0%
!! TATTTCATGATTTATTTAAT+AGG + chr1_3:4298093-4298112 Msa0098370:intron 10.0%
!! GTATTATCAATATAATTATT+CGG + chr1_3:4298209-4298228 Msa0098370:intron 10.0%
!! TGTATAAAATTAAATAATGA+AGG - chr1_3:4299194-4299213 None:intergenic 10.0%
!!! TTTAACATTTTAATTTTTTC+TGG + chr1_3:4299362-4299381 Msa0098370:intron 10.0%
!! TAAATAAATCATGAAATATA+AGG - chr1_3:4298091-4298110 None:intergenic 10.0%
!! TATTTCATGATTTATTTAAT+AGG + chr1_3:4298093-4298112 Msa0098370:intron 10.0%
!! GTATTATCAATATAATTATT+CGG + chr1_3:4298209-4298228 Msa0098370:intron 10.0%
!! TGTATAAAATTAAATAATGA+AGG - chr1_3:4299194-4299213 None:intergenic 10.0%
!!! TTTAACATTTTAATTTTTTC+TGG + chr1_3:4299362-4299381 Msa0098370:intron 10.0%
!!! AGAGTATTTGAATTATATTT+TGG + chr1_3:4298048-4298067 Msa0098370:intron 15.0%
!!! GAGTATTTGAATTATATTTT+GGG + chr1_3:4298049-4298068 Msa0098370:intron 15.0%
!! GATATCTTATTGAAATAATA+AGG - chr1_3:4298269-4298288 None:intergenic 15.0%
!!! AATACTTTACTCTAAAATTT+GGG - chr1_3:4298671-4298690 None:intergenic 15.0%
!! AATAAAGGGAAATTATTAAA+AGG - chr1_3:4298904-4298923 None:intergenic 15.0%
!!! TATTTAGGAAAATTCAATTT+TGG - chr1_3:4299272-4299291 None:intergenic 15.0%
!! GTTAAATTCTTATAAAACAA+AGG - chr1_3:4299348-4299367 None:intergenic 15.0%
!! TCTAATAAAATATATACTGT+TGG + chr1_3:4301284-4301303 Msa0098370:three_prime_UTR 15.0%
!!! AGAGTATTTGAATTATATTT+TGG + chr1_3:4298048-4298067 Msa0098370:intron 15.0%
!!! GAGTATTTGAATTATATTTT+GGG + chr1_3:4298049-4298068 Msa0098370:intron 15.0%
!! GATATCTTATTGAAATAATA+AGG - chr1_3:4298269-4298288 None:intergenic 15.0%
!!! AATACTTTACTCTAAAATTT+GGG - chr1_3:4298671-4298690 None:intergenic 15.0%
!! AATAAAGGGAAATTATTAAA+AGG - chr1_3:4298904-4298923 None:intergenic 15.0%
!!! TATTTAGGAAAATTCAATTT+TGG - chr1_3:4299272-4299291 None:intergenic 15.0%
!! GTTAAATTCTTATAAAACAA+AGG - chr1_3:4299348-4299367 None:intergenic 15.0%
!! TCTAATAAAATATATACTGT+TGG + chr1_3:4301284-4301303 Msa0098370:three_prime_UTR 15.0%
!!! AGAGTATTTGAATTATATTT+TGG + chr1_3:4298048-4298067 Msa0098370:intron 15.0%
!!! GAGTATTTGAATTATATTTT+GGG + chr1_3:4298049-4298068 Msa0098370:intron 15.0%
!! GATATCTTATTGAAATAATA+AGG - chr1_3:4298269-4298288 None:intergenic 15.0%
!!! AATACTTTACTCTAAAATTT+GGG - chr1_3:4298671-4298690 None:intergenic 15.0%
!! AATAAAGGGAAATTATTAAA+AGG - chr1_3:4298904-4298923 None:intergenic 15.0%
!!! TATTTAGGAAAATTCAATTT+TGG - chr1_3:4299272-4299291 None:intergenic 15.0%
!! GTTAAATTCTTATAAAACAA+AGG - chr1_3:4299348-4299367 None:intergenic 15.0%
!! TCTAATAAAATATATACTGT+TGG + chr1_3:4301284-4301303 Msa0098370:three_prime_UTR 15.0%
!!! AGAGTATTTGAATTATATTT+TGG + chr1_3:4298048-4298067 Msa0098370:intron 15.0%
!!! GAGTATTTGAATTATATTTT+GGG + chr1_3:4298049-4298068 Msa0098370:intron 15.0%
!! GATATCTTATTGAAATAATA+AGG - chr1_3:4298269-4298288 None:intergenic 15.0%
!!! AATACTTTACTCTAAAATTT+GGG - chr1_3:4298671-4298690 None:intergenic 15.0%
!! AATAAAGGGAAATTATTAAA+AGG - chr1_3:4298904-4298923 None:intergenic 15.0%
!!! TATTTAGGAAAATTCAATTT+TGG - chr1_3:4299272-4299291 None:intergenic 15.0%
!! GTTAAATTCTTATAAAACAA+AGG - chr1_3:4299348-4299367 None:intergenic 15.0%
!! TCTAATAAAATATATACTGT+TGG + chr1_3:4301284-4301303 Msa0098370:three_prime_UTR 15.0%
!! AGAGTAATGATTAAATGTAA+TGG - chr1_3:4296861-4296880 None:intergenic 20.0%
!! TGTATTTACTTATGTCAAAA+CGG - chr1_3:4296893-4296912 None:intergenic 20.0%
!! TTCATTTGATAAAACAGTTT+AGG - chr1_3:4297253-4297272 None:intergenic 20.0%
!!! AACTGTTTTATCAAATGAAA+AGG + chr1_3:4297254-4297273 Msa0098370:intron 20.0%
!! TCTTCAATTATTAAGATATC+TGG - chr1_3:4297282-4297301 None:intergenic 20.0%
!! AGAATTACAAAATCAGTATT+AGG - chr1_3:4297581-4297600 None:intergenic 20.0%
!!! TAAGAATGATCAATATTTTG+TGG + chr1_3:4297792-4297811 Msa0098370:intron 20.0%
!!! TTTGAATTATATTTTGGGTT+TGG + chr1_3:4298054-4298073 Msa0098370:intron 20.0%
!! TCATGAAATATAAGGAAATA+TGG - chr1_3:4298083-4298102 None:intergenic 20.0%
!! TATTGAAATAATAAGGACTT+GGG - chr1_3:4298262-4298281 None:intergenic 20.0%
!! TTATTGAAATAATAAGGACT+TGG - chr1_3:4298263-4298282 None:intergenic 20.0%
!! ATCTAAGGAAAAAAACAATA+TGG + chr1_3:4298484-4298503 Msa0098370:intron 20.0%
!! TCTAAGGAAAAAAACAATAT+GGG + chr1_3:4298485-4298504 Msa0098370:intron 20.0%
!!! TTGTTTTGAACTTTTTTGTT+TGG - chr1_3:4298642-4298661 None:intergenic 20.0%
!!! CAATACTTTACTCTAAAATT+TGG - chr1_3:4298672-4298691 None:intergenic 20.0%
!! TAATAATTTCCCTTTATTGA+TGG + chr1_3:4298906-4298925 Msa0098370:intron 20.0%
!! AATAATTTCCCTTTATTGAT+GGG + chr1_3:4298907-4298926 Msa0098370:intron 20.0%
!! TATATGAGAGAAAAATAAAG+TGG - chr1_3:4299226-4299245 None:intergenic 20.0%
!! AATTTCATTACAGTTATAGA+AGG + chr1_3:4299321-4299340 Msa0098370:intron 20.0%
!!! TTAAGATTTTAGTGTAAACA+TGG + chr1_3:4299445-4299464 Msa0098370:intron 20.0%
!!! GTTGAAATCTAAAATATTGT+TGG + chr1_3:4299516-4299535 Msa0098370:intron 20.0%
!! CCAAAATTCATAACAAAAAA+TGG - chr1_3:4299683-4299702 None:intergenic 20.0%
!!! CCATTTTTTGTTATGAATTT+TGG + chr1_3:4299680-4299699 Msa0098370:intron 20.0%
!! ATTATACTCTTCATAAATCA+TGG + chr1_3:4299724-4299743 Msa0098370:intron 20.0%
!!! TTGGATTGATAATTTTTACT+AGG - chr1_3:4300268-4300287 None:intergenic 20.0%
!! AGAGTAAAGTGAAAAAAAAA+AGG - chr1_3:4300305-4300324 None:intergenic 20.0%
!!! TTTTTTTCACTTTACTCTAA+TGG + chr1_3:4300307-4300326 Msa0098370:intron 20.0%
!!! TTTTTTCACTTTACTCTAAT+GGG + chr1_3:4300308-4300327 Msa0098370:intron 20.0%
!!! CCAGTTTTTTTTTTATGTTA+GGG - chr1_3:4300368-4300387 None:intergenic 20.0%
!!! TCCAGTTTTTTTTTTATGTT+AGG - chr1_3:4300369-4300388 None:intergenic 20.0%
!! TAAAACTAATACCAGAAAAA+TGG + chr1_3:4300496-4300515 Msa0098370:intron 20.0%
!! TTGATTAATAATCAACCAAA+AGG + chr1_3:4300698-4300717 Msa0098370:intron 20.0%
!!! ATAATATTTGAATGACCTTT+TGG - chr1_3:4300716-4300735 None:intergenic 20.0%
!! AGAGTAATGATTAAATGTAA+TGG - chr1_3:4296861-4296880 None:intergenic 20.0%
!! TGTATTTACTTATGTCAAAA+CGG - chr1_3:4296893-4296912 None:intergenic 20.0%
!! TTCATTTGATAAAACAGTTT+AGG - chr1_3:4297253-4297272 None:intergenic 20.0%
!!! AACTGTTTTATCAAATGAAA+AGG + chr1_3:4297254-4297273 Msa0098370:intron 20.0%
!! TCTTCAATTATTAAGATATC+TGG - chr1_3:4297282-4297301 None:intergenic 20.0%
!! AGAATTACAAAATCAGTATT+AGG - chr1_3:4297581-4297600 None:intergenic 20.0%
!!! TAAGAATGATCAATATTTTG+TGG + chr1_3:4297792-4297811 Msa0098370:intron 20.0%
!!! TTTGAATTATATTTTGGGTT+TGG + chr1_3:4298054-4298073 Msa0098370:intron 20.0%
!! TCATGAAATATAAGGAAATA+TGG - chr1_3:4298083-4298102 None:intergenic 20.0%
!! TATTGAAATAATAAGGACTT+GGG - chr1_3:4298262-4298281 None:intergenic 20.0%
!! TTATTGAAATAATAAGGACT+TGG - chr1_3:4298263-4298282 None:intergenic 20.0%
!! ATCTAAGGAAAAAAACAATA+TGG + chr1_3:4298484-4298503 Msa0098370:intron 20.0%
!! TCTAAGGAAAAAAACAATAT+GGG + chr1_3:4298485-4298504 Msa0098370:intron 20.0%
!!! TTGTTTTGAACTTTTTTGTT+TGG - chr1_3:4298642-4298661 None:intergenic 20.0%
!!! CAATACTTTACTCTAAAATT+TGG - chr1_3:4298672-4298691 None:intergenic 20.0%
!! TAATAATTTCCCTTTATTGA+TGG + chr1_3:4298906-4298925 Msa0098370:intron 20.0%
!! AATAATTTCCCTTTATTGAT+GGG + chr1_3:4298907-4298926 Msa0098370:intron 20.0%
!! TATATGAGAGAAAAATAAAG+TGG - chr1_3:4299226-4299245 None:intergenic 20.0%
!! AATTTCATTACAGTTATAGA+AGG + chr1_3:4299321-4299340 Msa0098370:intron 20.0%
!!! TTAAGATTTTAGTGTAAACA+TGG + chr1_3:4299445-4299464 Msa0098370:intron 20.0%
!!! GTTGAAATCTAAAATATTGT+TGG + chr1_3:4299516-4299535 Msa0098370:intron 20.0%
!! CCAAAATTCATAACAAAAAA+TGG - chr1_3:4299683-4299702 None:intergenic 20.0%
!!! CCATTTTTTGTTATGAATTT+TGG + chr1_3:4299680-4299699 Msa0098370:intron 20.0%
!! ATTATACTCTTCATAAATCA+TGG + chr1_3:4299724-4299743 Msa0098370:intron 20.0%
!!! TTGGATTGATAATTTTTACT+AGG - chr1_3:4300268-4300287 None:intergenic 20.0%
!! AGAGTAAAGTGAAAAAAAAA+AGG - chr1_3:4300305-4300324 None:intergenic 20.0%
!!! TTTTTTTCACTTTACTCTAA+TGG + chr1_3:4300307-4300326 Msa0098370:intron 20.0%
!!! TTTTTTCACTTTACTCTAAT+GGG + chr1_3:4300308-4300327 Msa0098370:intron 20.0%
!!! CCAGTTTTTTTTTTATGTTA+GGG - chr1_3:4300368-4300387 None:intergenic 20.0%
!!! TCCAGTTTTTTTTTTATGTT+AGG - chr1_3:4300369-4300388 None:intergenic 20.0%
!! TAAAACTAATACCAGAAAAA+TGG + chr1_3:4300496-4300515 Msa0098370:intron 20.0%
!! TTGATTAATAATCAACCAAA+AGG + chr1_3:4300698-4300717 Msa0098370:intron 20.0%
!!! ATAATATTTGAATGACCTTT+TGG - chr1_3:4300716-4300735 None:intergenic 20.0%
!! AGAGTAATGATTAAATGTAA+TGG - chr1_3:4296861-4296880 None:intergenic 20.0%
!! TGTATTTACTTATGTCAAAA+CGG - chr1_3:4296893-4296912 None:intergenic 20.0%
!! TTCATTTGATAAAACAGTTT+AGG - chr1_3:4297253-4297272 None:intergenic 20.0%
!!! AACTGTTTTATCAAATGAAA+AGG + chr1_3:4297254-4297273 Msa0098370:intron 20.0%
!! TCTTCAATTATTAAGATATC+TGG - chr1_3:4297282-4297301 None:intergenic 20.0%
!! AGAATTACAAAATCAGTATT+AGG - chr1_3:4297581-4297600 None:intergenic 20.0%
!!! TAAGAATGATCAATATTTTG+TGG + chr1_3:4297792-4297811 Msa0098370:intron 20.0%
!!! TTTGAATTATATTTTGGGTT+TGG + chr1_3:4298054-4298073 Msa0098370:intron 20.0%
!! TCATGAAATATAAGGAAATA+TGG - chr1_3:4298083-4298102 None:intergenic 20.0%
!! TATTGAAATAATAAGGACTT+GGG - chr1_3:4298262-4298281 None:intergenic 20.0%
!! TTATTGAAATAATAAGGACT+TGG - chr1_3:4298263-4298282 None:intergenic 20.0%
!! ATCTAAGGAAAAAAACAATA+TGG + chr1_3:4298484-4298503 Msa0098370:intron 20.0%
!! TCTAAGGAAAAAAACAATAT+GGG + chr1_3:4298485-4298504 Msa0098370:intron 20.0%
!!! TTGTTTTGAACTTTTTTGTT+TGG - chr1_3:4298642-4298661 None:intergenic 20.0%
!!! CAATACTTTACTCTAAAATT+TGG - chr1_3:4298672-4298691 None:intergenic 20.0%
!! TAATAATTTCCCTTTATTGA+TGG + chr1_3:4298906-4298925 Msa0098370:intron 20.0%
!! AATAATTTCCCTTTATTGAT+GGG + chr1_3:4298907-4298926 Msa0098370:intron 20.0%
!! TATATGAGAGAAAAATAAAG+TGG - chr1_3:4299226-4299245 None:intergenic 20.0%
!! AATTTCATTACAGTTATAGA+AGG + chr1_3:4299321-4299340 Msa0098370:intron 20.0%
!!! TTAAGATTTTAGTGTAAACA+TGG + chr1_3:4299445-4299464 Msa0098370:intron 20.0%
!!! GTTGAAATCTAAAATATTGT+TGG + chr1_3:4299516-4299535 Msa0098370:intron 20.0%
!! CCAAAATTCATAACAAAAAA+TGG - chr1_3:4299683-4299702 None:intergenic 20.0%
!!! CCATTTTTTGTTATGAATTT+TGG + chr1_3:4299680-4299699 Msa0098370:intron 20.0%
!! ATTATACTCTTCATAAATCA+TGG + chr1_3:4299724-4299743 Msa0098370:intron 20.0%
!!! TTGGATTGATAATTTTTACT+AGG - chr1_3:4300268-4300287 None:intergenic 20.0%
!! AGAGTAAAGTGAAAAAAAAA+AGG - chr1_3:4300305-4300324 None:intergenic 20.0%
!!! TTTTTTTCACTTTACTCTAA+TGG + chr1_3:4300307-4300326 Msa0098370:intron 20.0%
!!! TTTTTTCACTTTACTCTAAT+GGG + chr1_3:4300308-4300327 Msa0098370:intron 20.0%
!!! CCAGTTTTTTTTTTATGTTA+GGG - chr1_3:4300368-4300387 None:intergenic 20.0%
!!! TCCAGTTTTTTTTTTATGTT+AGG - chr1_3:4300369-4300388 None:intergenic 20.0%
!! TAAAACTAATACCAGAAAAA+TGG + chr1_3:4300496-4300515 Msa0098370:intron 20.0%
!! TTGATTAATAATCAACCAAA+AGG + chr1_3:4300698-4300717 Msa0098370:intron 20.0%
!!! ATAATATTTGAATGACCTTT+TGG - chr1_3:4300716-4300735 None:intergenic 20.0%
!! AGAGTAATGATTAAATGTAA+TGG - chr1_3:4296861-4296880 None:intergenic 20.0%
!! TGTATTTACTTATGTCAAAA+CGG - chr1_3:4296893-4296912 None:intergenic 20.0%
!! TTCATTTGATAAAACAGTTT+AGG - chr1_3:4297253-4297272 None:intergenic 20.0%
!!! AACTGTTTTATCAAATGAAA+AGG + chr1_3:4297254-4297273 Msa0098370:intron 20.0%
!! TCTTCAATTATTAAGATATC+TGG - chr1_3:4297282-4297301 None:intergenic 20.0%
!! AGAATTACAAAATCAGTATT+AGG - chr1_3:4297581-4297600 None:intergenic 20.0%
!!! TAAGAATGATCAATATTTTG+TGG + chr1_3:4297792-4297811 Msa0098370:intron 20.0%
!!! TTTGAATTATATTTTGGGTT+TGG + chr1_3:4298054-4298073 Msa0098370:intron 20.0%
!! TCATGAAATATAAGGAAATA+TGG - chr1_3:4298083-4298102 None:intergenic 20.0%
!! TATTGAAATAATAAGGACTT+GGG - chr1_3:4298262-4298281 None:intergenic 20.0%
!! TTATTGAAATAATAAGGACT+TGG - chr1_3:4298263-4298282 None:intergenic 20.0%
!! ATCTAAGGAAAAAAACAATA+TGG + chr1_3:4298484-4298503 Msa0098370:intron 20.0%
!! TCTAAGGAAAAAAACAATAT+GGG + chr1_3:4298485-4298504 Msa0098370:intron 20.0%
!!! TTGTTTTGAACTTTTTTGTT+TGG - chr1_3:4298642-4298661 None:intergenic 20.0%
!!! CAATACTTTACTCTAAAATT+TGG - chr1_3:4298672-4298691 None:intergenic 20.0%
!! TAATAATTTCCCTTTATTGA+TGG + chr1_3:4298906-4298925 Msa0098370:intron 20.0%
!! AATAATTTCCCTTTATTGAT+GGG + chr1_3:4298907-4298926 Msa0098370:intron 20.0%
!! TATATGAGAGAAAAATAAAG+TGG - chr1_3:4299226-4299245 None:intergenic 20.0%
!! AATTTCATTACAGTTATAGA+AGG + chr1_3:4299321-4299340 Msa0098370:intron 20.0%
!!! TTAAGATTTTAGTGTAAACA+TGG + chr1_3:4299445-4299464 Msa0098370:intron 20.0%
!!! GTTGAAATCTAAAATATTGT+TGG + chr1_3:4299516-4299535 Msa0098370:intron 20.0%
!! CCAAAATTCATAACAAAAAA+TGG - chr1_3:4299683-4299702 None:intergenic 20.0%
!!! CCATTTTTTGTTATGAATTT+TGG + chr1_3:4299680-4299699 Msa0098370:intron 20.0%
!! ATTATACTCTTCATAAATCA+TGG + chr1_3:4299724-4299743 Msa0098370:intron 20.0%
!!! TTGGATTGATAATTTTTACT+AGG - chr1_3:4300268-4300287 None:intergenic 20.0%
!! AGAGTAAAGTGAAAAAAAAA+AGG - chr1_3:4300305-4300324 None:intergenic 20.0%
!!! TTTTTTTCACTTTACTCTAA+TGG + chr1_3:4300307-4300326 Msa0098370:intron 20.0%
!!! TTTTTTCACTTTACTCTAAT+GGG + chr1_3:4300308-4300327 Msa0098370:intron 20.0%
!!! CCAGTTTTTTTTTTATGTTA+GGG - chr1_3:4300368-4300387 None:intergenic 20.0%
!!! TCCAGTTTTTTTTTTATGTT+AGG - chr1_3:4300369-4300388 None:intergenic 20.0%
!! TAAAACTAATACCAGAAAAA+TGG + chr1_3:4300496-4300515 Msa0098370:intron 20.0%
!! TTGATTAATAATCAACCAAA+AGG + chr1_3:4300698-4300717 Msa0098370:intron 20.0%
!!! ATAATATTTGAATGACCTTT+TGG - chr1_3:4300716-4300735 None:intergenic 20.0%
! TAAAAACAAGAGAAAGAGAA+AGG + chr1_3:4296610-4296629 Msa0098370:CDS 25.0%
!! CATTATTAGGGTTTGAAATT+GGG - chr1_3:4296687-4296706 None:intergenic 25.0%
! TAACACATTCAGCATTATTA+GGG - chr1_3:4296699-4296718 None:intergenic 25.0%
! ATAACACATTCAGCATTATT+AGG - chr1_3:4296700-4296719 None:intergenic 25.0%
!! TGATTAAATGTAATGGAACA+AGG - chr1_3:4296854-4296873 None:intergenic 25.0%
!!! ATGAATTATGTGCTTTTTTC+AGG + chr1_3:4296927-4296946 Msa0098370:intron 25.0%
! GAAAGAGAAAAAATCATACA+TGG + chr1_3:4296976-4296995 Msa0098370:CDS 25.0%
!! TACAAAGTTGTTTCAAATTG+TGG - chr1_3:4297184-4297203 None:intergenic 25.0%
!! TTGTTTTCAGACATTCTAAA+TGG - chr1_3:4297219-4297238 None:intergenic 25.0%
! ATTATCAAACCAGTGTAAAA+AGG - chr1_3:4297436-4297455 None:intergenic 25.0%
! TGCTAAGAACTATTGATATT+TGG + chr1_3:4297488-4297507 Msa0098370:intron 25.0%
! GCTAAGAACTATTGATATTT+GGG + chr1_3:4297489-4297508 Msa0098370:intron 25.0%
! CTAAGAACTATTGATATTTG+GGG + chr1_3:4297490-4297509 Msa0098370:intron 25.0%
! TAAGAACTATTGATATTTGG+GGG + chr1_3:4297491-4297510 Msa0098370:intron 25.0%
!!! AATTCTTCTTATTTCTATCG+AGG + chr1_3:4297602-4297621 Msa0098370:intron 25.0%
! GATTATGAAATCAGTTAAGA+AGG - chr1_3:4297728-4297747 None:intergenic 25.0%
! ATACAAGTAAAAGAACACAA+AGG - chr1_3:4297757-4297776 None:intergenic 25.0%
!! TTTGTGTTCTTTTACTTGTA+TGG + chr1_3:4297756-4297775 Msa0098370:intron 25.0%
! ATCTAGTACGAGTATAAATA+AGG + chr1_3:4298128-4298147 Msa0098370:intron 25.0%
! TCTAGTACGAGTATAAATAA+GGG + chr1_3:4298129-4298148 Msa0098370:intron 25.0%
! GTACACTGTAAAAAAATCTA+AGG + chr1_3:4298469-4298488 Msa0098370:intron 25.0%
! AGTAATAGATAAGCATAATC+AGG - chr1_3:4299032-4299051 None:intergenic 25.0%
! TCAAAGTTTAAACAGAGAAT+TGG - chr1_3:4299152-4299171 None:intergenic 25.0%
! TAACTGTAATGAAATTCAGA+TGG - chr1_3:4299317-4299336 None:intergenic 25.0%
!! ATGAAAGTATATTGTTGAGT+AGG + chr1_3:4299391-4299410 Msa0098370:intron 25.0%
! TGATTCTCCTACATATATTA+GGG - chr1_3:4299481-4299500 None:intergenic 25.0%
! TTGATTCTCCTACATATATT+AGG - chr1_3:4299482-4299501 None:intergenic 25.0%
!! GATTTATGAAGAGTATAATG+TGG - chr1_3:4299723-4299742 None:intergenic 25.0%
!! TCTTTGGGTTTAATTATGTT+TGG + chr1_3:4299821-4299840 Msa0098370:intron 25.0%
! TAATTAAGTGTTAAACTCAC+AGG + chr1_3:4299888-4299907 Msa0098370:intron 25.0%
! ATTATCTCTTTGTAAGCATT+TGG - chr1_3:4300012-4300031 None:intergenic 25.0%
! TGTTTAAGCAGTAAAAAGTA+AGG - chr1_3:4300070-4300089 None:intergenic 25.0%
! CCCTAACATAAAAAAAAAAC+TGG + chr1_3:4300365-4300384 Msa0098370:intron 25.0%
!!! ATGAACAATTTCCATTTTTC+TGG - chr1_3:4300510-4300529 None:intergenic 25.0%
! TATCAAACAAAAAATCTTCC+CGG - chr1_3:4300560-4300579 None:intergenic 25.0%
! TAATAATACAGAAGCAATTC+AGG + chr1_3:4300785-4300804 Msa0098370:intron 25.0%
! AATGAATAAAAAAACGTTCC+AGG - chr1_3:4301080-4301099 None:intergenic 25.0%
! TAAAAACAAGAGAAAGAGAA+AGG + chr1_3:4296610-4296629 Msa0098370:CDS 25.0%
!! CATTATTAGGGTTTGAAATT+GGG - chr1_3:4296687-4296706 None:intergenic 25.0%
! TAACACATTCAGCATTATTA+GGG - chr1_3:4296699-4296718 None:intergenic 25.0%
! ATAACACATTCAGCATTATT+AGG - chr1_3:4296700-4296719 None:intergenic 25.0%
!! TGATTAAATGTAATGGAACA+AGG - chr1_3:4296854-4296873 None:intergenic 25.0%
!!! ATGAATTATGTGCTTTTTTC+AGG + chr1_3:4296927-4296946 Msa0098370:intron 25.0%
! GAAAGAGAAAAAATCATACA+TGG + chr1_3:4296976-4296995 Msa0098370:CDS 25.0%
!! TACAAAGTTGTTTCAAATTG+TGG - chr1_3:4297184-4297203 None:intergenic 25.0%
!! TTGTTTTCAGACATTCTAAA+TGG - chr1_3:4297219-4297238 None:intergenic 25.0%
! ATTATCAAACCAGTGTAAAA+AGG - chr1_3:4297436-4297455 None:intergenic 25.0%
! TGCTAAGAACTATTGATATT+TGG + chr1_3:4297488-4297507 Msa0098370:intron 25.0%
! GCTAAGAACTATTGATATTT+GGG + chr1_3:4297489-4297508 Msa0098370:intron 25.0%
! CTAAGAACTATTGATATTTG+GGG + chr1_3:4297490-4297509 Msa0098370:intron 25.0%
! TAAGAACTATTGATATTTGG+GGG + chr1_3:4297491-4297510 Msa0098370:intron 25.0%
!!! AATTCTTCTTATTTCTATCG+AGG + chr1_3:4297602-4297621 Msa0098370:intron 25.0%
! GATTATGAAATCAGTTAAGA+AGG - chr1_3:4297728-4297747 None:intergenic 25.0%
! ATACAAGTAAAAGAACACAA+AGG - chr1_3:4297757-4297776 None:intergenic 25.0%
!! TTTGTGTTCTTTTACTTGTA+TGG + chr1_3:4297756-4297775 Msa0098370:intron 25.0%
! ATCTAGTACGAGTATAAATA+AGG + chr1_3:4298128-4298147 Msa0098370:intron 25.0%
! TCTAGTACGAGTATAAATAA+GGG + chr1_3:4298129-4298148 Msa0098370:intron 25.0%
! GTACACTGTAAAAAAATCTA+AGG + chr1_3:4298469-4298488 Msa0098370:intron 25.0%
! AGTAATAGATAAGCATAATC+AGG - chr1_3:4299032-4299051 None:intergenic 25.0%
! TCAAAGTTTAAACAGAGAAT+TGG - chr1_3:4299152-4299171 None:intergenic 25.0%
! TAACTGTAATGAAATTCAGA+TGG - chr1_3:4299317-4299336 None:intergenic 25.0%
!! ATGAAAGTATATTGTTGAGT+AGG + chr1_3:4299391-4299410 Msa0098370:intron 25.0%
! TGATTCTCCTACATATATTA+GGG - chr1_3:4299481-4299500 None:intergenic 25.0%
! TTGATTCTCCTACATATATT+AGG - chr1_3:4299482-4299501 None:intergenic 25.0%
!! GATTTATGAAGAGTATAATG+TGG - chr1_3:4299723-4299742 None:intergenic 25.0%
!! TCTTTGGGTTTAATTATGTT+TGG + chr1_3:4299821-4299840 Msa0098370:intron 25.0%
! TAATTAAGTGTTAAACTCAC+AGG + chr1_3:4299888-4299907 Msa0098370:intron 25.0%
! ATTATCTCTTTGTAAGCATT+TGG - chr1_3:4300012-4300031 None:intergenic 25.0%
! TGTTTAAGCAGTAAAAAGTA+AGG - chr1_3:4300070-4300089 None:intergenic 25.0%
! CCCTAACATAAAAAAAAAAC+TGG + chr1_3:4300365-4300384 Msa0098370:intron 25.0%
!!! ATGAACAATTTCCATTTTTC+TGG - chr1_3:4300510-4300529 None:intergenic 25.0%
! TATCAAACAAAAAATCTTCC+CGG - chr1_3:4300560-4300579 None:intergenic 25.0%
! TAATAATACAGAAGCAATTC+AGG + chr1_3:4300785-4300804 Msa0098370:intron 25.0%
! AATGAATAAAAAAACGTTCC+AGG - chr1_3:4301080-4301099 None:intergenic 25.0%
! TAAAAACAAGAGAAAGAGAA+AGG + chr1_3:4296610-4296629 Msa0098370:CDS 25.0%
!! CATTATTAGGGTTTGAAATT+GGG - chr1_3:4296687-4296706 None:intergenic 25.0%
! TAACACATTCAGCATTATTA+GGG - chr1_3:4296699-4296718 None:intergenic 25.0%
! ATAACACATTCAGCATTATT+AGG - chr1_3:4296700-4296719 None:intergenic 25.0%
!! TGATTAAATGTAATGGAACA+AGG - chr1_3:4296854-4296873 None:intergenic 25.0%
!!! ATGAATTATGTGCTTTTTTC+AGG + chr1_3:4296927-4296946 Msa0098370:intron 25.0%
! GAAAGAGAAAAAATCATACA+TGG + chr1_3:4296976-4296995 Msa0098370:CDS 25.0%
!! TACAAAGTTGTTTCAAATTG+TGG - chr1_3:4297184-4297203 None:intergenic 25.0%
!! TTGTTTTCAGACATTCTAAA+TGG - chr1_3:4297219-4297238 None:intergenic 25.0%
! ATTATCAAACCAGTGTAAAA+AGG - chr1_3:4297436-4297455 None:intergenic 25.0%
! TGCTAAGAACTATTGATATT+TGG + chr1_3:4297488-4297507 Msa0098370:intron 25.0%
! GCTAAGAACTATTGATATTT+GGG + chr1_3:4297489-4297508 Msa0098370:intron 25.0%
! CTAAGAACTATTGATATTTG+GGG + chr1_3:4297490-4297509 Msa0098370:intron 25.0%
! TAAGAACTATTGATATTTGG+GGG + chr1_3:4297491-4297510 Msa0098370:intron 25.0%
!!! AATTCTTCTTATTTCTATCG+AGG + chr1_3:4297602-4297621 Msa0098370:intron 25.0%
! GATTATGAAATCAGTTAAGA+AGG - chr1_3:4297728-4297747 None:intergenic 25.0%
! ATACAAGTAAAAGAACACAA+AGG - chr1_3:4297757-4297776 None:intergenic 25.0%
!! TTTGTGTTCTTTTACTTGTA+TGG + chr1_3:4297756-4297775 Msa0098370:intron 25.0%
! ATCTAGTACGAGTATAAATA+AGG + chr1_3:4298128-4298147 Msa0098370:intron 25.0%
! TCTAGTACGAGTATAAATAA+GGG + chr1_3:4298129-4298148 Msa0098370:intron 25.0%
! GTACACTGTAAAAAAATCTA+AGG + chr1_3:4298469-4298488 Msa0098370:intron 25.0%
! AGTAATAGATAAGCATAATC+AGG - chr1_3:4299032-4299051 None:intergenic 25.0%
! TCAAAGTTTAAACAGAGAAT+TGG - chr1_3:4299152-4299171 None:intergenic 25.0%
! TAACTGTAATGAAATTCAGA+TGG - chr1_3:4299317-4299336 None:intergenic 25.0%
!! ATGAAAGTATATTGTTGAGT+AGG + chr1_3:4299391-4299410 Msa0098370:intron 25.0%
! TGATTCTCCTACATATATTA+GGG - chr1_3:4299481-4299500 None:intergenic 25.0%
! TTGATTCTCCTACATATATT+AGG - chr1_3:4299482-4299501 None:intergenic 25.0%
!! GATTTATGAAGAGTATAATG+TGG - chr1_3:4299723-4299742 None:intergenic 25.0%
!! TCTTTGGGTTTAATTATGTT+TGG + chr1_3:4299821-4299840 Msa0098370:intron 25.0%
! TAATTAAGTGTTAAACTCAC+AGG + chr1_3:4299888-4299907 Msa0098370:intron 25.0%
! ATTATCTCTTTGTAAGCATT+TGG - chr1_3:4300012-4300031 None:intergenic 25.0%
! TGTTTAAGCAGTAAAAAGTA+AGG - chr1_3:4300070-4300089 None:intergenic 25.0%
! CCCTAACATAAAAAAAAAAC+TGG + chr1_3:4300365-4300384 Msa0098370:intron 25.0%
!!! ATGAACAATTTCCATTTTTC+TGG - chr1_3:4300510-4300529 None:intergenic 25.0%
! TATCAAACAAAAAATCTTCC+CGG - chr1_3:4300560-4300579 None:intergenic 25.0%
! TAATAATACAGAAGCAATTC+AGG + chr1_3:4300785-4300804 Msa0098370:intron 25.0%
! AATGAATAAAAAAACGTTCC+AGG - chr1_3:4301080-4301099 None:intergenic 25.0%
! TAAAAACAAGAGAAAGAGAA+AGG + chr1_3:4296610-4296629 Msa0098370:CDS 25.0%
!! CATTATTAGGGTTTGAAATT+GGG - chr1_3:4296687-4296706 None:intergenic 25.0%
! TAACACATTCAGCATTATTA+GGG - chr1_3:4296699-4296718 None:intergenic 25.0%
! ATAACACATTCAGCATTATT+AGG - chr1_3:4296700-4296719 None:intergenic 25.0%
!! TGATTAAATGTAATGGAACA+AGG - chr1_3:4296854-4296873 None:intergenic 25.0%
!!! ATGAATTATGTGCTTTTTTC+AGG + chr1_3:4296927-4296946 Msa0098370:intron 25.0%
! GAAAGAGAAAAAATCATACA+TGG + chr1_3:4296976-4296995 Msa0098370:CDS 25.0%
!! TACAAAGTTGTTTCAAATTG+TGG - chr1_3:4297184-4297203 None:intergenic 25.0%
!! TTGTTTTCAGACATTCTAAA+TGG - chr1_3:4297219-4297238 None:intergenic 25.0%
! ATTATCAAACCAGTGTAAAA+AGG - chr1_3:4297436-4297455 None:intergenic 25.0%
! TGCTAAGAACTATTGATATT+TGG + chr1_3:4297488-4297507 Msa0098370:intron 25.0%
! GCTAAGAACTATTGATATTT+GGG + chr1_3:4297489-4297508 Msa0098370:intron 25.0%
! CTAAGAACTATTGATATTTG+GGG + chr1_3:4297490-4297509 Msa0098370:intron 25.0%
! TAAGAACTATTGATATTTGG+GGG + chr1_3:4297491-4297510 Msa0098370:intron 25.0%
!!! AATTCTTCTTATTTCTATCG+AGG + chr1_3:4297602-4297621 Msa0098370:intron 25.0%
! GATTATGAAATCAGTTAAGA+AGG - chr1_3:4297728-4297747 None:intergenic 25.0%
! ATACAAGTAAAAGAACACAA+AGG - chr1_3:4297757-4297776 None:intergenic 25.0%
!! TTTGTGTTCTTTTACTTGTA+TGG + chr1_3:4297756-4297775 Msa0098370:intron 25.0%
! ATCTAGTACGAGTATAAATA+AGG + chr1_3:4298128-4298147 Msa0098370:intron 25.0%
! TCTAGTACGAGTATAAATAA+GGG + chr1_3:4298129-4298148 Msa0098370:intron 25.0%
! GTACACTGTAAAAAAATCTA+AGG + chr1_3:4298469-4298488 Msa0098370:intron 25.0%
! AGTAATAGATAAGCATAATC+AGG - chr1_3:4299032-4299051 None:intergenic 25.0%
! TCAAAGTTTAAACAGAGAAT+TGG - chr1_3:4299152-4299171 None:intergenic 25.0%
! TAACTGTAATGAAATTCAGA+TGG - chr1_3:4299317-4299336 None:intergenic 25.0%
!! ATGAAAGTATATTGTTGAGT+AGG + chr1_3:4299391-4299410 Msa0098370:intron 25.0%
! TGATTCTCCTACATATATTA+GGG - chr1_3:4299481-4299500 None:intergenic 25.0%
! TTGATTCTCCTACATATATT+AGG - chr1_3:4299482-4299501 None:intergenic 25.0%
!! GATTTATGAAGAGTATAATG+TGG - chr1_3:4299723-4299742 None:intergenic 25.0%
!! TCTTTGGGTTTAATTATGTT+TGG + chr1_3:4299821-4299840 Msa0098370:intron 25.0%
! TAATTAAGTGTTAAACTCAC+AGG + chr1_3:4299888-4299907 Msa0098370:intron 25.0%
! ATTATCTCTTTGTAAGCATT+TGG - chr1_3:4300012-4300031 None:intergenic 25.0%
! TGTTTAAGCAGTAAAAAGTA+AGG - chr1_3:4300070-4300089 None:intergenic 25.0%
! CCCTAACATAAAAAAAAAAC+TGG + chr1_3:4300365-4300384 Msa0098370:intron 25.0%
!!! ATGAACAATTTCCATTTTTC+TGG - chr1_3:4300510-4300529 None:intergenic 25.0%
! TATCAAACAAAAAATCTTCC+CGG - chr1_3:4300560-4300579 None:intergenic 25.0%
! TAATAATACAGAAGCAATTC+AGG + chr1_3:4300785-4300804 Msa0098370:intron 25.0%
! AATGAATAAAAAAACGTTCC+AGG - chr1_3:4301080-4301099 None:intergenic 25.0%
! TTACTAACCGTTTGGAATTT+GGG + chr1_3:4296371-4296390 Msa0098370:five_prime_UTR 30.0%
CAAAACCTCTCAGTAAAAAT+CGG + chr1_3:4296582-4296601 Msa0098370:CDS 30.0%
! GCATTATTAGGGTTTGAAAT+TGG - chr1_3:4296688-4296707 None:intergenic 30.0%
!! CTGTTTTCAGCTTATTTTCA+GGG + chr1_3:4296818-4296837 Msa0098370:intron 30.0%
AGATGAAAATCAACATTGCA+AGG - chr1_3:4297077-4297096 None:intergenic 30.0%
! TGATTTTCATCTTGAATGCA+TGG + chr1_3:4297085-4297104 Msa0098370:intron 30.0%
! GTTTGATAATTCTGAATCCT+CGG + chr1_3:4297446-4297465 Msa0098370:intron 30.0%
TTAGGAGAATAGACATGTAT+TGG - chr1_3:4297563-4297582 None:intergenic 30.0%
CGATAAGAATGATACGTATT+TGG + chr1_3:4297632-4297651 Msa0098370:intron 30.0%
TAAGAATGATACGTATTTGG+TGG + chr1_3:4297635-4297654 Msa0098370:intron 30.0%
AAAACCCAACAACATTTGTA+AGG - chr1_3:4297959-4297978 None:intergenic 30.0%
!!! TTGTTGGGTTTTTTCATAGA+TGG + chr1_3:4297967-4297986 Msa0098370:intron 30.0%
AATAATAAGGACTTGGGAAA+AGG - chr1_3:4298256-4298275 None:intergenic 30.0%
TAAGAATGTGAGACCAATTA+TGG + chr1_3:4298599-4298618 Msa0098370:intron 30.0%
AAGAATGTGAGACCAATTAT+GGG + chr1_3:4298600-4298619 Msa0098370:intron 30.0%
TGTTGAAATGATAAGGCTTT+AGG - chr1_3:4298765-4298784 None:intergenic 30.0%
AAGCATCTGTTGAAATGATA+AGG - chr1_3:4298772-4298791 None:intergenic 30.0%
!! TTTTCTAAGAAGAGGTGAAA+AGG - chr1_3:4298969-4298988 None:intergenic 30.0%
! TTTTCACCTCTTCTTAGAAA+AGG + chr1_3:4298968-4298987 Msa0098370:intron 30.0%
TTGTATTGTATGGTCTTCTA+GGG - chr1_3:4299055-4299074 None:intergenic 30.0%
CTGTAAATGGTTGTATTGTA+TGG - chr1_3:4299065-4299084 None:intergenic 30.0%
AACACATCAGAAACTGTAAA+TGG - chr1_3:4299078-4299097 None:intergenic 30.0%
AGTTTAAACAGAGAATTGGA+AGG - chr1_3:4299148-4299167 None:intergenic 30.0%
TGTTTAAACTTTGATGTTCC+TGG + chr1_3:4299158-4299177 Msa0098370:intron 30.0%
TTTCTCTCATATAAACAGAG+CGG + chr1_3:4299233-4299252 Msa0098370:intron 30.0%
!!! TCAATTTTGGCTTACTTTGT+TGG - chr1_3:4299259-4299278 None:intergenic 30.0%
AGTAGTAAAGGAACAATTGA+TGG + chr1_3:4299415-4299434 Msa0098370:intron 30.0%
! AGAATCAAACTGAAGGTTTT+TGG + chr1_3:4299494-4299513 Msa0098370:intron 30.0%
! ATCTAAAATATTGTTGGACG+AGG + chr1_3:4299522-4299541 Msa0098370:intron 30.0%
! TCTAAAATATTGTTGGACGA+GGG + chr1_3:4299523-4299542 Msa0098370:intron 30.0%
GCAAGTACAAAATTCCTAAA+GGG - chr1_3:4299570-4299589 None:intergenic 30.0%
AGCAAGTACAAAATTCCTAA+AGG - chr1_3:4299571-4299590 None:intergenic 30.0%
ATTTGTCCAATGAACGTATT+AGG + chr1_3:4299631-4299650 Msa0098370:intron 30.0%
CTAATACCTAATACGTTCAT+TGG - chr1_3:4299640-4299659 None:intergenic 30.0%
ATACTCTTCATAAATCATGG+TGG + chr1_3:4299727-4299746 Msa0098370:intron 30.0%
AAAACAACTGAACTTGTCTT+TGG + chr1_3:4299805-4299824 Msa0098370:intron 30.0%
AAACAACTGAACTTGTCTTT+GGG + chr1_3:4299806-4299825 Msa0098370:intron 30.0%
!!! CTTTACTCTAATGGGTTTTA+AGG + chr1_3:4300316-4300335 Msa0098370:intron 30.0%
AAAACTGGACAAAATATAGC+TGG + chr1_3:4300380-4300399 Msa0098370:intron 30.0%
! TTAAGCATACAACAGTCTTT+TGG + chr1_3:4300437-4300456 Msa0098370:intron 30.0%
! TTCATGACTTTTGAATTAGC+AGG + chr1_3:4300525-4300544 Msa0098370:intron 30.0%
! GCTACTATCTTTTACGAAAA+AGG - chr1_3:4300629-4300648 None:intergenic 30.0%
GACTATATATAAGAGCAACT+GGG - chr1_3:4300677-4300696 None:intergenic 30.0%
TGACTATATATAAGAGCAAC+TGG - chr1_3:4300678-4300697 None:intergenic 30.0%
TGTTGTCACAAGCAAAAATT+AGG - chr1_3:4301144-4301163 None:intergenic 30.0%
TCTTTCATGCAAAATCCAAA+TGG - chr1_3:4301192-4301211 None:intergenic 30.0%
ATTTGCAGTGTTCAAAAGAT+AGG + chr1_3:4301211-4301230 Msa0098370:three_prime_UTR 30.0%
! TTACTAACCGTTTGGAATTT+GGG + chr1_3:4296371-4296390 Msa0098370:five_prime_UTR 30.0%
CAAAACCTCTCAGTAAAAAT+CGG + chr1_3:4296582-4296601 Msa0098370:CDS 30.0%
! GCATTATTAGGGTTTGAAAT+TGG - chr1_3:4296688-4296707 None:intergenic 30.0%
!! CTGTTTTCAGCTTATTTTCA+GGG + chr1_3:4296818-4296837 Msa0098370:intron 30.0%
AGATGAAAATCAACATTGCA+AGG - chr1_3:4297077-4297096 None:intergenic 30.0%
! TGATTTTCATCTTGAATGCA+TGG + chr1_3:4297085-4297104 Msa0098370:intron 30.0%
! GTTTGATAATTCTGAATCCT+CGG + chr1_3:4297446-4297465 Msa0098370:intron 30.0%
TTAGGAGAATAGACATGTAT+TGG - chr1_3:4297563-4297582 None:intergenic 30.0%
CGATAAGAATGATACGTATT+TGG + chr1_3:4297632-4297651 Msa0098370:intron 30.0%
TAAGAATGATACGTATTTGG+TGG + chr1_3:4297635-4297654 Msa0098370:intron 30.0%
AAAACCCAACAACATTTGTA+AGG - chr1_3:4297959-4297978 None:intergenic 30.0%
!!! TTGTTGGGTTTTTTCATAGA+TGG + chr1_3:4297967-4297986 Msa0098370:intron 30.0%
AATAATAAGGACTTGGGAAA+AGG - chr1_3:4298256-4298275 None:intergenic 30.0%
TAAGAATGTGAGACCAATTA+TGG + chr1_3:4298599-4298618 Msa0098370:intron 30.0%
AAGAATGTGAGACCAATTAT+GGG + chr1_3:4298600-4298619 Msa0098370:intron 30.0%
TGTTGAAATGATAAGGCTTT+AGG - chr1_3:4298765-4298784 None:intergenic 30.0%
AAGCATCTGTTGAAATGATA+AGG - chr1_3:4298772-4298791 None:intergenic 30.0%
!! TTTTCTAAGAAGAGGTGAAA+AGG - chr1_3:4298969-4298988 None:intergenic 30.0%
! TTTTCACCTCTTCTTAGAAA+AGG + chr1_3:4298968-4298987 Msa0098370:intron 30.0%
TTGTATTGTATGGTCTTCTA+GGG - chr1_3:4299055-4299074 None:intergenic 30.0%
CTGTAAATGGTTGTATTGTA+TGG - chr1_3:4299065-4299084 None:intergenic 30.0%
AACACATCAGAAACTGTAAA+TGG - chr1_3:4299078-4299097 None:intergenic 30.0%
AGTTTAAACAGAGAATTGGA+AGG - chr1_3:4299148-4299167 None:intergenic 30.0%
TGTTTAAACTTTGATGTTCC+TGG + chr1_3:4299158-4299177 Msa0098370:intron 30.0%
TTTCTCTCATATAAACAGAG+CGG + chr1_3:4299233-4299252 Msa0098370:intron 30.0%
!!! TCAATTTTGGCTTACTTTGT+TGG - chr1_3:4299259-4299278 None:intergenic 30.0%
AGTAGTAAAGGAACAATTGA+TGG + chr1_3:4299415-4299434 Msa0098370:intron 30.0%
! AGAATCAAACTGAAGGTTTT+TGG + chr1_3:4299494-4299513 Msa0098370:intron 30.0%
! ATCTAAAATATTGTTGGACG+AGG + chr1_3:4299522-4299541 Msa0098370:intron 30.0%
! TCTAAAATATTGTTGGACGA+GGG + chr1_3:4299523-4299542 Msa0098370:intron 30.0%
GCAAGTACAAAATTCCTAAA+GGG - chr1_3:4299570-4299589 None:intergenic 30.0%
AGCAAGTACAAAATTCCTAA+AGG - chr1_3:4299571-4299590 None:intergenic 30.0%
ATTTGTCCAATGAACGTATT+AGG + chr1_3:4299631-4299650 Msa0098370:intron 30.0%
CTAATACCTAATACGTTCAT+TGG - chr1_3:4299640-4299659 None:intergenic 30.0%
ATACTCTTCATAAATCATGG+TGG + chr1_3:4299727-4299746 Msa0098370:intron 30.0%
AAAACAACTGAACTTGTCTT+TGG + chr1_3:4299805-4299824 Msa0098370:intron 30.0%
AAACAACTGAACTTGTCTTT+GGG + chr1_3:4299806-4299825 Msa0098370:intron 30.0%
!!! CTTTACTCTAATGGGTTTTA+AGG + chr1_3:4300316-4300335 Msa0098370:intron 30.0%
AAAACTGGACAAAATATAGC+TGG + chr1_3:4300380-4300399 Msa0098370:intron 30.0%
! TTAAGCATACAACAGTCTTT+TGG + chr1_3:4300437-4300456 Msa0098370:intron 30.0%
! TTCATGACTTTTGAATTAGC+AGG + chr1_3:4300525-4300544 Msa0098370:intron 30.0%
! GCTACTATCTTTTACGAAAA+AGG - chr1_3:4300629-4300648 None:intergenic 30.0%
GACTATATATAAGAGCAACT+GGG - chr1_3:4300677-4300696 None:intergenic 30.0%
TGACTATATATAAGAGCAAC+TGG - chr1_3:4300678-4300697 None:intergenic 30.0%
TGTTGTCACAAGCAAAAATT+AGG - chr1_3:4301144-4301163 None:intergenic 30.0%
TCTTTCATGCAAAATCCAAA+TGG - chr1_3:4301192-4301211 None:intergenic 30.0%
ATTTGCAGTGTTCAAAAGAT+AGG + chr1_3:4301211-4301230 Msa0098370:three_prime_UTR 30.0%
! TTACTAACCGTTTGGAATTT+GGG + chr1_3:4296371-4296390 Msa0098370:five_prime_UTR 30.0%
CAAAACCTCTCAGTAAAAAT+CGG + chr1_3:4296582-4296601 Msa0098370:CDS 30.0%
! GCATTATTAGGGTTTGAAAT+TGG - chr1_3:4296688-4296707 None:intergenic 30.0%
!! CTGTTTTCAGCTTATTTTCA+GGG + chr1_3:4296818-4296837 Msa0098370:intron 30.0%
AGATGAAAATCAACATTGCA+AGG - chr1_3:4297077-4297096 None:intergenic 30.0%
! TGATTTTCATCTTGAATGCA+TGG + chr1_3:4297085-4297104 Msa0098370:intron 30.0%
! GTTTGATAATTCTGAATCCT+CGG + chr1_3:4297446-4297465 Msa0098370:intron 30.0%
TTAGGAGAATAGACATGTAT+TGG - chr1_3:4297563-4297582 None:intergenic 30.0%
CGATAAGAATGATACGTATT+TGG + chr1_3:4297632-4297651 Msa0098370:intron 30.0%
TAAGAATGATACGTATTTGG+TGG + chr1_3:4297635-4297654 Msa0098370:intron 30.0%
AAAACCCAACAACATTTGTA+AGG - chr1_3:4297959-4297978 None:intergenic 30.0%
!!! TTGTTGGGTTTTTTCATAGA+TGG + chr1_3:4297967-4297986 Msa0098370:intron 30.0%
AATAATAAGGACTTGGGAAA+AGG - chr1_3:4298256-4298275 None:intergenic 30.0%
TAAGAATGTGAGACCAATTA+TGG + chr1_3:4298599-4298618 Msa0098370:intron 30.0%
AAGAATGTGAGACCAATTAT+GGG + chr1_3:4298600-4298619 Msa0098370:intron 30.0%
TGTTGAAATGATAAGGCTTT+AGG - chr1_3:4298765-4298784 None:intergenic 30.0%
AAGCATCTGTTGAAATGATA+AGG - chr1_3:4298772-4298791 None:intergenic 30.0%
!! TTTTCTAAGAAGAGGTGAAA+AGG - chr1_3:4298969-4298988 None:intergenic 30.0%
! TTTTCACCTCTTCTTAGAAA+AGG + chr1_3:4298968-4298987 Msa0098370:intron 30.0%
TTGTATTGTATGGTCTTCTA+GGG - chr1_3:4299055-4299074 None:intergenic 30.0%
CTGTAAATGGTTGTATTGTA+TGG - chr1_3:4299065-4299084 None:intergenic 30.0%
AACACATCAGAAACTGTAAA+TGG - chr1_3:4299078-4299097 None:intergenic 30.0%
AGTTTAAACAGAGAATTGGA+AGG - chr1_3:4299148-4299167 None:intergenic 30.0%
TGTTTAAACTTTGATGTTCC+TGG + chr1_3:4299158-4299177 Msa0098370:intron 30.0%
TTTCTCTCATATAAACAGAG+CGG + chr1_3:4299233-4299252 Msa0098370:intron 30.0%
!!! TCAATTTTGGCTTACTTTGT+TGG - chr1_3:4299259-4299278 None:intergenic 30.0%
AGTAGTAAAGGAACAATTGA+TGG + chr1_3:4299415-4299434 Msa0098370:intron 30.0%
! AGAATCAAACTGAAGGTTTT+TGG + chr1_3:4299494-4299513 Msa0098370:intron 30.0%
! ATCTAAAATATTGTTGGACG+AGG + chr1_3:4299522-4299541 Msa0098370:intron 30.0%
! TCTAAAATATTGTTGGACGA+GGG + chr1_3:4299523-4299542 Msa0098370:intron 30.0%
GCAAGTACAAAATTCCTAAA+GGG - chr1_3:4299570-4299589 None:intergenic 30.0%
AGCAAGTACAAAATTCCTAA+AGG - chr1_3:4299571-4299590 None:intergenic 30.0%
ATTTGTCCAATGAACGTATT+AGG + chr1_3:4299631-4299650 Msa0098370:intron 30.0%
CTAATACCTAATACGTTCAT+TGG - chr1_3:4299640-4299659 None:intergenic 30.0%
ATACTCTTCATAAATCATGG+TGG + chr1_3:4299727-4299746 Msa0098370:intron 30.0%
AAAACAACTGAACTTGTCTT+TGG + chr1_3:4299805-4299824 Msa0098370:intron 30.0%
AAACAACTGAACTTGTCTTT+GGG + chr1_3:4299806-4299825 Msa0098370:intron 30.0%
!!! CTTTACTCTAATGGGTTTTA+AGG + chr1_3:4300316-4300335 Msa0098370:intron 30.0%
AAAACTGGACAAAATATAGC+TGG + chr1_3:4300380-4300399 Msa0098370:intron 30.0%
! TTAAGCATACAACAGTCTTT+TGG + chr1_3:4300437-4300456 Msa0098370:intron 30.0%
! TTCATGACTTTTGAATTAGC+AGG + chr1_3:4300525-4300544 Msa0098370:intron 30.0%
! GCTACTATCTTTTACGAAAA+AGG - chr1_3:4300629-4300648 None:intergenic 30.0%
GACTATATATAAGAGCAACT+GGG - chr1_3:4300677-4300696 None:intergenic 30.0%
TGACTATATATAAGAGCAAC+TGG - chr1_3:4300678-4300697 None:intergenic 30.0%
TGTTGTCACAAGCAAAAATT+AGG - chr1_3:4301144-4301163 None:intergenic 30.0%
TCTTTCATGCAAAATCCAAA+TGG - chr1_3:4301192-4301211 None:intergenic 30.0%
ATTTGCAGTGTTCAAAAGAT+AGG + chr1_3:4301211-4301230 Msa0098370:three_prime_UTR 30.0%
! TTACTAACCGTTTGGAATTT+GGG + chr1_3:4296371-4296390 Msa0098370:five_prime_UTR 30.0%
CAAAACCTCTCAGTAAAAAT+CGG + chr1_3:4296582-4296601 Msa0098370:CDS 30.0%
! GCATTATTAGGGTTTGAAAT+TGG - chr1_3:4296688-4296707 None:intergenic 30.0%
!! CTGTTTTCAGCTTATTTTCA+GGG + chr1_3:4296818-4296837 Msa0098370:intron 30.0%
AGATGAAAATCAACATTGCA+AGG - chr1_3:4297077-4297096 None:intergenic 30.0%
! TGATTTTCATCTTGAATGCA+TGG + chr1_3:4297085-4297104 Msa0098370:intron 30.0%
! GTTTGATAATTCTGAATCCT+CGG + chr1_3:4297446-4297465 Msa0098370:intron 30.0%
TTAGGAGAATAGACATGTAT+TGG - chr1_3:4297563-4297582 None:intergenic 30.0%
CGATAAGAATGATACGTATT+TGG + chr1_3:4297632-4297651 Msa0098370:intron 30.0%
TAAGAATGATACGTATTTGG+TGG + chr1_3:4297635-4297654 Msa0098370:intron 30.0%
AAAACCCAACAACATTTGTA+AGG - chr1_3:4297959-4297978 None:intergenic 30.0%
!!! TTGTTGGGTTTTTTCATAGA+TGG + chr1_3:4297967-4297986 Msa0098370:intron 30.0%
AATAATAAGGACTTGGGAAA+AGG - chr1_3:4298256-4298275 None:intergenic 30.0%
TAAGAATGTGAGACCAATTA+TGG + chr1_3:4298599-4298618 Msa0098370:intron 30.0%
AAGAATGTGAGACCAATTAT+GGG + chr1_3:4298600-4298619 Msa0098370:intron 30.0%
TGTTGAAATGATAAGGCTTT+AGG - chr1_3:4298765-4298784 None:intergenic 30.0%
AAGCATCTGTTGAAATGATA+AGG - chr1_3:4298772-4298791 None:intergenic 30.0%
!! TTTTCTAAGAAGAGGTGAAA+AGG - chr1_3:4298969-4298988 None:intergenic 30.0%
! TTTTCACCTCTTCTTAGAAA+AGG + chr1_3:4298968-4298987 Msa0098370:intron 30.0%
TTGTATTGTATGGTCTTCTA+GGG - chr1_3:4299055-4299074 None:intergenic 30.0%
CTGTAAATGGTTGTATTGTA+TGG - chr1_3:4299065-4299084 None:intergenic 30.0%
AACACATCAGAAACTGTAAA+TGG - chr1_3:4299078-4299097 None:intergenic 30.0%
AGTTTAAACAGAGAATTGGA+AGG - chr1_3:4299148-4299167 None:intergenic 30.0%
TGTTTAAACTTTGATGTTCC+TGG + chr1_3:4299158-4299177 Msa0098370:intron 30.0%
TTTCTCTCATATAAACAGAG+CGG + chr1_3:4299233-4299252 Msa0098370:intron 30.0%
!!! TCAATTTTGGCTTACTTTGT+TGG - chr1_3:4299259-4299278 None:intergenic 30.0%
AGTAGTAAAGGAACAATTGA+TGG + chr1_3:4299415-4299434 Msa0098370:intron 30.0%
! AGAATCAAACTGAAGGTTTT+TGG + chr1_3:4299494-4299513 Msa0098370:intron 30.0%
! ATCTAAAATATTGTTGGACG+AGG + chr1_3:4299522-4299541 Msa0098370:intron 30.0%
! TCTAAAATATTGTTGGACGA+GGG + chr1_3:4299523-4299542 Msa0098370:intron 30.0%
GCAAGTACAAAATTCCTAAA+GGG - chr1_3:4299570-4299589 None:intergenic 30.0%
AGCAAGTACAAAATTCCTAA+AGG - chr1_3:4299571-4299590 None:intergenic 30.0%
ATTTGTCCAATGAACGTATT+AGG + chr1_3:4299631-4299650 Msa0098370:intron 30.0%
CTAATACCTAATACGTTCAT+TGG - chr1_3:4299640-4299659 None:intergenic 30.0%
ATACTCTTCATAAATCATGG+TGG + chr1_3:4299727-4299746 Msa0098370:intron 30.0%
AAAACAACTGAACTTGTCTT+TGG + chr1_3:4299805-4299824 Msa0098370:intron 30.0%
AAACAACTGAACTTGTCTTT+GGG + chr1_3:4299806-4299825 Msa0098370:intron 30.0%
!!! CTTTACTCTAATGGGTTTTA+AGG + chr1_3:4300316-4300335 Msa0098370:intron 30.0%
AAAACTGGACAAAATATAGC+TGG + chr1_3:4300380-4300399 Msa0098370:intron 30.0%
! TTAAGCATACAACAGTCTTT+TGG + chr1_3:4300437-4300456 Msa0098370:intron 30.0%
! TTCATGACTTTTGAATTAGC+AGG + chr1_3:4300525-4300544 Msa0098370:intron 30.0%
! GCTACTATCTTTTACGAAAA+AGG - chr1_3:4300629-4300648 None:intergenic 30.0%
GACTATATATAAGAGCAACT+GGG - chr1_3:4300677-4300696 None:intergenic 30.0%
TGACTATATATAAGAGCAAC+TGG - chr1_3:4300678-4300697 None:intergenic 30.0%
TGTTGTCACAAGCAAAAATT+AGG - chr1_3:4301144-4301163 None:intergenic 30.0%
TCTTTCATGCAAAATCCAAA+TGG - chr1_3:4301192-4301211 None:intergenic 30.0%
ATTTGCAGTGTTCAAAAGAT+AGG + chr1_3:4301211-4301230 Msa0098370:three_prime_UTR 30.0%
! GTTACTAACCGTTTGGAATT+TGG + chr1_3:4296370-4296389 Msa0098370:five_prime_UTR 35.0%
GTCTTCTTCTTCGTAGTTAA+TGG - chr1_3:4296426-4296445 None:intergenic 35.0%
GAACAAGACCATAATCGAAA+CGG + chr1_3:4296494-4296513 Msa0098370:CDS 35.0%
AATGAGATTATGATCCTGTG+TGG - chr1_3:4296528-4296547 None:intergenic 35.0%
! CGATTTTTACTGAGAGGTTT+TGG - chr1_3:4296584-4296603 None:intergenic 35.0%
AAGAGAAAGAGAAAGGCTTT+AGG + chr1_3:4296617-4296636 Msa0098370:CDS 35.0%
AGAAACCTGTCAATGTTGAT+GGG - chr1_3:4296656-4296675 None:intergenic 35.0%
AAGAAACCTGTCAATGTTGA+TGG - chr1_3:4296657-4296676 None:intergenic 35.0%
TAATGCTGAATGTGTTATGC+TGG + chr1_3:4296702-4296721 Msa0098370:intron 35.0%
!! TTATGCTGGTTGTGTTTTAC+TGG + chr1_3:4296716-4296735 Msa0098370:intron 35.0%
!! GCTGTTTTCAGCTTATTTTC+AGG + chr1_3:4296817-4296836 Msa0098370:intron 35.0%
TACATGGTATATACAGCTGT+AGG + chr1_3:4296992-4297011 Msa0098370:CDS 35.0%
GTCTAAATTCGTGTAGGATA+GGG + chr1_3:4297107-4297126 Msa0098370:intron 35.0%
TTTGACGAAGCAAAATCAAG+AGG - chr1_3:4297336-4297355 None:intergenic 35.0%
! TGAATGTCAGAGCATTACTT+GGG - chr1_3:4297364-4297383 None:intergenic 35.0%
! TTGAATGTCAGAGCATTACT+TGG - chr1_3:4297365-4297384 None:intergenic 35.0%
AAAACAGGATGCATACGTAA+TGG - chr1_3:4297400-4297419 None:intergenic 35.0%
! ATGCATCCTGTTTTACTTGT+AGG + chr1_3:4297406-4297425 Msa0098370:intron 35.0%
! GTGTTCTTTTACTTGTATGG+AGG + chr1_3:4297759-4297778 Msa0098370:intron 35.0%
! TATTTTGTGGTGCAAGTTTG+TGG + chr1_3:4297805-4297824 Msa0098370:intron 35.0%
TCCAACCTTACAAATGTTGT+TGG + chr1_3:4297951-4297970 Msa0098370:intron 35.0%
CCAACCTTACAAATGTTGTT+GGG + chr1_3:4297952-4297971 Msa0098370:intron 35.0%
GTACGAGTATAAATAAGGGA+TGG + chr1_3:4298133-4298152 Msa0098370:intron 35.0%
GAAATGTTTCCTTGCGAATT+TGG - chr1_3:4298341-4298360 None:intergenic 35.0%
!! GCATACTAAAGAAGCATTGT+TGG + chr1_3:4298540-4298559 Msa0098370:intron 35.0%
! GTAAAGTGAGTGCTGTATAA+TGG - chr1_3:4298570-4298589 None:intergenic 35.0%
TTTCATCGTTGTCCCATAAT+TGG - chr1_3:4298615-4298634 None:intergenic 35.0%
TCATTTCAACAGATGCTTTG+CGG + chr1_3:4298774-4298793 Msa0098370:intron 35.0%
! AATGCAACGCACATTTTACT+GGG - chr1_3:4298849-4298868 None:intergenic 35.0%
!! CTCTAACCTTTTCTAAGAAG+AGG - chr1_3:4298977-4298996 None:intergenic 35.0%
AGTTCAGATTCTACCTGATT+TGG + chr1_3:4298995-4299014 Msa0098370:intron 35.0%
AGATAAGCATAATCAGGTCA+AGG - chr1_3:4299026-4299045 None:intergenic 35.0%
GTTGTATTGTATGGTCTTCT+AGG - chr1_3:4299056-4299075 None:intergenic 35.0%
TGGTTAAAATCTGCAAGGTT+GGG - chr1_3:4299111-4299130 None:intergenic 35.0%
!! GTTTCTGGTTAAAATCTGCA+AGG - chr1_3:4299116-4299135 None:intergenic 35.0%
TGTTGAGTAGGTAGTAGTAA+AGG + chr1_3:4299403-4299422 Msa0098370:intron 35.0%
TAGACAGCCCTAATATATGT+AGG + chr1_3:4299471-4299490 Msa0098370:intron 35.0%
ATGTAGGAGAATCAAACTGA+AGG + chr1_3:4299487-4299506 Msa0098370:intron 35.0%
AAAGGGTGGCTTACAATATT+AGG - chr1_3:4299553-4299572 None:intergenic 35.0%
AATATTGTAAGCCACCCTTT+AGG + chr1_3:4299553-4299572 Msa0098370:intron 35.0%
AGTACAAAATTCCTAAAGGG+TGG - chr1_3:4299567-4299586 None:intergenic 35.0%
!!! CTTTTTAAAGCTGTCCGATT+TGG + chr1_3:4299848-4299867 Msa0098370:intron 35.0%
AAATTTGTGACGTGCCAAAT+CGG - chr1_3:4299865-4299884 None:intergenic 35.0%
GAAAAAAGCAAGAGAGTTTG+AGG + chr1_3:4300032-4300051 Msa0098370:CDS 35.0%
AGTAGACTAAGTGTGTGTTT+GGG + chr1_3:4300133-4300152 Msa0098370:intron 35.0%
GAAGTGAAGTGATTTCTGTT+TGG + chr1_3:4300208-4300227 Msa0098370:intron 35.0%
! AAAGGACTTTTGCATTGAGT+TGG - chr1_3:4300287-4300306 None:intergenic 35.0%
GGACTAAAAGCAACTTTACT+TGG + chr1_3:4300337-4300356 Msa0098370:intron 35.0%
CTCACAGTTGTAGAAAACAT+AGG - chr1_3:4300416-4300435 None:intergenic 35.0%
!! AGTTTTATGTTCATCTGCCT+CGG - chr1_3:4300483-4300502 None:intergenic 35.0%
AATTAGCAGGCAAAAAGTTC+CGG + chr1_3:4300538-4300557 Msa0098370:intron 35.0%
GTTTATCTTGTGATTGCTCA+TGG + chr1_3:4300753-4300772 Msa0098370:intron 35.0%
AAGTAGGATTGTCAGAAACA+TGG - chr1_3:4300897-4300916 None:intergenic 35.0%
CAAGATCAAGATAAACCACT+AGG + chr1_3:4300931-4300950 Msa0098370:CDS 35.0%
ATTCTCAATCTGTCATGAAC+AGG - chr1_3:4300976-4300995 None:intergenic 35.0%
!! ATGAAGGCTTTTTCCATTCA+AGG - chr1_3:4301057-4301076 None:intergenic 35.0%
AAAAAAACGTTCCAGGATGA+AGG - chr1_3:4301073-4301092 None:intergenic 35.0%
GTGTATGGAAAGAAGAAAGA+AGG - chr1_3:4301110-4301129 None:intergenic 35.0%
! TAGGCTGAAAAAGAAGTGTA+TGG - chr1_3:4301125-4301144 None:intergenic 35.0%
TAGAACGTTGTTGAAAAGTG+TGG + chr1_3:4301307-4301326 Msa0098370:three_prime_UTR 35.0%
! GTTACTAACCGTTTGGAATT+TGG + chr1_3:4296370-4296389 Msa0098370:five_prime_UTR 35.0%
GTCTTCTTCTTCGTAGTTAA+TGG - chr1_3:4296426-4296445 None:intergenic 35.0%
GAACAAGACCATAATCGAAA+CGG + chr1_3:4296494-4296513 Msa0098370:CDS 35.0%
AATGAGATTATGATCCTGTG+TGG - chr1_3:4296528-4296547 None:intergenic 35.0%
! CGATTTTTACTGAGAGGTTT+TGG - chr1_3:4296584-4296603 None:intergenic 35.0%
AAGAGAAAGAGAAAGGCTTT+AGG + chr1_3:4296617-4296636 Msa0098370:CDS 35.0%
AGAAACCTGTCAATGTTGAT+GGG - chr1_3:4296656-4296675 None:intergenic 35.0%
AAGAAACCTGTCAATGTTGA+TGG - chr1_3:4296657-4296676 None:intergenic 35.0%
TAATGCTGAATGTGTTATGC+TGG + chr1_3:4296702-4296721 Msa0098370:intron 35.0%
!! TTATGCTGGTTGTGTTTTAC+TGG + chr1_3:4296716-4296735 Msa0098370:intron 35.0%
!! GCTGTTTTCAGCTTATTTTC+AGG + chr1_3:4296817-4296836 Msa0098370:intron 35.0%
TACATGGTATATACAGCTGT+AGG + chr1_3:4296992-4297011 Msa0098370:CDS 35.0%
GTCTAAATTCGTGTAGGATA+GGG + chr1_3:4297107-4297126 Msa0098370:intron 35.0%
TTTGACGAAGCAAAATCAAG+AGG - chr1_3:4297336-4297355 None:intergenic 35.0%
! TGAATGTCAGAGCATTACTT+GGG - chr1_3:4297364-4297383 None:intergenic 35.0%
! TTGAATGTCAGAGCATTACT+TGG - chr1_3:4297365-4297384 None:intergenic 35.0%
AAAACAGGATGCATACGTAA+TGG - chr1_3:4297400-4297419 None:intergenic 35.0%
! ATGCATCCTGTTTTACTTGT+AGG + chr1_3:4297406-4297425 Msa0098370:intron 35.0%
! GTGTTCTTTTACTTGTATGG+AGG + chr1_3:4297759-4297778 Msa0098370:intron 35.0%
! TATTTTGTGGTGCAAGTTTG+TGG + chr1_3:4297805-4297824 Msa0098370:intron 35.0%
TCCAACCTTACAAATGTTGT+TGG + chr1_3:4297951-4297970 Msa0098370:intron 35.0%
CCAACCTTACAAATGTTGTT+GGG + chr1_3:4297952-4297971 Msa0098370:intron 35.0%
GTACGAGTATAAATAAGGGA+TGG + chr1_3:4298133-4298152 Msa0098370:intron 35.0%
GAAATGTTTCCTTGCGAATT+TGG - chr1_3:4298341-4298360 None:intergenic 35.0%
!! GCATACTAAAGAAGCATTGT+TGG + chr1_3:4298540-4298559 Msa0098370:intron 35.0%
! GTAAAGTGAGTGCTGTATAA+TGG - chr1_3:4298570-4298589 None:intergenic 35.0%
TTTCATCGTTGTCCCATAAT+TGG - chr1_3:4298615-4298634 None:intergenic 35.0%
TCATTTCAACAGATGCTTTG+CGG + chr1_3:4298774-4298793 Msa0098370:intron 35.0%
! AATGCAACGCACATTTTACT+GGG - chr1_3:4298849-4298868 None:intergenic 35.0%
!! CTCTAACCTTTTCTAAGAAG+AGG - chr1_3:4298977-4298996 None:intergenic 35.0%
AGTTCAGATTCTACCTGATT+TGG + chr1_3:4298995-4299014 Msa0098370:intron 35.0%
AGATAAGCATAATCAGGTCA+AGG - chr1_3:4299026-4299045 None:intergenic 35.0%
GTTGTATTGTATGGTCTTCT+AGG - chr1_3:4299056-4299075 None:intergenic 35.0%
TGGTTAAAATCTGCAAGGTT+GGG - chr1_3:4299111-4299130 None:intergenic 35.0%
!! GTTTCTGGTTAAAATCTGCA+AGG - chr1_3:4299116-4299135 None:intergenic 35.0%
TGTTGAGTAGGTAGTAGTAA+AGG + chr1_3:4299403-4299422 Msa0098370:intron 35.0%
TAGACAGCCCTAATATATGT+AGG + chr1_3:4299471-4299490 Msa0098370:intron 35.0%
ATGTAGGAGAATCAAACTGA+AGG + chr1_3:4299487-4299506 Msa0098370:intron 35.0%
AAAGGGTGGCTTACAATATT+AGG - chr1_3:4299553-4299572 None:intergenic 35.0%
AATATTGTAAGCCACCCTTT+AGG + chr1_3:4299553-4299572 Msa0098370:intron 35.0%
AGTACAAAATTCCTAAAGGG+TGG - chr1_3:4299567-4299586 None:intergenic 35.0%
!!! CTTTTTAAAGCTGTCCGATT+TGG + chr1_3:4299848-4299867 Msa0098370:intron 35.0%
AAATTTGTGACGTGCCAAAT+CGG - chr1_3:4299865-4299884 None:intergenic 35.0%
GAAAAAAGCAAGAGAGTTTG+AGG + chr1_3:4300032-4300051 Msa0098370:CDS 35.0%
AGTAGACTAAGTGTGTGTTT+GGG + chr1_3:4300133-4300152 Msa0098370:intron 35.0%
GAAGTGAAGTGATTTCTGTT+TGG + chr1_3:4300208-4300227 Msa0098370:intron 35.0%
! AAAGGACTTTTGCATTGAGT+TGG - chr1_3:4300287-4300306 None:intergenic 35.0%
GGACTAAAAGCAACTTTACT+TGG + chr1_3:4300337-4300356 Msa0098370:intron 35.0%
CTCACAGTTGTAGAAAACAT+AGG - chr1_3:4300416-4300435 None:intergenic 35.0%
!! AGTTTTATGTTCATCTGCCT+CGG - chr1_3:4300483-4300502 None:intergenic 35.0%
AATTAGCAGGCAAAAAGTTC+CGG + chr1_3:4300538-4300557 Msa0098370:intron 35.0%
GTTTATCTTGTGATTGCTCA+TGG + chr1_3:4300753-4300772 Msa0098370:intron 35.0%
AAGTAGGATTGTCAGAAACA+TGG - chr1_3:4300897-4300916 None:intergenic 35.0%
CAAGATCAAGATAAACCACT+AGG + chr1_3:4300931-4300950 Msa0098370:CDS 35.0%
ATTCTCAATCTGTCATGAAC+AGG - chr1_3:4300976-4300995 None:intergenic 35.0%
!! ATGAAGGCTTTTTCCATTCA+AGG - chr1_3:4301057-4301076 None:intergenic 35.0%
AAAAAAACGTTCCAGGATGA+AGG - chr1_3:4301073-4301092 None:intergenic 35.0%
GTGTATGGAAAGAAGAAAGA+AGG - chr1_3:4301110-4301129 None:intergenic 35.0%
! TAGGCTGAAAAAGAAGTGTA+TGG - chr1_3:4301125-4301144 None:intergenic 35.0%
TAGAACGTTGTTGAAAAGTG+TGG + chr1_3:4301307-4301326 Msa0098370:three_prime_UTR 35.0%
! GTTACTAACCGTTTGGAATT+TGG + chr1_3:4296370-4296389 Msa0098370:five_prime_UTR 35.0%
GTCTTCTTCTTCGTAGTTAA+TGG - chr1_3:4296426-4296445 None:intergenic 35.0%
GAACAAGACCATAATCGAAA+CGG + chr1_3:4296494-4296513 Msa0098370:CDS 35.0%
AATGAGATTATGATCCTGTG+TGG - chr1_3:4296528-4296547 None:intergenic 35.0%
! CGATTTTTACTGAGAGGTTT+TGG - chr1_3:4296584-4296603 None:intergenic 35.0%
AAGAGAAAGAGAAAGGCTTT+AGG + chr1_3:4296617-4296636 Msa0098370:CDS 35.0%
AGAAACCTGTCAATGTTGAT+GGG - chr1_3:4296656-4296675 None:intergenic 35.0%
AAGAAACCTGTCAATGTTGA+TGG - chr1_3:4296657-4296676 None:intergenic 35.0%
TAATGCTGAATGTGTTATGC+TGG + chr1_3:4296702-4296721 Msa0098370:intron 35.0%
!! TTATGCTGGTTGTGTTTTAC+TGG + chr1_3:4296716-4296735 Msa0098370:intron 35.0%
!! GCTGTTTTCAGCTTATTTTC+AGG + chr1_3:4296817-4296836 Msa0098370:intron 35.0%
TACATGGTATATACAGCTGT+AGG + chr1_3:4296992-4297011 Msa0098370:CDS 35.0%
GTCTAAATTCGTGTAGGATA+GGG + chr1_3:4297107-4297126 Msa0098370:intron 35.0%
TTTGACGAAGCAAAATCAAG+AGG - chr1_3:4297336-4297355 None:intergenic 35.0%
! TGAATGTCAGAGCATTACTT+GGG - chr1_3:4297364-4297383 None:intergenic 35.0%
! TTGAATGTCAGAGCATTACT+TGG - chr1_3:4297365-4297384 None:intergenic 35.0%
AAAACAGGATGCATACGTAA+TGG - chr1_3:4297400-4297419 None:intergenic 35.0%
! ATGCATCCTGTTTTACTTGT+AGG + chr1_3:4297406-4297425 Msa0098370:intron 35.0%
! GTGTTCTTTTACTTGTATGG+AGG + chr1_3:4297759-4297778 Msa0098370:intron 35.0%
! TATTTTGTGGTGCAAGTTTG+TGG + chr1_3:4297805-4297824 Msa0098370:intron 35.0%
TCCAACCTTACAAATGTTGT+TGG + chr1_3:4297951-4297970 Msa0098370:intron 35.0%
CCAACCTTACAAATGTTGTT+GGG + chr1_3:4297952-4297971 Msa0098370:intron 35.0%
GTACGAGTATAAATAAGGGA+TGG + chr1_3:4298133-4298152 Msa0098370:intron 35.0%
GAAATGTTTCCTTGCGAATT+TGG - chr1_3:4298341-4298360 None:intergenic 35.0%
!! GCATACTAAAGAAGCATTGT+TGG + chr1_3:4298540-4298559 Msa0098370:intron 35.0%
! GTAAAGTGAGTGCTGTATAA+TGG - chr1_3:4298570-4298589 None:intergenic 35.0%
TTTCATCGTTGTCCCATAAT+TGG - chr1_3:4298615-4298634 None:intergenic 35.0%
TCATTTCAACAGATGCTTTG+CGG + chr1_3:4298774-4298793 Msa0098370:intron 35.0%
! AATGCAACGCACATTTTACT+GGG - chr1_3:4298849-4298868 None:intergenic 35.0%
!! CTCTAACCTTTTCTAAGAAG+AGG - chr1_3:4298977-4298996 None:intergenic 35.0%
AGTTCAGATTCTACCTGATT+TGG + chr1_3:4298995-4299014 Msa0098370:intron 35.0%
AGATAAGCATAATCAGGTCA+AGG - chr1_3:4299026-4299045 None:intergenic 35.0%
GTTGTATTGTATGGTCTTCT+AGG - chr1_3:4299056-4299075 None:intergenic 35.0%
TGGTTAAAATCTGCAAGGTT+GGG - chr1_3:4299111-4299130 None:intergenic 35.0%
!! GTTTCTGGTTAAAATCTGCA+AGG - chr1_3:4299116-4299135 None:intergenic 35.0%
TGTTGAGTAGGTAGTAGTAA+AGG + chr1_3:4299403-4299422 Msa0098370:intron 35.0%
TAGACAGCCCTAATATATGT+AGG + chr1_3:4299471-4299490 Msa0098370:intron 35.0%
ATGTAGGAGAATCAAACTGA+AGG + chr1_3:4299487-4299506 Msa0098370:intron 35.0%
AAAGGGTGGCTTACAATATT+AGG - chr1_3:4299553-4299572 None:intergenic 35.0%
AATATTGTAAGCCACCCTTT+AGG + chr1_3:4299553-4299572 Msa0098370:intron 35.0%
AGTACAAAATTCCTAAAGGG+TGG - chr1_3:4299567-4299586 None:intergenic 35.0%
!!! CTTTTTAAAGCTGTCCGATT+TGG + chr1_3:4299848-4299867 Msa0098370:intron 35.0%
AAATTTGTGACGTGCCAAAT+CGG - chr1_3:4299865-4299884 None:intergenic 35.0%
GAAAAAAGCAAGAGAGTTTG+AGG + chr1_3:4300032-4300051 Msa0098370:CDS 35.0%
AGTAGACTAAGTGTGTGTTT+GGG + chr1_3:4300133-4300152 Msa0098370:intron 35.0%
GAAGTGAAGTGATTTCTGTT+TGG + chr1_3:4300208-4300227 Msa0098370:intron 35.0%
! AAAGGACTTTTGCATTGAGT+TGG - chr1_3:4300287-4300306 None:intergenic 35.0%
GGACTAAAAGCAACTTTACT+TGG + chr1_3:4300337-4300356 Msa0098370:intron 35.0%
CTCACAGTTGTAGAAAACAT+AGG - chr1_3:4300416-4300435 None:intergenic 35.0%
!! AGTTTTATGTTCATCTGCCT+CGG - chr1_3:4300483-4300502 None:intergenic 35.0%
AATTAGCAGGCAAAAAGTTC+CGG + chr1_3:4300538-4300557 Msa0098370:intron 35.0%
GTTTATCTTGTGATTGCTCA+TGG + chr1_3:4300753-4300772 Msa0098370:intron 35.0%
AAGTAGGATTGTCAGAAACA+TGG - chr1_3:4300897-4300916 None:intergenic 35.0%
CAAGATCAAGATAAACCACT+AGG + chr1_3:4300931-4300950 Msa0098370:CDS 35.0%
ATTCTCAATCTGTCATGAAC+AGG - chr1_3:4300976-4300995 None:intergenic 35.0%
!! ATGAAGGCTTTTTCCATTCA+AGG - chr1_3:4301057-4301076 None:intergenic 35.0%
AAAAAAACGTTCCAGGATGA+AGG - chr1_3:4301073-4301092 None:intergenic 35.0%
GTGTATGGAAAGAAGAAAGA+AGG - chr1_3:4301110-4301129 None:intergenic 35.0%
! TAGGCTGAAAAAGAAGTGTA+TGG - chr1_3:4301125-4301144 None:intergenic 35.0%
TAGAACGTTGTTGAAAAGTG+TGG + chr1_3:4301307-4301326 Msa0098370:three_prime_UTR 35.0%
! GTTACTAACCGTTTGGAATT+TGG + chr1_3:4296370-4296389 Msa0098370:five_prime_UTR 35.0%
GTCTTCTTCTTCGTAGTTAA+TGG - chr1_3:4296426-4296445 None:intergenic 35.0%
GAACAAGACCATAATCGAAA+CGG + chr1_3:4296494-4296513 Msa0098370:CDS 35.0%
AATGAGATTATGATCCTGTG+TGG - chr1_3:4296528-4296547 None:intergenic 35.0%
! CGATTTTTACTGAGAGGTTT+TGG - chr1_3:4296584-4296603 None:intergenic 35.0%
AAGAGAAAGAGAAAGGCTTT+AGG + chr1_3:4296617-4296636 Msa0098370:CDS 35.0%
AGAAACCTGTCAATGTTGAT+GGG - chr1_3:4296656-4296675 None:intergenic 35.0%
AAGAAACCTGTCAATGTTGA+TGG - chr1_3:4296657-4296676 None:intergenic 35.0%
TAATGCTGAATGTGTTATGC+TGG + chr1_3:4296702-4296721 Msa0098370:intron 35.0%
!! TTATGCTGGTTGTGTTTTAC+TGG + chr1_3:4296716-4296735 Msa0098370:intron 35.0%
!! GCTGTTTTCAGCTTATTTTC+AGG + chr1_3:4296817-4296836 Msa0098370:intron 35.0%
TACATGGTATATACAGCTGT+AGG + chr1_3:4296992-4297011 Msa0098370:CDS 35.0%
GTCTAAATTCGTGTAGGATA+GGG + chr1_3:4297107-4297126 Msa0098370:intron 35.0%
TTTGACGAAGCAAAATCAAG+AGG - chr1_3:4297336-4297355 None:intergenic 35.0%
! TGAATGTCAGAGCATTACTT+GGG - chr1_3:4297364-4297383 None:intergenic 35.0%
! TTGAATGTCAGAGCATTACT+TGG - chr1_3:4297365-4297384 None:intergenic 35.0%
AAAACAGGATGCATACGTAA+TGG - chr1_3:4297400-4297419 None:intergenic 35.0%
! ATGCATCCTGTTTTACTTGT+AGG + chr1_3:4297406-4297425 Msa0098370:intron 35.0%
! GTGTTCTTTTACTTGTATGG+AGG + chr1_3:4297759-4297778 Msa0098370:intron 35.0%
! TATTTTGTGGTGCAAGTTTG+TGG + chr1_3:4297805-4297824 Msa0098370:intron 35.0%
TCCAACCTTACAAATGTTGT+TGG + chr1_3:4297951-4297970 Msa0098370:intron 35.0%
CCAACCTTACAAATGTTGTT+GGG + chr1_3:4297952-4297971 Msa0098370:intron 35.0%
GTACGAGTATAAATAAGGGA+TGG + chr1_3:4298133-4298152 Msa0098370:intron 35.0%
GAAATGTTTCCTTGCGAATT+TGG - chr1_3:4298341-4298360 None:intergenic 35.0%
!! GCATACTAAAGAAGCATTGT+TGG + chr1_3:4298540-4298559 Msa0098370:intron 35.0%
! GTAAAGTGAGTGCTGTATAA+TGG - chr1_3:4298570-4298589 None:intergenic 35.0%
TTTCATCGTTGTCCCATAAT+TGG - chr1_3:4298615-4298634 None:intergenic 35.0%
TCATTTCAACAGATGCTTTG+CGG + chr1_3:4298774-4298793 Msa0098370:intron 35.0%
! AATGCAACGCACATTTTACT+GGG - chr1_3:4298849-4298868 None:intergenic 35.0%
!! CTCTAACCTTTTCTAAGAAG+AGG - chr1_3:4298977-4298996 None:intergenic 35.0%
AGTTCAGATTCTACCTGATT+TGG + chr1_3:4298995-4299014 Msa0098370:intron 35.0%
AGATAAGCATAATCAGGTCA+AGG - chr1_3:4299026-4299045 None:intergenic 35.0%
GTTGTATTGTATGGTCTTCT+AGG - chr1_3:4299056-4299075 None:intergenic 35.0%
TGGTTAAAATCTGCAAGGTT+GGG - chr1_3:4299111-4299130 None:intergenic 35.0%
!! GTTTCTGGTTAAAATCTGCA+AGG - chr1_3:4299116-4299135 None:intergenic 35.0%
TGTTGAGTAGGTAGTAGTAA+AGG + chr1_3:4299403-4299422 Msa0098370:intron 35.0%
TAGACAGCCCTAATATATGT+AGG + chr1_3:4299471-4299490 Msa0098370:intron 35.0%
ATGTAGGAGAATCAAACTGA+AGG + chr1_3:4299487-4299506 Msa0098370:intron 35.0%
AAAGGGTGGCTTACAATATT+AGG - chr1_3:4299553-4299572 None:intergenic 35.0%
AATATTGTAAGCCACCCTTT+AGG + chr1_3:4299553-4299572 Msa0098370:intron 35.0%
AGTACAAAATTCCTAAAGGG+TGG - chr1_3:4299567-4299586 None:intergenic 35.0%
!!! CTTTTTAAAGCTGTCCGATT+TGG + chr1_3:4299848-4299867 Msa0098370:intron 35.0%
AAATTTGTGACGTGCCAAAT+CGG - chr1_3:4299865-4299884 None:intergenic 35.0%
GAAAAAAGCAAGAGAGTTTG+AGG + chr1_3:4300032-4300051 Msa0098370:CDS 35.0%
AGTAGACTAAGTGTGTGTTT+GGG + chr1_3:4300133-4300152 Msa0098370:intron 35.0%
GAAGTGAAGTGATTTCTGTT+TGG + chr1_3:4300208-4300227 Msa0098370:intron 35.0%
! AAAGGACTTTTGCATTGAGT+TGG - chr1_3:4300287-4300306 None:intergenic 35.0%
GGACTAAAAGCAACTTTACT+TGG + chr1_3:4300337-4300356 Msa0098370:intron 35.0%
CTCACAGTTGTAGAAAACAT+AGG - chr1_3:4300416-4300435 None:intergenic 35.0%
!! AGTTTTATGTTCATCTGCCT+CGG - chr1_3:4300483-4300502 None:intergenic 35.0%
AATTAGCAGGCAAAAAGTTC+CGG + chr1_3:4300538-4300557 Msa0098370:intron 35.0%
GTTTATCTTGTGATTGCTCA+TGG + chr1_3:4300753-4300772 Msa0098370:intron 35.0%
AAGTAGGATTGTCAGAAACA+TGG - chr1_3:4300897-4300916 None:intergenic 35.0%
CAAGATCAAGATAAACCACT+AGG + chr1_3:4300931-4300950 Msa0098370:CDS 35.0%
ATTCTCAATCTGTCATGAAC+AGG - chr1_3:4300976-4300995 None:intergenic 35.0%
!! ATGAAGGCTTTTTCCATTCA+AGG - chr1_3:4301057-4301076 None:intergenic 35.0%
AAAAAAACGTTCCAGGATGA+AGG - chr1_3:4301073-4301092 None:intergenic 35.0%
GTGTATGGAAAGAAGAAAGA+AGG - chr1_3:4301110-4301129 None:intergenic 35.0%
! TAGGCTGAAAAAGAAGTGTA+TGG - chr1_3:4301125-4301144 None:intergenic 35.0%
TAGAACGTTGTTGAAAAGTG+TGG + chr1_3:4301307-4301326 Msa0098370:three_prime_UTR 35.0%
AGAAGAAGACGATGTTGAGA+TGG + chr1_3:4296436-4296455 Msa0098370:CDS 40.0%
! TGAGATGGTTGATGTTGAAG+AGG + chr1_3:4296451-4296470 Msa0098370:CDS 40.0%
! GAGATGGTTGATGTTGAAGA+GGG + chr1_3:4296452-4296471 Msa0098370:CDS 40.0%
TGATGTTGAAGAGGGTGAAT+TGG + chr1_3:4296460-4296479 Msa0098370:CDS 40.0%
!! AGAAAGAGAAAGGCTTTAGG+AGG + chr1_3:4296620-4296639 Msa0098370:CDS 40.0%
GGTTTGTGATAGAGACATGT+CGG + chr1_3:4296948-4296967 Msa0098370:intron 40.0%
! CGATATCGTCAAAGAGGTAT+TGG + chr1_3:4297039-4297058 Msa0098370:intron 40.0%
! CAACATTGCAAGGAAGTACA+AGG - chr1_3:4297067-4297086 None:intergenic 40.0%
TGCATGGTCTAAATTCGTGT+AGG + chr1_3:4297101-4297120 Msa0098370:intron 40.0%
GGTCTAAATTCGTGTAGGAT+AGG + chr1_3:4297106-4297125 Msa0098370:intron 40.0%
CTTTACGATTGTCCAAACTG+CGG + chr1_3:4297133-4297152 Msa0098370:intron 40.0%
GAAGCAAAATCAAGAGGACT+GGG - chr1_3:4297330-4297349 None:intergenic 40.0%
GGAGAACCTACAAGTAAAAC+AGG - chr1_3:4297415-4297434 None:intergenic 40.0%
! GTAGGTTCTCCTTTTTACAC+TGG + chr1_3:4297424-4297443 Msa0098370:intron 40.0%
ACACAATCAAAAGAACACCG+AGG - chr1_3:4297466-4297485 None:intergenic 40.0%
CAAGTATTCGGAAGTAAGAC+AGG - chr1_3:4297697-4297716 None:intergenic 40.0%
! AAGGAGCACATGCAAGTATT+CGG - chr1_3:4297709-4297728 None:intergenic 40.0%
CATTTGTAAGGTTGGAACCA+AGG - chr1_3:4297947-4297966 None:intergenic 40.0%
CCCAACAACATTTGTAAGGT+TGG - chr1_3:4297955-4297974 None:intergenic 40.0%
AATAAGGACTTGGGAAAAGG+AGG - chr1_3:4298253-4298272 None:intergenic 40.0%
TTCTGTTCAGTACTAGTAGC+AGG - chr1_3:4298317-4298336 None:intergenic 40.0%
GAACAGAATCCAAATTCGCA+AGG + chr1_3:4298329-4298348 Msa0098370:intron 40.0%
CAGCACTCACTTTACTTCAA+TGG + chr1_3:4298575-4298594 Msa0098370:intron 40.0%
CTTTGCGGACTTTCTAATCT+TGG + chr1_3:4298789-4298808 Msa0098370:intron 40.0%
!! TTCTAATCTTGGCTTGTCAC+TGG + chr1_3:4298800-4298819 Msa0098370:intron 40.0%
! CAATGCAACGCACATTTTAC+TGG - chr1_3:4298850-4298869 None:intergenic 40.0%
TCCCTTTATTGATGGGAATG+TGG + chr1_3:4298914-4298933 Msa0098370:intron 40.0%
GCCACATTCCCATCAATAAA+GGG - chr1_3:4298918-4298937 None:intergenic 40.0%
TGCCACATTCCCATCAATAA+AGG - chr1_3:4298919-4298938 None:intergenic 40.0%
CTGGTTAAAATCTGCAAGGT+TGG - chr1_3:4299112-4299131 None:intergenic 40.0%
!! AATGAAGGTGTTTATCAGCC+AGG - chr1_3:4299179-4299198 None:intergenic 40.0%
! TACTTGCTGATCAAGCAGTA+AGG + chr1_3:4299583-4299602 Msa0098370:intron 40.0%
TCAAGCAGTAAGGACTTTGT+TGG + chr1_3:4299593-4299612 Msa0098370:intron 40.0%
CAGTAGACTAAGTGTGTGTT+TGG + chr1_3:4300132-4300151 Msa0098370:intron 40.0%
CAATTCCACATATTAGACCG+AGG + chr1_3:4300463-4300482 Msa0098370:intron 40.0%
ATTAGCAGGCAAAAAGTTCC+GGG + chr1_3:4300539-4300558 Msa0098370:intron 40.0%
! AACCAAGACTGCTGTTTAGA+TGG + chr1_3:4300593-4300612 Msa0098370:intron 40.0%
AACCATCTAAACAGCAGTCT+TGG - chr1_3:4300598-4300617 None:intergenic 40.0%
ATGGATGGCTGCTTAAAACT+TGG - chr1_3:4300814-4300833 None:intergenic 40.0%
! AGAATCCTCCTCTTTTTGCA+TGG - chr1_3:4300833-4300852 None:intergenic 40.0%
TGCGCACTAGAAAATGTACA+AGG - chr1_3:4300868-4300887 None:intergenic 40.0%
!! TACATTTTCTAGTGCGCATC+AGG + chr1_3:4300870-4300889 Msa0098370:CDS 40.0%
!! ACATTTTCTAGTGCGCATCA+GGG + chr1_3:4300871-4300890 Msa0098370:CDS 40.0%
! CAGGAACACGTTTCTTTTCA+GGG - chr1_3:4300957-4300976 None:intergenic 40.0%
! ACAGGAACACGTTTCTTTTC+AGG - chr1_3:4300958-4300977 None:intergenic 40.0%
AGATCATCATCGTAGGAAAC+AGG - chr1_3:4301000-4301019 None:intergenic 40.0%
TGATGTAACCTTGCCTTGAA+TGG + chr1_3:4301041-4301060 Msa0098370:exon 40.0%
AATGGAAAAAGCCTTCATCC+TGG + chr1_3:4301059-4301078 Msa0098370:exon 40.0%
TGCTTGTGACAACAAGTTCA+CGG + chr1_3:4301150-4301169 Msa0098370:three_prime_UTR 40.0%
! ACGTTGTTGAAAAGTGTGGT+TGG + chr1_3:4301311-4301330 Msa0098370:three_prime_UTR 40.0%
AGAAGAAGACGATGTTGAGA+TGG + chr1_3:4296436-4296455 Msa0098370:CDS 40.0%
! TGAGATGGTTGATGTTGAAG+AGG + chr1_3:4296451-4296470 Msa0098370:CDS 40.0%
! GAGATGGTTGATGTTGAAGA+GGG + chr1_3:4296452-4296471 Msa0098370:CDS 40.0%
TGATGTTGAAGAGGGTGAAT+TGG + chr1_3:4296460-4296479 Msa0098370:CDS 40.0%
!! AGAAAGAGAAAGGCTTTAGG+AGG + chr1_3:4296620-4296639 Msa0098370:CDS 40.0%
GGTTTGTGATAGAGACATGT+CGG + chr1_3:4296948-4296967 Msa0098370:intron 40.0%
! CGATATCGTCAAAGAGGTAT+TGG + chr1_3:4297039-4297058 Msa0098370:intron 40.0%
! CAACATTGCAAGGAAGTACA+AGG - chr1_3:4297067-4297086 None:intergenic 40.0%
TGCATGGTCTAAATTCGTGT+AGG + chr1_3:4297101-4297120 Msa0098370:intron 40.0%
GGTCTAAATTCGTGTAGGAT+AGG + chr1_3:4297106-4297125 Msa0098370:intron 40.0%
CTTTACGATTGTCCAAACTG+CGG + chr1_3:4297133-4297152 Msa0098370:intron 40.0%
GAAGCAAAATCAAGAGGACT+GGG - chr1_3:4297330-4297349 None:intergenic 40.0%
GGAGAACCTACAAGTAAAAC+AGG - chr1_3:4297415-4297434 None:intergenic 40.0%
! GTAGGTTCTCCTTTTTACAC+TGG + chr1_3:4297424-4297443 Msa0098370:intron 40.0%
ACACAATCAAAAGAACACCG+AGG - chr1_3:4297466-4297485 None:intergenic 40.0%
CAAGTATTCGGAAGTAAGAC+AGG - chr1_3:4297697-4297716 None:intergenic 40.0%
! AAGGAGCACATGCAAGTATT+CGG - chr1_3:4297709-4297728 None:intergenic 40.0%
CATTTGTAAGGTTGGAACCA+AGG - chr1_3:4297947-4297966 None:intergenic 40.0%
CCCAACAACATTTGTAAGGT+TGG - chr1_3:4297955-4297974 None:intergenic 40.0%
AATAAGGACTTGGGAAAAGG+AGG - chr1_3:4298253-4298272 None:intergenic 40.0%
TTCTGTTCAGTACTAGTAGC+AGG - chr1_3:4298317-4298336 None:intergenic 40.0%
GAACAGAATCCAAATTCGCA+AGG + chr1_3:4298329-4298348 Msa0098370:intron 40.0%
CAGCACTCACTTTACTTCAA+TGG + chr1_3:4298575-4298594 Msa0098370:intron 40.0%
CTTTGCGGACTTTCTAATCT+TGG + chr1_3:4298789-4298808 Msa0098370:intron 40.0%
!! TTCTAATCTTGGCTTGTCAC+TGG + chr1_3:4298800-4298819 Msa0098370:intron 40.0%
! CAATGCAACGCACATTTTAC+TGG - chr1_3:4298850-4298869 None:intergenic 40.0%
TCCCTTTATTGATGGGAATG+TGG + chr1_3:4298914-4298933 Msa0098370:intron 40.0%
GCCACATTCCCATCAATAAA+GGG - chr1_3:4298918-4298937 None:intergenic 40.0%
TGCCACATTCCCATCAATAA+AGG - chr1_3:4298919-4298938 None:intergenic 40.0%
CTGGTTAAAATCTGCAAGGT+TGG - chr1_3:4299112-4299131 None:intergenic 40.0%
!! AATGAAGGTGTTTATCAGCC+AGG - chr1_3:4299179-4299198 None:intergenic 40.0%
! TACTTGCTGATCAAGCAGTA+AGG + chr1_3:4299583-4299602 Msa0098370:intron 40.0%
TCAAGCAGTAAGGACTTTGT+TGG + chr1_3:4299593-4299612 Msa0098370:intron 40.0%
CAGTAGACTAAGTGTGTGTT+TGG + chr1_3:4300132-4300151 Msa0098370:intron 40.0%
CAATTCCACATATTAGACCG+AGG + chr1_3:4300463-4300482 Msa0098370:intron 40.0%
ATTAGCAGGCAAAAAGTTCC+GGG + chr1_3:4300539-4300558 Msa0098370:intron 40.0%
! AACCAAGACTGCTGTTTAGA+TGG + chr1_3:4300593-4300612 Msa0098370:intron 40.0%
AACCATCTAAACAGCAGTCT+TGG - chr1_3:4300598-4300617 None:intergenic 40.0%
ATGGATGGCTGCTTAAAACT+TGG - chr1_3:4300814-4300833 None:intergenic 40.0%
! AGAATCCTCCTCTTTTTGCA+TGG - chr1_3:4300833-4300852 None:intergenic 40.0%
TGCGCACTAGAAAATGTACA+AGG - chr1_3:4300868-4300887 None:intergenic 40.0%
!! TACATTTTCTAGTGCGCATC+AGG + chr1_3:4300870-4300889 Msa0098370:CDS 40.0%
!! ACATTTTCTAGTGCGCATCA+GGG + chr1_3:4300871-4300890 Msa0098370:CDS 40.0%
! CAGGAACACGTTTCTTTTCA+GGG - chr1_3:4300957-4300976 None:intergenic 40.0%
! ACAGGAACACGTTTCTTTTC+AGG - chr1_3:4300958-4300977 None:intergenic 40.0%
AGATCATCATCGTAGGAAAC+AGG - chr1_3:4301000-4301019 None:intergenic 40.0%
TGATGTAACCTTGCCTTGAA+TGG + chr1_3:4301041-4301060 Msa0098370:exon 40.0%
AATGGAAAAAGCCTTCATCC+TGG + chr1_3:4301059-4301078 Msa0098370:exon 40.0%
TGCTTGTGACAACAAGTTCA+CGG + chr1_3:4301150-4301169 Msa0098370:three_prime_UTR 40.0%
! ACGTTGTTGAAAAGTGTGGT+TGG + chr1_3:4301311-4301330 Msa0098370:three_prime_UTR 40.0%
AGAAGAAGACGATGTTGAGA+TGG + chr1_3:4296436-4296455 Msa0098370:CDS 40.0%
! TGAGATGGTTGATGTTGAAG+AGG + chr1_3:4296451-4296470 Msa0098370:CDS 40.0%
! GAGATGGTTGATGTTGAAGA+GGG + chr1_3:4296452-4296471 Msa0098370:CDS 40.0%
TGATGTTGAAGAGGGTGAAT+TGG + chr1_3:4296460-4296479 Msa0098370:CDS 40.0%
!! AGAAAGAGAAAGGCTTTAGG+AGG + chr1_3:4296620-4296639 Msa0098370:CDS 40.0%
GGTTTGTGATAGAGACATGT+CGG + chr1_3:4296948-4296967 Msa0098370:intron 40.0%
! CGATATCGTCAAAGAGGTAT+TGG + chr1_3:4297039-4297058 Msa0098370:intron 40.0%
! CAACATTGCAAGGAAGTACA+AGG - chr1_3:4297067-4297086 None:intergenic 40.0%
TGCATGGTCTAAATTCGTGT+AGG + chr1_3:4297101-4297120 Msa0098370:intron 40.0%
GGTCTAAATTCGTGTAGGAT+AGG + chr1_3:4297106-4297125 Msa0098370:intron 40.0%
CTTTACGATTGTCCAAACTG+CGG + chr1_3:4297133-4297152 Msa0098370:intron 40.0%
GAAGCAAAATCAAGAGGACT+GGG - chr1_3:4297330-4297349 None:intergenic 40.0%
GGAGAACCTACAAGTAAAAC+AGG - chr1_3:4297415-4297434 None:intergenic 40.0%
! GTAGGTTCTCCTTTTTACAC+TGG + chr1_3:4297424-4297443 Msa0098370:intron 40.0%
ACACAATCAAAAGAACACCG+AGG - chr1_3:4297466-4297485 None:intergenic 40.0%
CAAGTATTCGGAAGTAAGAC+AGG - chr1_3:4297697-4297716 None:intergenic 40.0%
! AAGGAGCACATGCAAGTATT+CGG - chr1_3:4297709-4297728 None:intergenic 40.0%
CATTTGTAAGGTTGGAACCA+AGG - chr1_3:4297947-4297966 None:intergenic 40.0%
CCCAACAACATTTGTAAGGT+TGG - chr1_3:4297955-4297974 None:intergenic 40.0%
AATAAGGACTTGGGAAAAGG+AGG - chr1_3:4298253-4298272 None:intergenic 40.0%
TTCTGTTCAGTACTAGTAGC+AGG - chr1_3:4298317-4298336 None:intergenic 40.0%
GAACAGAATCCAAATTCGCA+AGG + chr1_3:4298329-4298348 Msa0098370:intron 40.0%
CAGCACTCACTTTACTTCAA+TGG + chr1_3:4298575-4298594 Msa0098370:intron 40.0%
CTTTGCGGACTTTCTAATCT+TGG + chr1_3:4298789-4298808 Msa0098370:intron 40.0%
!! TTCTAATCTTGGCTTGTCAC+TGG + chr1_3:4298800-4298819 Msa0098370:intron 40.0%
! CAATGCAACGCACATTTTAC+TGG - chr1_3:4298850-4298869 None:intergenic 40.0%
TCCCTTTATTGATGGGAATG+TGG + chr1_3:4298914-4298933 Msa0098370:intron 40.0%
GCCACATTCCCATCAATAAA+GGG - chr1_3:4298918-4298937 None:intergenic 40.0%
TGCCACATTCCCATCAATAA+AGG - chr1_3:4298919-4298938 None:intergenic 40.0%
CTGGTTAAAATCTGCAAGGT+TGG - chr1_3:4299112-4299131 None:intergenic 40.0%
!! AATGAAGGTGTTTATCAGCC+AGG - chr1_3:4299179-4299198 None:intergenic 40.0%
! TACTTGCTGATCAAGCAGTA+AGG + chr1_3:4299583-4299602 Msa0098370:intron 40.0%
TCAAGCAGTAAGGACTTTGT+TGG + chr1_3:4299593-4299612 Msa0098370:intron 40.0%
CAGTAGACTAAGTGTGTGTT+TGG + chr1_3:4300132-4300151 Msa0098370:intron 40.0%
CAATTCCACATATTAGACCG+AGG + chr1_3:4300463-4300482 Msa0098370:intron 40.0%
ATTAGCAGGCAAAAAGTTCC+GGG + chr1_3:4300539-4300558 Msa0098370:intron 40.0%
! AACCAAGACTGCTGTTTAGA+TGG + chr1_3:4300593-4300612 Msa0098370:intron 40.0%
AACCATCTAAACAGCAGTCT+TGG - chr1_3:4300598-4300617 None:intergenic 40.0%
ATGGATGGCTGCTTAAAACT+TGG - chr1_3:4300814-4300833 None:intergenic 40.0%
! AGAATCCTCCTCTTTTTGCA+TGG - chr1_3:4300833-4300852 None:intergenic 40.0%
TGCGCACTAGAAAATGTACA+AGG - chr1_3:4300868-4300887 None:intergenic 40.0%
!! TACATTTTCTAGTGCGCATC+AGG + chr1_3:4300870-4300889 Msa0098370:CDS 40.0%
!! ACATTTTCTAGTGCGCATCA+GGG + chr1_3:4300871-4300890 Msa0098370:CDS 40.0%
! CAGGAACACGTTTCTTTTCA+GGG - chr1_3:4300957-4300976 None:intergenic 40.0%
! ACAGGAACACGTTTCTTTTC+AGG - chr1_3:4300958-4300977 None:intergenic 40.0%
AGATCATCATCGTAGGAAAC+AGG - chr1_3:4301000-4301019 None:intergenic 40.0%
TGATGTAACCTTGCCTTGAA+TGG + chr1_3:4301041-4301060 Msa0098370:exon 40.0%
AATGGAAAAAGCCTTCATCC+TGG + chr1_3:4301059-4301078 Msa0098370:exon 40.0%
TGCTTGTGACAACAAGTTCA+CGG + chr1_3:4301150-4301169 Msa0098370:three_prime_UTR 40.0%
! ACGTTGTTGAAAAGTGTGGT+TGG + chr1_3:4301311-4301330 Msa0098370:three_prime_UTR 40.0%
AGAAGAAGACGATGTTGAGA+TGG + chr1_3:4296436-4296455 Msa0098370:CDS 40.0%
! TGAGATGGTTGATGTTGAAG+AGG + chr1_3:4296451-4296470 Msa0098370:CDS 40.0%
! GAGATGGTTGATGTTGAAGA+GGG + chr1_3:4296452-4296471 Msa0098370:CDS 40.0%
TGATGTTGAAGAGGGTGAAT+TGG + chr1_3:4296460-4296479 Msa0098370:CDS 40.0%
!! AGAAAGAGAAAGGCTTTAGG+AGG + chr1_3:4296620-4296639 Msa0098370:CDS 40.0%
GGTTTGTGATAGAGACATGT+CGG + chr1_3:4296948-4296967 Msa0098370:intron 40.0%
! CGATATCGTCAAAGAGGTAT+TGG + chr1_3:4297039-4297058 Msa0098370:intron 40.0%
! CAACATTGCAAGGAAGTACA+AGG - chr1_3:4297067-4297086 None:intergenic 40.0%
TGCATGGTCTAAATTCGTGT+AGG + chr1_3:4297101-4297120 Msa0098370:intron 40.0%
GGTCTAAATTCGTGTAGGAT+AGG + chr1_3:4297106-4297125 Msa0098370:intron 40.0%
CTTTACGATTGTCCAAACTG+CGG + chr1_3:4297133-4297152 Msa0098370:intron 40.0%
GAAGCAAAATCAAGAGGACT+GGG - chr1_3:4297330-4297349 None:intergenic 40.0%
GGAGAACCTACAAGTAAAAC+AGG - chr1_3:4297415-4297434 None:intergenic 40.0%
! GTAGGTTCTCCTTTTTACAC+TGG + chr1_3:4297424-4297443 Msa0098370:intron 40.0%
ACACAATCAAAAGAACACCG+AGG - chr1_3:4297466-4297485 None:intergenic 40.0%
CAAGTATTCGGAAGTAAGAC+AGG - chr1_3:4297697-4297716 None:intergenic 40.0%
! AAGGAGCACATGCAAGTATT+CGG - chr1_3:4297709-4297728 None:intergenic 40.0%
CATTTGTAAGGTTGGAACCA+AGG - chr1_3:4297947-4297966 None:intergenic 40.0%
CCCAACAACATTTGTAAGGT+TGG - chr1_3:4297955-4297974 None:intergenic 40.0%
AATAAGGACTTGGGAAAAGG+AGG - chr1_3:4298253-4298272 None:intergenic 40.0%
TTCTGTTCAGTACTAGTAGC+AGG - chr1_3:4298317-4298336 None:intergenic 40.0%
GAACAGAATCCAAATTCGCA+AGG + chr1_3:4298329-4298348 Msa0098370:intron 40.0%
CAGCACTCACTTTACTTCAA+TGG + chr1_3:4298575-4298594 Msa0098370:intron 40.0%
CTTTGCGGACTTTCTAATCT+TGG + chr1_3:4298789-4298808 Msa0098370:intron 40.0%
!! TTCTAATCTTGGCTTGTCAC+TGG + chr1_3:4298800-4298819 Msa0098370:intron 40.0%
! CAATGCAACGCACATTTTAC+TGG - chr1_3:4298850-4298869 None:intergenic 40.0%
TCCCTTTATTGATGGGAATG+TGG + chr1_3:4298914-4298933 Msa0098370:intron 40.0%
GCCACATTCCCATCAATAAA+GGG - chr1_3:4298918-4298937 None:intergenic 40.0%
TGCCACATTCCCATCAATAA+AGG - chr1_3:4298919-4298938 None:intergenic 40.0%
CTGGTTAAAATCTGCAAGGT+TGG - chr1_3:4299112-4299131 None:intergenic 40.0%
!! AATGAAGGTGTTTATCAGCC+AGG - chr1_3:4299179-4299198 None:intergenic 40.0%
! TACTTGCTGATCAAGCAGTA+AGG + chr1_3:4299583-4299602 Msa0098370:intron 40.0%
TCAAGCAGTAAGGACTTTGT+TGG + chr1_3:4299593-4299612 Msa0098370:intron 40.0%
CAGTAGACTAAGTGTGTGTT+TGG + chr1_3:4300132-4300151 Msa0098370:intron 40.0%
CAATTCCACATATTAGACCG+AGG + chr1_3:4300463-4300482 Msa0098370:intron 40.0%
ATTAGCAGGCAAAAAGTTCC+GGG + chr1_3:4300539-4300558 Msa0098370:intron 40.0%
! AACCAAGACTGCTGTTTAGA+TGG + chr1_3:4300593-4300612 Msa0098370:intron 40.0%
AACCATCTAAACAGCAGTCT+TGG - chr1_3:4300598-4300617 None:intergenic 40.0%
ATGGATGGCTGCTTAAAACT+TGG - chr1_3:4300814-4300833 None:intergenic 40.0%
! AGAATCCTCCTCTTTTTGCA+TGG - chr1_3:4300833-4300852 None:intergenic 40.0%
TGCGCACTAGAAAATGTACA+AGG - chr1_3:4300868-4300887 None:intergenic 40.0%
!! TACATTTTCTAGTGCGCATC+AGG + chr1_3:4300870-4300889 Msa0098370:CDS 40.0%
!! ACATTTTCTAGTGCGCATCA+GGG + chr1_3:4300871-4300890 Msa0098370:CDS 40.0%
! CAGGAACACGTTTCTTTTCA+GGG - chr1_3:4300957-4300976 None:intergenic 40.0%
! ACAGGAACACGTTTCTTTTC+AGG - chr1_3:4300958-4300977 None:intergenic 40.0%
AGATCATCATCGTAGGAAAC+AGG - chr1_3:4301000-4301019 None:intergenic 40.0%
TGATGTAACCTTGCCTTGAA+TGG + chr1_3:4301041-4301060 Msa0098370:exon 40.0%
AATGGAAAAAGCCTTCATCC+TGG + chr1_3:4301059-4301078 Msa0098370:exon 40.0%
TGCTTGTGACAACAAGTTCA+CGG + chr1_3:4301150-4301169 Msa0098370:three_prime_UTR 40.0%
! ACGTTGTTGAAAAGTGTGGT+TGG + chr1_3:4301311-4301330 Msa0098370:three_prime_UTR 40.0%
CTCGAGAGTTACTAACCGTT+TGG + chr1_3:4296363-4296382 Msa0098370:five_prime_UTR 45.0%
! AACCGTTTGGAATTTGGGCA+TGG + chr1_3:4296376-4296395 Msa0098370:exon 45.0%
CTCCATGCCCAAATTCCAAA+CGG - chr1_3:4296381-4296400 None:intergenic 45.0%
! GTTTGGAATTTGGGCATGGA+GGG + chr1_3:4296380-4296399 Msa0098370:exon 45.0%
GAGATTATGATCCTGTGTGG+CGG - chr1_3:4296525-4296544 None:intergenic 45.0%
! CGCTTCCGATTTTTACTGAG+AGG - chr1_3:4296590-4296609 None:intergenic 45.0%
!! GAGAAAGGCTTTAGGAGGAT+CGG + chr1_3:4296625-4296644 Msa0098370:CDS 45.0%
ATGCACCCATCAACATTGAC+AGG + chr1_3:4296648-4296667 Msa0098370:CDS 45.0%
TATACAGCTGTAGGTTGCCT+TGG + chr1_3:4297001-4297020 Msa0098370:CDS 45.0%
ATACAGCTGTAGGTTGCCTT+GGG + chr1_3:4297002-4297021 Msa0098370:CDS 45.0%
GTTGAGCGATATCGTCAAAG+AGG + chr1_3:4297033-4297052 Msa0098370:CDS 45.0%
CGAAGCAAAATCAAGAGGAC+TGG - chr1_3:4297331-4297350 None:intergenic 45.0%
GATATTTGGGGGTGAGTTTG+AGG + chr1_3:4297502-4297521 Msa0098370:intron 45.0%
TGTGGTGTTTGCCTTGTGTA+TGG + chr1_3:4297823-4297842 Msa0098370:intron 45.0%
TAAGGTTGGAACCAAGGTTG+AGG - chr1_3:4297941-4297960 None:intergenic 45.0%
AGTAGCAGGACAAGTCACAA+AGG - chr1_3:4298303-4298322 None:intergenic 45.0%
! GTCTTTGCACTCACGTTTTG+TGG - chr1_3:4298513-4298532 None:intergenic 45.0%
TTACTGGGAGATGAAGAGAG+AGG - chr1_3:4298834-4298853 None:intergenic 45.0%
TGGGAATGTGGCATTGTTTG+AGG + chr1_3:4298926-4298945 Msa0098370:intron 45.0%
! GGAAGGAGCAAACTAGTTTC+TGG - chr1_3:4299131-4299150 None:intergenic 45.0%
!! AAGGAACAATTGATGGCGCT+AGG + chr1_3:4299422-4299441 Msa0098370:intron 45.0%
GTAGACACAATACAGTCCTG+TGG + chr1_3:4299910-4299929 Msa0098370:CDS 45.0%
CTGCTGATGGTAAGCGATTT+CGG + chr1_3:4299944-4299963 Msa0098370:CDS 45.0%
ATGGTAAGCGATTTCGGACA+GGG + chr1_3:4299950-4299969 Msa0098370:CDS 45.0%
TGTTCCATTGAGTGCATCGA+CGG + chr1_3:4300107-4300126 Msa0098370:intron 45.0%
ATCTGCCTCGGTCTAATATG+TGG - chr1_3:4300471-4300490 None:intergenic 45.0%
! GACTGCTGTTTAGATGGTTC+CGG + chr1_3:4300599-4300618 Msa0098370:intron 45.0%
! ACTGCTGTTTAGATGGTTCC+GGG + chr1_3:4300600-4300619 Msa0098370:intron 45.0%
! CTTTTACGAAAAAGGCAGCC+CGG - chr1_3:4300621-4300640 None:intergenic 45.0%
! TCCTCCTCTTTTTGCATGGA+TGG - chr1_3:4300829-4300848 None:intergenic 45.0%
AGAGGAGGATTCTTCTCAAG+AGG + chr1_3:4300840-4300859 Msa0098370:CDS 45.0%
TGCATTTGCAATGCGCAAGT+AGG - chr1_3:4300913-4300932 None:intergenic 45.0%
TCCTACGATGATGATCTGCT+TGG + chr1_3:4301003-4301022 Msa0098370:CDS 45.0%
TCCAAGCAGATCATCATCGT+AGG - chr1_3:4301007-4301026 None:intergenic 45.0%
!! GGCTTTTTCCATTCAAGGCA+AGG - chr1_3:4301052-4301071 None:intergenic 45.0%
TGTGACAACAAGTTCACGGA+TGG + chr1_3:4301154-4301173 Msa0098370:three_prime_UTR 45.0%
TGGAGCAGTATGGTTCCATT+TGG + chr1_3:4301174-4301193 Msa0098370:three_prime_UTR 45.0%
CTCGAGAGTTACTAACCGTT+TGG + chr1_3:4296363-4296382 Msa0098370:five_prime_UTR 45.0%
! AACCGTTTGGAATTTGGGCA+TGG + chr1_3:4296376-4296395 Msa0098370:exon 45.0%
CTCCATGCCCAAATTCCAAA+CGG - chr1_3:4296381-4296400 None:intergenic 45.0%
! GTTTGGAATTTGGGCATGGA+GGG + chr1_3:4296380-4296399 Msa0098370:exon 45.0%
GAGATTATGATCCTGTGTGG+CGG - chr1_3:4296525-4296544 None:intergenic 45.0%
! CGCTTCCGATTTTTACTGAG+AGG - chr1_3:4296590-4296609 None:intergenic 45.0%
!! GAGAAAGGCTTTAGGAGGAT+CGG + chr1_3:4296625-4296644 Msa0098370:CDS 45.0%
ATGCACCCATCAACATTGAC+AGG + chr1_3:4296648-4296667 Msa0098370:CDS 45.0%
TATACAGCTGTAGGTTGCCT+TGG + chr1_3:4297001-4297020 Msa0098370:CDS 45.0%
ATACAGCTGTAGGTTGCCTT+GGG + chr1_3:4297002-4297021 Msa0098370:CDS 45.0%
GTTGAGCGATATCGTCAAAG+AGG + chr1_3:4297033-4297052 Msa0098370:CDS 45.0%
CGAAGCAAAATCAAGAGGAC+TGG - chr1_3:4297331-4297350 None:intergenic 45.0%
GATATTTGGGGGTGAGTTTG+AGG + chr1_3:4297502-4297521 Msa0098370:intron 45.0%
TGTGGTGTTTGCCTTGTGTA+TGG + chr1_3:4297823-4297842 Msa0098370:intron 45.0%
TAAGGTTGGAACCAAGGTTG+AGG - chr1_3:4297941-4297960 None:intergenic 45.0%
AGTAGCAGGACAAGTCACAA+AGG - chr1_3:4298303-4298322 None:intergenic 45.0%
! GTCTTTGCACTCACGTTTTG+TGG - chr1_3:4298513-4298532 None:intergenic 45.0%
TTACTGGGAGATGAAGAGAG+AGG - chr1_3:4298834-4298853 None:intergenic 45.0%
TGGGAATGTGGCATTGTTTG+AGG + chr1_3:4298926-4298945 Msa0098370:intron 45.0%
! GGAAGGAGCAAACTAGTTTC+TGG - chr1_3:4299131-4299150 None:intergenic 45.0%
!! AAGGAACAATTGATGGCGCT+AGG + chr1_3:4299422-4299441 Msa0098370:intron 45.0%
GTAGACACAATACAGTCCTG+TGG + chr1_3:4299910-4299929 Msa0098370:CDS 45.0%
CTGCTGATGGTAAGCGATTT+CGG + chr1_3:4299944-4299963 Msa0098370:CDS 45.0%
ATGGTAAGCGATTTCGGACA+GGG + chr1_3:4299950-4299969 Msa0098370:CDS 45.0%
TGTTCCATTGAGTGCATCGA+CGG + chr1_3:4300107-4300126 Msa0098370:intron 45.0%
ATCTGCCTCGGTCTAATATG+TGG - chr1_3:4300471-4300490 None:intergenic 45.0%
! GACTGCTGTTTAGATGGTTC+CGG + chr1_3:4300599-4300618 Msa0098370:intron 45.0%
! ACTGCTGTTTAGATGGTTCC+GGG + chr1_3:4300600-4300619 Msa0098370:intron 45.0%
! CTTTTACGAAAAAGGCAGCC+CGG - chr1_3:4300621-4300640 None:intergenic 45.0%
! TCCTCCTCTTTTTGCATGGA+TGG - chr1_3:4300829-4300848 None:intergenic 45.0%
AGAGGAGGATTCTTCTCAAG+AGG + chr1_3:4300840-4300859 Msa0098370:CDS 45.0%
TGCATTTGCAATGCGCAAGT+AGG - chr1_3:4300913-4300932 None:intergenic 45.0%
TCCTACGATGATGATCTGCT+TGG + chr1_3:4301003-4301022 Msa0098370:CDS 45.0%
TCCAAGCAGATCATCATCGT+AGG - chr1_3:4301007-4301026 None:intergenic 45.0%
!! GGCTTTTTCCATTCAAGGCA+AGG - chr1_3:4301052-4301071 None:intergenic 45.0%
TGTGACAACAAGTTCACGGA+TGG + chr1_3:4301154-4301173 Msa0098370:three_prime_UTR 45.0%
TGGAGCAGTATGGTTCCATT+TGG + chr1_3:4301174-4301193 Msa0098370:three_prime_UTR 45.0%
CTCGAGAGTTACTAACCGTT+TGG + chr1_3:4296363-4296382 Msa0098370:five_prime_UTR 45.0%
! AACCGTTTGGAATTTGGGCA+TGG + chr1_3:4296376-4296395 Msa0098370:exon 45.0%
CTCCATGCCCAAATTCCAAA+CGG - chr1_3:4296381-4296400 None:intergenic 45.0%
! GTTTGGAATTTGGGCATGGA+GGG + chr1_3:4296380-4296399 Msa0098370:exon 45.0%
GAGATTATGATCCTGTGTGG+CGG - chr1_3:4296525-4296544 None:intergenic 45.0%
! CGCTTCCGATTTTTACTGAG+AGG - chr1_3:4296590-4296609 None:intergenic 45.0%
!! GAGAAAGGCTTTAGGAGGAT+CGG + chr1_3:4296625-4296644 Msa0098370:CDS 45.0%
ATGCACCCATCAACATTGAC+AGG + chr1_3:4296648-4296667 Msa0098370:CDS 45.0%
TATACAGCTGTAGGTTGCCT+TGG + chr1_3:4297001-4297020 Msa0098370:CDS 45.0%
ATACAGCTGTAGGTTGCCTT+GGG + chr1_3:4297002-4297021 Msa0098370:CDS 45.0%
GTTGAGCGATATCGTCAAAG+AGG + chr1_3:4297033-4297052 Msa0098370:CDS 45.0%
CGAAGCAAAATCAAGAGGAC+TGG - chr1_3:4297331-4297350 None:intergenic 45.0%
GATATTTGGGGGTGAGTTTG+AGG + chr1_3:4297502-4297521 Msa0098370:intron 45.0%
TGTGGTGTTTGCCTTGTGTA+TGG + chr1_3:4297823-4297842 Msa0098370:intron 45.0%
TAAGGTTGGAACCAAGGTTG+AGG - chr1_3:4297941-4297960 None:intergenic 45.0%
AGTAGCAGGACAAGTCACAA+AGG - chr1_3:4298303-4298322 None:intergenic 45.0%
! GTCTTTGCACTCACGTTTTG+TGG - chr1_3:4298513-4298532 None:intergenic 45.0%
TTACTGGGAGATGAAGAGAG+AGG - chr1_3:4298834-4298853 None:intergenic 45.0%
TGGGAATGTGGCATTGTTTG+AGG + chr1_3:4298926-4298945 Msa0098370:intron 45.0%
! GGAAGGAGCAAACTAGTTTC+TGG - chr1_3:4299131-4299150 None:intergenic 45.0%
!! AAGGAACAATTGATGGCGCT+AGG + chr1_3:4299422-4299441 Msa0098370:intron 45.0%
GTAGACACAATACAGTCCTG+TGG + chr1_3:4299910-4299929 Msa0098370:CDS 45.0%
CTGCTGATGGTAAGCGATTT+CGG + chr1_3:4299944-4299963 Msa0098370:CDS 45.0%
ATGGTAAGCGATTTCGGACA+GGG + chr1_3:4299950-4299969 Msa0098370:CDS 45.0%
TGTTCCATTGAGTGCATCGA+CGG + chr1_3:4300107-4300126 Msa0098370:intron 45.0%
ATCTGCCTCGGTCTAATATG+TGG - chr1_3:4300471-4300490 None:intergenic 45.0%
! GACTGCTGTTTAGATGGTTC+CGG + chr1_3:4300599-4300618 Msa0098370:intron 45.0%
! ACTGCTGTTTAGATGGTTCC+GGG + chr1_3:4300600-4300619 Msa0098370:intron 45.0%
! CTTTTACGAAAAAGGCAGCC+CGG - chr1_3:4300621-4300640 None:intergenic 45.0%
! TCCTCCTCTTTTTGCATGGA+TGG - chr1_3:4300829-4300848 None:intergenic 45.0%
AGAGGAGGATTCTTCTCAAG+AGG + chr1_3:4300840-4300859 Msa0098370:CDS 45.0%
TGCATTTGCAATGCGCAAGT+AGG - chr1_3:4300913-4300932 None:intergenic 45.0%
TCCTACGATGATGATCTGCT+TGG + chr1_3:4301003-4301022 Msa0098370:CDS 45.0%
TCCAAGCAGATCATCATCGT+AGG - chr1_3:4301007-4301026 None:intergenic 45.0%
!! GGCTTTTTCCATTCAAGGCA+AGG - chr1_3:4301052-4301071 None:intergenic 45.0%
TGTGACAACAAGTTCACGGA+TGG + chr1_3:4301154-4301173 Msa0098370:three_prime_UTR 45.0%
TGGAGCAGTATGGTTCCATT+TGG + chr1_3:4301174-4301193 Msa0098370:three_prime_UTR 45.0%
CTCGAGAGTTACTAACCGTT+TGG + chr1_3:4296363-4296382 Msa0098370:five_prime_UTR 45.0%
! AACCGTTTGGAATTTGGGCA+TGG + chr1_3:4296376-4296395 Msa0098370:exon 45.0%
CTCCATGCCCAAATTCCAAA+CGG - chr1_3:4296381-4296400 None:intergenic 45.0%
! GTTTGGAATTTGGGCATGGA+GGG + chr1_3:4296380-4296399 Msa0098370:exon 45.0%
GAGATTATGATCCTGTGTGG+CGG - chr1_3:4296525-4296544 None:intergenic 45.0%
! CGCTTCCGATTTTTACTGAG+AGG - chr1_3:4296590-4296609 None:intergenic 45.0%
!! GAGAAAGGCTTTAGGAGGAT+CGG + chr1_3:4296625-4296644 Msa0098370:CDS 45.0%
ATGCACCCATCAACATTGAC+AGG + chr1_3:4296648-4296667 Msa0098370:CDS 45.0%
TATACAGCTGTAGGTTGCCT+TGG + chr1_3:4297001-4297020 Msa0098370:CDS 45.0%
ATACAGCTGTAGGTTGCCTT+GGG + chr1_3:4297002-4297021 Msa0098370:CDS 45.0%
GTTGAGCGATATCGTCAAAG+AGG + chr1_3:4297033-4297052 Msa0098370:CDS 45.0%
CGAAGCAAAATCAAGAGGAC+TGG - chr1_3:4297331-4297350 None:intergenic 45.0%
GATATTTGGGGGTGAGTTTG+AGG + chr1_3:4297502-4297521 Msa0098370:intron 45.0%
TGTGGTGTTTGCCTTGTGTA+TGG + chr1_3:4297823-4297842 Msa0098370:intron 45.0%
TAAGGTTGGAACCAAGGTTG+AGG - chr1_3:4297941-4297960 None:intergenic 45.0%
AGTAGCAGGACAAGTCACAA+AGG - chr1_3:4298303-4298322 None:intergenic 45.0%
! GTCTTTGCACTCACGTTTTG+TGG - chr1_3:4298513-4298532 None:intergenic 45.0%
TTACTGGGAGATGAAGAGAG+AGG - chr1_3:4298834-4298853 None:intergenic 45.0%
TGGGAATGTGGCATTGTTTG+AGG + chr1_3:4298926-4298945 Msa0098370:intron 45.0%
! GGAAGGAGCAAACTAGTTTC+TGG - chr1_3:4299131-4299150 None:intergenic 45.0%
!! AAGGAACAATTGATGGCGCT+AGG + chr1_3:4299422-4299441 Msa0098370:intron 45.0%
GTAGACACAATACAGTCCTG+TGG + chr1_3:4299910-4299929 Msa0098370:CDS 45.0%
CTGCTGATGGTAAGCGATTT+CGG + chr1_3:4299944-4299963 Msa0098370:CDS 45.0%
ATGGTAAGCGATTTCGGACA+GGG + chr1_3:4299950-4299969 Msa0098370:CDS 45.0%
TGTTCCATTGAGTGCATCGA+CGG + chr1_3:4300107-4300126 Msa0098370:intron 45.0%
ATCTGCCTCGGTCTAATATG+TGG - chr1_3:4300471-4300490 None:intergenic 45.0%
! GACTGCTGTTTAGATGGTTC+CGG + chr1_3:4300599-4300618 Msa0098370:intron 45.0%
! ACTGCTGTTTAGATGGTTCC+GGG + chr1_3:4300600-4300619 Msa0098370:intron 45.0%
! CTTTTACGAAAAAGGCAGCC+CGG - chr1_3:4300621-4300640 None:intergenic 45.0%
! TCCTCCTCTTTTTGCATGGA+TGG - chr1_3:4300829-4300848 None:intergenic 45.0%
AGAGGAGGATTCTTCTCAAG+AGG + chr1_3:4300840-4300859 Msa0098370:CDS 45.0%
TGCATTTGCAATGCGCAAGT+AGG - chr1_3:4300913-4300932 None:intergenic 45.0%
TCCTACGATGATGATCTGCT+TGG + chr1_3:4301003-4301022 Msa0098370:CDS 45.0%
TCCAAGCAGATCATCATCGT+AGG - chr1_3:4301007-4301026 None:intergenic 45.0%
!! GGCTTTTTCCATTCAAGGCA+AGG - chr1_3:4301052-4301071 None:intergenic 45.0%
TGTGACAACAAGTTCACGGA+TGG + chr1_3:4301154-4301173 Msa0098370:three_prime_UTR 45.0%
TGGAGCAGTATGGTTCCATT+TGG + chr1_3:4301174-4301193 Msa0098370:three_prime_UTR 45.0%
!! AATAAAAATATGATATATTT+AGG - chr1_3:4299287-4299306 None:intergenic 5.0%
!! AATAAAAATATGATATATTT+AGG - chr1_3:4299287-4299306 None:intergenic 5.0%
!! AATAAAAATATGATATATTT+AGG - chr1_3:4299287-4299306 None:intergenic 5.0%
!! AATAAAAATATGATATATTT+AGG - chr1_3:4299287-4299306 None:intergenic 5.0%
! CGTTTGGAATTTGGGCATGG+AGG + chr1_3:4296379-4296398 Msa0098370:exon 50.0%
TTGCAATTGCAGCCGCAGTT+TGG - chr1_3:4297148-4297167 None:intergenic 50.0%
GGTGTTTGCCTTGTGTATGG+TGG + chr1_3:4297826-4297845 Msa0098370:intron 50.0%
GCAGAGAACCACCATACACA+AGG - chr1_3:4297837-4297856 None:intergenic 50.0%
AGCCACTTCAACCTCTCTTG+AGG + chr1_3:4297909-4297928 Msa0098370:intron 50.0%
CACCTCAAGAGAGGTTGAAG+TGG - chr1_3:4297914-4297933 None:intergenic 50.0%
CACTTCAACCTCTCTTGAGG+TGG + chr1_3:4297912-4297931 Msa0098370:intron 50.0%
TGAGGAAACCACCTCAAGAG+AGG - chr1_3:4297923-4297942 None:intergenic 50.0%
TGAGGTGGTTTCCTCAACCT+TGG + chr1_3:4297927-4297946 Msa0098370:intron 50.0%
GGACTTGGGAAAAGGAGGAA+AGG - chr1_3:4298248-4298267 None:intergenic 50.0%
GCAGGACAAGTCACAAAGGA+AGG - chr1_3:4298299-4298318 None:intergenic 50.0%
CGTGAGTGCAAAGACAGATG+AGG + chr1_3:4298518-4298537 Msa0098370:intron 50.0%
!! GATAAGGCTTTAGGCGCAGA+AGG - chr1_3:4298756-4298775 None:intergenic 50.0%
GGTCAAGGCTGAACCAAATC+AGG - chr1_3:4299011-4299030 None:intergenic 50.0%
GACACAATACAGTCCTGTGG+AGG + chr1_3:4299913-4299932 Msa0098370:CDS 50.0%
GATGGTAAGCGATTTCGGAC+AGG + chr1_3:4299949-4299968 Msa0098370:CDS 50.0%
TGGTAAGCGATTTCGGACAG+GGG + chr1_3:4299951-4299970 Msa0098370:CDS 50.0%
GCAGCCATCCATGCAAAAAG+AGG + chr1_3:4300822-4300841 Msa0098370:CDS 50.0%
GCCATCCATGCAAAAAGAGG+AGG + chr1_3:4300825-4300844 Msa0098370:CDS 50.0%
!! CGTTTCTTTTCAGGGCCTAG+TGG - chr1_3:4300949-4300968 None:intergenic 50.0%
AGTTCACGGATGGAGCAGTA+TGG + chr1_3:4301164-4301183 Msa0098370:three_prime_UTR 50.0%
! CGTTTGGAATTTGGGCATGG+AGG + chr1_3:4296379-4296398 Msa0098370:exon 50.0%
TTGCAATTGCAGCCGCAGTT+TGG - chr1_3:4297148-4297167 None:intergenic 50.0%
GGTGTTTGCCTTGTGTATGG+TGG + chr1_3:4297826-4297845 Msa0098370:intron 50.0%
GCAGAGAACCACCATACACA+AGG - chr1_3:4297837-4297856 None:intergenic 50.0%
AGCCACTTCAACCTCTCTTG+AGG + chr1_3:4297909-4297928 Msa0098370:intron 50.0%
CACCTCAAGAGAGGTTGAAG+TGG - chr1_3:4297914-4297933 None:intergenic 50.0%
CACTTCAACCTCTCTTGAGG+TGG + chr1_3:4297912-4297931 Msa0098370:intron 50.0%
TGAGGAAACCACCTCAAGAG+AGG - chr1_3:4297923-4297942 None:intergenic 50.0%
TGAGGTGGTTTCCTCAACCT+TGG + chr1_3:4297927-4297946 Msa0098370:intron 50.0%
GGACTTGGGAAAAGGAGGAA+AGG - chr1_3:4298248-4298267 None:intergenic 50.0%
GCAGGACAAGTCACAAAGGA+AGG - chr1_3:4298299-4298318 None:intergenic 50.0%
CGTGAGTGCAAAGACAGATG+AGG + chr1_3:4298518-4298537 Msa0098370:intron 50.0%
!! GATAAGGCTTTAGGCGCAGA+AGG - chr1_3:4298756-4298775 None:intergenic 50.0%
GGTCAAGGCTGAACCAAATC+AGG - chr1_3:4299011-4299030 None:intergenic 50.0%
GACACAATACAGTCCTGTGG+AGG + chr1_3:4299913-4299932 Msa0098370:CDS 50.0%
GATGGTAAGCGATTTCGGAC+AGG + chr1_3:4299949-4299968 Msa0098370:CDS 50.0%
TGGTAAGCGATTTCGGACAG+GGG + chr1_3:4299951-4299970 Msa0098370:CDS 50.0%
GCAGCCATCCATGCAAAAAG+AGG + chr1_3:4300822-4300841 Msa0098370:CDS 50.0%
GCCATCCATGCAAAAAGAGG+AGG + chr1_3:4300825-4300844 Msa0098370:CDS 50.0%
!! CGTTTCTTTTCAGGGCCTAG+TGG - chr1_3:4300949-4300968 None:intergenic 50.0%
AGTTCACGGATGGAGCAGTA+TGG + chr1_3:4301164-4301183 Msa0098370:three_prime_UTR 50.0%
! CGTTTGGAATTTGGGCATGG+AGG + chr1_3:4296379-4296398 Msa0098370:exon 50.0%
TTGCAATTGCAGCCGCAGTT+TGG - chr1_3:4297148-4297167 None:intergenic 50.0%
GGTGTTTGCCTTGTGTATGG+TGG + chr1_3:4297826-4297845 Msa0098370:intron 50.0%
GCAGAGAACCACCATACACA+AGG - chr1_3:4297837-4297856 None:intergenic 50.0%
AGCCACTTCAACCTCTCTTG+AGG + chr1_3:4297909-4297928 Msa0098370:intron 50.0%
CACCTCAAGAGAGGTTGAAG+TGG - chr1_3:4297914-4297933 None:intergenic 50.0%
CACTTCAACCTCTCTTGAGG+TGG + chr1_3:4297912-4297931 Msa0098370:intron 50.0%
TGAGGAAACCACCTCAAGAG+AGG - chr1_3:4297923-4297942 None:intergenic 50.0%
TGAGGTGGTTTCCTCAACCT+TGG + chr1_3:4297927-4297946 Msa0098370:intron 50.0%
GGACTTGGGAAAAGGAGGAA+AGG - chr1_3:4298248-4298267 None:intergenic 50.0%
GCAGGACAAGTCACAAAGGA+AGG - chr1_3:4298299-4298318 None:intergenic 50.0%
CGTGAGTGCAAAGACAGATG+AGG + chr1_3:4298518-4298537 Msa0098370:intron 50.0%
!! GATAAGGCTTTAGGCGCAGA+AGG - chr1_3:4298756-4298775 None:intergenic 50.0%
GGTCAAGGCTGAACCAAATC+AGG - chr1_3:4299011-4299030 None:intergenic 50.0%
GACACAATACAGTCCTGTGG+AGG + chr1_3:4299913-4299932 Msa0098370:CDS 50.0%
GATGGTAAGCGATTTCGGAC+AGG + chr1_3:4299949-4299968 Msa0098370:CDS 50.0%
TGGTAAGCGATTTCGGACAG+GGG + chr1_3:4299951-4299970 Msa0098370:CDS 50.0%
GCAGCCATCCATGCAAAAAG+AGG + chr1_3:4300822-4300841 Msa0098370:CDS 50.0%
GCCATCCATGCAAAAAGAGG+AGG + chr1_3:4300825-4300844 Msa0098370:CDS 50.0%
!! CGTTTCTTTTCAGGGCCTAG+TGG - chr1_3:4300949-4300968 None:intergenic 50.0%
AGTTCACGGATGGAGCAGTA+TGG + chr1_3:4301164-4301183 Msa0098370:three_prime_UTR 50.0%
! CGTTTGGAATTTGGGCATGG+AGG + chr1_3:4296379-4296398 Msa0098370:exon 50.0%
TTGCAATTGCAGCCGCAGTT+TGG - chr1_3:4297148-4297167 None:intergenic 50.0%
GGTGTTTGCCTTGTGTATGG+TGG + chr1_3:4297826-4297845 Msa0098370:intron 50.0%
GCAGAGAACCACCATACACA+AGG - chr1_3:4297837-4297856 None:intergenic 50.0%
AGCCACTTCAACCTCTCTTG+AGG + chr1_3:4297909-4297928 Msa0098370:intron 50.0%
CACCTCAAGAGAGGTTGAAG+TGG - chr1_3:4297914-4297933 None:intergenic 50.0%
CACTTCAACCTCTCTTGAGG+TGG + chr1_3:4297912-4297931 Msa0098370:intron 50.0%
TGAGGAAACCACCTCAAGAG+AGG - chr1_3:4297923-4297942 None:intergenic 50.0%
TGAGGTGGTTTCCTCAACCT+TGG + chr1_3:4297927-4297946 Msa0098370:intron 50.0%
GGACTTGGGAAAAGGAGGAA+AGG - chr1_3:4298248-4298267 None:intergenic 50.0%
GCAGGACAAGTCACAAAGGA+AGG - chr1_3:4298299-4298318 None:intergenic 50.0%
CGTGAGTGCAAAGACAGATG+AGG + chr1_3:4298518-4298537 Msa0098370:intron 50.0%
!! GATAAGGCTTTAGGCGCAGA+AGG - chr1_3:4298756-4298775 None:intergenic 50.0%
GGTCAAGGCTGAACCAAATC+AGG - chr1_3:4299011-4299030 None:intergenic 50.0%
GACACAATACAGTCCTGTGG+AGG + chr1_3:4299913-4299932 Msa0098370:CDS 50.0%
GATGGTAAGCGATTTCGGAC+AGG + chr1_3:4299949-4299968 Msa0098370:CDS 50.0%
TGGTAAGCGATTTCGGACAG+GGG + chr1_3:4299951-4299970 Msa0098370:CDS 50.0%
GCAGCCATCCATGCAAAAAG+AGG + chr1_3:4300822-4300841 Msa0098370:CDS 50.0%
GCCATCCATGCAAAAAGAGG+AGG + chr1_3:4300825-4300844 Msa0098370:CDS 50.0%
!! CGTTTCTTTTCAGGGCCTAG+TGG - chr1_3:4300949-4300968 None:intergenic 50.0%
AGTTCACGGATGGAGCAGTA+TGG + chr1_3:4301164-4301183 Msa0098370:three_prime_UTR 50.0%
TGGAATTTGGGCATGGAGGG+TGG + chr1_3:4296383-4296402 Msa0098370:exon 55.0%
CGGCGACACCGTTTCGATTA+TGG - chr1_3:4296505-4296524 None:intergenic 55.0%
CGCTCAACGCAGAAATCCCA+AGG - chr1_3:4297021-4297040 None:intergenic 55.0%
!! GGCTTTAGGCGCAGAAGGAA+AGG - chr1_3:4298751-4298770 None:intergenic 55.0%
GCTTACCATCAGCAGTCTGC+TGG - chr1_3:4299939-4299958 None:intergenic 55.0%
GGTAAGCGATTTCGGACAGG+GGG + chr1_3:4299952-4299971 Msa0098370:CDS 55.0%
TGTGCCGTCGATGCACTCAA+TGG - chr1_3:4300114-4300133 None:intergenic 55.0%
TGGAATTTGGGCATGGAGGG+TGG + chr1_3:4296383-4296402 Msa0098370:exon 55.0%
CGGCGACACCGTTTCGATTA+TGG - chr1_3:4296505-4296524 None:intergenic 55.0%
CGCTCAACGCAGAAATCCCA+AGG - chr1_3:4297021-4297040 None:intergenic 55.0%
!! GGCTTTAGGCGCAGAAGGAA+AGG - chr1_3:4298751-4298770 None:intergenic 55.0%
GCTTACCATCAGCAGTCTGC+TGG - chr1_3:4299939-4299958 None:intergenic 55.0%
GGTAAGCGATTTCGGACAGG+GGG + chr1_3:4299952-4299971 Msa0098370:CDS 55.0%
TGTGCCGTCGATGCACTCAA+TGG - chr1_3:4300114-4300133 None:intergenic 55.0%
TGGAATTTGGGCATGGAGGG+TGG + chr1_3:4296383-4296402 Msa0098370:exon 55.0%
CGGCGACACCGTTTCGATTA+TGG - chr1_3:4296505-4296524 None:intergenic 55.0%
CGCTCAACGCAGAAATCCCA+AGG - chr1_3:4297021-4297040 None:intergenic 55.0%
!! GGCTTTAGGCGCAGAAGGAA+AGG - chr1_3:4298751-4298770 None:intergenic 55.0%
GCTTACCATCAGCAGTCTGC+TGG - chr1_3:4299939-4299958 None:intergenic 55.0%
GGTAAGCGATTTCGGACAGG+GGG + chr1_3:4299952-4299971 Msa0098370:CDS 55.0%
TGTGCCGTCGATGCACTCAA+TGG - chr1_3:4300114-4300133 None:intergenic 55.0%
TGGAATTTGGGCATGGAGGG+TGG + chr1_3:4296383-4296402 Msa0098370:exon 55.0%
CGGCGACACCGTTTCGATTA+TGG - chr1_3:4296505-4296524 None:intergenic 55.0%
CGCTCAACGCAGAAATCCCA+AGG - chr1_3:4297021-4297040 None:intergenic 55.0%
!! GGCTTTAGGCGCAGAAGGAA+AGG - chr1_3:4298751-4298770 None:intergenic 55.0%
GCTTACCATCAGCAGTCTGC+TGG - chr1_3:4299939-4299958 None:intergenic 55.0%
GGTAAGCGATTTCGGACAGG+GGG + chr1_3:4299952-4299971 Msa0098370:CDS 55.0%
TGTGCCGTCGATGCACTCAA+TGG - chr1_3:4300114-4300133 None:intergenic 55.0%
AAGCGATTTCGGACAGGGGG+TGG + chr1_3:4299955-4299974 Msa0098370:CDS 60.0%
GGACAGGGGGTGGTGTATTG+TGG + chr1_3:4299965-4299984 Msa0098370:CDS 60.0%
AAGCGATTTCGGACAGGGGG+TGG + chr1_3:4299955-4299974 Msa0098370:CDS 60.0%
GGACAGGGGGTGGTGTATTG+TGG + chr1_3:4299965-4299984 Msa0098370:CDS 60.0%
AAGCGATTTCGGACAGGGGG+TGG + chr1_3:4299955-4299974 Msa0098370:CDS 60.0%
GGACAGGGGGTGGTGTATTG+TGG + chr1_3:4299965-4299984 Msa0098370:CDS 60.0%
AAGCGATTTCGGACAGGGGG+TGG + chr1_3:4299955-4299974 Msa0098370:CDS 60.0%
GGACAGGGGGTGGTGTATTG+TGG + chr1_3:4299965-4299984 Msa0098370:CDS 60.0%
!! AAACGGTGTCGCCGCCACAC+AGG + chr1_3:4296511-4296530 Msa0098370:CDS 65.0%
! AGCAGTCTGCTGGCCTCCAC+AGG - chr1_3:4299929-4299948 None:intergenic 65.0%
GGAGGCCAGCAGACTGCTGA+TGG + chr1_3:4299931-4299950 Msa0098370:CDS 65.0%
!! AAACGGTGTCGCCGCCACAC+AGG + chr1_3:4296511-4296530 Msa0098370:CDS 65.0%
! AGCAGTCTGCTGGCCTCCAC+AGG - chr1_3:4299929-4299948 None:intergenic 65.0%
GGAGGCCAGCAGACTGCTGA+TGG + chr1_3:4299931-4299950 Msa0098370:CDS 65.0%
!! AAACGGTGTCGCCGCCACAC+AGG + chr1_3:4296511-4296530 Msa0098370:CDS 65.0%
! AGCAGTCTGCTGGCCTCCAC+AGG - chr1_3:4299929-4299948 None:intergenic 65.0%
GGAGGCCAGCAGACTGCTGA+TGG + chr1_3:4299931-4299950 Msa0098370:CDS 65.0%
!! AAACGGTGTCGCCGCCACAC+AGG + chr1_3:4296511-4296530 Msa0098370:CDS 65.0%
! AGCAGTCTGCTGGCCTCCAC+AGG - chr1_3:4299929-4299948 None:intergenic 65.0%
GGAGGCCAGCAGACTGCTGA+TGG + chr1_3:4299931-4299950 Msa0098370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4296358 4301360 4296358 ID=Msa0098370;Name=Msa0098370
chr1_3 mRNA 4296358 4301360 4296358 ID=Msa0098370-mRNA-1;Parent=Msa0098370;Name=Msa0098370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=37|1|1|1|1|1|4|301|262
chr1_3 exon 4296358 4296669 4296358 ID=Msa0098370-mRNA-1:exon:1438;Parent=Msa0098370-mRNA-1
chr1_3 exon 4296949 4297054 4296949 ID=Msa0098370-mRNA-1:exon:1439;Parent=Msa0098370-mRNA-1
chr1_3 exon 4299910 4300053 4299910 ID=Msa0098370-mRNA-1:exon:1440;Parent=Msa0098370-mRNA-1
chr1_3 exon 4300796 4301360 4300796 ID=Msa0098370-mRNA-1:exon:1441;Parent=Msa0098370-mRNA-1
chr1_3 five_prime_UTR 4296358 4296394 4296358 ID=Msa0098370-mRNA-1:five_prime_utr;Parent=Msa0098370-mRNA-1
chr1_3 CDS 4296395 4296669 4296395 ID=Msa0098370-mRNA-1:cds;Parent=Msa0098370-mRNA-1
chr1_3 CDS 4296949 4297054 4296949 ID=Msa0098370-mRNA-1:cds;Parent=Msa0098370-mRNA-1
chr1_3 CDS 4299910 4300053 4299910 ID=Msa0098370-mRNA-1:cds;Parent=Msa0098370-mRNA-1
chr1_3 CDS 4300796 4301059 4300796 ID=Msa0098370-mRNA-1:cds;Parent=Msa0098370-mRNA-1
chr1_3 three_prime_UTR 4301060 4301360 4301060 ID=Msa0098370-mRNA-1:three_prime_utr;Parent=Msa0098370-mRNA-1
Gene Sequence

>Msa0098370

ATGGAGGGTGGTGAGAACATTCTAGATGCCATTAACTACGAAGAAGAAGACGATGTTGAGATGGTTGATGTTGAAGAGGGTGAATTGGTTGAAGAAGAAGAACAAGACCATAATCGAAACGGTGTCGCCGCCACACAGGATCATAATCTCATTCATGAATCAGATAGTAAGAATATTAATCAAAAACCAAAACCTCTCAGTAAAAATCGGAAGCGTAAAAACAAGAGAAAGAGAAAGGCTTTAGGAGGATCGGATGCACCCATCAACATTGACAGGTTTGTGATAGAGACATGTCGGCGTCTGAAAGAGAAAAAATCATACATGGTATATACAGCTGTAGGTTGCCTTGGGATTTCTGCGTTGAGCGATATCGTCAAAGAGGTAGACACAATACAGTCCTGTGGAGGCCAGCAGACTGCTGATGGTAAGCGATTTCGGACAGGGGGTGGTGTATTGTGGAACATCATCAAAGTTCGAGAACCAAATGCTTACAAAGAGATAATGAAAAAAGCAAGAGAGTTTGAGAAGCAATTCAGGCAGCCAAGTTTTAAGCAGCCATCCATGCAAAAAGAGGAGGATTCTTCTCAAGAGGTGCCTTGTACATTTTCTAGTGCGCATCAGGGCCATGTTTCTGACAATCCTACTTGCGCATTGCAAATGCAAGATCAAGATAAACCACTAGGCCCTGAAAAGAAACGTGTTCCTGTTCATGACAGATTGAGAATACCTGTTTCCTACGATGATGATCTGCTTGGAGCAAGCGTTGATAATGATGTAACCTTGCCTTGA
Protein sequence

>Msa0098370

MEGGENILDAINYEEEDDVEMVDVEEGELVEEEEQDHNRNGVAATQDHNLIHESDSKNINQKPKPLSKNRKRKNKRKRKALGGSDAPINIDRFVIETCRRLKEKKSYMVYTAVGCLGISALSDIVKEVDTIQSCGGQQTADGKRFRTGGGVLWNIIKVREPNAYKEIMKKAREFEKQFRQPSFKQPSMQKEEDSSQEVPCTFSSAHQGHVSDNPTCALQMQDQDKPLGPEKKRVPVHDRLRIPVSYDDDLLGASVDNDVTLP*