AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426030 MtrunA17_Chr4g0038011 97.970 197 4 0 1 197 793 989 2.93e-128 384
Msa1426030 MtrunA17_Chr4g0038031 81.579 190 35 0 7 196 445 634 8.26e-90 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426030 AT1G50200.1 67.539 191 61 1 8 197 813 1003 6.72e-63 210
Msa1426030 AT1G50200.2 64.824 199 61 2 8 197 813 1011 3.17e-60 202

Find 64 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGATTAATAAATTAAT+TGG 0.176205 tig0025935:+66283 Msa1426030:intergenic
CATTACAGAGTGTGCTTTGA+TGG 0.251134 tig0025935:-66212 Msa1426030:three_prime_UTR
TTCCAATTAATTTATTAATC+TGG 0.264222 tig0025935:-66285 Msa1426030:three_prime_UTR
CCCCTTCTGAGTGATTTATA+CGG 0.322501 tig0025935:+66318 Msa1426030:intergenic
CCTCTCGTGTGTTTGAGATA+TGG 0.330074 tig0025935:+69272 Msa1426030:intergenic
ATTGGATTGATTGATTTAGA+AGG 0.330529 tig0025935:-66138 Msa1426030:three_prime_UTR
GACCAAGATTGCCCTACTTC+AGG 0.355901 tig0025935:-67904 Msa1426030:intron
TGTTCAAGTGTAATAGCAAT+TGG 0.373317 tig0025935:-66156 Msa1426030:three_prime_UTR
TGCTTCTGATGCAATGAAAA+TGG 0.378251 tig0025935:-69173 Msa1426030:exon
AGAATGGCTGAGTAATGCTT+TGG 0.394510 tig0025935:-67285 Msa1426030:CDS
GAATGGCTGAGTAATGCTTT+GGG 0.404215 tig0025935:-67284 Msa1426030:CDS
TGCATATCTCACGTTAATGT+TGG 0.411098 tig0025935:-67635 Msa1426030:CDS
TACCTGAAGTAGGGCAATCT+TGG 0.411861 tig0025935:+67902 Msa1426030:intergenic
CTCTCGTGTGTTTGAGATAT+GGG 0.417253 tig0025935:+69273 Msa1426030:intergenic
ATTTCAGCTTTCTTAGCTGC+AGG 0.437519 tig0025935:+67930 Msa1426030:intergenic
GATGAAGCGGCTAAGCTAGA+AGG 0.439209 tig0025935:-69127 Msa1426030:CDS
TACTCTCTAGTTCAATTTCA+CGG 0.450028 tig0025935:+66356 Msa1426030:intergenic
CATCATATAATACCTGAAGT+AGG 0.455474 tig0025935:+67892 Msa1426030:intergenic
AGAAGGAAGTTTGCTGGAAG+AGG 0.463523 tig0025935:-69110 Msa1426030:intron
GTGCCGGAGAAAGGAGATAA+AGG 0.472153 tig0025935:-67323 Msa1426030:CDS
GGAAAAGGAGGTCTTGCAAC+GGG 0.472528 tig0025935:-67236 Msa1426030:CDS
GGGAGATGTGGTAAAGGAAA+AGG 0.476017 tig0025935:-67251 Msa1426030:CDS
GCATATCTCACGTTAATGTT+GGG 0.483698 tig0025935:-67634 Msa1426030:CDS
ATGCTTTGGGGCCACTGAAA+GGG 0.487479 tig0025935:-67271 Msa1426030:CDS
TAAGCTAGAAGGAAGTTTGC+TGG 0.488518 tig0025935:-69116 Msa1426030:CDS
TGTAGTGTGTGCTGGGGTGC+CGG 0.494475 tig0025935:-67339 Msa1426030:CDS
TTACCTTTATCTCCTTTCTC+CGG 0.495540 tig0025935:+67320 Msa1426030:intergenic
TTGGATTGATTGATTTAGAA+GGG 0.498975 tig0025935:-66137 Msa1426030:three_prime_UTR
GCTGAGGAGGGAATTGCTAA+AGG 0.500043 tig0025935:-69229 Msa1426030:five_prime_UTR
ATTGATTGATTTAGAAGGGA+AGG 0.509018 tig0025935:-66133 Msa1426030:three_prime_UTR
TGTGCTGGGGTGCCGGAGAA+AGG 0.514670 tig0025935:-67332 Msa1426030:CDS
AACAAAGCTGTAGTGTGTGC+TGG 0.518252 tig0025935:-67347 Msa1426030:CDS
AGGAGGTCTTGCAACGGGAC+AGG 0.521507 tig0025935:-67231 Msa1426030:intron
CAGAGTGTGCTTTGATGGCA+AGG 0.522222 tig0025935:-66207 Msa1426030:three_prime_UTR
TTCCGTATAAATCACTCAGA+AGG 0.523355 tig0025935:-66320 Msa1426030:three_prime_UTR
TCCGTATAAATCACTCAGAA+GGG 0.526568 tig0025935:-66319 Msa1426030:three_prime_UTR
GAAAGGAGATAAAGGTAAGC+TGG 0.527245 tig0025935:-67315 Msa1426030:CDS
TACAAAAGTCATTGATCAGA+AGG 0.530377 tig0025935:-67582 Msa1426030:intron
AATGCTTTGGGGCCACTGAA+AGG 0.530573 tig0025935:-67272 Msa1426030:CDS
ATCATATAATACCTGAAGTA+GGG 0.532869 tig0025935:+67893 Msa1426030:intergenic
GCTGATCTAGCTGTTTCAGA+TGG 0.536347 tig0025935:-67668 Msa1426030:CDS
ACAAAGCTGTAGTGTGTGCT+GGG 0.548423 tig0025935:-67346 Msa1426030:CDS
TTACCACATCTCCCTTTCAG+TGG 0.549551 tig0025935:+67260 Msa1426030:intergenic
CTGATCTAGCTGTTTCAGAT+GGG 0.557727 tig0025935:-67667 Msa1426030:CDS
CTGAAAGGGAGATGTGGTAA+AGG 0.558294 tig0025935:-67257 Msa1426030:CDS
TGTAACGTTAACAGCTGAGA+AGG 0.569754 tig0025935:-67690 Msa1426030:CDS
CTCACACGTAAATGAGGCTA+TGG 0.583114 tig0025935:-66400 Msa1426030:CDS
AGATGCCTCACACGTAAATG+AGG 0.584387 tig0025935:-66406 Msa1426030:CDS
TTGTGACAGCTGTTATTCTG+CGG 0.594446 tig0025935:+69203 Msa1426030:intergenic
AGATGTGGTAAAGGAAAAGG+AGG 0.595385 tig0025935:-67248 Msa1426030:CDS
CGATGTTGCAGCAGTTCGTG+AGG 0.602573 tig0025935:-67609 Msa1426030:CDS
TTCATCTTTGAAAAGCAATG+TGG 0.602709 tig0025935:-67967 Msa1426030:CDS
AATGGCTGAGTAATGCTTTG+GGG 0.604194 tig0025935:-67283 Msa1426030:CDS
TGAGAAGCAAGTAGATGAAG+CGG 0.615185 tig0025935:-69140 Msa1426030:CDS
TAAACAGGGATTGTCAGTGA+TGG 0.616674 tig0025935:-67393 Msa1426030:intron
CGTATAAATCACTCAGAAGG+GGG 0.617456 tig0025935:-66317 Msa1426030:three_prime_UTR
CATAGCCTCATTTACGTGTG+AGG 0.628945 tig0025935:+66401 Msa1426030:intergenic
CCGTATAAATCACTCAGAAG+GGG 0.629565 tig0025935:-66318 Msa1426030:three_prime_UTR
GTAAGCTGGATGTATCAGAA+TGG 0.647412 tig0025935:-67301 Msa1426030:CDS
GGGCCACTGAAAGGGAGATG+TGG 0.655092 tig0025935:-67263 Msa1426030:CDS
AGGAAAAGGAGGTCTTGCAA+CGG 0.669184 tig0025935:-67237 Msa1426030:CDS
CCATATCTCAAACACACGAG+AGG 0.696552 tig0025935:-69272 Msa1426030:five_prime_UTR
GTATAAATCACTCAGAAGGG+GGG 0.703292 tig0025935:-66316 Msa1426030:three_prime_UTR
CAAAGCTGTAGTGTGTGCTG+GGG 0.725318 tig0025935:-67345 Msa1426030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAATAATTTTTATTTT+TGG - tig0025935:66668-66687 Msa1426030:intron 0.0%
!!! CATGATTTTGAAATATATAT+AGG + tig0025935:66470-66489 Msa1426030:intergenic 15.0%
!!! ATGTAATGATCTAAAATTAT+TGG + tig0025935:67058-67077 Msa1426030:intergenic 15.0%
!! TTTAATATCATAATTCTTGT+AGG - tig0025935:67564-67583 Msa1426030:intron 15.0%
!! AATGACATAATATATGAAAT+GGG + tig0025935:68135-68154 Msa1426030:intergenic 15.0%
!! TAATGACATAATATATGAAA+TGG + tig0025935:68136-68155 Msa1426030:intergenic 15.0%
!! ATTTCATATATTATGTCATT+AGG - tig0025935:68135-68154 Msa1426030:intron 15.0%
!! ACACAAAAATATAATTACAT+AGG - tig0025935:68296-68315 Msa1426030:intron 15.0%
!!! TTTATGAACGTTTTTTATAT+AGG - tig0025935:68351-68370 Msa1426030:intron 15.0%
!!! TTTTATATTGAAAGAGAAAA+AGG - tig0025935:68533-68552 Msa1426030:intron 15.0%
!! TTTATATTGAAAGAGAAAAA+GGG - tig0025935:68534-68553 Msa1426030:intron 15.0%
!!! TTATAGTTTTGAATTTCTTA+TGG - tig0025935:68738-68757 Msa1426030:intron 15.0%
!! TTCCAATTAATTTATTAATC+TGG - tig0025935:69044-69063 Msa1426030:intron 15.0%
!! ATCCAGATTAATAAATTAAT+TGG + tig0025935:69049-69068 Msa1426030:intergenic 15.0%
!!! TGTTTAATACATGAATTTTT+AGG - tig0025935:69087-69106 Msa1426030:intron 15.0%
!!! GTTTAATACATGAATTTTTA+GGG - tig0025935:69088-69107 Msa1426030:intron 15.0%
!! ATTCGTAATAATTAGCAATT+CGG + tig0025935:66419-66438 Msa1426030:intergenic 20.0%
!! AATTGCTAATTATTACGAAT+AGG - tig0025935:66419-66438 Msa1426030:intron 20.0%
!! AAAATCATGATCTAATATGA+AGG - tig0025935:66481-66500 Msa1426030:intron 20.0%
!! TATAATTGAAGATGTAATGA+GGG + tig0025935:66861-66880 Msa1426030:intergenic 20.0%
!!! AATGATCTAAAATTATTGGT+GGG + tig0025935:67054-67073 Msa1426030:intergenic 20.0%
!!! TAATGATCTAAAATTATTGG+TGG + tig0025935:67055-67074 Msa1426030:intergenic 20.0%
!! GAATTATGATATTAAACTCT+AGG + tig0025935:67560-67579 Msa1426030:intergenic 20.0%
!! ATGACATAATATATGAAATG+GGG + tig0025935:68134-68153 Msa1426030:intergenic 20.0%
!! AAATGACATGATATATGAAA+TGG + tig0025935:68184-68203 Msa1426030:intergenic 20.0%
!!! TTCATATATCATGTCATTTA+AGG - tig0025935:68185-68204 Msa1426030:intron 20.0%
!! AAAAAACGTTCATAAAAACA+AGG + tig0025935:68347-68366 Msa1426030:intergenic 20.0%
!! AGAATGATAAAAAGTTGTTT+AGG + tig0025935:68379-68398 Msa1426030:intergenic 20.0%
!!! ATGGTTTTCAAAATTTTGAA+TGG - tig0025935:68444-68463 Msa1426030:intron 20.0%
!! ATGATCTAATATGAAGGTTT+TGG - tig0025935:66487-66506 Msa1426030:intron 25.0%
! ATATTCTAACAGTGTAAACA+GGG + tig0025935:66694-66713 Msa1426030:intergenic 25.0%
! TGTTTACACTGTTAGAATAT+GGG - tig0025935:66694-66713 Msa1426030:intron 25.0%
! CTATAATTGAAGATGTAATG+AGG + tig0025935:66862-66881 Msa1426030:intergenic 25.0%
!!! ACACACACATTTTACTTTTT+TGG - tig0025935:66916-66935 Msa1426030:intron 25.0%
! CCTTCAAAAAAGTTACTAAA+CGG - tig0025935:67020-67039 Msa1426030:intron 25.0%
! ATAACCCACAAATCTTAATA+TGG - tig0025935:67150-67169 Msa1426030:intron 25.0%
! ACTTCCATATTAAGATTTGT+GGG + tig0025935:67157-67176 Msa1426030:intergenic 25.0%
! TACTTCCATATTAAGATTTG+TGG + tig0025935:67158-67177 Msa1426030:intergenic 25.0%
! ATCATATAATACCTGAAGTA+GGG + tig0025935:67439-67458 Msa1426030:intergenic 25.0%
!! ACAACTTTTTATCATTCTCT+TGG - tig0025935:68381-68400 Msa1426030:intron 25.0%
! TTTATCATTCTCTTGGATAT+AGG - tig0025935:68388-68407 Msa1426030:intron 25.0%
! TATTTGAAAATTGAGCTACT+AGG + tig0025935:68598-68617 Msa1426030:intergenic 25.0%
!! GACAATCACTTAAATTTTCA+TGG - tig0025935:68627-68646 Msa1426030:intron 25.0%
! ATTATCACGTACTAATATGT+TGG - tig0025935:68800-68819 Msa1426030:intron 25.0%
!! AATATGTTGGCTATTTATGA+AGG - tig0025935:68813-68832 Msa1426030:intron 25.0%
!! ATATGTTGGCTATTTATGAA+GGG - tig0025935:68814-68833 Msa1426030:intron 25.0%
!! ATTGGATTGATTGATTTAGA+AGG - tig0025935:69191-69210 Msa1426030:five_prime_UTR 25.0%
!! TTGGATTGATTGATTTAGAA+GGG - tig0025935:69192-69211 Msa1426030:five_prime_UTR 25.0%
TTTGTCTAAATTCTGATAGC+AGG - tig0025935:66258-66277 Msa1426030:three_prime_UTR 30.0%
TACTTTCCAGTATGTTGAAT+AGG + tig0025935:66515-66534 Msa1426030:intergenic 30.0%
CTCTATTGAATTAAAGTGCA+CGG - tig0025935:66557-66576 Msa1426030:intron 30.0%
CATATTCTAACAGTGTAAAC+AGG + tig0025935:66695-66714 Msa1426030:intergenic 30.0%
CTGTTTACACTGTTAGAATA+TGG - tig0025935:66693-66712 Msa1426030:intron 30.0%
AATATGTGATGTGTAACCAT+GGG + tig0025935:66957-66976 Msa1426030:intergenic 30.0%
AAATATGTGATGTGTAACCA+TGG + tig0025935:66958-66977 Msa1426030:intergenic 30.0%
!!! CCGTTTAGTAACTTTTTTGA+AGG + tig0025935:67023-67042 Msa1426030:intergenic 30.0%
AGAAAAGTCACTTAAGAACT+AGG + tig0025935:67114-67133 Msa1426030:intergenic 30.0%
GAAACTTTCTGTGACAAAAA+GGG + tig0025935:67345-67364 Msa1426030:intergenic 30.0%
TGAAACTTTCTGTGACAAAA+AGG + tig0025935:67346-67365 Msa1426030:intergenic 30.0%
! TTCATCTTTGAAAAGCAATG+TGG - tig0025935:67362-67381 Msa1426030:CDS 30.0%
CATCATATAATACCTGAAGT+AGG + tig0025935:67440-67459 Msa1426030:intergenic 30.0%
TACAAAAGTCATTGATCAGA+AGG - tig0025935:67747-67766 Msa1426030:intron 30.0%
GACAGAAAATATAATTGCCA+AGG + tig0025935:67881-67900 Msa1426030:intergenic 30.0%
TGTCAACATCAAACATTAAC+TGG - tig0025935:67897-67916 Msa1426030:intron 30.0%
TTGATCATAATACCCTTGTT+TGG - tig0025935:68269-68288 Msa1426030:intron 30.0%
AAACCATTAAACACAATCCA+TGG + tig0025935:68431-68450 Msa1426030:intergenic 30.0%
AAGAGTTATCTAAGTTTGTG+TGG - tig0025935:68562-68581 Msa1426030:intron 30.0%
!!! GATCTACTTTGAAATGCTTT+TGG - tig0025935:68688-68707 Msa1426030:intron 30.0%
! TACTCTCTAGTTCAATTTCA+CGG + tig0025935:68976-68995 Msa1426030:intergenic 30.0%
TGTTCAAGTGTAATAGCAAT+TGG - tig0025935:69173-69192 Msa1426030:exon 30.0%
! ATTGATTGATTTAGAAGGGA+AGG - tig0025935:69196-69215 Msa1426030:five_prime_UTR 30.0%
TGCTTCTGATGCAATGAAAA+TGG - tig0025935:66156-66175 Msa1426030:three_prime_UTR 35.0%
! CTTGTGTTTTCCATTCTACT+TGG - tig0025935:66281-66300 Msa1426030:three_prime_UTR 35.0%
! GTTTTCCATTCTACTTGGTT+TGG - tig0025935:66286-66305 Msa1426030:three_prime_UTR 35.0%
TCGCAGTTAATGAATGAAGT+TGG - tig0025935:66348-66367 Msa1426030:exon 35.0%
TTGGAACCTATTCAACATAC+TGG - tig0025935:66506-66525 Msa1426030:intron 35.0%
CGTGCACTTTAATTCAATAG+AGG + tig0025935:66559-66578 Msa1426030:intergenic 35.0%
ATACATGAAACCCCTTTCTT+GGG + tig0025935:66650-66669 Msa1426030:intergenic 35.0%
AATACATGAAACCCCTTTCT+TGG + tig0025935:66651-66670 Msa1426030:intergenic 35.0%
ACTGTTAGAATATGGGTGTT+TGG - tig0025935:66701-66720 Msa1426030:intron 35.0%
! GTGTTTGGAATAGCTTATCT+GGG - tig0025935:66716-66735 Msa1426030:intron 35.0%
!!! ACTTTTTTGGAGATCTCAAG+TGG - tig0025935:66929-66948 Msa1426030:intron 35.0%
CTAAAATTATTGGTGGGAGT+GGG + tig0025935:67048-67067 Msa1426030:intergenic 35.0%
! TCTAAAATTATTGGTGGGAG+TGG + tig0025935:67049-67068 Msa1426030:intergenic 35.0%
! CTTAAGTGACTTTTCTCCAA+TGG - tig0025935:67118-67137 Msa1426030:intron 35.0%
TAAGGAAATCAGTGTCAATC+AGG + tig0025935:67267-67286 Msa1426030:intergenic 35.0%
AGCATTATCTCTATCTGCTA+AGG + tig0025935:67285-67304 Msa1426030:intergenic 35.0%
CAATAAGTAACAGACAAACG+TGG + tig0025935:67501-67520 Msa1426030:intergenic 35.0%
TGCATATCTCACGTTAATGT+TGG - tig0025935:67694-67713 Msa1426030:CDS 35.0%
GCATATCTCACGTTAATGTT+GGG - tig0025935:67695-67714 Msa1426030:CDS 35.0%
CAACTCAACACATAATAACG+AGG + tig0025935:67824-67843 Msa1426030:intergenic 35.0%
! AGCAATGTTTGCTGATAAAC+AGG - tig0025935:67921-67940 Msa1426030:CDS 35.0%
! GCAATGTTTGCTGATAAACA+GGG - tig0025935:67922-67941 Msa1426030:CDS 35.0%
TTACCTTTATCTCCTTTCTC+CGG + tig0025935:68012-68031 Msa1426030:intergenic 35.0%
! TTTTGTGTTCGTCCAAACAA+GGG + tig0025935:68284-68303 Msa1426030:intergenic 35.0%
! TTTTTGTGTTCGTCCAAACA+AGG + tig0025935:68285-68304 Msa1426030:intergenic 35.0%
CGTTCATAAAAACAAGGACT+CGG + tig0025935:68341-68360 Msa1426030:intergenic 35.0%
! TTGAAATGCTTTTGGCCAAA+AGG - tig0025935:68696-68715 Msa1426030:intron 35.0%
GCTTCAGTCATAAACATCTT+AGG - tig0025935:68760-68779 Msa1426030:intron 35.0%
!!! TTTGCACCATCCTTTTTTTC+AGG - tig0025935:68896-68915 Msa1426030:intron 35.0%
!!! TTGCACCATCCTTTTTTTCA+GGG - tig0025935:68897-68916 Msa1426030:intron 35.0%
TTCCGTATAAATCACTCAGA+AGG - tig0025935:69009-69028 Msa1426030:intron 35.0%
TCCGTATAAATCACTCAGAA+GGG - tig0025935:69010-69029 Msa1426030:intron 35.0%
! CTCTCGTGTGTTTGAGATAT+GGG + tig0025935:66059-66078 Msa0889580:intergenic 40.0%
!! AGCTTTTGCACTTTTAGCTG+AGG - tig0025935:66084-66103 Msa1426030:three_prime_UTR 40.0%
!! TTTTGCACTTTTAGCTGAGG+AGG - tig0025935:66087-66106 Msa1426030:three_prime_UTR 40.0%
!! TTTGCACTTTTAGCTGAGGA+GGG - tig0025935:66088-66107 Msa1426030:three_prime_UTR 40.0%
TTGTGACAGCTGTTATTCTG+CGG + tig0025935:66129-66148 Msa1426030:intergenic 40.0%
TGAGAAGCAAGTAGATGAAG+CGG - tig0025935:66189-66208 Msa1426030:three_prime_UTR 40.0%
TAAGCTAGAAGGAAGTTTGC+TGG - tig0025935:66213-66232 Msa1426030:three_prime_UTR 40.0%
ACTTGCCAAACCAAGTAGAA+TGG + tig0025935:66294-66313 Msa1426030:intergenic 40.0%
GGCAAAAACCCATTACTAAC+CGG - tig0025935:66369-66388 Msa1426030:CDS 40.0%
! ACAGTTGCTTTCTTGTCCTT+CGG - tig0025935:66622-66641 Msa1426030:intron 40.0%
! GGTGTTTGGAATAGCTTATC+TGG - tig0025935:66715-66734 Msa1426030:intron 40.0%
CACATTTGTGTAAGTGTCTG+CGG - tig0025935:66755-66774 Msa1426030:intron 40.0%
! AAGTGACTTTTCTCCAATGG+TGG - tig0025935:67121-67140 Msa1426030:intron 40.0%
AAGTATCCCAATAAGTTCCC+TGG - tig0025935:67173-67192 Msa1426030:intron 40.0%
TATCAAGTCATTCTCCACCA+GGG + tig0025935:67193-67212 Msa1426030:intergenic 40.0%
CAATCAGGCAGAGAAAGATA+TGG + tig0025935:67252-67271 Msa1426030:intergenic 40.0%
ATTTCAGCTTTCTTAGCTGC+AGG + tig0025935:67402-67421 Msa1426030:intergenic 40.0%
TAACAGACAAACGTGGAACA+GGG + tig0025935:67494-67513 Msa1426030:intergenic 40.0%
TGTAACGTTAACAGCTGAGA+AGG - tig0025935:67639-67658 Msa1426030:CDS 40.0%
! CTGATCTAGCTGTTTCAGAT+GGG - tig0025935:67662-67681 Msa1426030:CDS 40.0%
AAGGACACATGACAAAGTCA+AGG + tig0025935:67862-67881 Msa1426030:intergenic 40.0%
TTGACTTTGTCATGTGTCCT+TGG - tig0025935:67861-67880 Msa1426030:intron 40.0%
TAAACAGGGATTGTCAGTGA+TGG - tig0025935:67936-67955 Msa1426030:CDS 40.0%
GAAAGGAGATAAAGGTAAGC+TGG - tig0025935:68014-68033 Msa1426030:intron 40.0%
GTAAGCTGGATGTATCAGAA+TGG - tig0025935:68028-68047 Msa1426030:intron 40.0%
AGAATGGCTGAGTAATGCTT+TGG - tig0025935:68044-68063 Msa1426030:intron 40.0%
GAATGGCTGAGTAATGCTTT+GGG - tig0025935:68045-68064 Msa1426030:intron 40.0%
AATGGCTGAGTAATGCTTTG+GGG - tig0025935:68046-68065 Msa1426030:intron 40.0%
AGATGTGGTAAAGGAAAAGG+AGG - tig0025935:68081-68100 Msa1426030:intron 40.0%
CCATTAAACACAATCCATGG+TGG + tig0025935:68428-68447 Msa1426030:intergenic 40.0%
! CCACCATGGATTGTGTTTAA+TGG - tig0025935:68425-68444 Msa1426030:intron 40.0%
CTGTACCCTGAAAAAAAGGA+TGG + tig0025935:68905-68924 Msa1426030:intergenic 40.0%
GCATCTGTACCCTGAAAAAA+AGG + tig0025935:68909-68928 Msa1426030:intergenic 40.0%
CCCCTTCTGAGTGATTTATA+CGG + tig0025935:69014-69033 Msa1426030:intergenic 40.0%
CCGTATAAATCACTCAGAAG+GGG - tig0025935:69011-69030 Msa1426030:intron 40.0%
CGTATAAATCACTCAGAAGG+GGG - tig0025935:69012-69031 Msa1426030:intron 40.0%
GTATAAATCACTCAGAAGGG+GGG - tig0025935:69013-69032 Msa1426030:intron 40.0%
CATTACAGAGTGTGCTTTGA+TGG - tig0025935:69117-69136 Msa1426030:CDS 40.0%
! CCTCTCGTGTGTTTGAGATA+TGG + tig0025935:66060-66079 Msa0889580:intergenic 45.0%
CCATATCTCAAACACACGAG+AGG - tig0025935:66057-66076 Msa1426030:three_prime_UTR 45.0%
!! AGAAGGAAGTTTGCTGGAAG+AGG - tig0025935:66219-66238 Msa1426030:three_prime_UTR 45.0%
!! TTGCTGGAAGAGGTTGGTAT+TGG - tig0025935:66229-66248 Msa1426030:three_prime_UTR 45.0%
AAGTTCCATCACTTGAGCCT+TGG - tig0025935:66310-66329 Msa1426030:three_prime_UTR 45.0%
TGGTTCAGCCGGTTAGTAAT+GGG + tig0025935:66380-66399 Msa1426030:intergenic 45.0%
! CAGTTGCTTTCTTGTCCTTC+GGG - tig0025935:66623-66642 Msa1426030:intron 45.0%
GGGTTATCAAGAACCACCAT+TGG + tig0025935:67137-67156 Msa1426030:intergenic 45.0%
TATCCCAATAAGTTCCCTGG+TGG - tig0025935:67176-67195 Msa1426030:intron 45.0%
TCTCCACCAGGGAACTTATT+GGG + tig0025935:67182-67201 Msa1426030:intergenic 45.0%
TTCTCCACCAGGGAACTTAT+TGG + tig0025935:67183-67202 Msa1426030:intergenic 45.0%
GTATCAAGTCATTCTCCACC+AGG + tig0025935:67194-67213 Msa1426030:intergenic 45.0%
TACCTGAAGTAGGGCAATCT+TGG + tig0025935:67430-67449 Msa1426030:intergenic 45.0%
AACAGACAAACGTGGAACAG+GGG + tig0025935:67493-67512 Msa1426030:intergenic 45.0%
GTAACAGACAAACGTGGAAC+AGG + tig0025935:67495-67514 Msa1426030:intergenic 45.0%
! GCTGATCTAGCTGTTTCAGA+TGG - tig0025935:67661-67680 Msa1426030:CDS 45.0%
AACAAAGCTGTAGTGTGTGC+TGG - tig0025935:67982-68001 Msa1426030:intron 45.0%
ACAAAGCTGTAGTGTGTGCT+GGG - tig0025935:67983-68002 Msa1426030:intron 45.0%
TTACCACATCTCCCTTTCAG+TGG + tig0025935:68072-68091 Msa1426030:intergenic 45.0%
CTGAAAGGGAGATGTGGTAA+AGG - tig0025935:68072-68091 Msa1426030:intron 45.0%
GGGAGATGTGGTAAAGGAAA+AGG - tig0025935:68078-68097 Msa1426030:intron 45.0%
AGGAAAAGGAGGTCTTGCAA+CGG - tig0025935:68092-68111 Msa1426030:intron 45.0%
! TGCTTTTGGCCAAAAGGCTT+CGG - tig0025935:68702-68721 Msa1426030:intron 45.0%
AGATGCCTCACACGTAAATG+AGG - tig0025935:68923-68942 Msa1426030:intron 45.0%
CATAGCCTCATTTACGTGTG+AGG + tig0025935:68931-68950 Msa1426030:intergenic 45.0%
CTCACACGTAAATGAGGCTA+TGG - tig0025935:68929-68948 Msa1426030:intron 45.0%
GCTGAGGAGGGAATTGCTAA+AGG - tig0025935:66100-66119 Msa1426030:three_prime_UTR 50.0%
GATGAAGCGGCTAAGCTAGA+AGG - tig0025935:66202-66221 Msa1426030:three_prime_UTR 50.0%
!! GGAAGTTTGCTGGAAGAGGT+TGG - tig0025935:66223-66242 Msa1426030:three_prime_UTR 50.0%
TCCATCACTTGAGCCTTGGA+AGG - tig0025935:66314-66333 Msa1426030:three_prime_UTR 50.0%
CATTAACTGCGAACCAAGCC+AGG + tig0025935:66340-66359 Msa1426030:intergenic 50.0%
CTGGTTCAGCCGGTTAGTAA+TGG + tig0025935:66381-66400 Msa1426030:intergenic 50.0%
GAGATCTCAAGTGGATCCCA+TGG - tig0025935:66938-66957 Msa1426030:intron 50.0%
GACCAAGATTGCCCTACTTC+AGG - tig0025935:67425-67444 Msa1426030:intron 50.0%
CAAAGCTGTAGTGTGTGCTG+GGG - tig0025935:67984-68003 Msa1426030:intron 50.0%
GTGCCGGAGAAAGGAGATAA+AGG - tig0025935:68006-68025 Msa1426030:intron 50.0%
!! AATGCTTTGGGGCCACTGAA+AGG - tig0025935:68057-68076 Msa1426030:intron 50.0%
!! ATGCTTTGGGGCCACTGAAA+GGG - tig0025935:68058-68077 Msa1426030:intron 50.0%
GGAAAAGGAGGTCTTGCAAC+GGG - tig0025935:68093-68112 Msa1426030:intron 50.0%
AGAATCTTCCAGCTCCACCA+TGG - tig0025935:68411-68430 Msa1426030:intron 50.0%
! AACACAATCCATGGTGGAGC+TGG + tig0025935:68422-68441 Msa1426030:intergenic 50.0%
! GCTGTATCTCCGAAGCCTTT+TGG + tig0025935:68714-68733 Msa1426030:intergenic 50.0%
AAATCACTCAGAAGGGGGGA+AGG - tig0025935:69017-69036 Msa1426030:intron 50.0%
! CAGAGTGTGCTTTGATGGCA+AGG - tig0025935:69122-69141 Msa1426030:CDS 50.0%
GCCTTCCAAGGCTCAAGTGA+TGG + tig0025935:66318-66337 Msa1426030:intergenic 55.0%
TACTAACCGGCTGAACCAGC+TGG - tig0025935:66382-66401 Msa1426030:CDS 55.0%
!! GTTTTGCCAGCTGGTTCAGC+CGG + tig0025935:66391-66410 Msa1426030:intergenic 55.0%
!!! TCGGTTGTCGTTTTGCCAGC+TGG + tig0025935:66400-66419 Msa1426030:intergenic 55.0%
TGTCCTTCGGGTCCCAAGAA+AGG - tig0025935:66635-66654 Msa1426030:intron 55.0%
GTCCTTCGGGTCCCAAGAAA+GGG - tig0025935:66636-66655 Msa1426030:intron 55.0%
TCCTTCGGGTCCCAAGAAAG+GGG - tig0025935:66637-66656 Msa1426030:intron 55.0%
CGATGTTGCAGCAGTTCGTG+AGG - tig0025935:67720-67739 Msa1426030:CDS 55.0%
CACTTGAGCCTTGGAAGGCC+TGG - tig0025935:66319-66338 Msa1426030:three_prime_UTR 60.0%
GAACCAAGCCAGGCCTTCCA+AGG + tig0025935:66330-66349 Msa1426030:intergenic 60.0%
ACCCCTTTCTTGGGACCCGA+AGG + tig0025935:66641-66660 Msa1426030:intergenic 60.0%
TGTAGTGTGTGCTGGGGTGC+CGG - tig0025935:67990-68009 Msa1426030:intron 60.0%
GGGCCACTGAAAGGGAGATG+TGG - tig0025935:68066-68085 Msa1426030:intron 60.0%
AGGAGGTCTTGCAACGGGAC+AGG - tig0025935:68098-68117 Msa1426030:intron 60.0%
GAGCCTTGGAAGGCCTGGCT+TGG - tig0025935:66324-66343 Msa1426030:three_prime_UTR 65.0%
!! TGTGCTGGGGTGCCGGAGAA+AGG - tig0025935:67997-68016 Msa1426030:intron 65.0%
Chromosome Type Strat End Strand Name
tig0025935 gene 66052 69299 66052 ID=Msa1426030;Name=Msa1426030
tig0025935 mRNA 66052 69299 66052 ID=Msa1426030-mRNA-1;Parent=Msa1426030;Name=Msa1426030-mRNA-1;_AED=0.34;_eAED=0.34;_QI=117|1|1|1|1|1|5|310|197
tig0025935 exon 66052 66433 66052 ID=Msa1426030-mRNA-1:exon:4646;Parent=Msa1426030-mRNA-1
tig0025935 exon 67232 67408 67232 ID=Msa1426030-mRNA-1:exon:4645;Parent=Msa1426030-mRNA-1
tig0025935 exon 67583 67765 67583 ID=Msa1426030-mRNA-1:exon:4644;Parent=Msa1426030-mRNA-1
tig0025935 exon 67905 67994 67905 ID=Msa1426030-mRNA-1:exon:4643;Parent=Msa1426030-mRNA-1
tig0025935 exon 69111 69299 69111 ID=Msa1426030-mRNA-1:exon:4642;Parent=Msa1426030-mRNA-1
tig0025935 five_prime_UTR 69183 69299 69183 ID=Msa1426030-mRNA-1:five_prime_utr;Parent=Msa1426030-mRNA-1
tig0025935 CDS 69111 69182 69111 ID=Msa1426030-mRNA-1:cds;Parent=Msa1426030-mRNA-1
tig0025935 CDS 67905 67994 67905 ID=Msa1426030-mRNA-1:cds;Parent=Msa1426030-mRNA-1
tig0025935 CDS 67583 67765 67583 ID=Msa1426030-mRNA-1:cds;Parent=Msa1426030-mRNA-1
tig0025935 CDS 67232 67408 67232 ID=Msa1426030-mRNA-1:cds;Parent=Msa1426030-mRNA-1
tig0025935 CDS 66362 66433 66362 ID=Msa1426030-mRNA-1:cds;Parent=Msa1426030-mRNA-1
tig0025935 three_prime_UTR 66052 66361 66052 ID=Msa1426030-mRNA-1:three_prime_utr;Parent=Msa1426030-mRNA-1
Gene Sequence

>Msa1426030

ATGAAAATGGCAGATGACTTTGAGAAGCAAGTAGATGAAGCGGCTAAGCTAGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATCTTTGAAAAGCAATGTGGAAACATTATCAATTCCTGCAGCTAAGAAAGCTGAAATTAAGACCAAGATTGCCCTACTTCAGGATCAAGTGAGAAAAGCGCAAAAGCGTGTTGCTGAAGAAAACAAACGTAAAGCTGTAACGTTAACAGCTGAGAAGGCTGATCTAGCTGTTTCAGATGGGAAATCTTACTGCATATCTCACGTTAATGTTGGGCTCGATGTTGCAGCAGTTCGTGAGGCTGTTACAAAAGTCATTGATCAGAAGGGATTGTCAGTGATGGTTTTTAGCACTGATGAATCTACAAACAAAGCTGTAGTGTGTGCTGGGGTGCCGGAGAAAGGAGATAAAGGTAAGCTGGATGTATCAGAATGGCTGAGTAATGCTTTGGGGCCACTGAAAGGGAGATGTGGTAAAGGAAAAGGAGGTCTTGCAACGGGACAGGGTACAGATGCCTCACACGTAAATGAGGCTATGGATCTTGCAGTGAAATTTGCATCCGTGAAATTGAACTAG

Protein sequence

>Msa1426030

MKMADDFEKQVDEAAKLEGSLLEEKVSSLKSNVETLSIPAAKKAEIKTKIALLQDQVRKAQKRVAEENKRKAVTLTAEKADLAVSDGKSYCISHVNVGLDVAAVREAVTKVIDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKGKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASHVNEAMDLAVKFASVKLN*