Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104720 | XP_024631264.1 | 93.808 | 646 | 13 | 2 | 1 | 619 | 1 | 646 | 0.0 | 1248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104720 | sp|Q8W4A7|GUX3_ARATH | 65.224 | 624 | 152 | 11 | 4 | 594 | 3 | 594 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104720 | A0A396JHX9 | 93.808 | 646 | 13 | 2 | 1 | 619 | 1 | 646 | 0.0 | 1248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030160 | Msa0104720 | 0.841973 | 3.432962e-58 | -8.615850e-47 |
| Msa0104720 | Msa0106620 | 0.815893 | 7.321644e-52 | -8.615850e-47 |
| Msa0104720 | Msa0106710 | 0.811367 | 7.252623e-51 | -8.615850e-47 |
| Msa0104720 | Msa0108410 | 0.814513 | 1.482519e-51 | -8.615850e-47 |
| Msa0104720 | Msa0125650 | 0.813275 | 2.778963e-51 | -8.615850e-47 |
| Msa0104720 | Msa0170210 | 0.812307 | 4.528393e-51 | -8.615850e-47 |
| Msa0104720 | Msa0217700 | 0.810027 | 1.413652e-50 | -8.615850e-47 |
| Msa0104720 | Msa0227340 | 0.826167 | 3.146861e-54 | -8.615850e-47 |
| Msa0104720 | Msa0232020 | 0.808212 | 3.459795e-50 | -8.615850e-47 |
| Msa0104720 | Msa0251710 | 0.807670 | 4.513680e-50 | -8.615850e-47 |
| Msa0104720 | Msa0264830 | 0.833186 | 6.162048e-56 | -8.615850e-47 |
| Msa0104720 | Msa0267790 | 0.800842 | 1.191920e-48 | -8.615850e-47 |
| Msa0104720 | Msa0287870 | 0.802424 | 5.647609e-49 | -8.615850e-47 |
| Msa0104720 | Msa0302870 | 0.826602 | 2.479204e-54 | -8.615850e-47 |
| Msa0104720 | Msa0317970 | 0.803607 | 3.216409e-49 | -8.615850e-47 |
| Msa0104720 | Msa0322900 | 0.805186 | 1.507468e-49 | -8.615850e-47 |
| Msa0104720 | Msa0340340 | 0.835975 | 1.227162e-56 | -8.615850e-47 |
| Msa0104720 | Msa0403640 | 0.811914 | 5.517170e-51 | -8.615850e-47 |
| Msa0104720 | Msa0450400 | -0.828379 | 9.290514e-55 | -8.615850e-47 |
| Msa0104720 | Msa0485240 | 0.815724 | 7.984378e-52 | -8.615850e-47 |
| Msa0104720 | Msa0562570 | 0.805945 | 1.044693e-49 | -8.615850e-47 |
| Msa0104720 | Msa0579660 | 0.800772 | 1.232150e-48 | -8.615850e-47 |
| Msa0104720 | Msa0583360 | -0.808896 | 2.471925e-50 | -8.615850e-47 |
| Msa0104720 | Msa0664540 | 0.800977 | 1.118898e-48 | -8.615850e-47 |
| Msa0104720 | Msa0698290 | 0.800748 | 1.246231e-48 | -8.615850e-47 |
| Msa0104720 | Msa0702720 | 0.811565 | 6.569648e-51 | -8.615850e-47 |
| Msa0104720 | Msa0708310 | 0.812945 | 3.284034e-51 | -8.615850e-47 |
| Msa0104720 | Msa0733010 | 0.806205 | 9.211152e-50 | -8.615850e-47 |
| Msa0104720 | Msa0795070 | 0.802260 | 6.103555e-49 | -8.615850e-47 |
| Msa0104720 | Msa0814600 | 0.808226 | 3.437307e-50 | -8.615850e-47 |
| Msa0104720 | Msa0828240 | 0.826572 | 2.521064e-54 | -8.615850e-47 |
| Msa0104720 | Msa0899970 | 0.814483 | 1.505808e-51 | -8.615850e-47 |
| Msa0104720 | Msa0936380 | 0.803342 | 3.649967e-49 | -8.615850e-47 |
| Msa0104720 | Msa0965080 | 0.813034 | 3.140118e-51 | -8.615850e-47 |
| Msa0104720 | Msa0965290 | 0.816535 | 5.260487e-52 | -8.615850e-47 |
| Msa0104720 | Msa0999680 | 0.818237 | 2.176374e-52 | -8.615850e-47 |
| Msa0104720 | Msa1006810 | 0.812929 | 3.309657e-51 | -8.615850e-47 |
| Msa0104720 | Msa1026480 | 0.806201 | 9.228043e-50 | -8.615850e-47 |
| Msa0104720 | Msa1034500 | 0.811836 | 5.736391e-51 | -8.615850e-47 |
| Msa0104720 | Msa1066670 | 0.807915 | 4.002477e-50 | -8.615850e-47 |
| Msa0104720 | Msa1131050 | 0.810803 | 9.611335e-51 | -8.615850e-47 |
| Msa0104720 | Msa1147740 | 0.801302 | 9.601333e-49 | -8.615850e-47 |
| Msa0104720 | Msa1155170 | -0.803131 | 4.036394e-49 | -8.615850e-47 |
| Msa0104720 | Msa1225860 | -0.812361 | 4.406780e-51 | -8.615850e-47 |
| Msa0104720 | Msa1238820 | 0.819769 | 9.761997e-53 | -8.615850e-47 |
| Msa0104720 | Msa1341840 | 0.821915 | 3.131551e-53 | -8.615850e-47 |
| Msa0104720 | Msa1418240 | 0.813211 | 2.870687e-51 | -8.615850e-47 |
| Msa0104720 | Msa1425090 | 0.808104 | 3.648567e-50 | -8.615850e-47 |
| Msa0104720 | Msa1453360 | 0.807928 | 3.977863e-50 | -8.615850e-47 |
| Msa0104720 | Msa1458680 | 0.806005 | 1.014987e-49 | -8.615850e-47 |
| Msa0104720 | Msa1459100 | 0.810813 | 9.563208e-51 | -8.615850e-47 |
| Msa0104720 | Msa1461370 | 0.823459 | 1.369232e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104720 | MtrunA17_Chr1g0159301 | 93.808 | 646 | 13 | 2 | 1 | 619 | 1 | 646 | 0.0 | 1248 |
| Msa0104720 | MtrunA17_Chr3g0129911 | 62.597 | 647 | 201 | 8 | 1 | 619 | 4 | 637 | 0.0 | 812 |
| Msa0104720 | MtrunA17_Chr1g0153481 | 47.095 | 482 | 212 | 7 | 135 | 574 | 108 | 588 | 7.58e-155 | 458 |
| Msa0104720 | MtrunA17_Chr1g0153471 | 45.798 | 476 | 221 | 7 | 135 | 574 | 110 | 584 | 3.86e-144 | 431 |
| Msa0104720 | MtrunA17_Chr1g0191821 | 39.851 | 537 | 259 | 11 | 90 | 576 | 28 | 550 | 1.40e-122 | 374 |
| Msa0104720 | MtrunA17_Chr7g0272921 | 40.175 | 458 | 216 | 7 | 166 | 574 | 107 | 555 | 2.00e-117 | 360 |
| Msa0104720 | MtrunA17_Chr1g0190421 | 36.000 | 175 | 106 | 5 | 277 | 448 | 16 | 187 | 1.52e-28 | 120 |
| Msa0104720 | MtrunA17_Chr7g0274421 | 35.758 | 165 | 101 | 4 | 286 | 448 | 35 | 196 | 5.99e-27 | 115 |
| Msa0104720 | MtrunA17_Chr1g0193011 | 26.538 | 260 | 135 | 9 | 282 | 497 | 18 | 265 | 4.94e-16 | 79.7 |
| Msa0104720 | MtrunA17_Chr7g0270281 | 26.070 | 257 | 134 | 8 | 285 | 497 | 24 | 268 | 6.46e-15 | 76.6 |
| Msa0104720 | MtrunA17_Chr4g0074911 | 32.479 | 117 | 76 | 1 | 282 | 395 | 19 | 135 | 8.16e-15 | 73.9 |
| Msa0104720 | MtrunA17_Chr7g0271581 | 23.622 | 254 | 140 | 7 | 287 | 497 | 43 | 285 | 2.27e-13 | 72.0 |
| Msa0104720 | MtrunA17_Chr4g0056181 | 25.000 | 176 | 117 | 5 | 284 | 447 | 36 | 208 | 3.19e-12 | 69.3 |
| Msa0104720 | MtrunA17_Chr5g0399211 | 25.568 | 176 | 116 | 5 | 284 | 447 | 49 | 221 | 9.73e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104720 | AT1G77130.1 | 65.224 | 624 | 152 | 11 | 4 | 594 | 3 | 594 | 0.0 | 815 |
| Msa0104720 | AT3G18660.1 | 58.075 | 644 | 207 | 10 | 10 | 609 | 17 | 641 | 0.0 | 721 |
| Msa0104720 | AT3G18660.3 | 58.075 | 644 | 206 | 10 | 10 | 609 | 17 | 640 | 0.0 | 721 |
| Msa0104720 | AT3G18660.2 | 58.114 | 647 | 206 | 11 | 10 | 609 | 17 | 645 | 0.0 | 717 |
| Msa0104720 | AT4G33330.5 | 47.942 | 486 | 209 | 8 | 135 | 579 | 43 | 525 | 9.42e-157 | 461 |
| Msa0104720 | AT4G33330.1 | 47.942 | 486 | 209 | 8 | 135 | 579 | 111 | 593 | 1.02e-155 | 461 |
| Msa0104720 | AT4G33330.4 | 47.942 | 486 | 209 | 8 | 135 | 579 | 122 | 604 | 1.15e-155 | 461 |
| Msa0104720 | AT4G33330.2 | 48.441 | 481 | 204 | 8 | 135 | 574 | 111 | 588 | 2.26e-155 | 461 |
| Msa0104720 | AT1G08990.1 | 44.512 | 492 | 214 | 12 | 135 | 576 | 79 | 561 | 1.74e-129 | 392 |
| Msa0104720 | AT1G54940.1 | 41.548 | 491 | 222 | 11 | 135 | 574 | 74 | 550 | 2.86e-122 | 373 |
| Msa0104720 | AT4G33330.3 | 46.264 | 348 | 144 | 7 | 135 | 441 | 122 | 467 | 1.02e-93 | 296 |
| Msa0104720 | AT5G18480.1 | 37.778 | 180 | 106 | 5 | 270 | 447 | 16 | 191 | 1.85e-31 | 129 |
| Msa0104720 | AT1G60470.1 | 27.509 | 269 | 134 | 9 | 278 | 497 | 11 | 267 | 5.65e-18 | 85.9 |
| Msa0104720 | AT4G26250.1 | 27.037 | 270 | 141 | 9 | 272 | 497 | 12 | 269 | 9.30e-17 | 82.4 |
| Msa0104720 | AT1G09350.1 | 27.132 | 258 | 131 | 8 | 285 | 497 | 15 | 260 | 1.65e-16 | 81.6 |
| Msa0104720 | AT1G56600.1 | 25.267 | 281 | 148 | 9 | 262 | 497 | 3 | 266 | 4.31e-16 | 80.5 |
| Msa0104720 | AT1G60450.1 | 26.794 | 209 | 112 | 4 | 280 | 447 | 13 | 221 | 5.20e-16 | 80.1 |
| Msa0104720 | AT2G47180.1 | 22.742 | 299 | 170 | 9 | 275 | 529 | 19 | 300 | 7.46e-14 | 73.9 |
| Msa0104720 | AT5G30500.2 | 24.500 | 200 | 111 | 3 | 285 | 444 | 24 | 223 | 1.05e-13 | 71.6 |
| Msa0104720 | AT5G30500.1 | 31.858 | 113 | 74 | 1 | 285 | 394 | 24 | 136 | 2.18e-12 | 68.9 |
| Msa0104720 | AT2G35710.4 | 26.966 | 178 | 113 | 6 | 284 | 448 | 61 | 234 | 5.48e-12 | 67.8 |
| Msa0104720 | AT2G35710.1 | 26.966 | 178 | 113 | 6 | 284 | 448 | 61 | 234 | 5.04e-11 | 65.9 |
| Msa0104720 | AT4G16600.1 | 27.119 | 177 | 114 | 7 | 284 | 448 | 57 | 230 | 5.96e-11 | 65.5 |
Find 158 sgRNAs with CRISPR-Local
Find 507 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACTTCTTGAAACATTTC+TGG | 0.133286 | 1_3:+12885460 | Msa0104720:CDS |
| ATTGCTGTAGTTTCCTTTCT+TGG | 0.140768 | 1_3:-12885757 | None:intergenic |
| GCCGAATTGGAAAATTATTT+TGG | 0.148185 | 1_3:+12883172 | Msa0104720:CDS |
| TATGCTTCTGGTTCTGCTTT+TGG | 0.153956 | 1_3:-12885138 | None:intergenic |
| TTTCAAGAACATTAGTTATT+TGG | 0.160948 | 1_3:-12883577 | None:intergenic |
| TTGCACATTTCAACTACTTA+TGG | 0.215615 | 1_3:+12885347 | Msa0104720:CDS |
| TCTTCTTCATCTATCCATTC+TGG | 0.242049 | 1_3:-12883752 | None:intergenic |
| TGACGTGGCTCAACGGTGTT+AGG | 0.251716 | 1_3:-12879575 | None:intergenic |
| TTCAAGAAGTTCATGTGTTT+TGG | 0.260706 | 1_3:-12885450 | None:intergenic |
| TTCCACTCGTTATATGCTTC+TGG | 0.267699 | 1_3:-12885150 | None:intergenic |
| GCGACGAAAACTCGTCTCTT+TGG | 0.290093 | 1_3:+12885507 | Msa0104720:CDS |
| TCCTGATTCTTTGAATTGTA+TGG | 0.290849 | 1_3:-12885113 | None:intergenic |
| GGAGAGTATGTTATGGCATT+GGG | 0.309950 | 1_3:+12885845 | Msa0104720:CDS |
| GGCATTGGGGTGACAAGAAT+TGG | 0.313543 | 1_3:+12885859 | Msa0104720:CDS |
| GAAGGATAAGGACACATATC+AGG | 0.317828 | 1_3:+12883604 | Msa0104720:CDS |
| TGCAATTTATACTCCTATCT+TGG | 0.320523 | 1_3:-12883148 | None:intergenic |
| GATTATCAACTTCTTCATTC+AGG | 0.320645 | 1_3:+12879600 | Msa0104720:CDS |
| ACTTCTGTATATAAAATCTA+AGG | 0.339295 | 1_3:-12886163 | None:intergenic |
| TCCGAGATTACGACTGCAAC+TGG | 0.347243 | 1_3:+12885589 | Msa0104720:CDS |
| AGGCGACGAGGATGAGAAAA+AGG | 0.356243 | 1_3:+12885485 | Msa0104720:CDS |
| AACGCGTGATCTCGTGATTC+TGG | 0.359918 | 1_3:+12885032 | Msa0104720:CDS |
| TATGATTGCTAAATTGCATA+TGG | 0.362612 | 1_3:+12886040 | Msa0104720:three_prime_UTR |
| TCCATACAATTCAAAGAATC+AGG | 0.366674 | 1_3:+12885112 | Msa0104720:CDS |
| GAAGAAAGAGAAAACTTAGA+TGG | 0.367058 | 1_3:-12879471 | None:intergenic |
| GTATAAATTGCAAGCCGAAT+TGG | 0.369269 | 1_3:+12883159 | Msa0104720:CDS |
| AGGACTACATGCTCAGCTTC+TGG | 0.371387 | 1_3:-12883683 | None:intergenic |
| TCTTGAAAATTTGAAGGATA+AGG | 0.375525 | 1_3:+12883592 | Msa0104720:CDS |
| AAGAATGAGGTGGTGGAGAC+TGG | 0.379142 | 1_3:-12879363 | None:intergenic |
| CTCTCTGAGTTTATGCAGGT+CGG | 0.379464 | 1_3:-12884056 | None:intergenic |
| TAATGTTCTTGAAAATTTGA+AGG | 0.384534 | 1_3:+12883586 | Msa0104720:CDS |
| GACGAGCTGCTACATAATAT+TGG | 0.391044 | 1_3:-12886064 | None:intergenic |
| AAGCTTCCCTGCGACAAGTC+AGG | 0.395485 | 1_3:+12883854 | Msa0104720:CDS |
| TGAACTATCAGTTCCTTTGA+AGG | 0.396557 | 1_3:+12884105 | Msa0104720:CDS |
| CTTTATGTCATCCACTATCT+AGG | 0.402882 | 1_3:+12885546 | Msa0104720:CDS |
| TTTCCTGGTGCCTGAATCCT+AGG | 0.405848 | 1_3:-12883806 | None:intergenic |
| TCCAACACTACCTAGGATTC+AGG | 0.408343 | 1_3:+12883796 | Msa0104720:CDS |
| GAGAAGCTGCAGTTACCTAT+TGG | 0.408531 | 1_3:+12884076 | Msa0104720:CDS |
| GGGAGAGTATGTTATGGCAT+TGG | 0.410396 | 1_3:+12885844 | Msa0104720:CDS |
| AGGAGTGGCTTGGCAGCAGC+TGG | 0.412642 | 1_3:+12885081 | Msa0104720:CDS |
| CACATATTCCATTCCAAGAT+AGG | 0.413633 | 1_3:+12883135 | Msa0104720:CDS |
| GTCTTGCTGCTTCAATCTGC+AGG | 0.421473 | 1_3:-12883907 | None:intergenic |
| GAACTTCTTGAAACATTTCT+GGG | 0.433094 | 1_3:+12885461 | Msa0104720:CDS |
| TTCTCTCGTTCGTCCTATAC+CGG | 0.436026 | 1_3:+12886009 | Msa0104720:three_prime_UTR |
| GTTTCTGGGAGAGTATGTTA+TGG | 0.438372 | 1_3:+12885838 | Msa0104720:CDS |
| ATATTTCAGACATCTCAAAA+AGG | 0.446028 | 1_3:-12885263 | None:intergenic |
| ATCCTACAATGGTGGTGACC+AGG | 0.447256 | 1_3:+12885389 | Msa0104720:CDS |
| GCGTTTGAAAACGTGCTTTG+AGG | 0.447428 | 1_3:+12885809 | Msa0104720:CDS |
| ATTACAGCAAATTTCGTCTC+TGG | 0.450343 | 1_3:+12885172 | Msa0104720:CDS |
| GGATTGTTGCATAAGCTTCT+CGG | 0.451047 | 1_3:-12884942 | None:intergenic |
| TCAGTTCCTTTGAAGGCTAA+AGG | 0.454613 | 1_3:+12884112 | Msa0104720:CDS |
| GATAGTTCACATGAACCAAT+AGG | 0.459168 | 1_3:-12884091 | None:intergenic |
| GACGTGGCTCAACGGTGTTA+GGG | 0.461218 | 1_3:-12879574 | None:intergenic |
| CTAGATAGTGGATGACATAA+AGG | 0.461375 | 1_3:-12885545 | None:intergenic |
| TGAATGAAGAAGTTGATAAT+CGG | 0.465528 | 1_3:-12879598 | None:intergenic |
| TGCAGAAGTTCTGTTTGCTT+AGG | 0.469003 | 1_3:+12885694 | Msa0104720:CDS |
| TGCAGCGTGACGGGAATGCC+TGG | 0.473934 | 1_3:+12884023 | Msa0104720:intron |
| AAACTTAGATGGGAATGAAA+AGG | 0.479053 | 1_3:-12879460 | None:intergenic |
| GCTCAAAGTATTCGAATGTC+TGG | 0.479780 | 1_3:+12885006 | Msa0104720:CDS |
| AAGGAGAAAGCGAATTTGAA+AGG | 0.482630 | 1_3:-12879441 | None:intergenic |
| TGTTACTAGAAGCATAGTTC+AGG | 0.483810 | 1_3:-12883709 | None:intergenic |
| TCTGCACATATATATGTTTG+TGG | 0.485140 | 1_3:+12884970 | Msa0104720:CDS |
| TCTCTGAGTTTATGCAGGTC+GGG | 0.486148 | 1_3:-12884055 | None:intergenic |
| AGGATATTATGCAGCGTGAC+GGG | 0.490590 | 1_3:+12884014 | Msa0104720:intron |
| GTTAGAGTGGGATCGTAGAC+AGG | 0.496234 | 1_3:+12885734 | Msa0104720:CDS |
| CATATATATGTGCAGAGTGC+AGG | 0.498763 | 1_3:-12884963 | None:intergenic |
| GGCTCAACGGTGTTAGGGGT+GGG | 0.500757 | 1_3:-12879569 | None:intergenic |
| CCAGCGCCCTGACTTGTCGC+AGG | 0.504978 | 1_3:-12883861 | None:intergenic |
| ATGTAGCTCATGCGAGGTGG+TGG | 0.505348 | 1_3:+12885643 | Msa0104720:CDS |
| GAAACTACAGCAATGGTCAC+TGG | 0.506581 | 1_3:+12885766 | Msa0104720:CDS |
| CAGTGTAGCATTGTTTCCTA+TGG | 0.507446 | 1_3:-12885289 | None:intergenic |
| TGGCTCAACGGTGTTAGGGG+TGG | 0.508596 | 1_3:-12879570 | None:intergenic |
| TGATCAGTATTATAAACTGC+TGG | 0.510064 | 1_3:-12883236 | None:intergenic |
| TTTATACTCCTATCTTGGAA+TGG | 0.510475 | 1_3:-12883143 | None:intergenic |
| AGACTTGCTGCTACTTCCAA+AGG | 0.510611 | 1_3:+12883926 | Msa0104720:CDS |
| AGGAGAAAGCGAATTTGAAA+GGG | 0.512219 | 1_3:-12879440 | None:intergenic |
| ACTGTTCAACTCAGGTGTAA+TGG | 0.513305 | 1_3:+12885308 | Msa0104720:CDS |
| ACCCTGGTCACCACCATTGT+AGG | 0.514384 | 1_3:-12885391 | None:intergenic |
| ATGCACTGGATGAAACCCTT+TGG | 0.516067 | 1_3:-12883942 | None:intergenic |
| GCTTCTCTCTGAGTTTATGC+AGG | 0.516546 | 1_3:-12884060 | None:intergenic |
| AATACTTTGAGCTGCGGTGA+TGG | 0.520044 | 1_3:-12884995 | None:intergenic |
| ATGATTGCTAAATTGCATAT+GGG | 0.521031 | 1_3:+12886041 | Msa0104720:three_prime_UTR |
| TTCTTGAAACATTTCTGGGA+AGG | 0.522014 | 1_3:+12885465 | Msa0104720:CDS |
| TCCAGTTGCAGTCGTAATCT+CGG | 0.522527 | 1_3:-12885590 | None:intergenic |
| TTGACTTGATTCGAAGATGA+GGG | 0.525592 | 1_3:+12879544 | Msa0104720:exon |
| AGCAGAAGGCAGCGTTAGAG+TGG | 0.527478 | 1_3:+12885721 | Msa0104720:CDS |
| TCCTGACCTTTAGCCTTCAA+AGG | 0.531986 | 1_3:-12884118 | None:intergenic |
| AGCTTCCCTGCGACAAGTCA+GGG | 0.533888 | 1_3:+12883855 | Msa0104720:CDS |
| GTGGCTTGGCAGCAGCTGGA+TGG | 0.534926 | 1_3:+12885085 | Msa0104720:CDS |
| GACTTGCTGCTACTTCCAAA+GGG | 0.541842 | 1_3:+12883927 | Msa0104720:CDS |
| CTACTTGTCCAACACTACCT+AGG | 0.544561 | 1_3:+12883789 | Msa0104720:CDS |
| AAGAAAGAGAAAACTTAGAT+GGG | 0.545120 | 1_3:-12879470 | None:intergenic |
| GCCTGAATCCTAGGTAGTGT+TGG | 0.546134 | 1_3:-12883797 | None:intergenic |
| CCTGCGACAAGTCAGGGCGC+TGG | 0.547118 | 1_3:+12883861 | Msa0104720:CDS |
| TGATTATCACAGGAGTGGCT+TGG | 0.547142 | 1_3:+12885071 | Msa0104720:CDS |
| TGGATGACATAAAGGATTGG+TGG | 0.547445 | 1_3:-12885537 | None:intergenic |
| TATTATAAACTGCTGGAGGA+TGG | 0.547827 | 1_3:-12883229 | None:intergenic |
| CTGGAACGTGGACATTCTGC+AGG | 0.550039 | 1_3:+12885608 | Msa0104720:CDS |
| GATCGTAGACAGGCCAAGAA+AGG | 0.550520 | 1_3:+12885744 | Msa0104720:CDS |
| CGATATTTCTGAGTATAAGA+AGG | 0.553853 | 1_3:-12885236 | None:intergenic |
| TTCCTGTCGTTTACATATGT+AGG | 0.555071 | 1_3:-12883497 | None:intergenic |
| AAACAATAAGTGATTATCAC+AGG | 0.557166 | 1_3:+12885061 | Msa0104720:CDS |
| CTAGGTAGTGTTGGACAAGT+AGG | 0.557193 | 1_3:-12883788 | None:intergenic |
| TTGGATCAAGAATGAGGTGG+TGG | 0.562273 | 1_3:-12879370 | None:intergenic |
| ATGGTTTAGTACCTAGATAG+TGG | 0.565355 | 1_3:-12885557 | None:intergenic |
| AAGGACACATATCAGGGTGT+TGG | 0.565940 | 1_3:+12883611 | Msa0104720:CDS |
| GGCCTACATATGTAAACGAC+AGG | 0.567340 | 1_3:+12883495 | Msa0104720:intron |
| GTCACGAAAAGTACATGCAC+TGG | 0.569264 | 1_3:-12883956 | None:intergenic |
| GGTGGATTGGATCAAGAATG+AGG | 0.570011 | 1_3:-12879376 | None:intergenic |
| AGTTGAAATGTGCAATTCGA+TGG | 0.571909 | 1_3:-12885339 | None:intergenic |
| CAGGTCGGGTTCATAAAGCC+AGG | 0.574180 | 1_3:-12884041 | None:intergenic |
| TAATCGGTGACGTGGCTCAA+CGG | 0.574534 | 1_3:-12879582 | None:intergenic |
| AGCTCATGCGAGGTGGTGGA+AGG | 0.575417 | 1_3:+12885647 | Msa0104720:CDS |
| TTTGCTTAGGTCGAAGCAGA+AGG | 0.575458 | 1_3:+12885707 | Msa0104720:CDS |
| ACGTGGCTCAACGGTGTTAG+GGG | 0.578176 | 1_3:-12879573 | None:intergenic |
| TCCTACAATGGTGGTGACCA+GGG | 0.581119 | 1_3:+12885390 | Msa0104720:CDS |
| ATGTCTGAAATATCAGCCAT+AGG | 0.584746 | 1_3:+12885273 | Msa0104720:CDS |
| GGGAAGACTTGTATCCAGAA+TGG | 0.585294 | 1_3:+12883738 | Msa0104720:intron |
| AAACAACCATGACTTGGAGT+TGG | 0.587470 | 1_3:-12879330 | None:intergenic |
| TGGTGGAGACTGGAGAGTGG+TGG | 0.587671 | 1_3:-12879353 | None:intergenic |
| AGGATGGAAAATTGTAAGCA+AGG | 0.589153 | 1_3:-12883213 | None:intergenic |
| ACATATGTAAACGACAGGAA+TGG | 0.596076 | 1_3:+12883500 | Msa0104720:CDS |
| CAGCGCCCTGACTTGTCGCA+GGG | 0.596806 | 1_3:-12883860 | None:intergenic |
| CTACCTAGGATTCAGGCACC+AGG | 0.597753 | 1_3:+12883803 | Msa0104720:CDS |
| TTTGACTTGATTCGAAGATG+AGG | 0.599388 | 1_3:+12879543 | Msa0104720:exon |
| AGGTGGTGGAGACTGGAGAG+TGG | 0.600221 | 1_3:-12879356 | None:intergenic |
| AAGGATATTATGCAGCGTGA+CGG | 0.600793 | 1_3:+12884013 | Msa0104720:intron |
| TAGTGGATGACATAAAGGAT+TGG | 0.601872 | 1_3:-12885540 | None:intergenic |
| TGGTGGAAACAACCATGACT+TGG | 0.602810 | 1_3:-12879336 | None:intergenic |
| AATGAGATTGTATCCTACAA+TGG | 0.606182 | 1_3:+12885378 | Msa0104720:CDS |
| AAATTTCATTTAGATAACCC+TGG | 0.606443 | 1_3:-12885407 | None:intergenic |
| ACCGCTCCAACTCCAAGTCA+TGG | 0.609545 | 1_3:+12879324 | Msa0104720:five_prime_UTR |
| GCAGAAGGCAGCGTTAGAGT+GGG | 0.609692 | 1_3:+12885722 | Msa0104720:CDS |
| ATATATCAAACTCTATATCA+CGG | 0.621311 | 1_3:+12883258 | Msa0104720:CDS |
| ATGAAAGTGAGATTGACCAC+TGG | 0.622446 | 1_3:+12883648 | Msa0104720:CDS |
| AACCAGAAGCATATAACGAG+TGG | 0.623151 | 1_3:+12885148 | Msa0104720:CDS |
| TGACTTGATTCGAAGATGAG+GGG | 0.623649 | 1_3:+12879545 | Msa0104720:exon |
| CTGGTACTAGCTGCTTCCAG+TGG | 0.625456 | 1_3:-12883664 | None:intergenic |
| AAGAAAGGAAACTACAGCAA+TGG | 0.626082 | 1_3:+12885759 | Msa0104720:CDS |
| CATTCGAATACTTTGAGCTG+CGG | 0.628095 | 1_3:-12885001 | None:intergenic |
| ATTTCTGAGTATAAGAAGGT+CGG | 0.628917 | 1_3:-12885232 | None:intergenic |
| TAGAAGCATAGTTCAGGCGA+AGG | 0.629094 | 1_3:-12883703 | None:intergenic |
| AAGGATAAGGACACATATCA+GGG | 0.632162 | 1_3:+12883605 | Msa0104720:CDS |
| ACCATGACTTGGAGTTGGAG+CGG | 0.639507 | 1_3:-12879325 | None:intergenic |
| AATGCTACACTGTTCAACTC+AGG | 0.645973 | 1_3:+12885300 | Msa0104720:CDS |
| GAGAGTATGTTATGGCATTG+GGG | 0.651503 | 1_3:+12885846 | Msa0104720:CDS |
| TAATCTCGGAAACAAAGCCA+TGG | 0.656479 | 1_3:-12885576 | None:intergenic |
| ACATTTCTGGGAAGGCGACG+AGG | 0.659097 | 1_3:+12885473 | Msa0104720:CDS |
| TTACGACTGCAACTGGAACG+TGG | 0.659215 | 1_3:+12885596 | Msa0104720:CDS |
| ACTATCTAGGTACTAAACCA+TGG | 0.660025 | 1_3:+12885559 | Msa0104720:CDS |
| CGAGCAATGTAGCTCATGCG+AGG | 0.661213 | 1_3:+12885637 | Msa0104720:CDS |
| ATAAGTGATTATCACAGGAG+TGG | 0.662338 | 1_3:+12885066 | Msa0104720:CDS |
| TCAGTATTATAAACTGCTGG+AGG | 0.663878 | 1_3:-12883233 | None:intergenic |
| GAAGTTGATAATCGGTGACG+TGG | 0.670744 | 1_3:-12879590 | None:intergenic |
| GCAATGTAGCTCATGCGAGG+TGG | 0.689730 | 1_3:+12885640 | Msa0104720:CDS |
| GTTCAACTCAGGTGTAATGG+TGG | 0.709097 | 1_3:+12885311 | Msa0104720:CDS |
| GAGATTGTATCCTACAATGG+TGG | 0.728088 | 1_3:+12885381 | Msa0104720:CDS |
| GGATTGGATCAAGAATGAGG+TGG | 0.746883 | 1_3:-12879373 | None:intergenic |
| ACAGCAATAAGATCAAGACG+TGG | 0.768801 | 1_3:-12883830 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTAATTTTTTTCTTATT+TGG | + | chr1_3:12879670-12879689 | Msa0104720:intron | 10.0% |
| !!! | TGTTTAATTTTCATTTTTTT+TGG | + | chr1_3:12880510-12880529 | Msa0104720:intron | 10.0% |
| !!! | TTTTCATTTATGTATAAATT+TGG | + | chr1_3:12881916-12881935 | Msa0104720:intron | 10.0% |
| !! | TTAAAAAATTATATTCAATG+CGG | + | chr1_3:12882500-12882519 | Msa0104720:intron | 10.0% |
| !! | TATTTGTATATTTCTCAATT+TGG | + | chr1_3:12879697-12879716 | Msa0104720:intron | 15.0% |
| !!! | TGATTTTCTAAAATTATTAG+TGG | + | chr1_3:12879884-12879903 | Msa0104720:intron | 15.0% |
| !! | TTGAGTGTAAAATTAAATTA+AGG | + | chr1_3:12880260-12880279 | Msa0104720:intron | 15.0% |
| !!! | AAAATTAATTTTGACATCTT+TGG | - | chr1_3:12880351-12880370 | None:intergenic | 15.0% |
| !!! | GTTAATTTGTATTTTGAATT+TGG | + | chr1_3:12880549-12880568 | Msa0104720:intron | 15.0% |
| !! | CAACAATAAACATAAAAATT+GGG | - | chr1_3:12881340-12881359 | None:intergenic | 15.0% |
| !! | TCAACAATAAACATAAAAAT+TGG | - | chr1_3:12881341-12881360 | None:intergenic | 15.0% |
| !! | AATTATGAAACAAAATAACA+TGG | - | chr1_3:12882342-12882361 | None:intergenic | 15.0% |
| !! | TAAAAAATTATATTCAATGC+GGG | + | chr1_3:12882501-12882520 | Msa0104720:intron | 15.0% |
| !! | ATTCAATTATATATTTGAAG+AGG | + | chr1_3:12882744-12882763 | Msa0104720:intron | 15.0% |
| !!! | TATTTTGGTTATTATTATCT+TGG | + | chr1_3:12883187-12883206 | Msa0104720:CDS | 15.0% |
| !!! | ATTTTGGTTATTATTATCTT+GGG | + | chr1_3:12883188-12883207 | Msa0104720:CDS | 15.0% |
| !! | TTATATGGATATTTATTCTT+TGG | + | chr1_3:12883466-12883485 | Msa0104720:intron | 15.0% |
| !! | TATATGGATATTTATTCTTT+GGG | + | chr1_3:12883467-12883486 | Msa0104720:intron | 15.0% |
| !! | AGTCATACTCAAATAAAATT+GGG | - | chr1_3:12879736-12879755 | None:intergenic | 20.0% |
| !! | TTCTGTGTAATTATATATGT+CGG | - | chr1_3:12879859-12879878 | None:intergenic | 20.0% |
| !!! | TTTTGAGTGTAAATTAATTC+TGG | + | chr1_3:12880166-12880185 | Msa0104720:intron | 20.0% |
| !!! | TACAAATTTTTGGTTCTAAA+TGG | + | chr1_3:12880899-12880918 | Msa0104720:intron | 20.0% |
| !! | ATTGTTACTCAACAATAATT+TGG | - | chr1_3:12881138-12881157 | None:intergenic | 20.0% |
| !! | AATAAACATAAAAATTGGGT+AGG | - | chr1_3:12881336-12881355 | None:intergenic | 20.0% |
| !! | ATCTATGTATCAATGAATAT+GGG | - | chr1_3:12881370-12881389 | None:intergenic | 20.0% |
| !! | TATCTATGTATCAATGAATA+TGG | - | chr1_3:12881371-12881390 | None:intergenic | 20.0% |
| !! | AAAAGTTAAAACAACAAATC+CGG | - | chr1_3:12881743-12881762 | None:intergenic | 20.0% |
| !! | AAACTACCATTGATATTTAA+AGG | + | chr1_3:12882374-12882393 | Msa0104720:intron | 20.0% |
| !! | AAAAAATTATATTCAATGCG+GGG | + | chr1_3:12882502-12882521 | Msa0104720:intron | 20.0% |
| !! | AGTATATAAAAAATCAGGTA+TGG | + | chr1_3:12882637-12882656 | Msa0104720:intron | 20.0% |
| !! | GTATATAAAAAATCAGGTAT+GGG | + | chr1_3:12882638-12882657 | Msa0104720:intron | 20.0% |
| !! | TATATAAAAAATCAGGTATG+GGG | + | chr1_3:12882639-12882658 | Msa0104720:intron | 20.0% |
| !! | TCAATTATCCAAGAAAATAA+AGG | + | chr1_3:12882780-12882799 | Msa0104720:intron | 20.0% |
| !! | CAGCATTGTTAATAATAATT+TGG | - | chr1_3:12882883-12882902 | None:intergenic | 20.0% |
| !!! | ACCAAAATAATTTTCCAATT+CGG | - | chr1_3:12883176-12883195 | None:intergenic | 20.0% |
| !! | ATATATCAAACTCTATATCA+CGG | + | chr1_3:12883258-12883277 | Msa0104720:CDS | 20.0% |
| !! | TTTCAAGAACATTAGTTATT+TGG | - | chr1_3:12883580-12883599 | None:intergenic | 20.0% |
| !! | TAATGTTCTTGAAAATTTGA+AGG | + | chr1_3:12883586-12883605 | Msa0104720:CDS | 20.0% |
| !! | TGTTCATTTACATTGAAATA+AGG | - | chr1_3:12884338-12884357 | None:intergenic | 20.0% |
| !! | ATTAATTGAATCTTATTGTC+TGG | + | chr1_3:12884745-12884764 | Msa0104720:intron | 20.0% |
| !!! | ATCTAAATGAAATTTTCACA+TGG | + | chr1_3:12885415-12885434 | Msa0104720:CDS | 20.0% |
| !! | ACTTCTGTATATAAAATCTA+AGG | - | chr1_3:12886166-12886185 | None:intergenic | 20.0% |
| ! | AAGAAAGAGAAAACTTAGAT+GGG | - | chr1_3:12879473-12879492 | None:intergenic | 25.0% |
| !!! | TGAATGAAGAAGTTGATAAT+CGG | - | chr1_3:12879601-12879620 | None:intergenic | 25.0% |
| ! | GAGTCATACTCAAATAAAAT+TGG | - | chr1_3:12879737-12879756 | None:intergenic | 25.0% |
| !! | TCTAAAATTATTAGTGGTGT+CGG | + | chr1_3:12879890-12879909 | Msa0104720:intron | 25.0% |
| ! | TTTCAATTATGCAATACACA+GGG | - | chr1_3:12880011-12880030 | None:intergenic | 25.0% |
| !! | TTTTCAATTATGCAATACAC+AGG | - | chr1_3:12880012-12880031 | None:intergenic | 25.0% |
| ! | GCATAATTGAAAAACTATAG+CGG | + | chr1_3:12880019-12880038 | Msa0104720:intron | 25.0% |
| !! | TATTGTTCTAAGTGTATGTT+TGG | + | chr1_3:12880121-12880140 | Msa0104720:intron | 25.0% |
| ! | AAGTGTATGTTTGGTTAATA+TGG | + | chr1_3:12880130-12880149 | Msa0104720:intron | 25.0% |
| ! | CAAAATCAATTATACTCTAG+AGG | + | chr1_3:12880323-12880342 | Msa0104720:intron | 25.0% |
| !!! | TTAGATATGAGAGCTATTTT+AGG | + | chr1_3:12880433-12880452 | Msa0104720:intron | 25.0% |
| ! | TTTCATAGTTGAAAGTTAGT+TGG | - | chr1_3:12880595-12880614 | None:intergenic | 25.0% |
| !!! | CACAAATTTTTGGTTCTAAT+TGG | + | chr1_3:12880670-12880689 | Msa0104720:intron | 25.0% |
| ! | CCAAATCAATTGATAAAACA+AGG | - | chr1_3:12880754-12880773 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTATCAATTGATT+TGG | + | chr1_3:12880751-12880770 | Msa0104720:intron | 25.0% |
| ! | AATCAATTATCGCAAAAGAA+GGG | + | chr1_3:12880808-12880827 | Msa0104720:intron | 25.0% |
| ! | AAAGCTGTTAATTAGAGTTA+TGG | + | chr1_3:12880947-12880966 | Msa0104720:intron | 25.0% |
| ! | CCAAATCAATTGATAAAACA+AGG | - | chr1_3:12880754-12880773 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTATCAATTGATT+TGG | + | chr1_3:12880751-12880770 | Msa0104720:intron | 25.0% |
| ! | AATCAATTATCCCAAAAGAA+GGG | + | chr1_3:12881037-12881056 | Msa0104720:intron | 25.0% |
| ! | TAGAAGAGTGAGTTTATAAA+TGG | + | chr1_3:12881061-12881080 | Msa0104720:intron | 25.0% |
| ! | AGTGAGTTTATAAATGGATA+TGG | + | chr1_3:12881067-12881086 | Msa0104720:intron | 25.0% |
| ! | GTGAGTTTATAAATGGATAT+GGG | + | chr1_3:12881068-12881087 | Msa0104720:intron | 25.0% |
| ! | GCATTGTTGTCTAATTATTT+AGG | + | chr1_3:12881090-12881109 | Msa0104720:intron | 25.0% |
| !!! | TAGGACTTTGTTTTCTTTTT+TGG | + | chr1_3:12881109-12881128 | Msa0104720:intron | 25.0% |
| ! | TTCCTTTGTATTTCTCAAAT+TGG | + | chr1_3:12881301-12881320 | Msa0104720:intron | 25.0% |
| ! | AACCAATTTGAGAAATACAA+AGG | - | chr1_3:12881306-12881325 | None:intergenic | 25.0% |
| ! | TGAGTGTAGTATTTAAACTT+TGG | + | chr1_3:12881426-12881445 | Msa0104720:intron | 25.0% |
| !!! | TTATCTGTTTTCTTTAGAAC+CGG | + | chr1_3:12881721-12881740 | Msa0104720:intron | 25.0% |
| !! | AACTTTTGTCCAATTTTTTG+TGG | + | chr1_3:12881756-12881775 | Msa0104720:intron | 25.0% |
| !! | ACTTTTGTCCAATTTTTTGT+GGG | + | chr1_3:12881757-12881776 | Msa0104720:intron | 25.0% |
| !!! | CTATTTTAGAAACTTTGAGT+TGG | + | chr1_3:12881810-12881829 | Msa0104720:intron | 25.0% |
| ! | TGCAAATTAACTATAGCATA+AGG | - | chr1_3:12881944-12881963 | None:intergenic | 25.0% |
| !!! | TGCTATAGTTAATTTGCATT+TGG | + | chr1_3:12881946-12881965 | Msa0104720:intron | 25.0% |
| !! | ATTTGGCATTTTGTAATAAG+TGG | + | chr1_3:12881963-12881982 | Msa0104720:intron | 25.0% |
| ! | CATTGAATGAATCTTGAAAT+TGG | + | chr1_3:12882019-12882038 | Msa0104720:intron | 25.0% |
| !! | GCATGGAAAATACAAATTTT+CGG | + | chr1_3:12882060-12882079 | Msa0104720:intron | 25.0% |
| ! | TGTTAAAGTGAGCATATTAT+TGG | + | chr1_3:12882424-12882443 | Msa0104720:intron | 25.0% |
| ! | GGGTAAGTATATAAAAAATC+AGG | + | chr1_3:12882632-12882651 | Msa0104720:intron | 25.0% |
| !! | AATCTCTATGACTCTATTTT+AGG | - | chr1_3:12882708-12882727 | None:intergenic | 25.0% |
| !!! | CTTCTAAACCTTTATTTTCT+TGG | - | chr1_3:12882791-12882810 | None:intergenic | 25.0% |
| ! | TTTAGAAGACTGAGTTTATT+AGG | + | chr1_3:12882803-12882822 | Msa0104720:intron | 25.0% |
| ! | TTAGAAGACTGAGTTTATTA+GGG | + | chr1_3:12882804-12882823 | Msa0104720:intron | 25.0% |
| ! | CATTGTTGTCTTAATCATTT+GGG | + | chr1_3:12882835-12882854 | Msa0104720:intron | 25.0% |
| ! | AATACATATAAGCTAGCTAT+AGG | - | chr1_3:12882930-12882949 | None:intergenic | 25.0% |
| !!! | TTGATTTTTTTCCTCTCTAT+TGG | + | chr1_3:12883044-12883063 | Msa0104720:intron | 25.0% |
| !!! | ATTAGTTTCGTTTCTAAAGT+TGG | + | chr1_3:12883313-12883332 | Msa0104720:intron | 25.0% |
| ! | ATGAAAATCACTCTACTAAT+TGG | - | chr1_3:12883425-12883444 | None:intergenic | 25.0% |
| ! | ACTTCTCTTTGTATCTTATA+TGG | + | chr1_3:12883451-12883470 | Msa0104720:intron | 25.0% |
| !! | CATCTTTTCTTAATATTGAC+TGG | + | chr1_3:12883552-12883571 | Msa0104720:CDS | 25.0% |
| ! | TCTTGAAAATTTGAAGGATA+AGG | + | chr1_3:12883592-12883611 | Msa0104720:CDS | 25.0% |
| !! | AAGTAAAGAGATTTGGAATT+GGG | - | chr1_3:12883991-12884010 | None:intergenic | 25.0% |
| ! | ACATTAAGCAATAAGGTAAT+CGG | - | chr1_3:12884703-12884722 | None:intergenic | 25.0% |
| !! | TTCAACAGAAAATTTTCACT+CGG | + | chr1_3:12884909-12884928 | Msa0104720:intron | 25.0% |
| ! | AAACAATAAGTGATTATCAC+AGG | + | chr1_3:12885061-12885080 | Msa0104720:CDS | 25.0% |
| ! | ATATTTCAGACATCTCAAAA+AGG | - | chr1_3:12885266-12885285 | None:intergenic | 25.0% |
| ! | AAATTTCATTTAGATAACCC+TGG | - | chr1_3:12885410-12885429 | None:intergenic | 25.0% |
| !! | TAAATGAAATTTTCACATGG+TGG | + | chr1_3:12885418-12885437 | Msa0104720:CDS | 25.0% |
| !!! | TAGCAATCATATTTTGTTTC+CGG | - | chr1_3:12886031-12886050 | None:intergenic | 25.0% |
| ! | TATGATTGCTAAATTGCATA+TGG | + | chr1_3:12886040-12886059 | Msa0104720:three_prime_UTR | 25.0% |
| ! | ATGATTGCTAAATTGCATAT+GGG | + | chr1_3:12886041-12886060 | Msa0104720:three_prime_UTR | 25.0% |
| GTGAAAAAATGAAGCGAATA+GGG | - | chr1_3:12879408-12879427 | None:intergenic | 30.0% | |
| AGTGAAAAAATGAAGCGAAT+AGG | - | chr1_3:12879409-12879428 | None:intergenic | 30.0% | |
| AAACTTAGATGGGAATGAAA+AGG | - | chr1_3:12879463-12879482 | None:intergenic | 30.0% | |
| GAAGAAAGAGAAAACTTAGA+TGG | - | chr1_3:12879474-12879493 | None:intergenic | 30.0% | |
| ! | CATTTTGTTCTGTTAGAAAC+TGG | + | chr1_3:12879520-12879539 | Msa0104720:five_prime_UTR | 30.0% |
| GATTATCAACTTCTTCATTC+AGG | + | chr1_3:12879600-12879619 | Msa0104720:CDS | 30.0% | |
| CGAAAATGCAAATCAAATCA+AGG | - | chr1_3:12879644-12879663 | None:intergenic | 30.0% | |
| TCAAGTAGAATCAATTCTAG+AGG | + | chr1_3:12880300-12880319 | Msa0104720:intron | 30.0% | |
| TAAGAAGCTAAACGTATGTT+TGG | - | chr1_3:12880413-12880432 | None:intergenic | 30.0% | |
| CTAACTTTCAACTATGAAAG+AGG | + | chr1_3:12880596-12880615 | Msa0104720:intron | 30.0% | |
| GATTGAATGAATCTTGAGTT+TGG | + | chr1_3:12880625-12880644 | Msa0104720:intron | 30.0% | |
| GAATCAATTATCGCAAAAGA+AGG | + | chr1_3:12880807-12880826 | Msa0104720:intron | 30.0% | |
| GATTGAATGAATCTTGAGTT+TGG | + | chr1_3:12880625-12880644 | Msa0104720:intron | 30.0% | |
| ! | TATTTGCTACGCTTACTATT+CGG | - | chr1_3:12880881-12880900 | None:intergenic | 30.0% |
| ! | GCGTAGCAAATACAAATTTT+TGG | + | chr1_3:12880889-12880908 | Msa0104720:intron | 30.0% |
| !!! | TCTTTTGGGATAATTGATTC+AGG | - | chr1_3:12881036-12881055 | None:intergenic | 30.0% |
| GAATCAATTATCCCAAAAGA+AGG | + | chr1_3:12881036-12881055 | Msa0104720:intron | 30.0% | |
| TAATCATCTATCTAAGGACA+GGG | - | chr1_3:12881170-12881189 | None:intergenic | 30.0% | |
| ! | CAAATCAGGGTTCAAAATTT+TGG | - | chr1_3:12881242-12881261 | None:intergenic | 30.0% |
| !! | TTGAACCCTGATTTGAATTT+TGG | + | chr1_3:12881247-12881266 | Msa0104720:intron | 30.0% |
| ACAGACCAAAATTCAAATCA+GGG | - | chr1_3:12881255-12881274 | None:intergenic | 30.0% | |
| AACAGACCAAAATTCAAATC+AGG | - | chr1_3:12881256-12881275 | None:intergenic | 30.0% | |
| !! | TGATTTGAATTTTGGTCTGT+TGG | + | chr1_3:12881255-12881274 | Msa0104720:intron | 30.0% |
| TAGCTTAACCCACAAAAAAT+TGG | - | chr1_3:12881768-12881787 | None:intergenic | 30.0% | |
| TCAATCTCAAATTGCTACAA+AGG | - | chr1_3:12881852-12881871 | None:intergenic | 30.0% | |
| ACAAAGCTGTTAAATAGAGT+AGG | + | chr1_3:12882108-12882127 | Msa0104720:intron | 30.0% | |
| ! | ATAATTTTCTACATTCGCGA+CGG | - | chr1_3:12882305-12882324 | None:intergenic | 30.0% |
| GTTGCTCCTTTAAATATCAA+TGG | - | chr1_3:12882383-12882402 | None:intergenic | 30.0% | |
| ATCTATTACAACATTGCTCT+TGG | + | chr1_3:12882450-12882469 | Msa0104720:intron | 30.0% | |
| TCTATTACAACATTGCTCTT+GGG | + | chr1_3:12882451-12882470 | Msa0104720:intron | 30.0% | |
| TAGAAGACTGAGTTTATTAG+GGG | + | chr1_3:12882805-12882824 | Msa0104720:intron | 30.0% | |
| GCATTGTTGTCTTAATCATT+TGG | + | chr1_3:12882834-12882853 | Msa0104720:intron | 30.0% | |
| ! | TGGGATTCTGTTTTCTTTTT+TGG | + | chr1_3:12882854-12882873 | Msa0104720:intron | 30.0% |
| !!! | GTTTTTTTGAGATCTTCTCT+TGG | - | chr1_3:12883087-12883106 | None:intergenic | 30.0% |
| GAGAAGATCTCAAAAAAACA+AGG | + | chr1_3:12883088-12883107 | Msa0104720:CDS | 30.0% | |
| TTTATACTCCTATCTTGGAA+TGG | - | chr1_3:12883146-12883165 | None:intergenic | 30.0% | |
| TGCAATTTATACTCCTATCT+TGG | - | chr1_3:12883151-12883170 | None:intergenic | 30.0% | |
| ! | GCCGAATTGGAAAATTATTT+TGG | + | chr1_3:12883172-12883191 | Msa0104720:CDS | 30.0% |
| TGATCAGTATTATAAACTGC+TGG | - | chr1_3:12883239-12883258 | None:intergenic | 30.0% | |
| !! | ATATTTATTCTTTGGGTTGC+AGG | + | chr1_3:12883474-12883493 | Msa0104720:intron | 30.0% |
| ! | CAAGTAAAGAGATTTGGAAT+TGG | - | chr1_3:12883992-12884011 | None:intergenic | 30.0% |
| !! | TGAAAAGTGCTAAAAGAACA+AGG | - | chr1_3:12884185-12884204 | None:intergenic | 30.0% |
| ! | GAGACTTCTATAACCTTTTA+TGG | + | chr1_3:12884261-12884280 | Msa0104720:intron | 30.0% |
| TTTCCTTCAATATTCAGATC+TGG | - | chr1_3:12884393-12884412 | None:intergenic | 30.0% | |
| TTCTCTGACATTAAGCAATA+AGG | - | chr1_3:12884710-12884729 | None:intergenic | 30.0% | |
| TAAGCATAAAAACCTTGTCT+TGG | + | chr1_3:12884774-12884793 | Msa0104720:intron | 30.0% | |
| CATGTATACTGGAAATTCAA+AGG | - | chr1_3:12884848-12884867 | None:intergenic | 30.0% | |
| CTTTGAATTTCCAGTATACA+TGG | + | chr1_3:12884846-12884865 | Msa0104720:intron | 30.0% | |
| ! | GAGTGAAAATTTTCTGTTGA+AGG | - | chr1_3:12884910-12884929 | None:intergenic | 30.0% |
| ! | AGAAAATTTTCACTCGGAAA+GGG | + | chr1_3:12884915-12884934 | Msa0104720:intron | 30.0% |
| TCTGCACATATATATGTTTG+TGG | + | chr1_3:12884970-12884989 | Msa0104720:CDS | 30.0% | |
| TCCATACAATTCAAAGAATC+AGG | + | chr1_3:12885112-12885131 | Msa0104720:CDS | 30.0% | |
| TCCTGATTCTTTGAATTGTA+TGG | - | chr1_3:12885116-12885135 | None:intergenic | 30.0% | |
| ATTTCTGAGTATAAGAAGGT+CGG | - | chr1_3:12885235-12885254 | None:intergenic | 30.0% | |
| ! | CGATATTTCTGAGTATAAGA+AGG | - | chr1_3:12885239-12885258 | None:intergenic | 30.0% |
| TTGCACATTTCAACTACTTA+TGG | + | chr1_3:12885347-12885366 | Msa0104720:CDS | 30.0% | |
| AATGAGATTGTATCCTACAA+TGG | + | chr1_3:12885378-12885397 | Msa0104720:CDS | 30.0% | |
| ! | TTCAAGAAGTTCATGTGTTT+TGG | - | chr1_3:12885453-12885472 | None:intergenic | 30.0% |
| TGAACTTCTTGAAACATTTC+TGG | + | chr1_3:12885460-12885479 | Msa0104720:CDS | 30.0% | |
| GAACTTCTTGAAACATTTCT+GGG | + | chr1_3:12885461-12885480 | Msa0104720:CDS | 30.0% | |
| !! | CTTTGAGGATTTTTGTTTCT+GGG | + | chr1_3:12885824-12885843 | Msa0104720:CDS | 30.0% |
| ! | TGAGTTTTACTTCTCATACT+TGG | + | chr1_3:12885948-12885967 | Msa0104720:exon | 30.0% |
| !! | TCATATTTTGTTTCCGGTAT+AGG | - | chr1_3:12886025-12886044 | None:intergenic | 30.0% |
| !!! | AATAGGGTTTTAAGGTGGAT+TGG | - | chr1_3:12879392-12879411 | None:intergenic | 35.0% |
| ! | ATGAAGCGAATAGGGTTTTA+AGG | - | chr1_3:12879400-12879419 | None:intergenic | 35.0% |
| AGGAGAAAGCGAATTTGAAA+GGG | - | chr1_3:12879443-12879462 | None:intergenic | 35.0% | |
| AAGGAGAAAGCGAATTTGAA+AGG | - | chr1_3:12879444-12879463 | None:intergenic | 35.0% | |
| !! | TTTGACTTGATTCGAAGATG+AGG | + | chr1_3:12879543-12879562 | Msa0104720:exon | 35.0% |
| ! | TTGACTTGATTCGAAGATGA+GGG | + | chr1_3:12879544-12879563 | Msa0104720:exon | 35.0% |
| TCTGGTTAAAATTGAGCTGA+AGG | + | chr1_3:12880184-12880203 | Msa0104720:intron | 35.0% | |
| CTGGTTAAAATTGAGCTGAA+GGG | + | chr1_3:12880185-12880204 | Msa0104720:intron | 35.0% | |
| AAGGGAAAGTGATTTATGTC+TGG | + | chr1_3:12880203-12880222 | Msa0104720:intron | 35.0% | |
| !! | TTACACCTCTAGAATCAGTT+TGG | + | chr1_3:12880369-12880388 | Msa0104720:intron | 35.0% |
| !! | ATGTTTGGTTCCACTTTTAG+AGG | - | chr1_3:12880398-12880417 | None:intergenic | 35.0% |
| CTTTCAACTATGAAAGAGGT+TGG | + | chr1_3:12880600-12880619 | Msa0104720:intron | 35.0% | |
| ! | TGTTTGCTACGCTTACTATT+CGG | - | chr1_3:12880652-12880671 | None:intergenic | 35.0% |
| ! | GCGTAGCAAACACAAATTTT+TGG | + | chr1_3:12880660-12880679 | Msa0104720:intron | 35.0% |
| !!! | TTTTGGTTCTAATTGGTGCT+AGG | + | chr1_3:12880677-12880696 | Msa0104720:intron | 35.0% |
| AATTATCGCAAAAGAAGGGT+TGG | + | chr1_3:12880812-12880831 | Msa0104720:intron | 35.0% | |
| !!! | TTTTGGTTCTAAATGGTGCT+AGG | + | chr1_3:12880906-12880925 | Msa0104720:intron | 35.0% |
| ! | ACTCTTCTAACCCTTCTTTT+GGG | - | chr1_3:12881050-12881069 | None:intergenic | 35.0% |
| CTAATCATCTATCTAAGGAC+AGG | - | chr1_3:12881171-12881190 | None:intergenic | 35.0% | |
| ACCTGAATGAAGTTGACAAT+CGG | - | chr1_3:12881202-12881221 | None:intergenic | 35.0% | |
| ! | GGTTTAATCTTTAGCTTAGC+TGG | + | chr1_3:12881276-12881295 | Msa0104720:intron | 35.0% |
| TACCACAGTTACTATGTTGT+CGG | + | chr1_3:12881488-12881507 | Msa0104720:intron | 35.0% | |
| CTAAATTAGCCCACTCAAAT+TGG | + | chr1_3:12881592-12881611 | Msa0104720:intron | 35.0% | |
| TCTTTGATGCCAATTTGAGT+GGG | - | chr1_3:12881604-12881623 | None:intergenic | 35.0% | |
| ACAACAATACAAACCCACTT+GGG | - | chr1_3:12881693-12881712 | None:intergenic | 35.0% | |
| AAAGAAAGCAAGACTGACAA+TGG | - | chr1_3:12881890-12881909 | None:intergenic | 35.0% | |
| ! | CGTCAAATTGGGTTTGATTT+GGG | - | chr1_3:12882167-12882186 | None:intergenic | 35.0% |
| CCAAATCAAACCCAATTTGA+CGG | + | chr1_3:12882165-12882184 | Msa0104720:intron | 35.0% | |
| CAAATCAAACCCAATTTGAC+GGG | + | chr1_3:12882166-12882185 | Msa0104720:intron | 35.0% | |
| ATACCCAACCCAATCAAAAA+GGG | - | chr1_3:12882197-12882216 | None:intergenic | 35.0% | |
| ! | TTTTCCCCGATTTCAAAACA+CGG | + | chr1_3:12882226-12882245 | Msa0104720:intron | 35.0% |
| !!! | TCATACCCGTGTTTTGAAAT+CGG | - | chr1_3:12882235-12882254 | None:intergenic | 35.0% |
| ! | TAATTTTCTACATTCGCGAC+GGG | - | chr1_3:12882304-12882323 | None:intergenic | 35.0% |
| AAGGAGCAACTAAATCATTC+AGG | + | chr1_3:12882393-12882412 | Msa0104720:intron | 35.0% | |
| CTATTACAACATTGCTCTTG+GGG | + | chr1_3:12882452-12882471 | Msa0104720:intron | 35.0% | |
| AATTATATTCAATGCGGGGA+TGG | + | chr1_3:12882506-12882525 | Msa0104720:intron | 35.0% | |
| ATTATATTCAATGCGGGGAT+GGG | + | chr1_3:12882507-12882526 | Msa0104720:intron | 35.0% | |
| TAAAAAATCAGGTATGGGGA+CGG | + | chr1_3:12882643-12882662 | Msa0104720:intron | 35.0% | |
| !! | TCTATTTTAGGCATGGCAAT+GGG | - | chr1_3:12882696-12882715 | None:intergenic | 35.0% |
| !! | CTATGACTCTATTTTAGGCA+TGG | - | chr1_3:12882703-12882722 | None:intergenic | 35.0% |
| TATCTATGAGAAAGTCCAAG+CGG | - | chr1_3:12883017-12883036 | None:intergenic | 35.0% | |
| CACATATTCCATTCCAAGAT+AGG | + | chr1_3:12883135-12883154 | Msa0104720:CDS | 35.0% | |
| GTATAAATTGCAAGCCGAAT+TGG | + | chr1_3:12883159-12883178 | Msa0104720:CDS | 35.0% | |
| AGGATGGAAAATTGTAAGCA+AGG | - | chr1_3:12883216-12883235 | None:intergenic | 35.0% | |
| TATTATAAACTGCTGGAGGA+TGG | - | chr1_3:12883232-12883251 | None:intergenic | 35.0% | |
| TCAGTATTATAAACTGCTGG+AGG | - | chr1_3:12883236-12883255 | None:intergenic | 35.0% | |
| CACGGTATACCTAAATTTGA+TGG | + | chr1_3:12883276-12883295 | Msa0104720:intron | 35.0% | |
| ! | TTCCTGTCGTTTACATATGT+AGG | - | chr1_3:12883500-12883519 | None:intergenic | 35.0% |
| ACATATGTAAACGACAGGAA+TGG | + | chr1_3:12883500-12883519 | Msa0104720:CDS | 35.0% | |
| AAGGATAAGGACACATATCA+GGG | + | chr1_3:12883605-12883624 | Msa0104720:CDS | 35.0% | |
| ! | TGTTACTAGAAGCATAGTTC+AGG | - | chr1_3:12883712-12883731 | None:intergenic | 35.0% |
| ATGCTTCTAGTAACATCACT+TGG | + | chr1_3:12883717-12883736 | Msa0104720:intron | 35.0% | |
| TGCTTCTAGTAACATCACTT+GGG | + | chr1_3:12883718-12883737 | Msa0104720:intron | 35.0% | |
| TCTTCTTCATCTATCCATTC+TGG | - | chr1_3:12883755-12883774 | None:intergenic | 35.0% | |
| TCCAAATCTCTTTACTTGCA+AGG | + | chr1_3:12883994-12884013 | Msa0104720:intron | 35.0% | |
| TCCTTGCAAGTAAAGAGATT+TGG | - | chr1_3:12883998-12884017 | None:intergenic | 35.0% | |
| GATAGTTCACATGAACCAAT+AGG | - | chr1_3:12884094-12884113 | None:intergenic | 35.0% | |
| TGAACTATCAGTTCCTTTGA+AGG | + | chr1_3:12884105-12884124 | Msa0104720:CDS | 35.0% | |
| !! | TCAAGCATAGTTCTGAATAC+CGG | - | chr1_3:12884309-12884328 | None:intergenic | 35.0% |
| AACACCATAGATACTAGTCA+AGG | + | chr1_3:12884354-12884373 | Msa0104720:intron | 35.0% | |
| GTACCAGATCTGAATATTGA+AGG | + | chr1_3:12884387-12884406 | Msa0104720:intron | 35.0% | |
| CTTTCTTCAACATTCAGATC+TGG | - | chr1_3:12884471-12884490 | None:intergenic | 35.0% | |
| CAGATCTGAATGTTGAAGAA+AGG | + | chr1_3:12884469-12884488 | Msa0104720:intron | 35.0% | |
| ! | CAATGATTGTTTTCCCAACT+CGG | + | chr1_3:12884501-12884520 | Msa0104720:intron | 35.0% |
| TCGTATTCATTCAAGAGATC+AGG | + | chr1_3:12884566-12884585 | Msa0104720:intron | 35.0% | |
| CTAGTTAACTCCATGTATAC+TGG | - | chr1_3:12884859-12884878 | None:intergenic | 35.0% | |
| ! | CAGAAAATTTTCACTCGGAA+AGG | + | chr1_3:12884914-12884933 | Msa0104720:intron | 35.0% |
| ATAAGTGATTATCACAGGAG+TGG | + | chr1_3:12885066-12885085 | Msa0104720:CDS | 35.0% | |
| ATTACAGCAAATTTCGTCTC+TGG | + | chr1_3:12885172-12885191 | Msa0104720:CDS | 35.0% | |
| ! | ATGTCTGAAATATCAGCCAT+AGG | + | chr1_3:12885273-12885292 | Msa0104720:CDS | 35.0% |
| AGTTGAAATGTGCAATTCGA+TGG | - | chr1_3:12885342-12885361 | None:intergenic | 35.0% | |
| ! | AAATTTTCACATGGTGGCAT+CGG | + | chr1_3:12885424-12885443 | Msa0104720:CDS | 35.0% |
| ! | TTCTTGAAACATTTCTGGGA+AGG | + | chr1_3:12885465-12885484 | Msa0104720:CDS | 35.0% |
| ! | TAGTGGATGACATAAAGGAT+TGG | - | chr1_3:12885543-12885562 | None:intergenic | 35.0% |
| !! | CTAGATAGTGGATGACATAA+AGG | - | chr1_3:12885548-12885567 | None:intergenic | 35.0% |
| CTTTATGTCATCCACTATCT+AGG | + | chr1_3:12885546-12885565 | Msa0104720:CDS | 35.0% | |
| ATGGTTTAGTACCTAGATAG+TGG | - | chr1_3:12885560-12885579 | None:intergenic | 35.0% | |
| ACTATCTAGGTACTAAACCA+TGG | + | chr1_3:12885559-12885578 | Msa0104720:CDS | 35.0% | |
| ATTGCTGTAGTTTCCTTTCT+TGG | - | chr1_3:12885760-12885779 | None:intergenic | 35.0% | |
| AAGAAAGGAAACTACAGCAA+TGG | + | chr1_3:12885759-12885778 | Msa0104720:CDS | 35.0% | |
| !!! | GCTTTGAGGATTTTTGTTTC+TGG | + | chr1_3:12885823-12885842 | Msa0104720:CDS | 35.0% |
| ! | AAACAACCATGACTTGGAGT+TGG | - | chr1_3:12879333-12879352 | None:intergenic | 40.0% |
| !!! | AAGCGAATAGGGTTTTAAGG+TGG | - | chr1_3:12879397-12879416 | None:intergenic | 40.0% |
| ! | TGACTTGATTCGAAGATGAG+GGG | + | chr1_3:12879545-12879564 | Msa0104720:exon | 40.0% |
| !! | AAAGAGTGTCCGTGTTTCAT+AGG | - | chr1_3:12879809-12879828 | None:intergenic | 40.0% |
| TATGAAACACGGACACTCTT+TGG | + | chr1_3:12879808-12879827 | Msa0104720:intron | 40.0% | |
| ACACTAGGTTGTAACAAGCA+TGG | + | chr1_3:12879957-12879976 | Msa0104720:intron | 40.0% | |
| !! | TATAGCGGTTACTCTGAAGT+TGG | + | chr1_3:12880034-12880053 | Msa0104720:intron | 40.0% |
| ! | AGTTTGGTCTCCTCTAAAAG+TGG | + | chr1_3:12880385-12880404 | Msa0104720:intron | 40.0% |
| TCAACTATGAAAGAGGTTGG+TGG | + | chr1_3:12880603-12880622 | Msa0104720:intron | 40.0% | |
| ! | CACTCTTCTAACCCTTCTTT+TGG | - | chr1_3:12881051-12881070 | None:intergenic | 40.0% |
| CGTGGCTAATCATCTATCTA+AGG | - | chr1_3:12881176-12881195 | None:intergenic | 40.0% | |
| ACCGATTGTCAACTTCATTC+AGG | + | chr1_3:12881198-12881217 | Msa0104720:intron | 40.0% | |
| ACTACACTCATTGCACTTTC+AGG | - | chr1_3:12881416-12881435 | None:intergenic | 40.0% | |
| ATCCGACAACATAGTAACTG+TGG | - | chr1_3:12881493-12881512 | None:intergenic | 40.0% | |
| CTCTTTGATGCCAATTTGAG+TGG | - | chr1_3:12881605-12881624 | None:intergenic | 40.0% | |
| CACAACAATACAAACCCACT+TGG | - | chr1_3:12881694-12881713 | None:intergenic | 40.0% | |
| CAGAATAGTACGAGTAAGCA+TGG | + | chr1_3:12882043-12882062 | Msa0104720:intron | 40.0% | |
| GCTGTTAAATAGAGTAGGCA+TGG | + | chr1_3:12882113-12882132 | Msa0104720:intron | 40.0% | |
| !! | AAATTGGGTTTGATTTGGGC+GGG | - | chr1_3:12882163-12882182 | None:intergenic | 40.0% |
| !! | CAAATTGGGTTTGATTTGGG+CGG | - | chr1_3:12882164-12882183 | None:intergenic | 40.0% |
| CCGTCAAATTGGGTTTGATT+TGG | - | chr1_3:12882168-12882187 | None:intergenic | 40.0% | |
| !! | GGGTTTTCCCCTTTTTGATT+GGG | + | chr1_3:12882186-12882205 | Msa0104720:intron | 40.0% |
| !! | TTTCCCCTTTTTGATTGGGT+TGG | + | chr1_3:12882190-12882209 | Msa0104720:intron | 40.0% |
| !! | TTCCCCTTTTTGATTGGGTT+GGG | + | chr1_3:12882191-12882210 | Msa0104720:intron | 40.0% |
| TACCCAACCCAATCAAAAAG+GGG | - | chr1_3:12882196-12882215 | None:intergenic | 40.0% | |
| CATACCCAACCCAATCAAAA+AGG | - | chr1_3:12882198-12882217 | None:intergenic | 40.0% | |
| !!! | ATTGGGTTGGGTATGAGTTT+TGG | + | chr1_3:12882203-12882222 | Msa0104720:intron | 40.0% |
| TTTCCCCGATTTCAAAACAC+GGG | + | chr1_3:12882227-12882246 | Msa0104720:intron | 40.0% | |
| !!! | ATACCCGTGTTTTGAAATCG+GGG | - | chr1_3:12882233-12882252 | None:intergenic | 40.0% |
| !!! | CATACCCGTGTTTTGAAATC+GGG | - | chr1_3:12882234-12882253 | None:intergenic | 40.0% |
| TTCAAAACACGGGTATGAGA+CGG | + | chr1_3:12882237-12882256 | Msa0104720:intron | 40.0% | |
| TTATATTCAATGCGGGGATG+GGG | + | chr1_3:12882508-12882527 | Msa0104720:intron | 40.0% | |
| ! | ATTTTCATCCCCGTTGAGTA+TGG | + | chr1_3:12882577-12882596 | Msa0104720:intron | 40.0% |
| ! | TTTTCATCCCCGTTGAGTAT+GGG | + | chr1_3:12882578-12882597 | Msa0104720:intron | 40.0% |
| GTAGGGTAACTGTTGAGTAT+GGG | + | chr1_3:12882600-12882619 | Msa0104720:intron | 40.0% | |
| GTAACTGTTGAGTATGGGTA+GGG | + | chr1_3:12882605-12882624 | Msa0104720:intron | 40.0% | |
| AAAAAATCAGGTATGGGGAC+GGG | + | chr1_3:12882644-12882663 | Msa0104720:intron | 40.0% | |
| !! | CTATTTTAGGCATGGCAATG+GGG | - | chr1_3:12882695-12882714 | None:intergenic | 40.0% |
| !! | CTCTATTTTAGGCATGGCAA+TGG | - | chr1_3:12882697-12882716 | None:intergenic | 40.0% |
| ACTGAGTTTATTAGGGGACA+TGG | + | chr1_3:12882811-12882830 | Msa0104720:intron | 40.0% | |
| CTGAGTTTATTAGGGGACAT+GGG | + | chr1_3:12882812-12882831 | Msa0104720:intron | 40.0% | |
| TAGCTATAGGCATCTATGCA+AGG | - | chr1_3:12882917-12882936 | None:intergenic | 40.0% | |
| GAAGGATAAGGACACATATC+AGG | + | chr1_3:12883604-12883623 | Msa0104720:CDS | 40.0% | |
| ATGAAAGTGAGATTGACCAC+TGG | + | chr1_3:12883648-12883667 | Msa0104720:CDS | 40.0% | |
| ACAGCAATAAGATCAAGACG+TGG | - | chr1_3:12883833-12883852 | None:intergenic | 40.0% | |
| AAGGATATTATGCAGCGTGA+CGG | + | chr1_3:12884013-12884032 | Msa0104720:intron | 40.0% | |
| ! | TCAGTTCCTTTGAAGGCTAA+AGG | + | chr1_3:12884112-12884131 | Msa0104720:CDS | 40.0% |
| ! | TGCATTTTTCCGCAATGTCA+AGG | - | chr1_3:12884215-12884234 | None:intergenic | 40.0% |
| GACACCTTGACTAGTATCTA+TGG | - | chr1_3:12884361-12884380 | None:intergenic | 40.0% | |
| ATTAGCAACATCTCCGAGTT+GGG | - | chr1_3:12884517-12884536 | None:intergenic | 40.0% | |
| AATTAGCAACATCTCCGAGT+TGG | - | chr1_3:12884518-12884537 | None:intergenic | 40.0% | |
| AACTCGGAGATGTTGCTAAT+TGG | + | chr1_3:12884517-12884536 | Msa0104720:intron | 40.0% | |
| ACTCGGAGATGTTGCTAATT+GGG | + | chr1_3:12884518-12884537 | Msa0104720:intron | 40.0% | |
| ATTGGGAAAATGACCAGTGT+AGG | + | chr1_3:12884535-12884554 | Msa0104720:intron | 40.0% | |
| TTGGGAAAATGACCAGTGTA+GGG | + | chr1_3:12884536-12884555 | Msa0104720:intron | 40.0% | |
| TACGAATTAATGCCCTACAC+TGG | - | chr1_3:12884551-12884570 | None:intergenic | 40.0% | |
| ! | AAAGAAACGTGTGCGGTTTT+AGG | - | chr1_3:12884631-12884650 | None:intergenic | 40.0% |
| ! | AACCGCACACGTTTCTTTTT+CGG | + | chr1_3:12884633-12884652 | Msa0104720:intron | 40.0% |
| AACCGAAAAAGAAACGTGTG+CGG | - | chr1_3:12884638-12884657 | None:intergenic | 40.0% | |
| TTATGAAACGCACCAAGACA+AGG | - | chr1_3:12884789-12884808 | None:intergenic | 40.0% | |
| ! | TTGTCTTGGTGCGTTTCATA+AGG | + | chr1_3:12884788-12884807 | Msa0104720:intron | 40.0% |
| TGCGTTTCATAAGGCCAATA+TGG | + | chr1_3:12884797-12884816 | Msa0104720:intron | 40.0% | |
| TACGCTTTCAAGAGCCATAT+TGG | - | chr1_3:12884814-12884833 | None:intergenic | 40.0% | |
| GGATTGTTGCATAAGCTTCT+CGG | - | chr1_3:12884945-12884964 | None:intergenic | 40.0% | |
| CATATATATGTGCAGAGTGC+AGG | - | chr1_3:12884966-12884985 | None:intergenic | 40.0% | |
| CATTCGAATACTTTGAGCTG+CGG | - | chr1_3:12885004-12885023 | None:intergenic | 40.0% | |
| ! | GCTCAAAGTATTCGAATGTC+TGG | + | chr1_3:12885006-12885025 | Msa0104720:CDS | 40.0% |
| !!! | TATGCTTCTGGTTCTGCTTT+TGG | - | chr1_3:12885141-12885160 | None:intergenic | 40.0% |
| ! | AACCAGAAGCATATAACGAG+TGG | + | chr1_3:12885148-12885167 | Msa0104720:CDS | 40.0% |
| TTCCACTCGTTATATGCTTC+TGG | - | chr1_3:12885153-12885172 | None:intergenic | 40.0% | |
| CAGTGTAGCATTGTTTCCTA+TGG | - | chr1_3:12885292-12885311 | None:intergenic | 40.0% | |
| AATGCTACACTGTTCAACTC+AGG | + | chr1_3:12885300-12885319 | Msa0104720:CDS | 40.0% | |
| ACTGTTCAACTCAGGTGTAA+TGG | + | chr1_3:12885308-12885327 | Msa0104720:CDS | 40.0% | |
| GAGATTGTATCCTACAATGG+TGG | + | chr1_3:12885381-12885400 | Msa0104720:CDS | 40.0% | |
| TGGATGACATAAAGGATTGG+TGG | - | chr1_3:12885540-12885559 | None:intergenic | 40.0% | |
| TAATCTCGGAAACAAAGCCA+TGG | - | chr1_3:12885579-12885598 | None:intergenic | 40.0% | |
| ! | CAGAACTTCTGCAAGTTTTC+TGG | - | chr1_3:12885687-12885706 | None:intergenic | 40.0% |
| TGCAGAAGTTCTGTTTGCTT+AGG | + | chr1_3:12885694-12885713 | Msa0104720:CDS | 40.0% | |
| ! | TCAAAGCACGTTTTCAAACG+CGG | - | chr1_3:12885810-12885829 | None:intergenic | 40.0% |
| ! | GTTTCTGGGAGAGTATGTTA+TGG | + | chr1_3:12885838-12885857 | Msa0104720:CDS | 40.0% |
| ! | GGAGAGTATGTTATGGCATT+GGG | + | chr1_3:12885845-12885864 | Msa0104720:CDS | 40.0% |
| ! | GAGAGTATGTTATGGCATTG+GGG | + | chr1_3:12885846-12885865 | Msa0104720:CDS | 40.0% |
| !!! | GATTTAGTTTTGACAGCAGC+AGG | - | chr1_3:12885915-12885934 | None:intergenic | 40.0% |
| GACGAGCTGCTACATAATAT+TGG | - | chr1_3:12886067-12886086 | None:intergenic | 40.0% | |
| TGGTGGAAACAACCATGACT+TGG | - | chr1_3:12879339-12879358 | None:intergenic | 45.0% | |
| TTGGATCAAGAATGAGGTGG+TGG | - | chr1_3:12879373-12879392 | None:intergenic | 45.0% | |
| GGATTGGATCAAGAATGAGG+TGG | - | chr1_3:12879376-12879395 | None:intergenic | 45.0% | |
| !! | GGTGGATTGGATCAAGAATG+AGG | - | chr1_3:12879379-12879398 | None:intergenic | 45.0% |
| !! | GAAGTTGATAATCGGTGACG+TGG | - | chr1_3:12879593-12879612 | None:intergenic | 45.0% |
| ! | ACGGACACTCTTTGGATTAG+AGG | + | chr1_3:12879816-12879835 | Msa0104720:intron | 45.0% |
| ! | GGAGACCAAACTGATTCTAG+AGG | - | chr1_3:12880377-12880396 | None:intergenic | 45.0% |
| GAAGGGTTGGAACTTAGAAG+AGG | + | chr1_3:12880825-12880844 | Msa0104720:intron | 45.0% | |
| GGTTGGAACTTAGAAGAGGT+TGG | + | chr1_3:12880829-12880848 | Msa0104720:intron | 45.0% | |
| TGGAACTTAGAAGAGGTTGG+TGG | + | chr1_3:12880832-12880851 | Msa0104720:intron | 45.0% | |
| CAATACAAACCCACTTGGGT+TGG | - | chr1_3:12881689-12881708 | None:intergenic | 45.0% | |
| AGGGGAAAACCCGTCAAATT+GGG | - | chr1_3:12882178-12882197 | None:intergenic | 45.0% | |
| AAGGGGAAAACCCGTCAAAT+TGG | - | chr1_3:12882179-12882198 | None:intergenic | 45.0% | |
| ! | CGGGTTTTCCCCTTTTTGAT+TGG | + | chr1_3:12882185-12882204 | Msa0104720:intron | 45.0% |
| TCAAAACACGGGTATGAGAC+GGG | + | chr1_3:12882238-12882257 | Msa0104720:intron | 45.0% | |
| GAGACGGGTAACAGGTATAT+AGG | + | chr1_3:12882253-12882272 | Msa0104720:intron | 45.0% | |
| TTTGAGTATGGGTTCAGGGT+GGG | - | chr1_3:12882281-12882300 | None:intergenic | 45.0% | |
| TTACCCTACCCATACTCAAC+GGG | - | chr1_3:12882589-12882608 | None:intergenic | 45.0% | |
| GTTACCCTACCCATACTCAA+CGG | - | chr1_3:12882590-12882609 | None:intergenic | 45.0% | |
| GGTAGGGTAACTGTTGAGTA+TGG | + | chr1_3:12882599-12882618 | Msa0104720:intron | 45.0% | |
| GGTAACTGTTGAGTATGGGT+AGG | + | chr1_3:12882604-12882623 | Msa0104720:intron | 45.0% | |
| GTTGAGTATGGGTAGGGTAA+CGG | + | chr1_3:12882589-12882608 | Msa0104720:intron | 45.0% | |
| TTGAGTATGGGTAGGGTAAC+GGG | + | chr1_3:12882590-12882609 | Msa0104720:intron | 45.0% | |
| AAAAATCAGGTATGGGGACG+GGG | + | chr1_3:12882645-12882664 | Msa0104720:intron | 45.0% | |
| TAGGCATCTATGCAAGGACA+AGG | - | chr1_3:12882911-12882930 | None:intergenic | 45.0% | |
| CTTCACTGCATCCAATAGAG+AGG | - | chr1_3:12883058-12883077 | None:intergenic | 45.0% | |
| GCGCGAATCATGGAAAATAG+CGG | - | chr1_3:12883371-12883390 | None:intergenic | 45.0% | |
| GTTGTCAATTGCGCGAATCA+TGG | - | chr1_3:12883381-12883400 | None:intergenic | 45.0% | |
| GGCCTACATATGTAAACGAC+AGG | + | chr1_3:12883495-12883514 | Msa0104720:intron | 45.0% | |
| AAGGACACATATCAGGGTGT+TGG | + | chr1_3:12883611-12883630 | Msa0104720:CDS | 45.0% | |
| ! | TAGAAGCATAGTTCAGGCGA+AGG | - | chr1_3:12883706-12883725 | None:intergenic | 45.0% |
| GGGAAGACTTGTATCCAGAA+TGG | + | chr1_3:12883738-12883757 | Msa0104720:intron | 45.0% | |
| ! | CTAGGTAGTGTTGGACAAGT+AGG | - | chr1_3:12883791-12883810 | None:intergenic | 45.0% |
| CTACTTGTCCAACACTACCT+AGG | + | chr1_3:12883789-12883808 | Msa0104720:CDS | 45.0% | |
| TCCAACACTACCTAGGATTC+AGG | + | chr1_3:12883796-12883815 | Msa0104720:CDS | 45.0% | |
| ! | AGATCAAGACGTGGTTTTCC+TGG | - | chr1_3:12883824-12883843 | None:intergenic | 45.0% |
| !! | AGACTTGCTGCTACTTCCAA+AGG | + | chr1_3:12883926-12883945 | Msa0104720:CDS | 45.0% |
| !! | GACTTGCTGCTACTTCCAAA+GGG | + | chr1_3:12883927-12883946 | Msa0104720:CDS | 45.0% |
| ATGCACTGGATGAAACCCTT+TGG | - | chr1_3:12883945-12883964 | None:intergenic | 45.0% | |
| ! | GTCACGAAAAGTACATGCAC+TGG | - | chr1_3:12883959-12883978 | None:intergenic | 45.0% |
| AGGATATTATGCAGCGTGAC+GGG | + | chr1_3:12884014-12884033 | Msa0104720:intron | 45.0% | |
| TCTCTGAGTTTATGCAGGTC+GGG | - | chr1_3:12884058-12884077 | None:intergenic | 45.0% | |
| CTCTCTGAGTTTATGCAGGT+CGG | - | chr1_3:12884059-12884078 | None:intergenic | 45.0% | |
| GCTTCTCTCTGAGTTTATGC+AGG | - | chr1_3:12884063-12884082 | None:intergenic | 45.0% | |
| GAGAAGCTGCAGTTACCTAT+TGG | + | chr1_3:12884076-12884095 | Msa0104720:CDS | 45.0% | |
| ! | TCCTTTGAAGGCTAAAGGTC+AGG | + | chr1_3:12884117-12884136 | Msa0104720:intron | 45.0% |
| ! | TCCTGACCTTTAGCCTTCAA+AGG | - | chr1_3:12884121-12884140 | None:intergenic | 45.0% |
| CAATGCGAACCTTGACATTG+CGG | + | chr1_3:12884203-12884222 | Msa0104720:intron | 45.0% | |
| CAATGCAATTGCAGCTGCAT+CGG | - | chr1_3:12884239-12884258 | None:intergenic | 45.0% | |
| ! | GATCTGGTACTTAGCATCGA+TGG | - | chr1_3:12884455-12884474 | None:intergenic | 45.0% |
| CGGTTAGTAGTTAGCGATGT+GGG | - | chr1_3:12884683-12884702 | None:intergenic | 45.0% | |
| TCGGTTAGTAGTTAGCGATG+TGG | - | chr1_3:12884684-12884703 | None:intergenic | 45.0% | |
| AATACTTTGAGCTGCGGTGA+TGG | - | chr1_3:12884998-12885017 | None:intergenic | 45.0% | |
| TGATTATCACAGGAGTGGCT+TGG | + | chr1_3:12885071-12885090 | Msa0104720:CDS | 45.0% | |
| GTTCAACTCAGGTGTAATGG+TGG | + | chr1_3:12885311-12885330 | Msa0104720:CDS | 45.0% | |
| TCCAGTTGCAGTCGTAATCT+CGG | - | chr1_3:12885593-12885612 | None:intergenic | 45.0% | |
| !! | CTTCTGCAAGTTTTCTGGCA+TGG | - | chr1_3:12885682-12885701 | None:intergenic | 45.0% |
| TTTGCTTAGGTCGAAGCAGA+AGG | + | chr1_3:12885707-12885726 | Msa0104720:CDS | 45.0% | |
| GAAACTACAGCAATGGTCAC+TGG | + | chr1_3:12885766-12885785 | Msa0104720:CDS | 45.0% | |
| ! | CAAAGCACGTTTTCAAACGC+GGG | - | chr1_3:12885809-12885828 | None:intergenic | 45.0% |
| GCGTTTGAAAACGTGCTTTG+AGG | + | chr1_3:12885809-12885828 | Msa0104720:CDS | 45.0% | |
| ! | GGGAGAGTATGTTATGGCAT+TGG | + | chr1_3:12885844-12885863 | Msa0104720:CDS | 45.0% |
| !!! | TTAGTTTTGACAGCAGCAGG+TGG | - | chr1_3:12885912-12885931 | None:intergenic | 45.0% |
| TTCTCTCGTTCGTCCTATAC+CGG | + | chr1_3:12886009-12886028 | Msa0104720:three_prime_UTR | 45.0% | |
| !!! | TTTTTATTTTTTAAGAATTT+GGG | - | chr1_3:12884601-12884620 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTTAAGAATT+TGG | - | chr1_3:12884602-12884621 | None:intergenic | 5.0% |
| ! | ACCATGACTTGGAGTTGGAG+CGG | - | chr1_3:12879328-12879347 | None:intergenic | 50.0% |
| !! | AAGAATGAGGTGGTGGAGAC+TGG | - | chr1_3:12879366-12879385 | None:intergenic | 50.0% |
| TAATCGGTGACGTGGCTCAA+CGG | - | chr1_3:12879585-12879604 | None:intergenic | 50.0% | |
| TTCATTGGAGCGGACACACT+AGG | + | chr1_3:12879942-12879961 | Msa0104720:intron | 50.0% | |
| GAAGTTGACAATCGGTGACG+TGG | - | chr1_3:12881194-12881213 | None:intergenic | 50.0% | |
| GAATCGAACCTGAGACCTCA+AGG | + | chr1_3:12881624-12881643 | Msa0104720:intron | 50.0% | |
| !! | TGGTAATTGGCTTGGGACCT+GGG | - | chr1_3:12881661-12881680 | None:intergenic | 50.0% |
| GTCCCAAGCCAATTACCACT+AGG | + | chr1_3:12881663-12881682 | Msa0104720:intron | 50.0% | |
| ! | GGCCTAGTGGTAATTGGCTT+GGG | - | chr1_3:12881668-12881687 | None:intergenic | 50.0% |
| TGGCCTAGTGGTAATTGGCT+TGG | - | chr1_3:12881669-12881688 | None:intergenic | 50.0% | |
| !! | TGGGTTGGCCTAGTGGTAAT+TGG | - | chr1_3:12881674-12881693 | None:intergenic | 50.0% |
| GTTTGAGTATGGGTTCAGGG+TGG | - | chr1_3:12882282-12882301 | None:intergenic | 50.0% | |
| CGGGTTTGAGTATGGGTTCA+GGG | - | chr1_3:12882285-12882304 | None:intergenic | 50.0% | |
| ACGGGTTTGAGTATGGGTTC+AGG | - | chr1_3:12882286-12882305 | None:intergenic | 50.0% | |
| ! | TTCGCGACGGGTTTGAGTAT+GGG | - | chr1_3:12882292-12882311 | None:intergenic | 50.0% |
| ! | ATTCGCGACGGGTTTGAGTA+TGG | - | chr1_3:12882293-12882312 | None:intergenic | 50.0% |
| ATCCTCATCCCCGATGAGTT+CGG | - | chr1_3:12882549-12882568 | None:intergenic | 50.0% | |
| AACTCATCGGGGATGAGGAT+GGG | + | chr1_3:12882549-12882568 | Msa0104720:intron | 50.0% | |
| ATCCCCGTTGAGTATGGGTA+GGG | + | chr1_3:12882583-12882602 | Msa0104720:intron | 50.0% | |
| TACCCTACCCATACTCAACG+GGG | - | chr1_3:12882588-12882607 | None:intergenic | 50.0% | |
| ! | CTGCTTCTTTTGTTGCCGCT+TGG | + | chr1_3:12882999-12883018 | Msa0104720:intron | 50.0% |
| AGGACTACATGCTCAGCTTC+TGG | - | chr1_3:12883686-12883705 | None:intergenic | 50.0% | |
| GCCTGAATCCTAGGTAGTGT+TGG | - | chr1_3:12883800-12883819 | None:intergenic | 50.0% | |
| TTTCCTGGTGCCTGAATCCT+AGG | - | chr1_3:12883809-12883828 | None:intergenic | 50.0% | |
| ! | GTCTTGCTGCTTCAATCTGC+AGG | - | chr1_3:12883910-12883929 | None:intergenic | 50.0% |
| ACAGTTGCGGCAGCCATAAA+AGG | - | chr1_3:12884277-12884296 | None:intergenic | 50.0% | |
| ! | TTTTATGGCTGCCGCAACTG+TGG | + | chr1_3:12884276-12884295 | Msa0104720:intron | 50.0% |
| AACGCGTGATCTCGTGATTC+TGG | + | chr1_3:12885032-12885051 | Msa0104720:CDS | 50.0% | |
| ! | ATCCTACAATGGTGGTGACC+AGG | + | chr1_3:12885389-12885408 | Msa0104720:CDS | 50.0% |
| ! | TCCTACAATGGTGGTGACCA+GGG | + | chr1_3:12885390-12885409 | Msa0104720:CDS | 50.0% |
| AGGCGACGAGGATGAGAAAA+AGG | + | chr1_3:12885485-12885504 | Msa0104720:CDS | 50.0% | |
| GCGACGAAAACTCGTCTCTT+TGG | + | chr1_3:12885507-12885526 | Msa0104720:CDS | 50.0% | |
| TCCGAGATTACGACTGCAAC+TGG | + | chr1_3:12885589-12885608 | Msa0104720:CDS | 50.0% | |
| TTACGACTGCAACTGGAACG+TGG | + | chr1_3:12885596-12885615 | Msa0104720:CDS | 50.0% | |
| GTTAGAGTGGGATCGTAGAC+AGG | + | chr1_3:12885734-12885753 | Msa0104720:CDS | 50.0% | |
| GATCGTAGACAGGCCAAGAA+AGG | + | chr1_3:12885744-12885763 | Msa0104720:CDS | 50.0% | |
| ! | GGCATTGGGGTGACAAGAAT+TGG | + | chr1_3:12885859-12885878 | Msa0104720:CDS | 50.0% |
| ACCGCTCCAACTCCAAGTCA+TGG | + | chr1_3:12879324-12879343 | Msa0104720:five_prime_UTR | 55.0% | |
| ! | ACGTGGCTCAACGGTGTTAG+GGG | - | chr1_3:12879576-12879595 | None:intergenic | 55.0% |
| ! | GACGTGGCTCAACGGTGTTA+GGG | - | chr1_3:12879577-12879596 | None:intergenic | 55.0% |
| TGACGTGGCTCAACGGTGTT+AGG | - | chr1_3:12879578-12879597 | None:intergenic | 55.0% | |
| GCGAGCGGACCTATGAAACA+CGG | + | chr1_3:12879797-12879816 | Msa0104720:intron | 55.0% | |
| ATGAAGCGCGGATACGGACA+CGG | - | chr1_3:12879927-12879946 | None:intergenic | 55.0% | |
| TGTCCGTATCCGCGCTTCAT+TGG | + | chr1_3:12879927-12879946 | Msa0104720:intron | 55.0% | |
| GCTCCAATGAAGCGCGGATA+CGG | - | chr1_3:12879933-12879952 | None:intergenic | 55.0% | |
| GTATCCGCGCTTCATTGGAG+CGG | + | chr1_3:12879932-12879951 | Msa0104720:intron | 55.0% | |
| TAGACGCTCGAGCGCATTAG+TGG | + | chr1_3:12881389-12881408 | Msa0104720:intron | 55.0% | |
| TCGAACCTGAGACCTCAAGG+AGG | + | chr1_3:12881627-12881646 | Msa0104720:intron | 55.0% | |
| !! | GTGGTAATTGGCTTGGGACC+TGG | - | chr1_3:12881662-12881681 | None:intergenic | 55.0% |
| TACCACTAGGCCAACCCAAG+TGG | + | chr1_3:12881676-12881695 | Msa0104720:intron | 55.0% | |
| ACCACTAGGCCAACCCAAGT+GGG | + | chr1_3:12881677-12881696 | Msa0104720:intron | 55.0% | |
| GGCAACAAAACCCATACCCG+CGG | + | chr1_3:12882134-12882153 | Msa0104720:intron | 55.0% | |
| !! | TTGATTTGGGCGGGTAACCG+CGG | - | chr1_3:12882154-12882173 | None:intergenic | 55.0% |
| ACGGGTATGAGACGGGTAAC+AGG | + | chr1_3:12882245-12882264 | Msa0104720:intron | 55.0% | |
| ATTCAATGCGGGGATGGGGA+TGG | + | chr1_3:12882512-12882531 | Msa0104720:intron | 55.0% | |
| TTCAATGCGGGGATGGGGAT+GGG | + | chr1_3:12882513-12882532 | Msa0104720:intron | 55.0% | |
| GCGGGGATATCCGAACTCAT+CGG | + | chr1_3:12882536-12882555 | Msa0104720:intron | 55.0% | |
| CGGGGATATCCGAACTCATC+GGG | + | chr1_3:12882537-12882556 | Msa0104720:intron | 55.0% | |
| GGGGATATCCGAACTCATCG+GGG | + | chr1_3:12882538-12882557 | Msa0104720:intron | 55.0% | |
| ATCCGAACTCATCGGGGATG+AGG | + | chr1_3:12882544-12882563 | Msa0104720:intron | 55.0% | |
| GAACTCATCGGGGATGAGGA+TGG | + | chr1_3:12882548-12882567 | Msa0104720:intron | 55.0% | |
| CATCCCCGTTGAGTATGGGT+AGG | + | chr1_3:12882582-12882601 | Msa0104720:intron | 55.0% | |
| TTAGGCATGGCAATGGGGCA+GGG | - | chr1_3:12882690-12882709 | None:intergenic | 55.0% | |
| TTTAGGCATGGCAATGGGGC+AGG | - | chr1_3:12882691-12882710 | None:intergenic | 55.0% | |
| CTGGTACTAGCTGCTTCCAG+TGG | - | chr1_3:12883667-12883686 | None:intergenic | 55.0% | |
| CTACCTAGGATTCAGGCACC+AGG | + | chr1_3:12883803-12883822 | Msa0104720:CDS | 55.0% | |
| AAGCTTCCCTGCGACAAGTC+AGG | + | chr1_3:12883854-12883873 | Msa0104720:CDS | 55.0% | |
| AGCTTCCCTGCGACAAGTCA+GGG | + | chr1_3:12883855-12883874 | Msa0104720:CDS | 55.0% | |
| CAGGTCGGGTTCATAAAGCC+AGG | - | chr1_3:12884044-12884063 | None:intergenic | 55.0% | |
| CCGGTCAACAACCACAGTTG+CGG | - | chr1_3:12884290-12884309 | None:intergenic | 55.0% | |
| CCGCAACTGTGGTTGTTGAC+CGG | + | chr1_3:12884287-12884306 | Msa0104720:intron | 55.0% | |
| ACCCTGGTCACCACCATTGT+AGG | - | chr1_3:12885394-12885413 | None:intergenic | 55.0% | |
| ! | ACATTTCTGGGAAGGCGACG+AGG | + | chr1_3:12885473-12885492 | Msa0104720:CDS | 55.0% |
| CTGGAACGTGGACATTCTGC+AGG | + | chr1_3:12885608-12885627 | Msa0104720:CDS | 55.0% | |
| CGAGCAATGTAGCTCATGCG+AGG | + | chr1_3:12885637-12885656 | Msa0104720:CDS | 55.0% | |
| GCAATGTAGCTCATGCGAGG+TGG | + | chr1_3:12885640-12885659 | Msa0104720:CDS | 55.0% | |
| ATGTAGCTCATGCGAGGTGG+TGG | + | chr1_3:12885643-12885662 | Msa0104720:CDS | 55.0% | |
| AGCAGAAGGCAGCGTTAGAG+TGG | + | chr1_3:12885721-12885740 | Msa0104720:CDS | 55.0% | |
| GCAGAAGGCAGCGTTAGAGT+GGG | + | chr1_3:12885722-12885741 | Msa0104720:CDS | 55.0% | |
| TGGTGGAGACTGGAGAGTGG+TGG | - | chr1_3:12879356-12879375 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGAGACTGGAGAG+TGG | - | chr1_3:12879359-12879378 | None:intergenic | 60.0% |
| ! | GGCTCAACGGTGTTAGGGGT+GGG | - | chr1_3:12879572-12879591 | None:intergenic | 60.0% |
| ! | TGGCTCAACGGTGTTAGGGG+TGG | - | chr1_3:12879573-12879592 | None:intergenic | 60.0% |
| CGCTCTGCTATGCACTCGAG+CGG | - | chr1_3:12879780-12879799 | None:intergenic | 60.0% | |
| CGAGTGCATAGCAGAGCGAG+CGG | + | chr1_3:12879782-12879801 | Msa0104720:intron | 60.0% | |
| GTGTCCGCTCCAATGAAGCG+CGG | - | chr1_3:12879939-12879958 | None:intergenic | 60.0% | |
| GTGCTCCTCCTTGAGGTCTC+AGG | - | chr1_3:12881635-12881654 | None:intergenic | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | - | chr1_3:12881642-12881661 | None:intergenic | 60.0% |
| ! | TCAAGGAGGAGCACACTCCC+AGG | + | chr1_3:12881641-12881660 | Msa0104720:intron | 60.0% |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | - | chr1_3:12881681-12881700 | None:intergenic | 60.0% |
| ! | TGATTTGGGCGGGTAACCGC+GGG | - | chr1_3:12882153-12882172 | None:intergenic | 60.0% |
| TCAATGCGGGGATGGGGATG+GGG | + | chr1_3:12882514-12882533 | Msa0104720:intron | 60.0% | |
| ATCAGGTATGGGGACGGGGA+AGG | + | chr1_3:12882649-12882668 | Msa0104720:intron | 60.0% | |
| !! | AGCTCATGCGAGGTGGTGGA+AGG | + | chr1_3:12885647-12885666 | Msa0104720:CDS | 60.0% |
| CATGGCAATGGGGCAGGGTG+GGG | - | chr1_3:12882685-12882704 | None:intergenic | 65.0% | |
| GCATGGCAATGGGGCAGGGT+GGG | - | chr1_3:12882686-12882705 | None:intergenic | 65.0% | |
| ! | CAGCGCCCTGACTTGTCGCA+GGG | - | chr1_3:12883863-12883882 | None:intergenic | 65.0% |
| ! | TGCAGCGTGACGGGAATGCC+TGG | + | chr1_3:12884023-12884042 | Msa0104720:intron | 65.0% |
| ! | AGGAGTGGCTTGGCAGCAGC+TGG | + | chr1_3:12885081-12885100 | Msa0104720:CDS | 65.0% |
| ! | GTGGCTTGGCAGCAGCTGGA+TGG | + | chr1_3:12885085-12885104 | Msa0104720:CDS | 65.0% |
| GGGCGGGTAACCGCGGGTAT+GGG | - | chr1_3:12882147-12882166 | None:intergenic | 70.0% | |
| TGGGCGGGTAACCGCGGGTA+TGG | - | chr1_3:12882148-12882167 | None:intergenic | 70.0% | |
| ATGCGGGGATGGGGATGGGG+CGG | + | chr1_3:12882517-12882536 | Msa0104720:intron | 70.0% | |
| CAATGGGGCAGGGTGGGGAC+GGG | - | chr1_3:12882680-12882699 | None:intergenic | 70.0% | |
| GCAATGGGGCAGGGTGGGGA+CGG | - | chr1_3:12882681-12882700 | None:intergenic | 70.0% | |
| GGCATGGCAATGGGGCAGGG+TGG | - | chr1_3:12882687-12882706 | None:intergenic | 70.0% | |
| ! | CCAGCGCCCTGACTTGTCGC+AGG | - | chr1_3:12883864-12883883 | None:intergenic | 70.0% |
| CCTGCGACAAGTCAGGGCGC+TGG | + | chr1_3:12883861-12883880 | Msa0104720:CDS | 70.0% | |
| TGCGGGGATGGGGATGGGGC+GGG | + | chr1_3:12882518-12882537 | Msa0104720:intron | 75.0% | |
| ! | GCGGGGATGGGGATGGGGCG+GGG | + | chr1_3:12882519-12882538 | Msa0104720:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 12879304 | 12886200 | 12879304 | ID=Msa0104720;Name=Msa0104720 |
| chr1_3 | mRNA | 12879304 | 12886200 | 12879304 | ID=Msa0104720-mRNA-1;Parent=Msa0104720;Name=Msa0104720-mRNA-1;_AED=0.16;_eAED=0.16;_QI=256|0.6|0.5|1|0.4|0.33|6|250|619 |
| chr1_3 | exon | 12879304 | 12879621 | 12879304 | ID=Msa0104720-mRNA-1:exon:5045;Parent=Msa0104720-mRNA-1 |
| chr1_3 | exon | 12883073 | 12883279 | 12883073 | ID=Msa0104720-mRNA-1:exon:5046;Parent=Msa0104720-mRNA-1 |
| chr1_3 | exon | 12883496 | 12883725 | 12883496 | ID=Msa0104720-mRNA-1:exon:5047;Parent=Msa0104720-mRNA-1 |
| chr1_3 | exon | 12883744 | 12883964 | 12883744 | ID=Msa0104720-mRNA-1:exon:5048;Parent=Msa0104720-mRNA-1 |
| chr1_3 | exon | 12884028 | 12884133 | 12884028 | ID=Msa0104720-mRNA-1:exon:5049;Parent=Msa0104720-mRNA-1 |
| chr1_3 | exon | 12884917 | 12886200 | 12884917 | ID=Msa0104720-mRNA-1:exon:5050;Parent=Msa0104720-mRNA-1 |
| chr1_3 | five_prime_UTR | 12879304 | 12879559 | 12879304 | ID=Msa0104720-mRNA-1:five_prime_utr;Parent=Msa0104720-mRNA-1 |
| chr1_3 | CDS | 12879560 | 12879621 | 12879560 | ID=Msa0104720-mRNA-1:cds;Parent=Msa0104720-mRNA-1 |
| chr1_3 | CDS | 12883073 | 12883279 | 12883073 | ID=Msa0104720-mRNA-1:cds;Parent=Msa0104720-mRNA-1 |
| chr1_3 | CDS | 12883496 | 12883725 | 12883496 | ID=Msa0104720-mRNA-1:cds;Parent=Msa0104720-mRNA-1 |
| chr1_3 | CDS | 12883744 | 12883964 | 12883744 | ID=Msa0104720-mRNA-1:cds;Parent=Msa0104720-mRNA-1 |
| chr1_3 | CDS | 12884028 | 12884133 | 12884028 | ID=Msa0104720-mRNA-1:cds;Parent=Msa0104720-mRNA-1 |
| chr1_3 | CDS | 12884917 | 12885950 | 12884917 | ID=Msa0104720-mRNA-1:cds;Parent=Msa0104720-mRNA-1 |
| chr1_3 | three_prime_UTR | 12885951 | 12886200 | 12885951 | ID=Msa0104720-mRNA-1:three_prime_utr;Parent=Msa0104720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
