AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509390 MtrunA17_Chr3g0114281 95.541 157 5 1 1 157 1 155 4.84e-108 304
Msa0509390 MtrunA17_Chr0c32g0494171 62.921 89 33 0 68 156 12 100 1.24e-38 127
Msa0509390 MtrunA17_Chr7g0243961 62.921 89 33 0 68 156 12 100 1.24e-38 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509390 AT5G05360.1 44.910 167 75 6 1 154 1 163 1.31e-42 139
Msa0509390 AT5G05360.2 44.156 154 69 6 1 141 1 150 9.26e-37 124
Msa0509390 AT2G38450.1 60.494 81 32 0 69 149 55 135 7.23e-32 111
Msa0509390 AT2G38450.2 59.184 49 20 0 69 117 55 103 9.65e-16 69.7

Find 53 sgRNAs with CRISPR-Local

Find 617 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCGGTCTTGTTGTTTCT+TGG 0.311175 3_4:+57830299 None:intergenic
GATACGGGTTGGGTTTGTTT+TGG 0.339121 3_4:+57830357 None:intergenic
TCCACAGGCTCCACCTTCTT+CGG 0.351408 3_4:+57830255 None:intergenic
CAAATGTATTGCTCTGGATA+TGG 0.370151 3_4:-57830123 Msa0509390:CDS
CTTTCCAGTCAAGTTCTTGT+TGG 0.400775 3_4:-57830147 Msa0509390:CDS
TTGCAGTTGCAGCGATGAAC+TGG 0.405296 3_4:+57830328 None:intergenic
AAACTCGAATTGCTCTTTCC+AGG 0.409919 3_4:-57830233 Msa0509390:CDS
CAAGAAGTCGAAATTCAGTT+TGG 0.410256 3_4:-57823545 Msa0509390:CDS
GTGGTTTCACGATACGCTTA+AGG 0.417498 3_4:-57830187 Msa0509390:CDS
CTGGTTCAATGATACGGGTT+GGG 0.430102 3_4:+57830347 None:intergenic
CTATAAATTGTTACAATTCG+AGG 0.431909 3_4:+57830548 None:intergenic
ATGAAATGAGAAGATGAAAC+TGG 0.437956 3_4:+57830480 None:intergenic
ACAAGACCGCACTGTTGTTA+AGG 0.443164 3_4:-57830289 Msa0509390:CDS
TTGACCAACAAGAACTTGAC+TGG 0.477469 3_4:+57830143 None:intergenic
TGATTCGGATTCAAGTGAAA+TGG 0.478803 3_4:-57823404 Msa0509390:CDS
GTTGGTCAAATGTATTGCTC+TGG 0.481330 3_4:-57830129 Msa0509390:CDS
GTATCCTTAACTCTCTTCAT+CGG 0.497537 3_4:-57821230 Msa0509390:three_prime_UTR
GGTGGAATCGCCACCGAAGA+AGG 0.500729 3_4:-57830268 Msa0509390:CDS
TACTTAGTTTGTAAGTATGA+AGG 0.501423 3_4:-57823368 Msa0509390:intron
AGGTTATAGAGCAAGTGATT+CGG 0.501656 3_4:-57823419 Msa0509390:CDS
AACTCGAATTGCTCTTTCCA+GGG 0.508867 3_4:-57830232 Msa0509390:CDS
TATCCTTAACTCTCTTCATC+GGG 0.513073 3_4:-57821229 Msa0509390:three_prime_UTR
GATGAACTGGTTCAATGATA+CGG 0.513998 3_4:+57830341 None:intergenic
CCGCCCGATGAAGAGAGTTA+AGG 0.516752 3_4:+57821226 None:intergenic
GCGGTCTTGTTGTTTCTTGG+TGG 0.525060 3_4:+57830302 None:intergenic
TTCTTGTCGCACAGAGTCAA+AGG 0.533961 3_4:+57830419 None:intergenic
AAACCACCGATGAGTGCAAT+CGG 0.543960 3_4:+57830203 None:intergenic
ATGAACTGGTTCAATGATAC+GGG 0.546395 3_4:+57830342 None:intergenic
AGTGCAATCGGCGACCACCC+TGG 0.552841 3_4:+57830215 None:intergenic
TGTTTCTAGAAATCCTCAAA+AGG 0.559783 3_4:-57830100 Msa0509390:intron
ACTGGTTCAATGATACGGGT+TGG 0.564172 3_4:+57830346 None:intergenic
ACAGATATTATCAAACATGT+AGG 0.570126 3_4:+57830519 None:intergenic
ACCGAAGAAGGTGGAGCCTG+TGG 0.570187 3_4:-57830256 Msa0509390:CDS
TGGTCGCCGATTGCACTCAT+CGG 0.571547 3_4:-57830209 Msa0509390:CDS
ACAGGCTCCACCTTCTTCGG+TGG 0.573283 3_4:+57830258 None:intergenic
AGCACAATGCAGCAAACTCA+TGG 0.574134 3_4:+57821145 None:intergenic
AGAGCAATTCGAGTTTCCAC+AGG 0.580147 3_4:+57830240 None:intergenic
TCACTGCCTTGTTAATGAAG+AGG 0.589496 3_4:-57821185 Msa0509390:three_prime_UTR
TGTAAGTAGCTGTGTTGCAA+TGG 0.591518 3_4:-57821030 Msa0509390:three_prime_UTR
TTCGGATTCAAGTGAAATGG+AGG 0.617025 3_4:-57823401 Msa0509390:CDS
CGCTTAAGGAGGCTAAACGC+GGG 0.618691 3_4:-57830173 Msa0509390:CDS
TCGCCGATTGCACTCATCGG+TGG 0.618704 3_4:-57830206 Msa0509390:CDS
CAATGCAGCAAACTCATGGA+AGG 0.621359 3_4:+57821149 None:intergenic
ACACTTCCTCTTCATTAACA+AGG 0.623259 3_4:+57821179 None:intergenic
GGAATCGCCACCGAAGAAGG+TGG 0.624182 3_4:-57830265 Msa0509390:CDS
TGTGTTTATAGGGACATGCA+TGG 0.630942 3_4:-57823581 Msa0509390:intron
AGACCGCACTGTTGTTAAGG+TGG 0.642343 3_4:-57830286 Msa0509390:CDS
CCTTAACTCTCTTCATCGGG+CGG 0.646767 3_4:-57821226 Msa0509390:three_prime_UTR
GTTTCACGATACGCTTAAGG+AGG 0.650532 3_4:-57830184 Msa0509390:CDS
ACGCTTAAGGAGGCTAAACG+CGG 0.666526 3_4:-57830174 Msa0509390:CDS
TCGAATTGCTCTTTCCAGGG+TGG 0.674129 3_4:-57830229 Msa0509390:CDS
GCTTAAGGAGGCTAAACGCG+GGG 0.727411 3_4:-57830172 Msa0509390:CDS
ATTCCACCTTAACAACAGTG+CGG 0.796242 3_4:+57830283 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATACATTTTGATATT+TGG - chr3_4:57824093-57824112 Msa0509390:intron 15.0%
!!! TCTAATACATTTTGATATTT+GGG - chr3_4:57824094-57824113 Msa0509390:intron 15.0%
!!! TTATTATATGCTCTAAATAA+TGG - chr3_4:57828592-57828611 Msa0509390:intron 15.0%
!! CATTATTAGAAATATAAATC+AGG + chr3_4:57830233-57830252 None:intergenic 15.0%
!!! TCATTTTATACACCTATATA+AGG - chr3_4:57822140-57822159 Msa0509390:intron 20.0%
!! TACAAGTTTCATTAATTCTT+TGG - chr3_4:57823473-57823492 Msa0509390:intron 20.0%
!! AACATCATAAAGAATAAGAA+TGG + chr3_4:57823670-57823689 None:intergenic 20.0%
!! GCAAATTGTAATTAAAATCA+GGG + chr3_4:57823701-57823720 None:intergenic 20.0%
!! AGCAAATTGTAATTAAAATC+AGG + chr3_4:57823702-57823721 None:intergenic 20.0%
!!! AATACTATTGTCAGTTTTAA+TGG - chr3_4:57823750-57823769 Msa0509390:intron 20.0%
!! TCAAAATGTATTAGATCAAA+CGG + chr3_4:57824089-57824108 None:intergenic 20.0%
!!! CTAATACATTTTGATATTTG+GGG - chr3_4:57824095-57824114 Msa0509390:intron 20.0%
!! ATGATTATAGTAGATATACT+TGG - chr3_4:57824171-57824190 Msa0509390:intron 20.0%
!!! TTCACTTTTTGTTTTCATTA+GGG + chr3_4:57824201-57824220 None:intergenic 20.0%
!!! TTTCACTTTTTGTTTTCATT+AGG + chr3_4:57824202-57824221 None:intergenic 20.0%
!! ATGTTATGCAATAGAAAATA+GGG + chr3_4:57824542-57824561 None:intergenic 20.0%
!!! TTACATCAACTTAAAGTTTT+TGG - chr3_4:57824572-57824591 Msa0509390:intron 20.0%
!! TAAAGGATATAATCAAATAG+AGG - chr3_4:57825342-57825361 Msa0509390:intron 20.0%
!! AAAGGATATAATCAAATAGA+GGG - chr3_4:57825343-57825362 Msa0509390:intron 20.0%
!! TGATAATCAATTCAAAATCA+AGG - chr3_4:57825780-57825799 Msa0509390:intron 20.0%
!! AATTCAAAATCAAGGATTTA+GGG - chr3_4:57825788-57825807 Msa0509390:intron 20.0%
!! AGTTAGAGAAAAATTACATA+AGG - chr3_4:57826518-57826537 Msa0509390:intron 20.0%
!! GTTAGAGAAAAATTACATAA+GGG - chr3_4:57826519-57826538 Msa0509390:intron 20.0%
!! CATATGAAAGAATTAAACTT+TGG + chr3_4:57826615-57826634 None:intergenic 20.0%
!!! TCATTTTATACACCTATATA+AGG - chr3_4:57822140-57822159 Msa0509390:intron 20.0%
!! TTGGATTAACAACTTAATTA+AGG + chr3_4:57827227-57827246 None:intergenic 20.0%
!! CTCAACAATTATAACAAAAA+GGG + chr3_4:57827390-57827409 None:intergenic 20.0%
!! ACTCAACAATTATAACAAAA+AGG + chr3_4:57827391-57827410 None:intergenic 20.0%
!! TTGTTATCTACTTTCAAATA+TGG - chr3_4:57827769-57827788 Msa0509390:intron 20.0%
!!! TTTTGTTGTAATTCAAATTC+TGG - chr3_4:57827824-57827843 Msa0509390:intron 20.0%
!! ATTGACGGTAAAATATTATA+CGG + chr3_4:57827851-57827870 None:intergenic 20.0%
!! AAACAAAATAAGAAACAATC+AGG + chr3_4:57828161-57828180 None:intergenic 20.0%
!!! TTCTTATTTTGTTTACATAC+AGG - chr3_4:57828167-57828186 Msa0509390:intron 20.0%
!! ATGAGCATAATAAATATACA+AGG + chr3_4:57828515-57828534 None:intergenic 20.0%
!!! AATTTGAAGCTTTAAGAAAA+AGG + chr3_4:57828562-57828581 None:intergenic 20.0%
!! TAGTATAATTCTCAATTCTT+TGG - chr3_4:57828666-57828685 Msa0509390:intron 20.0%
!!! AGTCTTATTAAACATTATCA+GGG + chr3_4:57829102-57829121 None:intergenic 20.0%
!!! AAGTCTTATTAAACATTATC+AGG + chr3_4:57829103-57829122 None:intergenic 20.0%
!! AATACCATCAAAATATGAAT+TGG - chr3_4:57829413-57829432 Msa0509390:intron 20.0%
!!! TTAACCAATTCATATTTTGA+TGG + chr3_4:57829420-57829439 None:intergenic 20.0%
!!! GCTTAAATACATTTAAGTTT+AGG - chr3_4:57829637-57829656 Msa0509390:intron 20.0%
!!! ATAGAAAAAATGGCATTTTT+AGG + chr3_4:57829853-57829872 None:intergenic 20.0%
!!! AAAATGCCATTTTTTCTATA+AGG - chr3_4:57829854-57829873 Msa0509390:intron 20.0%
!! CTAATTCCTTATAGAAAAAA+TGG + chr3_4:57829863-57829882 None:intergenic 20.0%
!!! CATTTTTTCTATAAGGAATT+AGG - chr3_4:57829861-57829880 Msa0509390:intron 20.0%
!!! AATGGTTTATTTTTATTCCA+GGG + chr3_4:57829887-57829906 None:intergenic 20.0%
!!! AAATGGTTTATTTTTATTCC+AGG + chr3_4:57829888-57829907 None:intergenic 20.0%
!! AACCATTTAGTATAACTAAA+TGG - chr3_4:57829900-57829919 Msa0509390:intron 20.0%
!! TTATCATTAATGATTGAACT+CGG + chr3_4:57829980-57829999 None:intergenic 20.0%
!! AAAAGAATGACGTATATTAT+TGG - chr3_4:57830001-57830020 Msa0509390:intron 20.0%
!!! TCTTTAAGGTTTTAATATAG+AGG - chr3_4:57830207-57830226 Msa0509390:CDS 20.0%
! CTATAAATTGTTACAATTCG+AGG + chr3_4:57821061-57821080 None:intergenic 25.0%
! ACAGATATTATCAAACATGT+AGG + chr3_4:57821090-57821109 None:intergenic 25.0%
!!! TCTTGTCTTGTTTATTTTCA+TGG - chr3_4:57821158-57821177 Msa0509390:three_prime_UTR 25.0%
!! GAAAAAAAAAAGACCTTTTG+AGG + chr3_4:57821522-57821541 None:intergenic 25.0%
! ACACTAATGTGAAATGATAT+AGG - chr3_4:57821586-57821605 Msa0509390:intron 25.0%
! CACTAATGTGAAATGATATA+GGG - chr3_4:57821587-57821606 Msa0509390:intron 25.0%
! TATAGGGTTTATTACTTGTT+AGG - chr3_4:57821603-57821622 Msa0509390:intron 25.0%
! TCATAACTCATAAGACATTT+GGG - chr3_4:57821652-57821671 Msa0509390:intron 25.0%
! AAGTTAGTTACAAGAAACTT+GGG + chr3_4:57822054-57822073 None:intergenic 25.0%
! TGAATTTCATCTTCTCAATA+TGG - chr3_4:57822233-57822252 Msa0509390:intron 25.0%
!! TTTGAATGAAAGCTTTAGTA+TGG - chr3_4:57822930-57822949 Msa0509390:intron 25.0%
! GAAATCTCAAATTCTGTTAA+TGG - chr3_4:57822954-57822973 Msa0509390:intron 25.0%
! TCTTTCATATTGTAAAACCA+TGG + chr3_4:57823010-57823029 None:intergenic 25.0%
!! ATTGATTCCAAGAAGTTTAA+AGG - chr3_4:57823078-57823097 Msa0509390:intron 25.0%
!!! TTTAAAGGCAACAACTTTTT+TGG - chr3_4:57823093-57823112 Msa0509390:intron 25.0%
! TTTGGTAAATCATCATTTCA+AGG - chr3_4:57823111-57823130 Msa0509390:intron 25.0%
! TTTCAAGGATCAAATTCTAA+AGG - chr3_4:57823126-57823145 Msa0509390:intron 25.0%
!! ATATTTGTTGCAATCTAAAG+TGG - chr3_4:57823550-57823569 Msa0509390:CDS 25.0%
! ATTAGTATGGCAATATATTC+AGG - chr3_4:57823627-57823646 Msa0509390:intron 25.0%
! AAAACTGACAATAGTATTCA+GGG + chr3_4:57823748-57823767 None:intergenic 25.0%
! TAAAACTGACAATAGTATTC+AGG + chr3_4:57823749-57823768 None:intergenic 25.0%
!! TCATTCTAGAAAATGAAAGA+TGG + chr3_4:57823947-57823966 None:intergenic 25.0%
! TAGAATCAACATGAACAAAA+GGG + chr3_4:57823989-57824008 None:intergenic 25.0%
! TTAGAATCAACATGAACAAA+AGG + chr3_4:57823990-57824009 None:intergenic 25.0%
!!! TTTTGTTCATGTTGATTCTA+AGG - chr3_4:57823989-57824008 Msa0509390:intron 25.0%
!! GTTTTCTATGCTTAGAAAAA+TGG + chr3_4:57824031-57824050 None:intergenic 25.0%
!!! AAGCTTTATTACAACTGATA+GGG + chr3_4:57824061-57824080 None:intergenic 25.0%
! TAAACATGATTATGAACAGA+AGG + chr3_4:57824134-57824153 None:intergenic 25.0%
!! GTTGAAATGATTTTCAATGA+GGG + chr3_4:57824252-57824271 None:intergenic 25.0%
!! AGTTGAAATGATTTTCAATG+AGG + chr3_4:57824253-57824272 None:intergenic 25.0%
! ATGCTCTAGTAATGTTTAAA+AGG + chr3_4:57824415-57824434 None:intergenic 25.0%
!! CACATTTACCTAAACAATTT+TGG - chr3_4:57824447-57824466 Msa0509390:intron 25.0%
!!! GTGATTGATTTTGTAAAATG+GGG + chr3_4:57824520-57824539 None:intergenic 25.0%
!!! GGTGATTGATTTTGTAAAAT+GGG + chr3_4:57824521-57824540 None:intergenic 25.0%
! CATGTTATGCAATAGAAAAT+AGG + chr3_4:57824543-57824562 None:intergenic 25.0%
!!! ACTTTAAGTTGATGTAAATC+AGG + chr3_4:57824569-57824588 None:intergenic 25.0%
! ACAAAATCTTTCAAATAAGC+TGG + chr3_4:57824989-57825008 None:intergenic 25.0%
! ATGAGAAAAAGAATGAAAAG+AGG + chr3_4:57825071-57825090 None:intergenic 25.0%
! AAAAGCAATGAATGTTGAAT+TGG - chr3_4:57825183-57825202 Msa0509390:intron 25.0%
! CTATTGCATCTATTCAAAAT+TGG - chr3_4:57825428-57825447 Msa0509390:intron 25.0%
! CAATTCAAAATCAAGGATTT+AGG - chr3_4:57825787-57825806 Msa0509390:intron 25.0%
!! AGGGATTCTTAAATACTTTT+TGG - chr3_4:57825807-57825826 Msa0509390:intron 25.0%
!!! GGGATTCTTAAATACTTTTT+GGG - chr3_4:57825808-57825827 Msa0509390:intron 25.0%
!!! TAAATACTTTTTGGGATTAG+AGG - chr3_4:57825816-57825835 Msa0509390:intron 25.0%
!! AAAGTCAGAAGTACAAATAT+TGG - chr3_4:57826176-57826195 Msa0509390:intron 25.0%
!! AAGTCAGAAGTACAAATATT+GGG - chr3_4:57826177-57826196 Msa0509390:intron 25.0%
! ATGAAAGAATTAAACTTTGG+AGG + chr3_4:57826612-57826631 None:intergenic 25.0%
!! CATCTTCTCAATAGATTTTA+TGG - chr3_4:57827089-57827108 Msa0509390:intron 25.0%
!!! TACTTTTGTTATGTCATGTT+TGG + chr3_4:57827246-57827265 None:intergenic 25.0%
! CAATATTGGAATCAAATTGT+CGG + chr3_4:57827278-57827297 None:intergenic 25.0%
! AGTGAAGAATAACACAATAT+TGG + chr3_4:57827292-57827311 None:intergenic 25.0%
! ACAAGGCATATATAATACTA+CGG + chr3_4:57827560-57827579 None:intergenic 25.0%
! ATTAGTACTTGAGTGAATTA+GGG + chr3_4:57827594-57827613 None:intergenic 25.0%
! TATTAGTACTTGAGTGAATT+AGG + chr3_4:57827595-57827614 None:intergenic 25.0%
! TTCACTCAAGTACTAATATA+TGG - chr3_4:57827597-57827616 Msa0509390:intron 25.0%
! AGTACTAATATATGGAACTA+TGG - chr3_4:57827605-57827624 Msa0509390:intron 25.0%
! TGTTACAAACTGTGTTTATA+GGG - chr3_4:57828015-57828034 Msa0509390:intron 25.0%
!!! TACTTAGTTTGTAAGTATGA+AGG - chr3_4:57828238-57828257 Msa0509390:intron 25.0%
!! TTGCTTGTTCTTATTTACTT+CGG - chr3_4:57828355-57828374 Msa0509390:intron 25.0%
! GAACAGCTAAATTTAAAGAA+TGG + chr3_4:57828437-57828456 None:intergenic 25.0%
!! TTTTCGATTATTATACGACA+AGG + chr3_4:57828479-57828498 None:intergenic 25.0%
!! ATTATACTAGATGAAAGCAT+CGG + chr3_4:57828655-57828674 None:intergenic 25.0%
! AAACCAAATACAACCAAAAT+AGG + chr3_4:57828877-57828896 None:intergenic 25.0%
!! GTATGATCATAAGCTTTAAT+CGG - chr3_4:57828965-57828984 Msa0509390:intron 25.0%
!!! ATTTGGATTGTTTTATGTCT+AGG - chr3_4:57829043-57829062 Msa0509390:intron 25.0%
!!! TCATATTTTGATGGTATTTC+TGG + chr3_4:57829411-57829430 None:intergenic 25.0%
! CTAAGTAATAGCATGAAAAA+AGG + chr3_4:57829774-57829793 None:intergenic 25.0%
!! TTAAAACCTTAAAGAGTACA+TGG + chr3_4:57830202-57830221 None:intergenic 25.0%
ATGAAATGAGAAGATGAAAC+TGG + chr3_4:57821129-57821148 None:intergenic 30.0%
!! TGTTTCTAGAAATCCTCAAA+AGG - chr3_4:57821506-57821525 Msa0509390:intron 30.0%
GTCATAACTCATAAGACATT+TGG - chr3_4:57821651-57821670 Msa0509390:intron 30.0%
! ATAAGACATTTGGGATTGTT+TGG - chr3_4:57821661-57821680 Msa0509390:intron 30.0%
! TAAGACATTTGGGATTGTTT+GGG - chr3_4:57821662-57821681 Msa0509390:intron 30.0%
!!! CGTTTTCAGCTTATTTTAGT+AGG - chr3_4:57821725-57821744 Msa0509390:intron 30.0%
CAAGTTAGTTACAAGAAACT+TGG + chr3_4:57822055-57822074 None:intergenic 30.0%
! TAAGGACTTGAATGATTTGT+GGG + chr3_4:57822379-57822398 None:intergenic 30.0%
ATAAGGACTTGAATGATTTG+TGG + chr3_4:57822380-57822399 None:intergenic 30.0%
ACGGATCAAATTATCATTCT+TGG - chr3_4:57822452-57822471 Msa0509390:intron 30.0%
CGGATCAAATTATCATTCTT+GGG - chr3_4:57822453-57822472 Msa0509390:intron 30.0%
ATGAAGTTTGAATTCGTTGA+TGG - chr3_4:57822508-57822527 Msa0509390:intron 30.0%
TCATTCTTGGATTGTGAATT+CGG - chr3_4:57822600-57822619 Msa0509390:intron 30.0%
! TGCATTTTCCATAAACACAA+TGG + chr3_4:57822647-57822666 None:intergenic 30.0%
!!! TGTTTTGGAATCTTGTTGTA+AGG + chr3_4:57822752-57822771 None:intergenic 30.0%
ACTCTGAATTGAAGATTCTT+TGG - chr3_4:57822785-57822804 Msa0509390:intron 30.0%
CTCTGAATTGAAGATTCTTT+GGG - chr3_4:57822786-57822805 Msa0509390:intron 30.0%
GAGAAAATCTTGTTCATAGA+GGG + chr3_4:57822988-57823007 None:intergenic 30.0%
! TATGAACAAGATTTTCTCCA+TGG - chr3_4:57822990-57823009 Msa0509390:intron 30.0%
!! TTGAATTGTTTCTGAAGATG+TGG + chr3_4:57823228-57823247 None:intergenic 30.0%
TCATCTCTTAATCAAAGTTC+AGG - chr3_4:57823384-57823403 Msa0509390:CDS 30.0%
TTAATTTCACTCAAAACTCC+TGG - chr3_4:57823502-57823521 Msa0509390:intron 30.0%
! ATTCAGGGAACTATTCATTT+TGG + chr3_4:57823733-57823752 None:intergenic 30.0%
! TGGTTTTCAATGTTTGATTC+AGG - chr3_4:57823770-57823789 Msa0509390:intron 30.0%
CTTGAATCTGGATAATAAGT+TGG - chr3_4:57823848-57823867 Msa0509390:intron 30.0%
TATTACAACTGATAGGGAAA+GGG + chr3_4:57824055-57824074 None:intergenic 30.0%
TTATTACAACTGATAGGGAA+AGG + chr3_4:57824056-57824075 None:intergenic 30.0%
!! GAAGCTTTATTACAACTGAT+AGG + chr3_4:57824062-57824081 None:intergenic 30.0%
TGAACAGAAGGAACATAAAT+GGG + chr3_4:57824122-57824141 None:intergenic 30.0%
ATGAACAGAAGGAACATAAA+TGG + chr3_4:57824123-57824142 None:intergenic 30.0%
AAAACTGTCAGAAGTGATAA+TGG - chr3_4:57824281-57824300 Msa0509390:intron 30.0%
CTTTGGATGCATAAAATGAA+GGG + chr3_4:57824322-57824341 None:intergenic 30.0%
!! AGTTTGGTGTAAAATTCCTT+TGG + chr3_4:57824339-57824358 None:intergenic 30.0%
!! GGGTGATTGATTTTGTAAAA+TGG + chr3_4:57824522-57824541 None:intergenic 30.0%
GAAAAAGAAATGTCAGAAAC+AGG + chr3_4:57824824-57824843 None:intergenic 30.0%
AGAGAGAATTCAATGGATAA+AGG + chr3_4:57824878-57824897 None:intergenic 30.0%
! CATGCTTCTTTATAGGTTTT+AGG + chr3_4:57825145-57825164 None:intergenic 30.0%
TGAAAGATACAAAGCAAGAT+TGG - chr3_4:57825315-57825334 Msa0509390:intron 30.0%
AAATTGAAGAAAAGCCTCTA+TGG - chr3_4:57825559-57825578 Msa0509390:intron 30.0%
TACAAGACCTGATATTTCAT+TGG - chr3_4:57826038-57826057 Msa0509390:intron 30.0%
! AGTCAGAAGTACAAATATTG+GGG - chr3_4:57826178-57826197 Msa0509390:intron 30.0%
TGACTATCACAATAAAGAAC+TGG + chr3_4:57826426-57826445 None:intergenic 30.0%
! AAAGAATTAAACTTTGGAGG+TGG + chr3_4:57826609-57826628 None:intergenic 30.0%
TAATTCTTTCATATGCAAGC+TGG - chr3_4:57826620-57826639 Msa0509390:intron 30.0%
AATTCTTTCATATGCAAGCT+GGG - chr3_4:57826621-57826640 Msa0509390:intron 30.0%
! AAGTCTTATCTCACTAAGTT+GGG + chr3_4:57827138-57827157 None:intergenic 30.0%
ATAACACAAATCGCAAACAA+TGG + chr3_4:57827697-57827716 None:intergenic 30.0%
! TTTTACCGTCAATTGCATTT+TGG - chr3_4:57827858-57827877 Msa0509390:intron 30.0%
! TTTACCGTCAATTGCATTTT+GGG - chr3_4:57827859-57827878 Msa0509390:intron 30.0%
AACCAATAAGTTTATGAGCA+GGG + chr3_4:57827975-57827994 None:intergenic 30.0%
GTGTTACAAACTGTGTTTAT+AGG - chr3_4:57828014-57828033 Msa0509390:intron 30.0%
GTTTGTAAGTATGAAGGTAA+TGG - chr3_4:57828244-57828263 Msa0509390:intron 30.0%
AATTAAGTAGAACAATTGCC+CGG + chr3_4:57828409-57828428 None:intergenic 30.0%
ATACTAACCAGTAGTATGAT+TGG - chr3_4:57828771-57828790 Msa0509390:intron 30.0%
ACGCTTAAATATCATCTTGT+TGG + chr3_4:57829158-57829177 None:intergenic 30.0%
ATTTAAGCGTATTTGCCTTA+TGG - chr3_4:57829168-57829187 Msa0509390:intron 30.0%
TTTAAGCGTATTTGCCTTAT+GGG - chr3_4:57829169-57829188 Msa0509390:intron 30.0%
TCGATTGAACAAAATGATGT+TGG - chr3_4:57829219-57829238 Msa0509390:intron 30.0%
TAGACAACGACATATTAACA+AGG + chr3_4:57829259-57829278 None:intergenic 30.0%
TGTTAATATGTCGTTGTCTA+AGG - chr3_4:57829259-57829278 Msa0509390:intron 30.0%
TTGCTTCAAACATACATGTT+TGG - chr3_4:57829472-57829491 Msa0509390:intron 30.0%
ATAAGAATCTAGTGAAGTCT+AGG - chr3_4:57829715-57829734 Msa0509390:intron 30.0%
ATAGCATGAAAAAAGGCAAT+AGG + chr3_4:57829767-57829786 None:intergenic 30.0%
TTCATGCTATTACTTAGCTT+TGG - chr3_4:57829777-57829796 Msa0509390:intron 30.0%
! TCATGCTATTACTTAGCTTT+GGG - chr3_4:57829778-57829797 Msa0509390:intron 30.0%
CGCCATTTAGTTATACTAAA+TGG + chr3_4:57829905-57829924 None:intergenic 30.0%
CTAAATGGCGTATATAAATG+TGG - chr3_4:57829915-57829934 Msa0509390:intron 30.0%
! AAATGCTCTACTTTGAAGAT+TGG - chr3_4:57830039-57830058 Msa0509390:intron 30.0%
! GCTTTTATCTCTCATAAAAC+AGG - chr3_4:57830105-57830124 Msa0509390:CDS 30.0%
CACTTTGTAAGTAAATCCTT+TGG - chr3_4:57830129-57830148 Msa0509390:CDS 30.0%
! ATGAACTGGTTCAATGATAC+GGG + chr3_4:57821267-57821286 None:intergenic 35.0%
! GATGAACTGGTTCAATGATA+CGG + chr3_4:57821268-57821287 None:intergenic 35.0%
! CAAATGTATTGCTCTGGATA+TGG - chr3_4:57821483-57821502 Msa0509390:intron 35.0%
!!! CTTATTTTAGTAGGCTCACT+AGG - chr3_4:57821734-57821753 Msa0509390:intron 35.0%
! CTGATACAACAGCCTTATAT+AGG + chr3_4:57822155-57822174 None:intergenic 35.0%
AGAAACGTGTTTAGATCTGA+AGG + chr3_4:57822269-57822288 None:intergenic 35.0%
TGAAAAGCTTGAAAAGCTTG+CGG + chr3_4:57822293-57822312 None:intergenic 35.0%
!! CTTTTCAAGCTCTTCATCAA+TGG - chr3_4:57822306-57822325 Msa0509390:intron 35.0%
TCGCTTGGATGAACAAAATA+AGG + chr3_4:57822397-57822416 None:intergenic 35.0%
! TATTTTGTTCATCCAAGCGA+TGG - chr3_4:57822397-57822416 Msa0509390:intron 35.0%
! TTCTTCAGTTTCTGTTTCTC+CGG - chr3_4:57822423-57822442 Msa0509390:intron 35.0%
TAATTTGATCCGTCAAGAAC+CGG + chr3_4:57822445-57822464 None:intergenic 35.0%
GGATCGAATTCATCAAGAAT+TGG + chr3_4:57822544-57822563 None:intergenic 35.0%
!! ACAATGGATTGAGCAATTGA+AGG + chr3_4:57822631-57822650 None:intergenic 35.0%
TGCTCAATCCATTGTGTTTA+TGG - chr3_4:57822636-57822655 Msa0509390:intron 35.0%
TGGAAAATGCATGTGATGTT+TGG - chr3_4:57822656-57822675 Msa0509390:intron 35.0%
GGAAAATGCATGTGATGTTT+GGG - chr3_4:57822657-57822676 Msa0509390:intron 35.0%
! GTAGAAAGTGGTAACTGTTT+TGG + chr3_4:57822767-57822786 None:intergenic 35.0%
CTTCAATTCAGAGTAGAAAG+TGG + chr3_4:57822779-57822798 None:intergenic 35.0%
! GAAGATTCTTTGGGAAGAAT+TGG - chr3_4:57822795-57822814 Msa0509390:intron 35.0%
! TACGCTATTCGTTTTCTTAC+TGG - chr3_4:57822907-57822926 Msa0509390:intron 35.0%
GGAGAAAATCTTGTTCATAG+AGG + chr3_4:57822989-57823008 None:intergenic 35.0%
AAAACAGAGTCATCAACAGT+AGG + chr3_4:57823048-57823067 None:intergenic 35.0%
GTTGTTGCCTTTAAACTTCT+TGG + chr3_4:57823088-57823107 None:intergenic 35.0%
CTTCTTCCAACATGTTTCAA+CGG + chr3_4:57823193-57823212 None:intergenic 35.0%
!! AATTGTTTCTGAAGATGTGG+TGG + chr3_4:57823225-57823244 None:intergenic 35.0%
TTACACATGAGCAGTATGAA+AGG - chr3_4:57823340-57823359 Msa0509390:intron 35.0%
AGGTTAATGACTCTTCTTCA+AGG - chr3_4:57823360-57823379 Msa0509390:intron 35.0%
AGACATAGAAGTAACCTGAT+TGG + chr3_4:57823424-57823443 None:intergenic 35.0%
GTAGGTAACTTTATGGACAT+GGG + chr3_4:57823600-57823619 None:intergenic 35.0%
TGTAGGTAACTTTATGGACA+TGG + chr3_4:57823601-57823620 None:intergenic 35.0%
ATGTCCATAAAGTTACCTAC+AGG - chr3_4:57823600-57823619 Msa0509390:intron 35.0%
ATGACCTGTAGGTAACTTTA+TGG + chr3_4:57823607-57823626 None:intergenic 35.0%
ACCTACAGGTCATATTAGTA+TGG - chr3_4:57823614-57823633 Msa0509390:intron 35.0%
AAGAAAACCATGAGGATGAT+TGG - chr3_4:57823795-57823814 Msa0509390:intron 35.0%
TATCCAGATTCAAGTAGTAC+AGG + chr3_4:57823842-57823861 None:intergenic 35.0%
GAACAGAAGGAACATAAATG+GGG + chr3_4:57824121-57824140 None:intergenic 35.0%
AAAAGCAATGACATGTTGTC+TGG + chr3_4:57824225-57824244 None:intergenic 35.0%
AATGAAGGGATGTTGAATTC+AGG + chr3_4:57824308-57824327 None:intergenic 35.0%
CCTTTGGATGCATAAAATGA+AGG + chr3_4:57824323-57824342 None:intergenic 35.0%
! CCTTCATTTTATGCATCCAA+AGG - chr3_4:57824320-57824339 Msa0509390:intron 35.0%
GTGTTTCAACACAACTAGTT+TGG + chr3_4:57824355-57824374 None:intergenic 35.0%
GCATAGGACCAAAATTGTTT+AGG + chr3_4:57824458-57824477 None:intergenic 35.0%
! TGATTTTGTAAAATGGGGCT+AGG + chr3_4:57824515-57824534 None:intergenic 35.0%
TCTTTGAGCTTGTAAAGTAG+AGG + chr3_4:57824612-57824631 None:intergenic 35.0%
ATCTTTCTTGGCTACAAAAG+TGG - chr3_4:57824662-57824681 Msa0509390:intron 35.0%
AGGTTGTATGTTGGTATGAT+AGG + chr3_4:57824804-57824823 None:intergenic 35.0%
! AAAGGTGAAGTATCAGAAAC+AGG + chr3_4:57824860-57824879 None:intergenic 35.0%
AAAGAATGAAAAGAGGAGAG+TGG + chr3_4:57825064-57825083 None:intergenic 35.0%
AGACTGACATGCTTCTTTAT+AGG + chr3_4:57825152-57825171 None:intergenic 35.0%
AGCAATGAATGTTGAATTGG+AGG - chr3_4:57825186-57825205 Msa0509390:intron 35.0%
! TGAAACCTGTTGGTTGTAAA+TGG - chr3_4:57825257-57825276 Msa0509390:intron 35.0%
! GAAACCTGTTGGTTGTAAAT+GGG - chr3_4:57825258-57825277 Msa0509390:intron 35.0%
TTTCAATAGAACCATCAGCT+TGG + chr3_4:57825300-57825319 None:intergenic 35.0%
AAGATACAAAGCAAGATTGG+TGG - chr3_4:57825318-57825337 Msa0509390:intron 35.0%
! ACAGTAGTTAATTTGGCTAC+TGG + chr3_4:57825394-57825413 None:intergenic 35.0%
TAGCCAAATTAACTACTGTG+AGG - chr3_4:57825395-57825414 Msa0509390:intron 35.0%
AGTCCTCACAGTAGTTAATT+TGG + chr3_4:57825401-57825420 None:intergenic 35.0%
! GTGAACAATGCTTTTCTTCA+CGG - chr3_4:57825469-57825488 Msa0509390:intron 35.0%
! TGAACAATGCTTTTCTTCAC+GGG - chr3_4:57825470-57825489 Msa0509390:intron 35.0%
GTTTACATGACAATTCCAGA+AGG - chr3_4:57825508-57825527 Msa0509390:intron 35.0%
TGAAGCAAGCTAGTAGAAAA+TGG - chr3_4:57825584-57825603 Msa0509390:intron 35.0%
!! ACTACATTGCTTTTAGCTGA+AGG - chr3_4:57825619-57825638 Msa0509390:intron 35.0%
! TCTTTGTTTACCCTTCAACA+TGG - chr3_4:57825667-57825686 Msa0509390:intron 35.0%
GAAATCACTACCATGTTGAA+GGG + chr3_4:57825680-57825699 None:intergenic 35.0%
TGAAATCACTACCATGTTGA+AGG + chr3_4:57825681-57825700 None:intergenic 35.0%
TGAAATAGAGATTCCTTCCT+TGG + chr3_4:57825851-57825870 None:intergenic 35.0%
!! CTTGATTTGCTTGATTCATC+AGG - chr3_4:57825886-57825905 Msa0509390:intron 35.0%
! CTTGATTCATCAGGTCTTTT+AGG - chr3_4:57825895-57825914 Msa0509390:intron 35.0%
AATTTGACTGACGTGTCTAA+AGG + chr3_4:57825940-57825959 None:intergenic 35.0%
TAGCAAGACACATCTGTAAA+AGG + chr3_4:57825982-57826001 None:intergenic 35.0%
! AAATTGACTCAGTTGTTGAG+TGG + chr3_4:57826064-57826083 None:intergenic 35.0%
GCTTTATAATGAGTAGTGGT+AGG + chr3_4:57826096-57826115 None:intergenic 35.0%
!!! TACTGGCTTCTGTTTCTTTT+TGG - chr3_4:57826248-57826267 Msa0509390:intron 35.0%
!! ACTGGCTTCTGTTTCTTTTT+GGG - chr3_4:57826249-57826268 Msa0509390:intron 35.0%
TTCTTCACTCATATCTTGGA+AGG - chr3_4:57826272-57826291 Msa0509390:intron 35.0%
CTCTTCAGAAGCTGAATATA+GGG - chr3_4:57826323-57826342 Msa0509390:intron 35.0%
! ATGGATACTGTACTTGTTGA+AGG - chr3_4:57826374-57826393 Msa0509390:intron 35.0%
TTTGTTCTCTCATGAAAGAC+TGG + chr3_4:57826474-57826493 None:intergenic 35.0%
! CTGATACAACAGCCTTATAT+AGG + chr3_4:57822155-57822174 None:intergenic 35.0%
! CAAGTCTTATCTCACTAAGT+TGG + chr3_4:57827139-57827158 None:intergenic 35.0%
! TGTGTTATTCTTCACTGCTT+TGG - chr3_4:57827296-57827315 Msa0509390:intron 35.0%
TCATACACAGACACAAAAGA+AGG - chr3_4:57827416-57827435 Msa0509390:intron 35.0%
CATACACAGACACAAAAGAA+GGG - chr3_4:57827417-57827436 Msa0509390:intron 35.0%
TTAGGGTTTACAGTACTACA+AGG + chr3_4:57827577-57827596 None:intergenic 35.0%
AGAACCCAAAATGCAATTGA+CGG + chr3_4:57827866-57827885 None:intergenic 35.0%
TTCCCTGCTCATAAACTTAT+TGG - chr3_4:57827970-57827989 Msa0509390:intron 35.0%
GAACCAATAAGTTTATGAGC+AGG + chr3_4:57827976-57827995 None:intergenic 35.0%
ACACAGTTTGTAACACAGTA+TGG + chr3_4:57828010-57828029 None:intergenic 35.0%
CAAGAAGTCGAAATTCAGTT+TGG - chr3_4:57828061-57828080 Msa0509390:intron 35.0%
AGGTTATAGAGCAAGTGATT+CGG - chr3_4:57828187-57828206 Msa0509390:intron 35.0%
! TGATTCGGATTCAAGTGAAA+TGG - chr3_4:57828202-57828221 Msa0509390:intron 35.0%
CATAGTTGAATCTTGTTGAC+CGG - chr3_4:57828387-57828406 Msa0509390:intron 35.0%
ATAGTTGAATCTTGTTGACC+GGG - chr3_4:57828388-57828407 Msa0509390:intron 35.0%
GGGCAATTGTTCTACTTAAT+TGG - chr3_4:57828408-57828427 Msa0509390:intron 35.0%
TTAGCTGTTCATTTCCACAA+AGG - chr3_4:57828447-57828466 Msa0509390:intron 35.0%
AAACAAAACAACACTCGTCT+AGG + chr3_4:57828539-57828558 None:intergenic 35.0%
ATAATGGTTACCCTCTATCT+AGG - chr3_4:57828608-57828627 Msa0509390:intron 35.0%
CTAACATAGTCCTAGATAGA+GGG + chr3_4:57828621-57828640 None:intergenic 35.0%
ACTAACATAGTCCTAGATAG+AGG + chr3_4:57828622-57828641 None:intergenic 35.0%
! TCATACTACTGGTTAGTATC+AGG + chr3_4:57828770-57828789 None:intergenic 35.0%
CAGTAGTATGATTGGTATCT+GGG - chr3_4:57828779-57828798 Msa0509390:intron 35.0%
ATCTGGGTGTATTCAGTATT+AGG - chr3_4:57828795-57828814 Msa0509390:intron 35.0%
!!! GCACCTATTTTGGTTGTATT+TGG - chr3_4:57828871-57828890 Msa0509390:intron 35.0%
AAATGCTGCCTGATAATAAC+TGG - chr3_4:57828914-57828933 Msa0509390:intron 35.0%
AATGCTGCCTGATAATAACT+GGG - chr3_4:57828915-57828934 Msa0509390:intron 35.0%
CTATTGTAAGTCCTTAAGAG+AGG - chr3_4:57828996-57829015 Msa0509390:intron 35.0%
!! ACTGAGCGTTGGAATTTATT+TGG - chr3_4:57829026-57829045 Msa0509390:intron 35.0%
GTACGATCACAAAGTGTATT+TGG - chr3_4:57829073-57829092 Msa0509390:intron 35.0%
TTAAGCGTATTTGCCTTATG+GGG - chr3_4:57829170-57829189 Msa0509390:intron 35.0%
GAATTGGTTAATACCTGTGA+TGG - chr3_4:57829429-57829448 Msa0509390:intron 35.0%
ATACATGTTTGGAAATCCGT+TGG - chr3_4:57829483-57829502 Msa0509390:intron 35.0%
CATGTCTATCATACTGCAAT+TGG + chr3_4:57829512-57829531 None:intergenic 35.0%
AATGCTACGCTACATACATT+AGG - chr3_4:57829540-57829559 Msa0509390:intron 35.0%
GTTAACAGTTCTCTATGGTT+TGG + chr3_4:57829598-57829617 None:intergenic 35.0%
GCATAGTTAACAGTTCTCTA+TGG + chr3_4:57829603-57829622 None:intergenic 35.0%
TTGCTTGCTTCTATTAGACT+CGG - chr3_4:57829677-57829696 Msa0509390:intron 35.0%
ATGGCGTATATAAATGTGGA+TGG - chr3_4:57829919-57829938 Msa0509390:intron 35.0%
! TACTTTGAAGATTGGAGATC+TGG - chr3_4:57830047-57830066 Msa0509390:intron 35.0%
! ACTTTGAAGATTGGAGATCT+GGG - chr3_4:57830048-57830067 Msa0509390:intron 35.0%
CAACAACCATGTACTCTTTA+AGG - chr3_4:57830193-57830212 Msa0509390:CDS 35.0%
GTATCCTTAACTCTCTTCAT+CGG - chr3_4:57830376-57830395 Msa0509390:CDS 35.0%
TATCCTTAACTCTCTTCATC+GGG - chr3_4:57830377-57830396 Msa0509390:CDS 35.0%
ACACTTCCTCTTCATTAACA+AGG + chr3_4:57830430-57830449 None:intergenic 35.0%
!!! GTTGGGTTTGTTTTGGTCTA+TGG + chr3_4:57821245-57821264 None:intergenic 40.0%
ATTCCACCTTAACAACAGTG+CGG + chr3_4:57821326-57821345 None:intergenic 40.0%
AAACTCGAATTGCTCTTTCC+AGG - chr3_4:57821373-57821392 Msa0509390:intron 40.0%
AACTCGAATTGCTCTTTCCA+GGG - chr3_4:57821374-57821393 Msa0509390:intron 40.0%
CTTTCCAGTCAAGTTCTTGT+TGG - chr3_4:57821459-57821478 Msa0509390:intron 40.0%
TTGACCAACAAGAACTTGAC+TGG + chr3_4:57821466-57821485 None:intergenic 40.0%
GTTGGTCAAATGTATTGCTC+TGG - chr3_4:57821477-57821496 Msa0509390:intron 40.0%
AGTTATTGAACAGCAGCTTC+TGG + chr3_4:57821971-57821990 None:intergenic 40.0%
AGTTATAATCCTGTGCGAGA+TGG - chr3_4:57822093-57822112 Msa0509390:intron 40.0%
TGGTACTTCTTCTACTTTCG+AGG - chr3_4:57822348-57822367 Msa0509390:intron 40.0%
TACTTCTTCTACTTTCGAGG+AGG - chr3_4:57822351-57822370 Msa0509390:intron 40.0%
GGAGAAACAGAAACTGAAGA+AGG + chr3_4:57822424-57822443 None:intergenic 40.0%
GTAACATGCTCGTTCATTCT+TGG - chr3_4:57822587-57822606 Msa0509390:intron 40.0%
AAATGCATGTGATGTTTGGG+TGG - chr3_4:57822660-57822679 Msa0509390:intron 40.0%
! TGATGTTTGGGTGGATTTGA+AGG - chr3_4:57822669-57822688 Msa0509390:intron 40.0%
TTGAAGGAACGATTTGCACA+AGG - chr3_4:57822685-57822704 Msa0509390:intron 40.0%
CTACAAGTGCAGTTTGGTAT+AGG + chr3_4:57822832-57822851 None:intergenic 40.0%
ATCTTGTTCATAGAGGGAAG+AGG + chr3_4:57822982-57823001 None:intergenic 40.0%
GTGATTGCTCTTTCCACAAA+AGG + chr3_4:57823169-57823188 None:intergenic 40.0%
ATCACACCGTTGAAACATGT+TGG - chr3_4:57823184-57823203 Msa0509390:intron 40.0%
GAAACATGTTGGAAGAAGCA+TGG - chr3_4:57823195-57823214 Msa0509390:intron 40.0%
GCAACATTATTATCTCCCTC+AGG + chr3_4:57823276-57823295 None:intergenic 40.0%
! CTTGCTATCAACACTAGTTG+GGG + chr3_4:57823304-57823323 None:intergenic 40.0%
! CCTTGCTATCAACACTAGTT+GGG + chr3_4:57823305-57823324 None:intergenic 40.0%
!! CCAACTAGTGTTGATAGCAA+GGG - chr3_4:57823303-57823322 Msa0509390:intron 40.0%
TACTGCTCATGTGTAATAGC+TGG + chr3_4:57823336-57823355 None:intergenic 40.0%
CAGGTTACTTCTATGTCTGT+TGG - chr3_4:57823426-57823445 Msa0509390:intron 40.0%
TTGGTCATTCACCATCAGAT+AGG - chr3_4:57823445-57823464 Msa0509390:intron 40.0%
AACTCCTGGATCATAGATTC+AGG - chr3_4:57823516-57823535 Msa0509390:intron 40.0%
GCCATACTAATATGACCTGT+AGG + chr3_4:57823618-57823637 None:intergenic 40.0%
TTCAGGACAAGAAAACCATG+AGG - chr3_4:57823787-57823806 Msa0509390:intron 40.0%
AGACCTGTACTACTTGAATC+TGG - chr3_4:57823836-57823855 Msa0509390:intron 40.0%
TAAAGGGATGGTTGAGTGAA+TGG + chr3_4:57823892-57823911 None:intergenic 40.0%
! TCAACTCTTGCATTTTGCTG+AGG + chr3_4:57824377-57824396 None:intergenic 40.0%
! TAAAGTAGAGGCATAGGCTA+AGG + chr3_4:57824600-57824619 None:intergenic 40.0%
! AGCTTGTAAAGTAGAGGCAT+AGG + chr3_4:57824606-57824625 None:intergenic 40.0%
! GCAAGAAAGTGCATCTTTCT+TGG - chr3_4:57824650-57824669 Msa0509390:intron 40.0%
TGTGAAGGATTGGACTGATA+AGG + chr3_4:57824770-57824789 None:intergenic 40.0%
CCAAGGAATATGTGAAGGAT+TGG + chr3_4:57824780-57824799 None:intergenic 40.0%
CCAATCCTTCACATATTCCT+TGG - chr3_4:57824777-57824796 Msa0509390:intron 40.0%
TAGGTCCAAGGAATATGTGA+AGG + chr3_4:57824785-57824804 None:intergenic 40.0%
ATGTTGGTATGATAGGTCCA+AGG + chr3_4:57824797-57824816 None:intergenic 40.0%
GTCAGAAACAGGTTGTATGT+TGG + chr3_4:57824813-57824832 None:intergenic 40.0%
AGTGGGAAGAGAGAATTCAA+TGG + chr3_4:57824885-57824904 None:intergenic 40.0%
TGTTGATGTGGATGTGTCAT+TGG + chr3_4:57824909-57824928 None:intergenic 40.0%
! TGAATGAATAGTGGAAGTGG+TGG + chr3_4:57824939-57824958 None:intergenic 40.0%
! ATACCTGAGTTGACTGATGA+TGG + chr3_4:57825034-57825053 None:intergenic 40.0%
AAGCATGTCAGTCTGATCAT+TGG - chr3_4:57825158-57825177 Msa0509390:intron 40.0%
!! TTGGAGGCATTAGCCAATAA+TGG - chr3_4:57825202-57825221 Msa0509390:intron 40.0%
CAACCAACAGGTTTCACATT+TGG + chr3_4:57825253-57825272 None:intergenic 40.0%
TACACCCATTTACAACCAAC+AGG + chr3_4:57825265-57825284 None:intergenic 40.0%
AGAATCAAGTACCAAGCTGA+TGG - chr3_4:57825286-57825305 Msa0509390:intron 40.0%
! AAAGCAAGATTGGTGGCTAA+AGG - chr3_4:57825325-57825344 Msa0509390:intron 40.0%
! AAGCATTGTTCACATCTAGC+TGG + chr3_4:57825462-57825481 None:intergenic 40.0%
! GAACAATGCTTTTCTTCACG+GGG - chr3_4:57825471-57825490 Msa0509390:intron 40.0%
!! TAGCTTGCTTCAAACCATAG+AGG + chr3_4:57825576-57825595 None:intergenic 40.0%
AAACAAAGAGTAGTCAGCAG+TGG + chr3_4:57825656-57825675 None:intergenic 40.0%
GTGGATGACATTATACTAGC+TGG - chr3_4:57825718-57825737 Msa0509390:intron 40.0%
ATTAGAGGTAGCTCATTCCA+AGG - chr3_4:57825831-57825850 Msa0509390:intron 40.0%
TTACAGATGTGTCTTGCTAC+AGG - chr3_4:57825983-57826002 Msa0509390:intron 40.0%
TGAGTGGCCAATGAAATATC+AGG + chr3_4:57826048-57826067 None:intergenic 40.0%
! CGCAGCTTTATAATGAGTAG+TGG + chr3_4:57826100-57826119 None:intergenic 40.0%
AGATACCTCAAAAATGCTCC+TGG - chr3_4:57826132-57826151 Msa0509390:intron 40.0%
TGGGTTCTTCACTCATATCT+TGG - chr3_4:57826268-57826287 Msa0509390:intron 40.0%
! CCTATATTCAGCTTCTGAAG+AGG + chr3_4:57826325-57826344 None:intergenic 40.0%
CCTCTTCAGAAGCTGAATAT+AGG - chr3_4:57826322-57826341 Msa0509390:intron 40.0%
TGAATATAGGGCTCTATCAG+TGG - chr3_4:57826335-57826354 Msa0509390:intron 40.0%
! AGCTGCTCATTGGTTGAAAT+GGG + chr3_4:57826561-57826580 None:intergenic 40.0%
ATATATCATGCTCCAGCTTG+TGG - chr3_4:57826654-57826673 Msa0509390:intron 40.0%
TATATCATGCTCCAGCTTGT+GGG - chr3_4:57826655-57826674 Msa0509390:intron 40.0%
AGTTATTGAACAGCAGCTTC+TGG + chr3_4:57821971-57821990 None:intergenic 40.0%
CTCGCACAGGATTATAACTT+GGG + chr3_4:57826941-57826960 None:intergenic 40.0%
TCTCGCACAGGATTATAACT+TGG + chr3_4:57822093-57822112 None:intergenic 40.0%
AGTTATAATCCTGTGCGAGA+TGG - chr3_4:57822093-57822112 Msa0509390:intron 40.0%
! CTTATCTCACTAAGTTGGGT+CGG + chr3_4:57827134-57827153 None:intergenic 40.0%
! AAGAAAATTTTCCGACCTCC+CGG + chr3_4:57827348-57827367 None:intergenic 40.0%
TTGTCCGATCTGCTTAAACA+AGG - chr3_4:57827662-57827681 Msa0509390:intron 40.0%
TGTCCGATCTGCTTAAACAA+GGG - chr3_4:57827663-57827682 Msa0509390:intron 40.0%
! GATCCCTTGTTTAAGCAGAT+CGG + chr3_4:57827669-57827688 None:intergenic 40.0%
TGTGTTTATAGGGACATGCA+TGG - chr3_4:57828025-57828044 Msa0509390:intron 40.0%
TTCGGATTCAAGTGAAATGG+AGG - chr3_4:57828205-57828224 Msa0509390:intron 40.0%
CCAGATACCAATCATACTAC+TGG + chr3_4:57828781-57828800 None:intergenic 40.0%
CCAGTAGTATGATTGGTATC+TGG - chr3_4:57828778-57828797 Msa0509390:intron 40.0%
TCGTACTCCCAGTTATTATC+AGG + chr3_4:57828925-57828944 None:intergenic 40.0%
TTAGTAGCAAGCTGAAAGAG+AGG - chr3_4:57829303-57829322 Msa0509390:intron 40.0%
TAGTAGCAAGCTGAAAGAGA+GGG - chr3_4:57829304-57829323 Msa0509390:intron 40.0%
TGCATGGGTGAGAATGTAAA+AGG - chr3_4:57829365-57829384 Msa0509390:intron 40.0%
GCATGGGTGAGAATGTAAAA+GGG - chr3_4:57829366-57829385 Msa0509390:intron 40.0%
GAGAATGTAAAAGGGAATGC+TGG - chr3_4:57829374-57829393 Msa0509390:intron 40.0%
TTGGTTAATACCTGTGATGG+TGG - chr3_4:57829432-57829451 Msa0509390:intron 40.0%
TGCTTGCTTCTATTAGACTC+GGG - chr3_4:57829678-57829697 Msa0509390:intron 40.0%
!! ATTACTTAGCTTTGGGCAAC+AGG - chr3_4:57829785-57829804 Msa0509390:intron 40.0%
!! TTACTTAGCTTTGGGCAACA+GGG - chr3_4:57829786-57829805 Msa0509390:intron 40.0%
!! CATTTTTAGGCCTAAAAGCG+AGG + chr3_4:57829840-57829859 None:intergenic 40.0%
TTCTATAAGGAATTAGGCCC+TGG - chr3_4:57829867-57829886 Msa0509390:intron 40.0%
TATAAATGTGGATGGTGCTC+AGG - chr3_4:57829927-57829946 Msa0509390:intron 40.0%
! TGCGTGAGTGTTGTAAACTT+CGG - chr3_4:57829951-57829970 Msa0509390:intron 40.0%
AGAATCATACGTCAAGCCAA+AGG + chr3_4:57830148-57830167 None:intergenic 40.0%
! TCACTGCCTTGTTAATGAAG+AGG - chr3_4:57830421-57830440 Msa0509390:CDS 40.0%
TGTAAGTAGCTGTGTTGCAA+TGG - chr3_4:57830576-57830595 Msa0509390:five_prime_UTR 40.0%
TTCTTGTCGCACAGAGTCAA+AGG + chr3_4:57821190-57821209 None:intergenic 45.0%
!!! GATACGGGTTGGGTTTGTTT+TGG + chr3_4:57821252-57821271 None:intergenic 45.0%
CTGGTTCAATGATACGGGTT+GGG + chr3_4:57821262-57821281 None:intergenic 45.0%
! ACTGGTTCAATGATACGGGT+TGG + chr3_4:57821263-57821282 None:intergenic 45.0%
!! AGTGCGGTCTTGTTGTTTCT+TGG + chr3_4:57821310-57821329 None:intergenic 45.0%
ACAAGACCGCACTGTTGTTA+AGG - chr3_4:57821317-57821336 Msa0509390:three_prime_UTR 45.0%
! AGAGCAATTCGAGTTTCCAC+AGG + chr3_4:57821369-57821388 None:intergenic 45.0%
AAACCACCGATGAGTGCAAT+CGG + chr3_4:57821406-57821425 None:intergenic 45.0%
GTGGTTTCACGATACGCTTA+AGG - chr3_4:57821419-57821438 Msa0509390:intron 45.0%
GTTTCACGATACGCTTAAGG+AGG - chr3_4:57821422-57821441 Msa0509390:intron 45.0%
GGGATTGTTTGGGAGAACTT+AGG - chr3_4:57821672-57821691 Msa0509390:intron 45.0%
AGGCTCACTAGGATAGCTAA+TGG - chr3_4:57821745-57821764 Msa0509390:intron 45.0%
GCTAGTGACTTGAGCTAACA+AGG + chr3_4:57822012-57822031 None:intergenic 45.0%
TACTATGAACCATCTCGCAC+AGG + chr3_4:57822105-57822124 None:intergenic 45.0%
! TCTGTTTCTCCGGTTCTTGA+CGG - chr3_4:57822433-57822452 Msa0509390:intron 45.0%
TCGTTCAATGCGAAGAGCTT+TGG - chr3_4:57822477-57822496 Msa0509390:intron 45.0%
CGTTCAATGCGAAGAGCTTT+GGG - chr3_4:57822478-57822497 Msa0509390:intron 45.0%
ACGATTTGCACAAGGTGACT+TGG - chr3_4:57822693-57822712 Msa0509390:intron 45.0%
!! TTGCACAAGGTGACTTGGTA+AGG - chr3_4:57822698-57822717 Msa0509390:intron 45.0%
CGTACTCTACAAGTGCAGTT+TGG + chr3_4:57822838-57822857 None:intergenic 45.0%
GAGTCATCAACAGTAGGAGA+AGG + chr3_4:57823042-57823061 None:intergenic 45.0%
! TCTCGTGTTTGCACCTTTTG+TGG - chr3_4:57823153-57823172 Msa0509390:intron 45.0%
!! CCCAACTAGTGTTGATAGCA+AGG - chr3_4:57823302-57823321 Msa0509390:intron 45.0%
! CCCTTGCTATCAACACTAGT+TGG + chr3_4:57823306-57823325 None:intergenic 45.0%
AACTGTGCATGCTTCCAATC+AGG - chr3_4:57823407-57823426 Msa0509390:CDS 45.0%
CATTCACCATCAGATAGGCA+AGG - chr3_4:57823450-57823469 Msa0509390:intron 45.0%
CTTGTACCTTGCCTATCTGA+TGG + chr3_4:57823459-57823478 None:intergenic 45.0%
AGCTCCTGAATCTATGATCC+AGG + chr3_4:57823523-57823542 None:intergenic 45.0%
! ACCATGAGGATGATTGGTTC+TGG - chr3_4:57823801-57823820 Msa0509390:intron 45.0%
ACCAGAACCAATCATCCTCA+TGG + chr3_4:57823805-57823824 None:intergenic 45.0%
!! AAAGGGCACTGTCAGGTAAA+GGG + chr3_4:57823908-57823927 None:intergenic 45.0%
! GCCAAGTCTGAAATGCCAAA+GGG + chr3_4:57823925-57823944 None:intergenic 45.0%
AACTGCATGAACTGCAGCAT+AGG + chr3_4:57824474-57824493 None:intergenic 45.0%
GGCTACAAAAGTGGCATGAA+AGG - chr3_4:57824671-57824690 Msa0509390:intron 45.0%
AGAAACAGGTTCAGCACTAG+GGG + chr3_4:57824846-57824865 None:intergenic 45.0%
CAGAAACAGGTTCAGCACTA+GGG + chr3_4:57824847-57824866 None:intergenic 45.0%
TCAGAAACAGGTTCAGCACT+AGG + chr3_4:57824848-57824867 None:intergenic 45.0%
! GTGGATGTGTCATTGGTAGT+GGG + chr3_4:57824902-57824921 None:intergenic 45.0%
! TGTGGATGTGTCATTGGTAG+TGG + chr3_4:57824903-57824922 None:intergenic 45.0%
!! AATAGTGGAAGTGGTGGATG+GGG + chr3_4:57824933-57824952 None:intergenic 45.0%
!! GAATAGTGGAAGTGGTGGAT+GGG + chr3_4:57824934-57824953 None:intergenic 45.0%
! TGAATAGTGGAAGTGGTGGA+TGG + chr3_4:57824935-57824954 None:intergenic 45.0%
! GGGTGAATGAATAGTGGAAG+TGG + chr3_4:57824942-57824961 None:intergenic 45.0%
GGGTTTGGGTGAATGAATAG+TGG + chr3_4:57824948-57824967 None:intergenic 45.0%
! GACCTAAGTCTTGTGGGTTT+GGG + chr3_4:57824962-57824981 None:intergenic 45.0%
! AGACCTAAGTCTTGTGGGTT+TGG + chr3_4:57824963-57824982 None:intergenic 45.0%
! GGTTGAGACCTAAGTCTTGT+GGG + chr3_4:57824968-57824987 None:intergenic 45.0%
TGGTTGAGACCTAAGTCTTG+TGG + chr3_4:57824969-57824988 None:intergenic 45.0%
!! GACTGATGATGGTGATTGAG+CGG + chr3_4:57825023-57825042 None:intergenic 45.0%
TCACCATCATCAGTCAACTC+AGG - chr3_4:57825028-57825047 Msa0509390:intron 45.0%
CATTAGCCAATAATGGCACC+TGG - chr3_4:57825209-57825228 Msa0509390:intron 45.0%
!! AATGCACCAGGTGCCATTAT+TGG + chr3_4:57825218-57825237 None:intergenic 45.0%
TGGTGTATCAACAATGCACC+AGG + chr3_4:57825230-57825249 None:intergenic 45.0%
CCAACAGGTTTCACATTTGG+TGG + chr3_4:57825250-57825269 None:intergenic 45.0%
CCACCAAATGTGAAACCTGT+TGG - chr3_4:57825247-57825266 Msa0509390:intron 45.0%
GATGAACATGAGACACCTTC+TGG + chr3_4:57825526-57825545 None:intergenic 45.0%
!! GAAGGTGTCTCATGTTCATC+TGG - chr3_4:57825526-57825545 Msa0509390:intron 45.0%
CACAGCACTTCTAGTGTATG+TGG - chr3_4:57825699-57825718 Msa0509390:intron 45.0%
! TAAAGGTGTAGGAGCAGGTT+TGG + chr3_4:57825923-57825942 None:intergenic 45.0%
! ACTGACGTGTCTAAAGGTGT+AGG + chr3_4:57825934-57825953 None:intergenic 45.0%
TCTTGCTACAGGAGGCTTAT+TGG - chr3_4:57825994-57826013 Msa0509390:intron 45.0%
TGGGGTATGTTGATGCAGAT+TGG - chr3_4:57826196-57826215 Msa0509390:intron 45.0%
GGGGTATGTTGATGCAGATT+GGG - chr3_4:57826197-57826216 Msa0509390:intron 45.0%
TATGTTGATGCAGATTGGGC+AGG - chr3_4:57826201-57826220 Msa0509390:intron 45.0%
GACACTAGAAGGTCAACTAC+TGG - chr3_4:57826231-57826250 Msa0509390:intron 45.0%
AGAAACAGCCAACTATCTCC+AGG - chr3_4:57826298-57826317 Msa0509390:intron 45.0%
TGGCAACTTGTGAGCTTCAA+TGG - chr3_4:57826355-57826374 Msa0509390:intron 45.0%
! GCTCATTGGTTGAAATGGGT+AGG + chr3_4:57826557-57826576 None:intergenic 45.0%
! CAGCTGCTCATTGGTTGAAA+TGG + chr3_4:57826562-57826581 None:intergenic 45.0%
CATTTCAACCAATGAGCAGC+TGG - chr3_4:57826560-57826579 Msa0509390:intron 45.0%
GCTAGTGACTTGAGCTAACA+AGG + chr3_4:57822012-57822031 None:intergenic 45.0%
TACTATGAACCATCTCGCAC+AGG + chr3_4:57822105-57822124 None:intergenic 45.0%
!! CTGCTTTGGAAATGAAGCTG+AGG - chr3_4:57827310-57827329 Msa0509390:intron 45.0%
ACAGACACAAAAGAAGGGCA+AGG - chr3_4:57827422-57827441 Msa0509390:intron 45.0%
CAGACACAAAAGAAGGGCAA+GGG - chr3_4:57827423-57827442 Msa0509390:intron 45.0%
AGACACAAAAGAAGGGCAAG+GGG - chr3_4:57827424-57827443 Msa0509390:intron 45.0%
!! TCAGGGGCATTGTTGTAATC+TGG - chr3_4:57827533-57827552 Msa0509390:intron 45.0%
!! GGTTCTGAATCTCGTTCAGT+TGG - chr3_4:57827880-57827899 Msa0509390:intron 45.0%
CAACTAAGCGAAAAACCTCC+AGG - chr3_4:57828084-57828103 Msa0509390:intron 45.0%
ATAAGACAGAGCAGCTTACC+TGG + chr3_4:57828105-57828124 None:intergenic 45.0%
GTGCAGTTATTGAGCCAGTT+TGG - chr3_4:57828125-57828144 Msa0509390:intron 45.0%
CAGGACAAGCAAAACCAAAC+TGG + chr3_4:57828142-57828161 None:intergenic 45.0%
CGACAAGGCATATACCTTTG+TGG + chr3_4:57828464-57828483 None:intergenic 45.0%
ACTATCAAGTGTCAGTCAGC+TGG - chr3_4:57828843-57828862 Msa0509390:intron 45.0%
CTATCAAGTGTCAGTCAGCT+GGG - chr3_4:57828844-57828863 Msa0509390:intron 45.0%
GTAAGTCCTTAAGAGAGGTC+AGG - chr3_4:57829001-57829020 Msa0509390:intron 45.0%
!! AAAGAGAGGGTGTCCAAACA+GGG - chr3_4:57829317-57829336 Msa0509390:intron 45.0%
TTTGCTGCTAACTCCCTGTT+TGG + chr3_4:57829333-57829352 None:intergenic 45.0%
! GTAAAAGGGAATGCTGGCTA+AGG - chr3_4:57829380-57829399 Msa0509390:intron 45.0%
TTCATCTTGTCCACCATCAC+AGG + chr3_4:57829445-57829464 None:intergenic 45.0%
!! ATGGTGGACAAGATGAACAG+AGG - chr3_4:57829448-57829467 Msa0509390:intron 45.0%
ATACTGCAATTGGCAGCCAA+CGG + chr3_4:57829502-57829521 None:intergenic 45.0%
ACGCTACATACATTAGGCAG+TGG - chr3_4:57829546-57829565 Msa0509390:intron 45.0%
CTTCTATTAGACTCGGGATC+AGG - chr3_4:57829684-57829703 Msa0509390:intron 45.0%
GATTCTAACCGCCTTATGCT+TGG + chr3_4:57829818-57829837 None:intergenic 45.0%
!! CGGTTAGAATCCTCGCTTTT+AGG - chr3_4:57829827-57829846 Msa0509390:intron 45.0%
! GCGTGAGTGTTGTAAACTTC+GGG - chr3_4:57829952-57829971 Msa0509390:intron 45.0%
CAATGCAGCAAACTCATGGA+AGG + chr3_4:57830460-57830479 None:intergenic 45.0%
AGCACAATGCAGCAAACTCA+TGG + chr3_4:57830464-57830483 None:intergenic 45.0%
TTGCAGTTGCAGCGATGAAC+TGG + chr3_4:57821281-57821300 None:intergenic 50.0%
!! GCGGTCTTGTTGTTTCTTGG+TGG + chr3_4:57821307-57821326 None:intergenic 50.0%
AGACCGCACTGTTGTTAAGG+TGG - chr3_4:57821320-57821339 Msa0509390:three_prime_UTR 50.0%
TCGAATTGCTCTTTCCAGGG+TGG - chr3_4:57821377-57821396 Msa0509390:intron 50.0%
ACGCTTAAGGAGGCTAAACG+CGG - chr3_4:57821432-57821451 Msa0509390:intron 50.0%
GTGACTTGAGCTAACAAGGC+TGG + chr3_4:57822008-57822027 None:intergenic 50.0%
GTACCAACGTCTTTGTTGCG+TGG + chr3_4:57822334-57822353 None:intergenic 50.0%
ACTGAAGAAGGACCATCGCT+TGG + chr3_4:57822412-57822431 None:intergenic 50.0%
!! TCAATGCGAAGAGCTTTGGG+CGG - chr3_4:57822481-57822500 Msa0509390:intron 50.0%
!! TCGATCCTCTTTTTCGCGCT+TGG - chr3_4:57822557-57822576 Msa0509390:intron 50.0%
CGATTCCAAGCGCGAAAAAG+AGG + chr3_4:57822565-57822584 None:intergenic 50.0%
!! CAAAGGGCACTGTCAGGTAA+AGG + chr3_4:57823909-57823928 None:intergenic 50.0%
CTTTACCTGACAGTGCCCTT+TGG - chr3_4:57823907-57823926 Msa0509390:intron 50.0%
!! AAATGCCAAAGGGCACTGTC+AGG + chr3_4:57823915-57823934 None:intergenic 50.0%
GCCCTTTGGCATTTCAGACT+TGG - chr3_4:57823921-57823940 Msa0509390:intron 50.0%
! GGCCAAGTCTGAAATGCCAA+AGG + chr3_4:57823926-57823945 None:intergenic 50.0%
CACCCAAACCCACAAGACTT+AGG - chr3_4:57824957-57824976 Msa0509390:intron 50.0%
GAGGTAGCTCATTCCAAGGA+AGG - chr3_4:57825835-57825854 Msa0509390:intron 50.0%
! GTGTCTAAAGGTGTAGGAGC+AGG + chr3_4:57825928-57825947 None:intergenic 50.0%
CAGATGTGTCTTGCTACAGG+AGG - chr3_4:57825986-57826005 Msa0509390:intron 50.0%
!!! CAAGGCCAGGAGCATTTTTG+AGG + chr3_4:57826140-57826159 None:intergenic 50.0%
CTCAAAAATGCTCCTGGCCT+TGG - chr3_4:57826138-57826157 Msa0509390:intron 50.0%
GGAAACAGAATACCAAGGCC+AGG + chr3_4:57826153-57826172 None:intergenic 50.0%
CAGGTTGTGTGGACACTAGA+AGG - chr3_4:57826220-57826239 Msa0509390:intron 50.0%
GAAGAGGACCTGGAGATAGT+TGG + chr3_4:57826309-57826328 None:intergenic 50.0%
! TTCAGCTTCTGAAGAGGACC+TGG + chr3_4:57826319-57826338 None:intergenic 50.0%
GAAATCTGCCAGCTGCTCAT+TGG + chr3_4:57826571-57826590 None:intergenic 50.0%
GTGACTTGAGCTAACAAGGC+TGG + chr3_4:57822008-57822027 None:intergenic 50.0%
GCTGAGGTTAGATACAGTGC+CGG - chr3_4:57827326-57827345 Msa0509390:intron 50.0%
CTGAGGTTAGATACAGTGCC+GGG - chr3_4:57827327-57827346 Msa0509390:intron 50.0%
CAGTTGCCTGACCTCTCTTA+AGG + chr3_4:57829010-57829029 None:intergenic 50.0%
ATTTGCCTTATGGGGCGTGA+AGG - chr3_4:57829178-57829197 Msa0509390:intron 50.0%
AACATCCTTCACGCCCCATA+AGG + chr3_4:57829186-57829205 None:intergenic 50.0%
!! GAAAGAGAGGGTGTCCAAAC+AGG - chr3_4:57829316-57829335 Msa0509390:intron 50.0%
ACAGGGAGTTAGCAGCAAAC+TGG - chr3_4:57829334-57829353 Msa0509390:intron 50.0%
CAGGGAGTTAGCAGCAAACT+GGG - chr3_4:57829335-57829354 Msa0509390:intron 50.0%
AGGGAGTTAGCAGCAAACTG+GGG - chr3_4:57829336-57829355 Msa0509390:intron 50.0%
TTGGCCATGCATGCATGTCA+TGG + chr3_4:57829579-57829598 None:intergenic 50.0%
AACCGCCTTATGCTTGGATC+AGG + chr3_4:57829812-57829831 None:intergenic 50.0%
CCTTAACTCTCTTCATCGGG+CGG - chr3_4:57830380-57830399 Msa0509390:CDS 50.0%
TCCACAGGCTCCACCTTCTT+CGG + chr3_4:57821354-57821373 None:intergenic 55.0%
! TGGTCGCCGATTGCACTCAT+CGG - chr3_4:57821397-57821416 Msa0509390:intron 55.0%
CGCTTAAGGAGGCTAAACGC+GGG - chr3_4:57821433-57821452 Msa0509390:intron 55.0%
GCTTAAGGAGGCTAAACGCG+GGG - chr3_4:57821434-57821453 Msa0509390:intron 55.0%
!! CAATGCGAAGAGCTTTGGGC+GGG - chr3_4:57822482-57822501 Msa0509390:intron 55.0%
TGCCAATCATGCTGCACCTG+AGG - chr3_4:57823257-57823276 Msa0509390:intron 55.0%
GCCAATCATGCTGCACCTGA+GGG - chr3_4:57823258-57823277 Msa0509390:intron 55.0%
TCCCTCAGGTGCAGCATGAT+TGG + chr3_4:57823262-57823281 None:intergenic 55.0%
GGCACTGTCAGGTAAAGGGA+TGG + chr3_4:57823904-57823923 None:intergenic 55.0%
GGTGGATGGGGATGTTGATG+TGG + chr3_4:57824921-57824940 None:intergenic 55.0%
TGCAGATTGGGCAGGTTGTG+TGG - chr3_4:57826209-57826228 Msa0509390:intron 55.0%
ATCATGCTCCAGCTTGTGGG+AGG - chr3_4:57826658-57826677 Msa0509390:intron 55.0%
TTCAACAGCCTCCCACAAGC+TGG + chr3_4:57826669-57826688 None:intergenic 55.0%
! AGGTTAGATACAGTGCCGGG+AGG - chr3_4:57827330-57827349 Msa0509390:intron 55.0%
! TAGATACAGTGCCGGGAGGT+CGG - chr3_4:57827334-57827353 Msa0509390:intron 55.0%
ACAAAAGAAGGGCAAGGGGC+AGG - chr3_4:57827428-57827447 Msa0509390:intron 55.0%
CAAAAGAAGGGCAAGGGGCA+GGG - chr3_4:57827429-57827448 Msa0509390:intron 55.0%
AAAAGAAGGGCAAGGGGCAG+GGG - chr3_4:57827430-57827449 Msa0509390:intron 55.0%
AGACAGAGCAGCTTACCTGG+AGG + chr3_4:57828102-57828121 None:intergenic 55.0%
GGCGTGAAGGATGTTGATCG+AGG - chr3_4:57829191-57829210 Msa0509390:intron 55.0%
TTAGCAGCAAACTGGGGCGA+AGG - chr3_4:57829342-57829361 Msa0509390:intron 55.0%
! AAACTGGGGCGAAGGTGCAT+GGG - chr3_4:57829350-57829369 Msa0509390:intron 55.0%
CCATGCATGCATGTCATGGC+AGG + chr3_4:57829575-57829594 None:intergenic 55.0%
CCTGCCATGACATGCATGCA+TGG - chr3_4:57829572-57829591 Msa0509390:intron 55.0%
CAGGGCCTGATCCAAGCATA+AGG - chr3_4:57829804-57829823 Msa0509390:intron 55.0%
GGCCTGATCCAAGCATAAGG+CGG - chr3_4:57829807-57829826 Msa0509390:intron 55.0%
CCGCCCGATGAAGAGAGTTA+AGG + chr3_4:57830383-57830402 None:intergenic 55.0%
GGTGGAATCGCCACCGAAGA+AGG - chr3_4:57821338-57821357 Msa0509390:three_prime_UTR 60.0%
GGAATCGCCACCGAAGAAGG+TGG - chr3_4:57821341-57821360 Msa0509390:three_prime_UTR 60.0%
ACAGGCTCCACCTTCTTCGG+TGG + chr3_4:57821351-57821370 None:intergenic 60.0%
ACCGAAGAAGGTGGAGCCTG+TGG - chr3_4:57821350-57821369 Msa0509390:three_prime_UTR 60.0%
! TCGCCGATTGCACTCATCGG+TGG - chr3_4:57821400-57821419 Msa0509390:intron 60.0%
GCGCCACGCAACAAAGACGT+TGG - chr3_4:57822328-57822347 Msa0509390:intron 60.0%
CTCCCTCCGCCCTTGCATTT+GGG - chr3_4:57827479-57827498 Msa0509390:intron 60.0%
TCCCTCCGCCCTTGCATTTG+GGG - chr3_4:57827480-57827499 Msa0509390:intron 60.0%
AGACCCACAGCTGCACTTGC+AGG - chr3_4:57827909-57827928 Msa0509390:intron 60.0%
CAGCCTGCAAGTGCAGCTGT+GGG + chr3_4:57827915-57827934 None:intergenic 60.0%
!! GCTGGGCGCTGCACCTATTT+TGG - chr3_4:57828861-57828880 Msa0509390:intron 60.0%
GAGGTCAGGCAACTGAGCGT+TGG - chr3_4:57829015-57829034 Msa0509390:intron 60.0%
! CAAACTGGGGCGAAGGTGCA+TGG - chr3_4:57829349-57829368 Msa0509390:intron 60.0%
AGTGCAATCGGCGACCACCC+TGG + chr3_4:57821394-57821413 None:intergenic 65.0%
GCTCCCTCCGCCCTTGCATT+TGG - chr3_4:57827478-57827497 Msa0509390:intron 65.0%
CCCCCAAATGCAAGGGCGGA+GGG + chr3_4:57827484-57827503 None:intergenic 65.0%
CCCTCCGCCCTTGCATTTGG+GGG - chr3_4:57827481-57827500 Msa0509390:intron 65.0%
ACCCCCAAATGCAAGGGCGG+AGG + chr3_4:57827485-57827504 None:intergenic 65.0%
CGCACCCCCAAATGCAAGGG+CGG + chr3_4:57827488-57827507 None:intergenic 65.0%
CGCCCTTGCATTTGGGGGTG+CGG - chr3_4:57827486-57827505 Msa0509390:intron 65.0%
! GCCCTTGCATTTGGGGGTGC+GGG - chr3_4:57827487-57827506 Msa0509390:intron 65.0%
CCCCGCACCCCCAAATGCAA+GGG + chr3_4:57827491-57827510 None:intergenic 65.0%
! CCCTTGCATTTGGGGGTGCG+GGG - chr3_4:57827488-57827507 Msa0509390:intron 65.0%
! CCTTGCATTTGGGGGTGCGG+GGG - chr3_4:57827489-57827508 Msa0509390:intron 65.0%
! CTTGCATTTGGGGGTGCGGG+GGG - chr3_4:57827490-57827509 Msa0509390:intron 65.0%
! TTGCATTTGGGGGTGCGGGG+GGG - chr3_4:57827491-57827510 Msa0509390:intron 65.0%
ATGCCCCTGACCCGTACCGT+GGG + chr3_4:57827523-57827542 None:intergenic 65.0%
AATGCCCCTGACCCGTACCG+TGG + chr3_4:57827524-57827543 None:intergenic 65.0%
GCAGCCTGCAAGTGCAGCTG+TGG + chr3_4:57827916-57827935 None:intergenic 65.0%
CCCCCGCACCCCCAAATGCA+AGG + chr3_4:57827492-57827511 None:intergenic 70.0%
GGGGGATAGCCCCCACGGTA+CGG - chr3_4:57827509-57827528 Msa0509390:intron 70.0%
GGGGATAGCCCCCACGGTAC+GGG - chr3_4:57827510-57827529 Msa0509390:intron 70.0%
TAGCCCCCACGGTACGGGTC+AGG - chr3_4:57827515-57827534 Msa0509390:intron 70.0%
AGCCCCCACGGTACGGGTCA+GGG - chr3_4:57827516-57827535 Msa0509390:intron 70.0%
TGCCCCTGACCCGTACCGTG+GGG + chr3_4:57827522-57827541 None:intergenic 70.0%
TGCGGGGGGGATAGCCCCCA+CGG - chr3_4:57827504-57827523 Msa0509390:intron 75.0%
GCCCCCACGGTACGGGTCAG+GGG - chr3_4:57827517-57827536 Msa0509390:intron 75.0%
GCCCCTGACCCGTACCGTGG+GGG + chr3_4:57827521-57827540 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 57820973 57830655 57820973 ID=Msa0509390;Name=Msa0509390
chr3_4 mRNA 57820973 57830655 57820973 ID=Msa0509390-mRNA-1;Parent=Msa0509390;Name=Msa0509390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|0.66|0.5|4|415|158
chr3_4 exon 57820973 57821372 57820973 ID=Msa0509390-mRNA-1:exon:13292;Parent=Msa0509390-mRNA-1
chr3_4 exon 57823369 57823439 57823369 ID=Msa0509390-mRNA-1:exon:13291;Parent=Msa0509390-mRNA-1
chr3_4 exon 57823523 57823592 57823523 ID=Msa0509390-mRNA-1:exon:13290;Parent=Msa0509390-mRNA-1
chr3_4 exon 57830101 57830655 57830101 ID=Msa0509390-mRNA-1:exon:13289;Parent=Msa0509390-mRNA-1
chr3_4 five_prime_UTR 57830452 57830655 57830452 ID=Msa0509390-mRNA-1:five_prime_utr;Parent=Msa0509390-mRNA-1
chr3_4 CDS 57830101 57830451 57830101 ID=Msa0509390-mRNA-1:cds;Parent=Msa0509390-mRNA-1
chr3_4 CDS 57823523 57823592 57823523 ID=Msa0509390-mRNA-1:cds;Parent=Msa0509390-mRNA-1
chr3_4 CDS 57823384 57823439 57823384 ID=Msa0509390-mRNA-1:cds;Parent=Msa0509390-mRNA-1
chr3_4 three_prime_UTR 57823369 57823383 57823369 ID=Msa0509390-mRNA-1:three_prime_utr;Parent=Msa0509390-mRNA-1
chr3_4 three_prime_UTR 57820973 57821372 57820973 ID=Msa0509390-mRNA-1:three_prime_utr;Parent=Msa0509390-mRNA-1
Gene Sequence

>Msa0509390

ATGGCAAAATCCTTTGACTCTGTGCGACAAGAATTATTACGAATTGCAAAATCTGCAACAAAAATCCATAGACCAAAACAAACCCAACCCGTATCATTGAACCAGTTCATCGCTGCAACTGCAAGAACCACCAAGAAACAACAAGACCGCACTGTTGTTAAGGTGGAATCGCCACCGAAGAAGGTGGAGCCTGTGGAAACTCGAATTGCTCTTTCCAGGGTGGTCGCCGATTGCACTCATCGGTGGTTTCACGATACGCTTAAGGAGGCTAAACGCGGGGATCTTTCCAGTCAAGTTCTTGTTGGTCAAATGTATTGCTCTGGATATGGTGTTTCTAGAAATCCTCAAAAGGGACATGCATGGATCAGTAGAGCATCAAGAAGTCGAAATTCAGTTTGGCAACTAAGCGAAAAACCTCCAGGTTATAGAGCAAGTGATTCGGATTCAAGTGAAATGGAGGAAAAATCTACTACTTAG

Protein sequence

>Msa0509390

MAKSFDSVRQELLRIAKSATKIHRPKQTQPVSLNQFIAATARTTKKQQDRTVVKVESPPKKVEPVETRIALSRVVADCTHRWFHDTLKEAKRGDLSSQVLVGQMYCSGYGVSRNPQKGHAWISRASRSRNSVWQLSEKPPGYRASDSDSSEMEEKSTT*