AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170210 MtrunA17_Chr1g0187761 97.308 260 5 2 1 260 1 258 0.0 519
Msa0170210 MtrunA17_Chr1g0167691 67.910 268 65 9 1 260 1 255 1.49e-111 321
Msa0170210 MtrunA17_Chr1g0167661 62.642 265 83 5 1 260 1 254 2.17e-106 308
Msa0170210 MtrunA17_Chr7g0261281 45.070 284 126 6 1 260 1 278 9.58e-77 234
Msa0170210 MtrunA17_Chr7g0274581 46.032 252 88 5 1 252 1 204 1.41e-72 221
Msa0170210 MtrunA17_Chr1g0203411 64.430 149 53 0 1 149 1 149 3.11e-67 210
Msa0170210 MtrunA17_Chr4g0039971 69.925 133 37 1 1 133 2 131 7.74e-65 206
Msa0170210 MtrunA17_Chr3g0115821 72.881 118 32 0 1 118 1 118 1.50e-62 199
Msa0170210 MtrunA17_Chr8g0349261 63.087 149 51 3 1 145 1 149 5.75e-62 197
Msa0170210 MtrunA17_Chr4g0048511 74.359 117 29 1 1 116 1 117 2.66e-61 197
Msa0170210 MtrunA17_Chr8g0346561 69.106 123 37 1 1 123 1 122 2.82e-61 195
Msa0170210 MtrunA17_Chr2g0281071 73.504 117 30 1 1 116 1 117 2.88e-61 196
Msa0170210 MtrunA17_Chr7g0275911 71.552 116 33 0 1 116 1 116 5.87e-61 192
Msa0170210 MtrunA17_Chr4g0068061 73.276 116 31 0 1 116 1 116 1.19e-60 194
Msa0170210 MtrunA17_Chr7g0217741 65.909 132 42 1 1 132 1 129 1.86e-60 193
Msa0170210 MtrunA17_Chr4g0042671 60.667 150 56 1 1 150 1 147 2.07e-60 196
Msa0170210 MtrunA17_Chr2g0323351 45.495 222 93 3 1 197 1 219 3.97e-60 190
Msa0170210 MtrunA17_Chr5g0395281 72.881 118 32 0 1 118 1 118 5.25e-60 192
Msa0170210 MtrunA17_Chr6g0453471 58.333 156 56 2 1 156 1 147 6.88e-60 193
Msa0170210 MtrunA17_Chr2g0323411 72.414 116 32 0 1 116 1 116 9.26e-60 192
Msa0170210 MtrunA17_Chr4g0037141 53.333 180 77 2 1 173 1 180 1.16e-59 190
Msa0170210 MtrunA17_Chr3g0092401 63.504 137 47 1 1 134 2 138 1.25e-59 191
Msa0170210 MtrunA17_Chr4g0022891 47.111 225 101 4 1 207 1 225 4.48e-59 187
Msa0170210 MtrunA17_Chr4g0060721 64.567 127 45 0 1 127 2 128 1.09e-58 189
Msa0170210 MtrunA17_Chr3g0121241 69.643 112 34 0 5 116 35 146 1.25e-57 186
Msa0170210 MtrunA17_Chr2g0311221 73.554 121 32 0 3 123 5 125 1.57e-57 186
Msa0170210 MtrunA17_Chr5g0410961 70.690 116 34 0 1 116 1 116 1.88e-57 186
Msa0170210 MtrunA17_Chr3g0131121 60.417 144 49 1 1 144 1 136 6.69e-57 184
Msa0170210 MtrunA17_Chr7g0217221 62.791 129 48 0 1 129 1 129 7.67e-57 182
Msa0170210 MtrunA17_Chr8g0385321 70.690 116 34 0 1 116 1 116 1.07e-56 184
Msa0170210 MtrunA17_Chr4g0070611 68.103 116 37 0 1 116 1 116 2.05e-56 182
Msa0170210 MtrunA17_Chr1g0193371 54.268 164 72 1 1 164 1 161 2.67e-56 184
Msa0170210 MtrunA17_Chr4g0070641 50.888 169 76 2 1 162 1 169 3.00e-56 177
Msa0170210 MtrunA17_Chr1g0194951 68.966 116 36 0 1 116 1 116 5.69e-56 183
Msa0170210 MtrunA17_Chr7g0228891 48.404 188 97 0 1 188 1 188 8.23e-56 180
Msa0170210 MtrunA17_Chr7g0254411 54.268 164 65 1 1 164 1 154 8.69e-56 182
Msa0170210 MtrunA17_Chr4g0022901 47.783 203 84 5 1 190 1 194 1.97e-55 179
Msa0170210 MtrunA17_Chr4g0022931 39.852 271 115 9 1 224 1 270 5.81e-55 178
Msa0170210 MtrunA17_Chr6g0453211 69.369 111 34 0 1 111 1 111 8.74e-55 179
Msa0170210 MtrunA17_Chr4g0022911 46.429 196 99 3 1 190 1 196 1.15e-54 177
Msa0170210 MtrunA17_Chr3g0110351 43.231 229 116 4 1 225 1 219 1.52e-54 178
Msa0170210 MtrunA17_Chr4g0022881 59.091 132 53 1 1 132 1 131 9.10e-54 173
Msa0170210 MtrunA17_Chr1g0151941 66.667 117 38 1 1 116 1 117 3.22e-53 173
Msa0170210 MtrunA17_Chr4g0057031 66.379 116 39 0 1 116 1 116 3.62e-53 173
Msa0170210 MtrunA17_Chr7g0270891 67.797 118 38 0 1 118 1 118 4.01e-53 176
Msa0170210 MtrunA17_Chr5g0434571 66.102 118 40 0 1 118 37 154 4.26e-53 176
Msa0170210 MtrunA17_Chr3g0103281 66.379 116 39 0 1 116 1 116 5.54e-53 174
Msa0170210 MtrunA17_Chr7g0269831 69.828 116 35 0 1 116 1 116 1.78e-52 174
Msa0170210 MtrunA17_Chr5g0435101 62.609 115 43 0 2 116 1 115 2.97e-52 169
Msa0170210 MtrunA17_Chr1g0193801 66.102 118 40 0 1 118 1 118 3.31e-52 174
Msa0170210 MtrunA17_Chr7g0271241 69.725 109 33 0 1 109 1 109 6.06e-52 173
Msa0170210 MtrunA17_Chr1g0152011 52.795 161 69 2 1 160 1 155 2.47e-51 171
Msa0170210 MtrunA17_Chr4g0058631 52.500 160 75 1 1 159 1 160 9.07e-51 170
Msa0170210 MtrunA17_Chr6g0487491 55.556 153 59 2 1 144 1 153 1.00e-50 167
Msa0170210 MtrunA17_Chr3g0135311 53.947 152 68 2 1 151 1 151 3.14e-50 168
Msa0170210 MtrunA17_Chr4g0028311 65.812 117 39 1 1 116 1 117 4.21e-50 167
Msa0170210 MtrunA17_Chr2g0309911 64.865 111 39 0 6 116 5 115 7.42e-50 166
Msa0170210 MtrunA17_Chr5g0400821 58.273 139 54 3 1 135 1 139 1.68e-49 165
Msa0170210 MtrunA17_Chr2g0330041 63.793 116 42 0 1 116 1 116 1.77e-49 167
Msa0170210 MtrunA17_Chr3g0117091 66.379 116 39 0 1 116 1 116 2.98e-49 165
Msa0170210 MtrunA17_Chr8g0342541 62.069 116 44 0 1 116 1 116 4.80e-49 165
Msa0170210 MtrunA17_Chr1g0211161 64.912 114 40 0 3 116 4 117 1.24e-48 160
Msa0170210 MtrunA17_Chr6g0452271 62.069 116 44 0 1 116 1 116 1.49e-48 163
Msa0170210 MtrunA17_Chr8g0342521 62.069 116 44 0 1 116 1 116 1.66e-48 163
Msa0170210 MtrunA17_Chr4g0044421 61.207 116 44 1 2 116 1 116 6.56e-48 157
Msa0170210 MtrunA17_Chr8g0387421 62.069 116 44 0 1 116 1 116 9.24e-48 160
Msa0170210 MtrunA17_Chr7g0264641 59.504 121 48 1 1 120 1 121 1.38e-47 159
Msa0170210 MtrunA17_Chr5g0417821 64.486 107 38 0 10 116 5 111 1.77e-47 159
Msa0170210 MtrunA17_Chr4g0054391 44.385 187 96 3 1 179 1 187 2.12e-47 159
Msa0170210 MtrunA17_Chr2g0327351 63.964 111 39 1 1 110 1 111 3.96e-47 159
Msa0170210 MtrunA17_Chr1g0209661 59.836 122 48 1 12 132 27 148 1.14e-45 155
Msa0170210 MtrunA17_Chr5g0397231 63.636 110 40 0 1 110 1 110 1.35e-45 155
Msa0170210 MtrunA17_Chr1g0203441 65.385 104 36 0 13 116 14 117 1.73e-45 153
Msa0170210 MtrunA17_Chr6g0470971 53.521 142 59 2 4 144 6 141 2.31e-45 153
Msa0170210 MtrunA17_Chr4g0072751 63.964 111 39 1 1 110 1 111 2.61e-45 155
Msa0170210 MtrunA17_Chr7g0240821 47.159 176 80 5 17 183 6 177 2.89e-45 152
Msa0170210 MtrunA17_Chr2g0328771 61.607 112 43 0 12 123 20 131 8.48e-45 153
Msa0170210 MtrunA17_Chr4g0032401 64.762 105 37 0 12 116 17 121 1.40e-44 153
Msa0170210 MtrunA17_Chr8g0342481 59.829 117 46 1 1 116 1 117 2.72e-44 154
Msa0170210 MtrunA17_Chr7g0228231 58.621 116 47 1 12 126 14 129 4.33e-44 148
Msa0170210 MtrunA17_Chr8g0343831 57.627 118 46 1 1 118 1 114 1.06e-43 148
Msa0170210 MtrunA17_Chr4g0055981 61.682 107 41 0 9 115 52 158 1.11e-43 147
Msa0170210 MtrunA17_Chr6g0450101 55.738 122 52 1 1 120 1 122 1.47e-43 146
Msa0170210 MtrunA17_Chr5g0434911 55.455 110 49 0 7 116 16 125 2.69e-43 148
Msa0170210 MtrunA17_Chr1g0186061 61.165 103 40 0 13 115 21 123 4.58e-43 147
Msa0170210 MtrunA17_Chr8g0354661 61.538 104 40 0 12 115 37 140 6.08e-43 153
Msa0170210 MtrunA17_Chr5g0434931 57.547 106 45 0 11 116 34 139 6.21e-43 147
Msa0170210 MtrunA17_Chr1g0154031 60.577 104 41 0 12 115 76 179 1.17e-42 150
Msa0170210 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 2.42e-42 145
Msa0170210 MtrunA17_Chr2g0294811 68.478 92 29 0 1 92 1 92 2.73e-42 140
Msa0170210 MtrunA17_Chr3g0088461 63.889 108 39 0 9 116 19 126 2.98e-42 147
Msa0170210 MtrunA17_Chr5g0434831 58.491 106 44 0 11 116 6 111 3.34e-42 142
Msa0170210 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 9.41e-42 149
Msa0170210 MtrunA17_Chr3g0080861 60.577 104 41 0 12 115 37 140 1.44e-41 149
Msa0170210 MtrunA17_Chr1g0194291 60.185 108 43 0 11 118 20 127 1.70e-41 143
Msa0170210 MtrunA17_Chr7g0220341 52.941 119 54 1 10 126 23 141 5.09e-41 142
Msa0170210 MtrunA17_Chr1g0194301 54.955 111 50 0 8 118 29 139 5.38e-41 142
Msa0170210 MtrunA17_Chr2g0322521 59.813 107 43 0 9 115 26 132 8.11e-41 144
Msa0170210 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 1.17e-40 135
Msa0170210 MtrunA17_Chr7g0228991 55.660 106 47 0 11 116 28 133 1.61e-39 138
Msa0170210 MtrunA17_Chr5g0434841 55.660 106 47 0 11 116 19 124 2.46e-39 139
Msa0170210 MtrunA17_Chr1g0180391 47.619 147 74 1 12 158 19 162 2.97e-39 136
Msa0170210 MtrunA17_Chr4g0068921 59.633 109 44 0 10 118 22 130 1.11e-38 134
Msa0170210 MtrunA17_Chr8g0360111 54.902 102 46 0 11 112 24 125 1.42e-38 135
Msa0170210 MtrunA17_Chr7g0247131 78.378 74 16 0 43 116 9 82 2.37e-38 135
Msa0170210 MtrunA17_Chr2g0293911 57.658 111 47 0 8 118 20 130 2.97e-38 136
Msa0170210 MtrunA17_Chr2g0323321 63.043 92 33 1 1 92 1 91 7.62e-38 129
Msa0170210 MtrunA17_Chr1g0192411 53.774 106 49 0 10 115 10 115 4.11e-37 135
Msa0170210 MtrunA17_Chr2g0327821 42.169 166 90 2 12 175 6 167 2.07e-36 129
Msa0170210 MtrunA17_Chr5g0395221 65.909 88 30 0 1 88 1 88 3.62e-36 124
Msa0170210 MtrunA17_Chr8g0342531 61.798 89 34 0 1 89 1 89 1.81e-35 124
Msa0170210 MtrunA17_Chr5g0441141 33.469 245 136 6 13 243 13 244 2.31e-35 127
Msa0170210 MtrunA17_Chr5g0440781 52.427 103 48 1 13 114 13 115 2.76e-35 124
Msa0170210 MtrunA17_Chr5g0440761 33.469 245 136 6 13 243 13 244 4.50e-35 126
Msa0170210 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 8.18e-35 120
Msa0170210 MtrunA17_Chr4g0030881 51.327 113 48 1 13 118 8 120 1.20e-34 125
Msa0170210 MtrunA17_Chr5g0441131 51.456 103 49 1 13 114 10 112 6.37e-33 118
Msa0170210 MtrunA17_Chr8g0342461 60.000 90 35 1 1 89 1 90 5.88e-32 114
Msa0170210 MtrunA17_Chr3g0099141 57.831 83 35 0 12 94 40 122 1.58e-31 113
Msa0170210 MtrunA17_Chr8g0342471 60.000 90 35 1 1 89 1 90 2.01e-31 113
Msa0170210 MtrunA17_Chr8g0334881 49.038 104 52 1 12 114 10 113 2.74e-31 117
Msa0170210 MtrunA17_Chr4g0013361 47.222 108 56 1 8 114 6 113 6.31e-30 114
Msa0170210 MtrunA17_Chr6g0454921 53.398 103 45 2 14 115 15 115 7.73e-30 111
Msa0170210 MtrunA17_Chr5g0401731 40.491 163 85 4 8 164 9 165 2.73e-29 112
Msa0170210 MtrunA17_Chr4g0008551 36.464 181 106 4 14 192 38 211 4.72e-29 112
Msa0170210 MtrunA17_Chr3g0133601 46.552 116 59 2 9 123 32 145 1.10e-28 108
Msa0170210 MtrunA17_Chr4g0042501 39.850 133 77 2 14 145 105 235 1.14e-27 110
Msa0170210 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 2.70e-27 104
Msa0170210 MtrunA17_Chr4g0053431 49.057 106 45 2 14 115 5 105 3.78e-27 105
Msa0170210 MtrunA17_Chr5g0425591 52.439 82 38 1 13 93 10 91 6.32e-27 100
Msa0170210 MtrunA17_Chr5g0417621 39.456 147 85 3 14 159 134 277 1.20e-26 107
Msa0170210 MtrunA17_Chr6g0480581 50.000 102 48 2 14 114 4 103 2.65e-26 102
Msa0170210 MtrunA17_Chr5g0434901 63.636 66 24 0 48 113 9 74 4.25e-26 99.0
Msa0170210 MtrunA17_Chr7g0229131 56.757 74 32 0 43 116 3 76 6.27e-26 100
Msa0170210 MtrunA17_Chr7g0238631 38.509 161 88 3 12 163 111 269 7.28e-26 105
Msa0170210 MtrunA17_Chr3g0139671 46.729 107 54 2 12 117 83 187 5.08e-25 103
Msa0170210 MtrunA17_Chr3g0139671 34.259 108 65 3 14 118 33 137 1.71e-13 70.1
Msa0170210 MtrunA17_Chr1g0157731 44.860 107 56 2 12 117 89 193 1.64e-24 102
Msa0170210 MtrunA17_Chr1g0157731 34.259 108 65 3 14 118 39 143 3.78e-13 68.9
Msa0170210 MtrunA17_Chr5g0429661 39.610 154 81 4 12 155 120 271 7.28e-24 98.6
Msa0170210 MtrunA17_Chr4g0058991 39.831 118 68 2 8 124 203 318 1.03e-23 99.4
Msa0170210 MtrunA17_Chr3g0117511 39.831 118 68 2 8 124 177 292 1.04e-23 99.4
Msa0170210 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 1.19e-23 92.8
Msa0170210 MtrunA17_Chr3g0125801 45.614 114 59 2 14 126 16 127 2.93e-23 95.9
Msa0170210 MtrunA17_Chr3g0093811 56.579 76 33 0 43 118 13 88 3.05e-22 92.8
Msa0170210 MtrunA17_Chr7g0254261 38.621 145 83 3 14 157 89 228 6.47e-22 93.2
Msa0170210 MtrunA17_Chr6g0460661 45.263 95 49 2 17 110 19 111 2.27e-21 87.8
Msa0170210 MtrunA17_Chr5g0437321 45.000 100 52 2 14 112 19 116 4.19e-21 90.1
Msa0170210 MtrunA17_Chr6g0460671 37.671 146 84 4 14 154 99 242 5.53e-21 90.5
Msa0170210 MtrunA17_Chr7g0228531 40.517 116 63 3 10 121 216 329 5.41e-20 88.6
Msa0170210 MtrunA17_Chr7g0228401 42.157 102 55 3 25 125 290 388 2.06e-19 87.0
Msa0170210 MtrunA17_Chr5g0397841 44.444 99 52 2 12 109 108 204 6.23e-19 85.9
Msa0170210 MtrunA17_Chr1g0193901 58.621 58 23 1 12 68 11 68 2.26e-18 78.6
Msa0170210 MtrunA17_Chr1g0193891 58.621 58 23 1 12 68 11 68 2.26e-18 78.6
Msa0170210 MtrunA17_Chr1g0193871 58.621 58 23 1 12 68 11 68 2.26e-18 78.6
Msa0170210 MtrunA17_Chr1g0193881 58.621 58 23 1 12 68 11 68 2.26e-18 78.6
Msa0170210 MtrunA17_Chr7g0238651 36.207 116 72 1 14 127 7 122 2.27e-18 83.6
Msa0170210 MtrunA17_Chr1g0177901 42.708 96 53 2 24 119 4 97 2.46e-18 80.9
Msa0170210 MtrunA17_Chr7g0228481 37.069 116 67 3 10 121 216 329 6.77e-17 79.7
Msa0170210 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 1.24e-16 72.4
Msa0170210 MtrunA17_Chr7g0233061 34.074 135 79 4 14 145 180 307 5.83e-16 76.6
Msa0170210 MtrunA17_Chr8g0362231 36.283 113 68 3 17 127 25 135 8.81e-16 76.3
Msa0170210 MtrunA17_Chr5g0416341 39.394 99 59 1 17 115 29 126 1.28e-15 75.9
Msa0170210 MtrunA17_Chr5g0434871 65.116 43 15 0 74 116 2 44 1.79e-15 69.3
Msa0170210 MtrunA17_Chr5g0434891 63.158 38 14 0 78 115 2 39 7.52e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170210 AT2G31180.1 51.504 266 106 6 1 260 1 249 1.30e-81 245
Msa0170210 AT3G23250.1 49.141 291 104 8 1 257 1 281 5.35e-81 245
Msa0170210 AT1G06180.1 59.901 202 66 4 1 197 1 192 1.09e-78 238
Msa0170210 AT4G21440.1 75.862 116 28 0 1 116 1 116 1.21e-64 206
Msa0170210 AT3G61250.1 74.138 116 30 0 1 116 1 116 1.75e-64 203
Msa0170210 AT1G79180.1 76.923 117 27 0 3 119 5 121 2.54e-64 203
Msa0170210 AT1G16490.1 61.146 157 60 1 3 158 5 161 3.80e-64 202
Msa0170210 AT5G16770.4 73.729 118 31 0 1 118 1 118 6.12e-63 200
Msa0170210 AT5G16770.3 73.729 118 31 0 1 118 1 118 6.12e-63 200
Msa0170210 AT5G16770.1 73.729 118 31 0 1 118 1 118 1.35e-62 200
Msa0170210 AT5G16770.2 73.729 118 31 0 1 118 1 118 1.35e-62 200
Msa0170210 AT3G02940.2 72.034 118 33 0 1 118 1 118 7.81e-62 197
Msa0170210 AT1G56160.1 74.561 114 29 0 3 116 5 118 1.20e-61 196
Msa0170210 AT3G02940.1 72.034 118 33 0 1 118 1 118 1.42e-61 197
Msa0170210 AT3G02940.3 72.034 118 33 0 1 118 1 118 1.42e-61 197
Msa0170210 AT5G49330.1 63.194 144 50 1 1 141 1 144 1.04e-60 195
Msa0170210 AT4G28110.1 70.690 116 34 0 1 116 1 116 2.58e-60 192
Msa0170210 AT3G01140.2 71.552 116 33 0 1 116 1 116 9.54e-60 193
Msa0170210 AT5G15310.1 65.152 132 43 1 1 132 1 129 1.22e-59 192
Msa0170210 AT5G15310.2 65.152 132 43 1 1 132 1 129 1.48e-59 191
Msa0170210 AT1G34670.1 72.034 118 33 0 1 118 1 118 1.53e-59 193
Msa0170210 AT5G15310.4 65.152 132 43 1 1 132 1 129 1.58e-59 189
Msa0170210 AT3G13540.1 70.796 113 33 0 4 116 15 127 1.60e-59 189
Msa0170210 AT2G16720.1 71.552 116 33 0 1 116 1 116 1.84e-59 189
Msa0170210 AT4G05100.1 71.795 117 32 1 1 116 1 117 1.92e-59 191
Msa0170210 AT3G28910.1 65.354 127 44 0 1 127 1 127 3.04e-59 191
Msa0170210 AT3G12820.1 73.684 114 30 0 3 116 5 118 4.13e-59 188
Msa0170210 AT4G38620.1 58.896 163 61 3 1 162 1 158 6.40e-59 189
Msa0170210 AT5G10280.1 69.492 118 36 0 1 118 1 118 1.20e-58 189
Msa0170210 AT3G01140.1 70.690 116 34 0 1 116 44 159 1.47e-58 191
Msa0170210 AT2G47460.1 61.074 149 49 2 1 149 1 140 3.54e-58 189
Msa0170210 AT1G22640.1 68.966 116 36 0 1 116 1 116 3.63e-58 186
Msa0170210 AT4G09460.1 68.966 116 36 0 1 116 1 116 5.42e-58 185
Msa0170210 AT1G08810.1 65.079 126 44 0 1 126 1 126 6.95e-58 186
Msa0170210 AT1G35515.1 68.103 116 37 0 1 116 1 116 1.14e-57 183
Msa0170210 AT1G79180.2 60.000 150 27 1 3 119 5 154 1.80e-57 186
Msa0170210 AT5G65230.1 70.339 118 35 0 1 118 1 118 3.48e-57 185
Msa0170210 AT5G62470.2 67.500 120 39 0 1 120 1 120 4.48e-57 186
Msa0170210 AT1G57560.1 48.780 205 91 4 1 194 1 202 1.10e-56 184
Msa0170210 AT4G17785.2 66.387 119 39 1 1 118 1 119 2.33e-56 184
Msa0170210 AT4G17785.1 66.387 119 39 1 1 118 1 119 2.66e-56 184
Msa0170210 AT1G57560.2 55.215 163 70 1 1 163 1 160 2.97e-56 182
Msa0170210 AT5G16600.1 68.966 116 36 0 1 116 1 116 4.32e-56 183
Msa0170210 AT1G74650.1 69.828 116 35 0 1 116 1 116 5.10e-56 182
Msa0170210 AT3G47600.1 66.667 120 40 0 1 120 1 120 5.12e-56 183
Msa0170210 AT5G62470.1 67.500 120 38 1 1 120 1 119 1.26e-55 182
Msa0170210 AT3G62610.1 69.231 117 36 0 1 117 1 117 1.71e-55 182
Msa0170210 AT4G34990.1 60.563 142 55 1 1 141 1 142 2.62e-55 179
Msa0170210 AT4G22680.1 66.379 116 39 0 1 116 1 116 9.44e-55 177
Msa0170210 AT4G12350.1 67.241 116 38 0 1 116 1 116 1.33e-54 177
Msa0170210 AT5G60890.1 64.407 118 42 0 1 118 1 118 1.78e-54 177
Msa0170210 AT1G18570.1 67.521 117 37 1 1 116 1 117 3.25e-54 179
Msa0170210 AT1G74080.1 66.379 116 39 0 1 116 1 116 4.66e-54 178
Msa0170210 AT1G66230.1 65.254 118 41 0 1 118 1 118 3.98e-53 174
Msa0170210 AT5G14340.1 66.379 116 39 0 1 116 13 128 4.02e-53 174
Msa0170210 AT1G09540.1 66.102 118 40 0 1 118 1 118 5.29e-53 176
Msa0170210 AT5G26660.1 68.103 116 37 0 1 116 1 116 6.89e-53 175
Msa0170210 AT4G01680.3 68.103 116 37 0 1 116 1 116 1.55e-52 171
Msa0170210 AT5G54230.1 73.333 105 28 0 12 116 12 116 2.67e-52 173
Msa0170210 AT4G01680.1 68.103 116 37 0 1 116 1 116 8.22e-52 172
Msa0170210 AT4G37780.1 64.103 117 41 1 1 116 1 117 1.62e-51 170
Msa0170210 AT5G07690.1 65.517 116 40 0 1 116 1 116 3.31e-51 171
Msa0170210 AT5G61420.2 64.655 116 41 0 1 116 1 116 3.49e-51 171
Msa0170210 AT5G56110.1 66.379 116 39 0 1 116 1 116 5.65e-51 169
Msa0170210 AT3G12720.1 64.865 111 39 0 6 116 16 126 1.58e-49 165
Msa0170210 AT5G62320.1 43.478 184 92 3 3 174 4 187 1.94e-49 163
Msa0170210 AT3G13890.2 62.931 116 43 0 1 116 1 116 6.72e-49 165
Msa0170210 AT5G07700.1 62.931 116 43 0 1 116 1 116 9.87e-49 164
Msa0170210 AT5G07700.2 62.931 116 43 0 1 116 1 116 9.87e-49 164
Msa0170210 AT3G49690.1 64.957 117 40 1 1 116 1 117 1.54e-48 163
Msa0170210 AT4G01680.2 61.719 128 37 1 1 116 1 128 2.24e-48 163
Msa0170210 AT5G57620.1 64.103 117 41 1 1 116 1 117 4.34e-48 162
Msa0170210 AT5G23000.1 63.248 117 42 1 1 116 1 117 5.19e-48 162
Msa0170210 AT5G14750.1 59.292 113 46 0 13 125 17 129 7.58e-48 158
Msa0170210 AT5G35550.1 50.980 153 69 1 12 164 14 160 1.67e-47 159
Msa0170210 AT5G65790.1 63.248 117 42 1 1 116 1 117 1.69e-47 162
Msa0170210 AT2G36890.1 64.167 120 42 1 1 119 1 120 2.02e-47 159
Msa0170210 AT2G36890.2 64.167 120 42 1 1 119 42 161 3.08e-47 160
Msa0170210 AT1G63910.1 43.137 204 112 2 1 203 1 201 6.13e-47 160
Msa0170210 AT5G40330.1 43.558 163 80 1 13 175 13 163 6.39e-47 156
Msa0170210 AT1G74430.1 65.094 106 37 0 11 116 11 116 5.54e-46 155
Msa0170210 AT3G13890.1 58.400 125 43 1 1 116 1 125 8.70e-46 157
Msa0170210 AT2G32460.1 62.037 108 41 0 8 115 14 121 3.68e-45 158
Msa0170210 AT3G27810.1 54.198 131 60 0 12 142 20 150 4.13e-45 151
Msa0170210 AT2G32460.2 62.857 105 39 0 11 115 5 109 7.17e-45 157
Msa0170210 AT3G27920.1 57.798 109 46 0 8 116 10 118 1.57e-44 150
Msa0170210 AT3G28470.1 48.485 165 67 3 1 149 1 163 1.65e-44 152
Msa0170210 AT1G18710.1 61.111 108 42 0 11 118 11 118 1.87e-44 151
Msa0170210 AT3G24310.1 59.504 121 46 2 11 128 17 137 2.42e-44 150
Msa0170210 AT1G68320.1 53.191 141 58 2 12 144 19 159 3.84e-44 150
Msa0170210 AT5G55020.1 61.682 107 41 0 12 118 26 132 5.43e-44 155
Msa0170210 AT3G30210.1 39.604 202 108 3 11 198 26 227 6.35e-44 150
Msa0170210 AT3G01530.1 47.682 151 75 2 12 162 25 171 1.10e-43 147
Msa0170210 AT5G52600.1 55.085 118 53 0 12 129 12 129 1.94e-43 146
Msa0170210 AT5G40350.1 60.952 105 41 0 12 116 17 121 3.10e-43 146
Msa0170210 AT5G06100.1 60.000 105 42 0 11 115 31 135 3.14e-43 152
Msa0170210 AT4G13480.1 59.292 113 46 0 13 125 7 119 3.39e-43 147
Msa0170210 AT5G06100.5 60.000 105 42 0 11 115 31 135 1.27e-42 152
Msa0170210 AT5G06100.2 60.000 105 42 0 11 115 31 135 1.27e-42 152
Msa0170210 AT5G06100.3 60.000 105 42 0 11 115 31 135 1.27e-42 152
Msa0170210 AT5G06100.4 60.000 105 42 0 11 115 31 135 1.27e-42 152
Msa0170210 AT5G12870.1 62.857 105 39 0 12 116 18 122 1.50e-42 146
Msa0170210 AT3G08500.1 62.857 105 39 0 12 116 30 134 5.90e-42 147
Msa0170210 AT4G26930.1 59.223 103 42 0 12 114 19 121 7.55e-42 147
Msa0170210 AT2G26960.1 57.547 106 45 0 9 114 17 122 1.08e-41 148
Msa0170210 AT3G48920.1 57.018 114 49 0 13 126 19 132 2.21e-41 143
Msa0170210 AT1G25340.1 58.333 108 45 0 13 120 19 126 5.60e-41 142
Msa0170210 AT3G11440.2 56.731 104 45 0 12 115 41 144 1.56e-40 145
Msa0170210 AT5G52260.1 57.143 119 51 0 9 127 9 127 3.51e-40 140
Msa0170210 AT3G11440.3 56.731 104 45 0 12 115 41 144 5.08e-40 145
Msa0170210 AT3G11440.4 56.731 104 45 0 12 115 41 144 5.08e-40 145
Msa0170210 AT3G11440.1 56.731 104 45 0 12 115 41 144 5.08e-40 145
Msa0170210 AT4G25560.1 63.107 103 38 0 13 115 11 113 5.43e-40 140
Msa0170210 AT5G49620.1 49.367 158 71 3 8 158 22 177 7.07e-40 140
Msa0170210 AT1G48000.1 60.194 103 41 0 12 114 32 134 1.12e-39 138
Msa0170210 AT2G47190.1 55.556 108 48 0 8 115 16 123 1.24e-39 139
Msa0170210 AT1G66370.1 50.806 124 58 1 11 131 7 130 2.48e-39 137
Msa0170210 AT3G23250.2 41.026 234 94 8 58 257 1 224 2.77e-39 136
Msa0170210 AT3G06490.1 59.459 111 45 0 8 118 15 125 2.24e-38 137
Msa0170210 AT3G46130.1 51.261 119 53 1 11 129 8 121 1.34e-37 133
Msa0170210 AT5G59780.3 51.282 117 52 1 13 129 9 120 6.10e-37 130
Msa0170210 AT1G25340.2 55.556 108 43 1 13 120 19 121 1.06e-36 131
Msa0170210 AT1G66380.1 57.143 105 45 0 11 115 7 111 1.83e-36 126
Msa0170210 AT1G25340.3 55.556 108 43 1 13 120 19 121 1.84e-36 131
Msa0170210 AT3G53200.1 55.963 109 48 0 12 120 9 117 3.88e-36 129
Msa0170210 AT5G49620.2 45.349 172 71 4 8 158 22 191 4.98e-36 130
Msa0170210 AT1G66390.1 57.143 105 45 0 11 115 7 111 2.93e-35 127
Msa0170210 AT1G56650.1 56.190 105 46 0 11 115 7 111 3.35e-35 126
Msa0170210 AT5G35550.2 36.538 208 109 4 39 234 44 240 4.46e-35 126
Msa0170210 AT5G14750.3 58.065 93 34 1 38 125 3 95 5.71e-35 124
Msa0170210 AT3G12820.2 75.714 70 17 0 47 116 1 70 1.82e-34 123
Msa0170210 AT5G26660.2 75.000 72 18 0 45 116 14 85 8.21e-33 122
Msa0170210 AT3G47600.2 69.737 76 23 0 45 120 39 114 2.99e-31 118
Msa0170210 AT3G27810.2 55.102 98 44 0 45 142 4 101 9.68e-31 113
Msa0170210 AT3G60460.1 44.954 109 59 1 7 114 6 114 3.46e-30 115
Msa0170210 AT2G26950.1 47.525 101 53 0 9 109 13 113 1.06e-29 115
Msa0170210 AT5G11510.5 30.916 262 138 6 12 243 79 327 8.73e-29 115
Msa0170210 AT3G46130.3 59.302 86 30 1 44 129 9 89 8.92e-29 109
Msa0170210 AT5G40350.2 65.278 72 25 0 45 116 5 76 1.09e-28 107
Msa0170210 AT5G11510.2 30.916 262 138 6 12 243 79 327 1.10e-28 114
Msa0170210 AT2G23290.1 52.427 103 46 2 14 115 13 113 1.66e-28 110
Msa0170210 AT5G11510.3 30.916 262 138 6 12 243 79 327 1.69e-28 114
Msa0170210 AT5G11510.1 30.916 262 138 6 12 243 79 327 1.69e-28 114
Msa0170210 AT5G11510.4 30.916 262 138 6 12 243 79 327 1.69e-28 114
Msa0170210 AT4G37260.1 37.647 170 95 3 5 165 4 171 1.69e-28 110
Msa0170210 AT3G46130.4 60.000 85 29 1 45 129 20 99 2.28e-28 108
Msa0170210 AT5G59780.2 60.000 85 29 1 45 129 20 99 2.64e-28 107
Msa0170210 AT3G53200.2 61.842 76 29 0 45 120 9 84 2.77e-27 104
Msa0170210 AT1G69560.1 43.411 129 67 3 9 133 102 228 6.06e-27 107
Msa0170210 AT1G69560.2 43.411 129 67 3 9 133 118 244 7.60e-27 107
Msa0170210 AT3G09230.1 38.095 147 78 3 14 152 55 196 8.57e-27 107
Msa0170210 AT1G17950.1 49.533 107 51 2 10 115 1 105 1.09e-26 104
Msa0170210 AT3G50060.1 43.066 137 69 4 14 144 6 139 2.46e-26 104
Msa0170210 AT1G22640.3 74.576 59 15 0 58 116 1 59 3.57e-26 102
Msa0170210 AT3G55730.1 49.057 106 45 2 14 115 56 156 6.45e-26 105
Msa0170210 AT1G73410.2 36.098 205 111 6 14 211 6 197 7.86e-26 100
Msa0170210 AT1G73410.1 35.577 208 113 6 14 215 6 198 8.54e-26 102
Msa0170210 AT5G02320.1 48.113 106 52 2 12 116 125 228 9.87e-26 105
Msa0170210 AT5G02320.1 34.906 106 63 3 10 112 71 173 3.28e-13 69.3
Msa0170210 AT5G02320.2 48.113 106 52 2 12 116 125 228 9.87e-26 105
Msa0170210 AT5G02320.2 34.906 106 63 3 10 112 71 173 3.28e-13 69.3
Msa0170210 AT5G02320.3 48.113 106 52 2 12 116 65 168 1.49e-25 105
Msa0170210 AT5G02320.3 34.906 106 63 3 10 112 11 113 5.41e-13 68.6
Msa0170210 AT1G26780.1 44.828 116 61 2 12 126 96 209 1.51e-25 102
Msa0170210 AT2G39880.1 49.057 106 45 2 14 115 50 150 1.64e-25 103
Msa0170210 AT1G26780.2 44.828 116 61 2 12 126 96 209 2.46e-25 103
Msa0170210 AT5G67300.1 48.544 103 50 2 14 115 6 106 3.93e-25 101
Msa0170210 AT1G66380.3 61.644 73 28 0 43 115 6 78 9.83e-25 95.1
Msa0170210 AT5G14750.4 60.294 68 27 0 58 125 1 68 1.24e-24 96.3
Msa0170210 AT5G14750.2 60.294 68 27 0 58 125 1 68 1.24e-24 96.3
Msa0170210 AT4G33450.1 41.803 122 63 3 3 123 13 127 1.40e-24 99.0
Msa0170210 AT3G09370.2 47.619 105 52 2 12 115 133 235 1.93e-24 102
Msa0170210 AT3G09370.2 35.849 106 66 2 14 118 83 187 1.38e-13 70.5
Msa0170210 AT3G09370.1 47.619 105 52 2 12 115 128 230 2.02e-24 102
Msa0170210 AT3G09370.1 35.849 106 66 2 14 118 78 182 1.48e-13 70.5
Msa0170210 AT3G09370.3 47.619 105 52 2 12 115 141 243 2.64e-24 101
Msa0170210 AT3G09370.3 35.849 106 66 2 14 118 91 195 1.51e-13 70.5
Msa0170210 AT3G27785.1 49.020 102 49 2 8 108 183 282 3.17e-24 100
Msa0170210 AT4G18770.1 39.831 118 68 2 8 124 211 326 6.95e-24 99.8
Msa0170210 AT3G29020.1 40.870 115 65 2 14 127 65 177 7.27e-24 96.7
Msa0170210 AT4G32730.5 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0170210 AT4G32730.5 34.259 108 65 3 14 118 35 139 1.16e-13 70.9
Msa0170210 AT4G32730.4 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0170210 AT4G32730.4 34.259 108 65 3 14 118 35 139 1.16e-13 70.9
Msa0170210 AT4G32730.3 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0170210 AT4G32730.3 34.259 108 65 3 14 118 35 139 1.16e-13 70.9
Msa0170210 AT4G32730.2 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0170210 AT4G32730.2 34.259 108 65 3 14 118 35 139 1.16e-13 70.9
Msa0170210 AT4G32730.1 43.925 107 57 2 12 117 85 189 1.17e-23 100
Msa0170210 AT4G32730.1 34.259 108 65 3 14 118 35 139 1.27e-13 70.9
Msa0170210 AT3G29020.2 40.870 115 65 2 14 127 67 179 1.38e-23 97.4
Msa0170210 AT5G58850.1 35.821 201 103 7 12 209 103 280 2.15e-23 98.6
Msa0170210 AT5G40360.1 37.984 129 66 3 12 140 156 270 4.69e-23 96.7
Msa0170210 AT1G71030.1 54.430 79 35 1 38 116 7 84 1.38e-22 92.4
Msa0170210 AT1G71030.2 59.091 66 27 0 51 116 5 70 1.66e-22 91.7
Msa0170210 AT5G11050.1 41.429 140 64 4 14 149 105 230 2.76e-22 95.5
Msa0170210 AT1G66380.2 51.220 82 40 0 11 92 7 88 4.36e-22 88.6
Msa0170210 AT1G18960.1 43.220 118 60 4 1 118 1 111 9.32e-22 92.4
Msa0170210 AT5G17800.1 38.525 122 71 2 14 135 93 210 1.42e-20 89.4
Msa0170210 AT2G37630.1 40.517 116 66 2 14 127 4 118 1.37e-19 87.4
Msa0170210 AT4G00540.2 35.542 166 94 4 12 165 101 265 2.07e-19 87.0
Msa0170210 AT4G00540.2 34.579 107 62 3 14 112 46 152 2.84e-12 66.2
Msa0170210 AT4G00540.1 35.542 166 94 4 12 165 99 263 2.71e-19 87.0
Msa0170210 AT4G00540.1 34.579 107 62 3 14 112 44 150 4.60e-12 65.9
Msa0170210 AT5G39700.1 41.667 96 55 1 15 110 57 151 1.08e-17 79.0
Msa0170210 AT2G25230.1 38.835 103 60 2 17 118 29 129 8.16e-17 77.8
Msa0170210 AT1G14350.2 38.095 126 67 3 17 132 28 152 1.82e-16 79.0
Msa0170210 AT1G14350.1 38.095 126 67 3 17 132 28 152 1.82e-16 79.0
Msa0170210 AT2G02820.3 40.404 99 58 1 17 115 33 130 8.01e-16 76.3
Msa0170210 AT2G02820.1 40.404 99 58 1 17 115 33 130 1.38e-15 76.3
Msa0170210 AT2G02820.2 40.404 99 58 1 17 115 33 130 1.42e-15 76.3
Msa0170210 AT4G25560.2 72.093 43 12 0 73 115 5 47 1.20e-14 71.2
Msa0170210 AT3G28910.2 58.000 50 21 0 78 127 2 51 6.54e-14 69.7
Msa0170210 AT5G59780.1 55.000 60 22 1 70 129 1 55 9.23e-14 67.8
Msa0170210 AT3G46130.2 55.000 60 22 1 70 129 1 55 1.01e-13 68.2
Msa0170210 AT5G40430.1 37.500 80 49 1 48 127 86 164 1.86e-13 68.6
Msa0170210 AT1G16490.2 47.561 82 40 2 78 158 13 92 6.22e-13 66.2
Msa0170210 AT1G74650.3 71.795 39 11 0 78 116 2 40 6.22e-12 64.3
Msa0170210 AT3G18100.1 35.417 96 61 1 13 108 545 639 9.31e-12 65.5
Msa0170210 AT3G18100.3 35.417 96 61 1 13 108 497 591 1.17e-11 65.1
Msa0170210 AT3G18100.4 35.417 96 61 1 13 108 384 478 1.20e-11 64.7
Msa0170210 AT3G18100.2 35.417 96 61 1 13 108 332 426 1.40e-11 64.7

Find 76 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTTAGTACATCATTTAT+TGG 0.195748 1_4:+54141147 None:intergenic
TTTATGGAAACAACAATATA+TGG 0.263309 1_4:+54144488 None:intergenic
AGGAGCTCTTACCATCTTTA+AGG 0.266856 1_4:+54144454 None:intergenic
AAATTTCCTCTCTTGATATC+TGG 0.299157 1_4:+54143145 None:intergenic
TCACTGCGACGTGGTAATTT+CGG 0.327636 1_4:-54141368 Msa0170210:three_prime_UTR
ATTTCATTGTCCGTTCTTCC+TGG 0.345249 1_4:+54142110 None:intergenic
AAATAGCCAACATATGTCTT+TGG 0.351037 1_4:-54144601 Msa0170210:five_prime_UTR
TTGCAAGTACCTGCTAGCTT+TGG 0.353121 1_4:+54144326 None:intergenic
TTTGGTATGATATATTCATT+AGG 0.362232 1_4:-54141671 Msa0170210:CDS
AAGTTTAGACGAGTTGGAAT+TGG 0.370901 1_4:-54141543 Msa0170210:three_prime_UTR
TGCAAGTACCTGCTAGCTTT+GGG 0.383184 1_4:+54144327 None:intergenic
TCTTTGTTTCCGAGTTTGTT+TGG 0.396013 1_4:+54142048 None:intergenic
CTCTCTGGAAGAATTTCATC+AGG 0.402583 1_4:+54141738 None:intergenic
TACTGATAGTGTACACTATT+CGG 0.410742 1_4:-54141488 Msa0170210:three_prime_UTR
AGCTCCTTGTTGTGAAAAGA+TGG 0.421034 1_4:-54144438 Msa0170210:CDS
ATTTCATTTGAGATTGTCAA+TGG 0.421450 1_4:+54141777 None:intergenic
TACATGAAATGCTTGGAAAC+AGG 0.426813 1_4:-54143090 Msa0170210:intron
ACTTTGTATTAGCCAAACTT+TGG 0.435910 1_4:+54141606 None:intergenic
ATATGTTGGCTATTTATCCT+TGG 0.441991 1_4:+54144609 None:intergenic
GTGAAAGACTACGGTTCAAT+TGG 0.443064 1_4:+54141387 None:intergenic
CAAACTCGGAAACAAAGAAA+AGG 0.446812 1_4:-54142043 Msa0170210:CDS
AGTTTAGACGAGTTGGAATT+GGG 0.446978 1_4:-54141542 Msa0170210:three_prime_UTR
AACTAAAAGTTTAGACGAGT+TGG 0.452020 1_4:-54141549 Msa0170210:three_prime_UTR
TAGATTACATATCATTAGCT+TGG 0.457665 1_4:+54141304 None:intergenic
TATAATTCTAACTTGGATGA+TGG 0.461037 1_4:-54141702 Msa0170210:CDS
TCATTTCCAAAGACATATGT+TGG 0.477151 1_4:+54144595 None:intergenic
TTGGTCAGAAGCAGCAGCAT+TGG 0.478820 1_4:-54141832 Msa0170210:CDS
ATTAAGCTACATGAAATGCT+TGG 0.489832 1_4:-54143097 Msa0170210:CDS
GTGGGAAAAGCTGCAGACTT+AGG 0.491225 1_4:-54143186 Msa0170210:CDS
TTCTCAGGCTTGTTAAGGTG+TGG 0.492781 1_4:-54143205 Msa0170210:intron
TGGGATTGAAGAGGGGTCCT+TGG 0.493355 1_4:-54144418 Msa0170210:CDS
TCAAATTTCGTTGCCAACGT+TGG 0.493914 1_4:+54141453 None:intergenic
TGTCACTATTGGTGAAAGAA+AGG 0.495083 1_4:-54141916 Msa0170210:CDS
TAATCTTCATGAGTACTCTC+TGG 0.500360 1_4:+54141723 None:intergenic
AATTATTATTTCTAGGTGGT+CGG 0.500708 1_4:-54142150 Msa0170210:intron
TTCTAACTTGGATGATGGCA+TGG 0.501664 1_4:-54141697 Msa0170210:CDS
TGTAATCTATCTATGCAAAG+AGG 0.503053 1_4:-54141290 Msa0170210:three_prime_UTR
CGTGCCCTCCCAAAGCTAGC+AGG 0.503173 1_4:-54144335 Msa0170210:intron
TGAAGATTATAATTCTAACT+TGG 0.504622 1_4:-54141709 Msa0170210:CDS
AAGTGAAGACATTGAGTCCA+TGG 0.505416 1_4:-54141886 Msa0170210:CDS
CGGTCTTTCAGAGCAGGCCT+CGG 0.512364 1_4:-54141517 Msa0170210:three_prime_UTR
TGGGTACGGTCTTTCAGAGC+AGG 0.513207 1_4:-54141523 Msa0170210:three_prime_UTR
TGAAAAGATGGGATTGAAGA+GGG 0.514577 1_4:-54144426 Msa0170210:CDS
TATGATATATTCATTAGGAC+TGG 0.514686 1_4:-54141666 Msa0170210:CDS
TCTCAGGCTTGTTAAGGTGT+GGG 0.520871 1_4:-54143204 Msa0170210:intron
GGAGGGCACGCCAATTGCCA+TGG 0.528545 1_4:+54144348 None:intergenic
AAACTCGGAAACAAAGAAAA+GGG 0.536700 1_4:-54142042 Msa0170210:CDS
AGACGAGTTGGAATTGGGTA+CGG 0.537867 1_4:-54141537 Msa0170210:three_prime_UTR
TTTGGAAATGAAGTTCAAGA+AGG 0.541677 1_4:-54144583 Msa0170210:five_prime_UTR
GTAAAGAGGTTCTCCAACGT+TGG 0.555477 1_4:-54141466 Msa0170210:three_prime_UTR
AAAACACAAGACCTTAAAGA+TGG 0.561637 1_4:-54144465 Msa0170210:exon
GTGTACACTATTCGGTAAAG+AGG 0.561941 1_4:-54141480 Msa0170210:three_prime_UTR
GAGGGGTCCTTGGTCTCTTG+AGG 0.562635 1_4:-54144408 Msa0170210:CDS
GGAAAACCCTCTCAAAACTC+AGG 0.565148 1_4:+54141627 None:intergenic
TACAGCCATTGTCTCCTCCA+TGG 0.567393 1_4:+54141869 None:intergenic
ATTTCATCAGGGTATTGAAG+TGG 0.575754 1_4:+54141750 None:intergenic
GCTCCTTGTTGTGAAAAGAT+GGG 0.580548 1_4:-54144437 Msa0170210:CDS
GTGAAAAGATGGGATTGAAG+AGG 0.580574 1_4:-54144427 Msa0170210:CDS
AAGTACCTGCTAGCTTTGGG+AGG 0.580693 1_4:+54144330 None:intergenic
TGAGTCCATGGAGGAGACAA+TGG 0.582281 1_4:-54141874 Msa0170210:CDS
AGCAAAATTACCAGGAAGAA+CGG 0.586442 1_4:-54142120 Msa0170210:CDS
AAATTTCACAAATGAAGAAG+AGG 0.588308 1_4:-54143128 Msa0170210:CDS
GGAAAAGCTGCAGACTTAGG+TGG 0.597620 1_4:-54143183 Msa0170210:CDS
GCAATTGCAGCAAAATTACC+AGG 0.598499 1_4:-54142128 Msa0170210:CDS
GTAATCTATCTATGCAAAGA+GGG 0.609277 1_4:-54141289 Msa0170210:three_prime_UTR
TGATGTACTAAATCAGTAAG+CGG 0.612627 1_4:-54141139 Msa0170210:three_prime_UTR
TCATCTTCCTCAAGAGACCA+AGG 0.622778 1_4:+54144401 None:intergenic
CACTATCAGTATGTGAGCCG+AGG 0.626853 1_4:+54141500 None:intergenic
CACGTCGCAGTGAAAGACTA+CGG 0.632008 1_4:+54141378 None:intergenic
GAAGCTAAACCAAACAAACT+CGG 0.632566 1_4:-54142057 Msa0170210:CDS
TTGAGACCAGATATCAAGAG+AGG 0.635887 1_4:-54143151 Msa0170210:CDS
AGTACCTGCTAGCTTTGGGA+GGG 0.642338 1_4:+54144331 None:intergenic
CGTAGTCTTTCACTGCGACG+TGG 0.659448 1_4:-54141377 Msa0170210:three_prime_UTR
TCTCTGGAAGAATTTCATCA+GGG 0.690572 1_4:+54141739 None:intergenic
GAAAAGATGGGATTGAAGAG+GGG 0.697832 1_4:-54144425 Msa0170210:CDS
TGAAGACATTGAGTCCATGG+AGG 0.737546 1_4:-54141883 Msa0170210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATTGATATGATT+TGG - chr1_4:54142475-54142494 Msa0170210:intron 10.0%
!! ATATTTATTTAAGTAAGAAA+TGG - chr1_4:54142796-54142815 Msa0170210:intron 10.0%
!!! TTAATTGAATTATTATTTCT+AGG - chr1_4:54143582-54143601 Msa0170210:intron 10.0%
!! TTTGTTAAAATATAGATAGA+TGG + chr1_4:54141440-54141459 None:intergenic 15.0%
!!! AAAATCTTTCAAGTTATATA+TGG - chr1_4:54141486-54141505 Msa0170210:three_prime_UTR 15.0%
!!! AAATCTTTCAAGTTATATAT+GGG - chr1_4:54141487-54141506 Msa0170210:three_prime_UTR 15.0%
!! AAATGTTAGATATATAAAAG+AGG - chr1_4:54141624-54141643 Msa0170210:exon 15.0%
!!! TTTTTTTTATCAATTTTCTC+AGG - chr1_4:54142519-54142538 Msa0170210:intron 15.0%
!! CAATCATGTAAATTAAAAAT+TGG + chr1_4:54142719-54142738 None:intergenic 15.0%
!!! AGTTTTTAAAGTAGAATTAA+AGG + chr1_4:54142980-54142999 None:intergenic 15.0%
!!! TTAATTCTACTTTAAAAACT+AGG - chr1_4:54142980-54142999 Msa0170210:intron 15.0%
!!! TTTTAGTTGTCAAAAAAATT+TGG + chr1_4:54144178-54144197 None:intergenic 15.0%
!! TTTATGGAAACAACAATATA+TGG + chr1_4:54141254-54141273 None:intergenic 20.0%
!!! AAATCTTTCAAGTAACATAT+AGG - chr1_4:54141459-54141478 Msa0170210:three_prime_UTR 20.0%
!! CACTAATGTAAACAAATTAA+TGG + chr1_4:54141533-54141552 None:intergenic 20.0%
!! GTAAATAACATGTAATATCA+GGG + chr1_4:54141902-54141921 None:intergenic 20.0%
!! TGTAAATAACATGTAATATC+AGG + chr1_4:54141903-54141922 None:intergenic 20.0%
!!! ATTGTATCCTTAAAATGTTT+TGG + chr1_4:54142111-54142130 None:intergenic 20.0%
!!! ATTTAAGTAAGAAATGGATT+TGG - chr1_4:54142802-54142821 Msa0170210:intron 20.0%
!! AATTAGAGAAAAAGAAAAGA+TGG + chr1_4:54142834-54142853 None:intergenic 20.0%
!! ATTGATAAACAAGATTAAAG+TGG - chr1_4:54142851-54142870 Msa0170210:intron 20.0%
!! GGAACAAAATTAAAATCAAA+AGG - chr1_4:54142913-54142932 Msa0170210:intron 20.0%
!! GTTGTGTATACTAAATATAA+TGG - chr1_4:54142935-54142954 Msa0170210:intron 20.0%
!! AGTGGTAATATAAAAAGTAA+AGG - chr1_4:54143024-54143043 Msa0170210:intron 20.0%
!! GATGGTACATAATTAATTAT+AGG + chr1_4:54143104-54143123 None:intergenic 20.0%
!!! TGTTTTGTATTATTTCATGA+TGG + chr1_4:54143122-54143141 None:intergenic 20.0%
!!! ATTGAATTATTATTTCTAGG+TGG - chr1_4:54143585-54143604 Msa0170210:intron 20.0%
!! ACAATGAAATAAAAAATGTG+TGG - chr1_4:54143642-54143661 Msa0170210:intron 20.0%
!! TGAAGATTATAATTCTAACT+TGG - chr1_4:54144030-54144049 Msa0170210:intron 20.0%
!! TTTGGTATGATATATTCATT+AGG - chr1_4:54144068-54144087 Msa0170210:intron 20.0%
!!! TTTTCTTTAATTAGGAGTTT+AGG - chr1_4:54144550-54144569 Msa0170210:five_prime_UTR 20.0%
!! TGATTTAGTACATCATTTAT+TGG + chr1_4:54144595-54144614 None:intergenic 20.0%
!!! TAAGGTCTTGTGTTTTTTTA+TGG + chr1_4:54141270-54141289 None:intergenic 25.0%
! TCATACTATCTAACATCTTA+AGG - chr1_4:54141651-54141670 Msa0170210:CDS 25.0%
!! ATCTAACATCTTAAGGTTTT+AGG - chr1_4:54141658-54141677 Msa0170210:CDS 25.0%
!! CACACGTTAATTCTAAAAAA+TGG + chr1_4:54141931-54141950 None:intergenic 25.0%
!! AATGTAGCCAAAACATTTTA+AGG - chr1_4:54142101-54142120 Msa0170210:CDS 25.0%
! TTGTTTGGTATAAAAGAAAG+TGG + chr1_4:54142181-54142200 None:intergenic 25.0%
! GTTAAGATTATTAGAGAGAT+TGG + chr1_4:54142328-54142347 None:intergenic 25.0%
! AAATTTCACAAATGAAGAAG+AGG - chr1_4:54142611-54142630 Msa0170210:intron 25.0%
!! ATAAACAGAACATGTTGATT+AGG + chr1_4:54142747-54142766 None:intergenic 25.0%
! ATAAACAAGATTAAAGTGGT+GGG - chr1_4:54142855-54142874 Msa0170210:intron 25.0%
! TTGACAATTCATAATGCATA+TGG + chr1_4:54142890-54142909 None:intergenic 25.0%
! ACATAGTTTAAATTCTCTCT+GGG - chr1_4:54143498-54143517 Msa0170210:intron 25.0%
!!! AATTATTATTTCTAGGTGGT+CGG - chr1_4:54143589-54143608 Msa0170210:intron 25.0%
!! ATTTCATTTGAGATTGTCAA+TGG + chr1_4:54143965-54143984 None:intergenic 25.0%
! TATAATTCTAACTTGGATGA+TGG - chr1_4:54144037-54144056 Msa0170210:intron 25.0%
! TATGATATATTCATTAGGAC+TGG - chr1_4:54144073-54144092 Msa0170210:intron 25.0%
! TAGATTACATATCATTAGCT+TGG + chr1_4:54144438-54144457 None:intergenic 25.0%
! ATATGTTGGCTATTTATCCT+TGG + chr1_4:54141133-54141152 None:intergenic 30.0%
AAATAGCCAACATATGTCTT+TGG - chr1_4:54141138-54141157 Msa0170210:three_prime_UTR 30.0%
TCATTTCCAAAGACATATGT+TGG + chr1_4:54141147-54141166 None:intergenic 30.0%
TTTGGAAATGAAGTTCAAGA+AGG - chr1_4:54141156-54141175 Msa0170210:three_prime_UTR 30.0%
AAAACACAAGACCTTAAAGA+TGG - chr1_4:54141274-54141293 Msa0170210:three_prime_UTR 30.0%
!! GTTTTTGGATGTAAGATGTA+AGG + chr1_4:54141367-54141386 None:intergenic 30.0%
ACATCTTACATCCAAAAACA+TGG - chr1_4:54141368-54141387 Msa0170210:three_prime_UTR 30.0%
!!! TGGTCATTTTTCCATAAAGT+TGG + chr1_4:54141873-54141892 None:intergenic 30.0%
! ATGTAATATCAGGGCTATTT+TGG + chr1_4:54141893-54141912 None:intergenic 30.0%
AAAGTGGAATAGAAAGTGAA+AGG + chr1_4:54142165-54142184 None:intergenic 30.0%
ATGAAGTTCATGGTACTTAA+TGG + chr1_4:54142421-54142440 None:intergenic 30.0%
AAATTTCCTCTCTTGATATC+TGG + chr1_4:54142597-54142616 None:intergenic 30.0%
ATTAAGCTACATGAAATGCT+TGG - chr1_4:54142642-54142661 Msa0170210:intron 30.0%
GATAAACAAGATTAAAGTGG+TGG - chr1_4:54142854-54142873 Msa0170210:intron 30.0%
TAAACAAGATTAAAGTGGTG+GGG - chr1_4:54142856-54142875 Msa0170210:intron 30.0%
TGCATTATGAATTGTCAACT+TGG - chr1_4:54142892-54142911 Msa0170210:intron 30.0%
TATGATTAAGTAGTCACTAG+TGG - chr1_4:54143143-54143162 Msa0170210:CDS 30.0%
GACATAGTTTAAATTCTCTC+TGG - chr1_4:54143497-54143516 Msa0170210:intron 30.0%
AAACTCGGAAACAAAGAAAA+GGG - chr1_4:54143697-54143716 Msa0170210:intron 30.0%
!! GAATCAGAACGTTTGATTTT+TGG + chr1_4:54143734-54143753 None:intergenic 30.0%
! GATTTTTCATCTGTCACTAT+TGG - chr1_4:54143812-54143831 Msa0170210:intron 30.0%
! CTGTAATTGATGAGAGTTTT+TGG - chr1_4:54143888-54143907 Msa0170210:intron 30.0%
ACTTTGTATTAGCCAAACTT+TGG + chr1_4:54144136-54144155 None:intergenic 30.0%
AACTAAAAGTTTAGACGAGT+TGG - chr1_4:54144190-54144209 Msa0170210:intron 30.0%
! TACTGATAGTGTACACTATT+CGG - chr1_4:54144251-54144270 Msa0170210:intron 30.0%
TGTAATCTATCTATGCAAAG+AGG - chr1_4:54144449-54144468 Msa0170210:CDS 30.0%
GTAATCTATCTATGCAAAGA+GGG - chr1_4:54144450-54144469 Msa0170210:exon 30.0%
TGATGTACTAAATCAGTAAG+CGG - chr1_4:54144600-54144619 Msa0170210:five_prime_UTR 30.0%
! AATCCCATCTTTTCACAACA+AGG + chr1_4:54141308-54141327 None:intergenic 35.0%
TGAAAAGATGGGATTGAAGA+GGG - chr1_4:54141313-54141332 Msa0170210:three_prime_UTR 35.0%
!!! AAGGTTTTAGGCAGAGATTT+AGG - chr1_4:54141670-54141689 Msa0170210:CDS 35.0%
!!! AGGTTTTAGGCAGAGATTTA+GGG - chr1_4:54141671-54141690 Msa0170210:CDS 35.0%
! TACAGTACTTTTCCACTGTT+TGG - chr1_4:54141753-54141772 Msa0170210:CDS 35.0%
!!! TGTGGAAAGTTTTTGAGTGT+GGG + chr1_4:54141821-54141840 None:intergenic 35.0%
AGGGAAATGAACCAACTTTA+TGG - chr1_4:54141859-54141878 Msa0170210:CDS 35.0%
!!! AGAGGATTGTTTTGGTTGTT+TGG + chr1_4:54142196-54142215 None:intergenic 35.0%
ATATGAGGAAAGAAAGAGTG+AGG + chr1_4:54142225-54142244 None:intergenic 35.0%
GAGTGAGGAAAGATTATATG+AGG + chr1_4:54142240-54142259 None:intergenic 35.0%
! AATGGTGCTAACTATAAGCT+GGG + chr1_4:54142403-54142422 None:intergenic 35.0%
! TAATGGTGCTAACTATAAGC+TGG + chr1_4:54142404-54142423 None:intergenic 35.0%
TTTGTGAGCTATGAAGTTCA+TGG + chr1_4:54142431-54142450 None:intergenic 35.0%
!!! CAATTTTCTCAGGCTTGTTA+AGG - chr1_4:54142529-54142548 Msa0170210:intron 35.0%
TACATGAAATGCTTGGAAAC+AGG - chr1_4:54142649-54142668 Msa0170210:intron 35.0%
TATATTACCACTTGCACCTA+AGG + chr1_4:54143016-54143035 None:intergenic 35.0%
AATCAATTTGATCCTTCACG+AGG - chr1_4:54143444-54143463 Msa0170210:intron 35.0%
AGCAAAATTACCAGGAAGAA+CGG - chr1_4:54143619-54143638 Msa0170210:intron 35.0%
GAAGCTAAACCAAACAAACT+CGG - chr1_4:54143682-54143701 Msa0170210:intron 35.0%
! TCTTTGTTTCCGAGTTTGTT+TGG + chr1_4:54143694-54143713 None:intergenic 35.0%
CAAACTCGGAAACAAAGAAA+AGG - chr1_4:54143696-54143715 Msa0170210:intron 35.0%
TGTCACTATTGGTGAAAGAA+AGG - chr1_4:54143823-54143842 Msa0170210:intron 35.0%
!! ATTTCATCAGGGTATTGAAG+TGG + chr1_4:54143992-54144011 None:intergenic 35.0%
! TCTCTGGAAGAATTTCATCA+GGG + chr1_4:54144003-54144022 None:intergenic 35.0%
TAATCTTCATGAGTACTCTC+TGG + chr1_4:54144019-54144038 None:intergenic 35.0%
! AAGTTTAGACGAGTTGGAAT+TGG - chr1_4:54144196-54144215 Msa0170210:intron 35.0%
! AGTTTAGACGAGTTGGAATT+GGG - chr1_4:54144197-54144216 Msa0170210:intron 35.0%
AGGAGCTCTTACCATCTTTA+AGG + chr1_4:54141288-54141307 None:intergenic 40.0%
! AGCTCCTTGTTGTGAAAAGA+TGG - chr1_4:54141301-54141320 Msa0170210:three_prime_UTR 40.0%
! GCTCCTTGTTGTGAAAAGAT+GGG - chr1_4:54141302-54141321 Msa0170210:three_prime_UTR 40.0%
GTGAAAAGATGGGATTGAAG+AGG - chr1_4:54141312-54141331 Msa0170210:three_prime_UTR 40.0%
GAAAAGATGGGATTGAAGAG+GGG - chr1_4:54141314-54141333 Msa0170210:three_prime_UTR 40.0%
TACATCCAAAAACATGGCCA+TGG - chr1_4:54141374-54141393 Msa0170210:three_prime_UTR 40.0%
! AATTGCCATGGCCATGTTTT+TGG + chr1_4:54141382-54141401 None:intergenic 40.0%
AAAAACATGGCCATGGCAAT+TGG - chr1_4:54141381-54141400 Msa0170210:three_prime_UTR 40.0%
! GTGAGTGATTTAGTTTCACC+TGG - chr1_4:54141587-54141606 Msa0170210:three_prime_UTR 40.0%
! ATTTTTCGCATTCAGAGTCC+AGG + chr1_4:54141608-54141627 None:intergenic 40.0%
TTTGGATCCATGGAAACAGA+AGG - chr1_4:54141698-54141717 Msa0170210:CDS 40.0%
TTGGATCCATGGAAACAGAA+GGG - chr1_4:54141699-54141718 Msa0170210:CDS 40.0%
TTCTTTCCCTTCTGTTTCCA+TGG + chr1_4:54141708-54141727 None:intergenic 40.0%
TGGAAACAGAAGGGAAAGAA+AGG - chr1_4:54141708-54141727 Msa0170210:CDS 40.0%
GGAAACAGAAGGGAAAGAAA+GGG - chr1_4:54141709-54141728 Msa0170210:CDS 40.0%
TGTTTGGCAGGACAAAGAAA+GGG - chr1_4:54141769-54141788 Msa0170210:CDS 40.0%
! GGTAGGGAAAGAAAGTTTTG+AGG - chr1_4:54141790-54141809 Msa0170210:CDS 40.0%
!!! AGGGAAAGAAAGTTTTGAGG+TGG - chr1_4:54141793-54141812 Msa0170210:CDS 40.0%
!!! GGGAAAGAAAGTTTTGAGGT+GGG - chr1_4:54141794-54141813 Msa0170210:CDS 40.0%
!!! CTGTGGAAAGTTTTTGAGTG+TGG + chr1_4:54141822-54141841 None:intergenic 40.0%
AAAAACTTTCCACAGCTGCA+AGG - chr1_4:54141827-54141846 Msa0170210:CDS 40.0%
! GGAAAGTGAGAGGATTGTTT+TGG + chr1_4:54142204-54142223 None:intergenic 40.0%
GTGAAAGGAAAGAAAGAGTG+AGG + chr1_4:54142255-54142274 None:intergenic 40.0%
GGATGCTCAAAGAAAGTGAA+AGG + chr1_4:54142270-54142289 None:intergenic 40.0%
! ATGGTGCTAACTATAAGCTG+GGG + chr1_4:54142402-54142421 None:intergenic 40.0%
TTGAGACCAGATATCAAGAG+AGG - chr1_4:54142588-54142607 Msa0170210:intron 40.0%
!!! CGTCTTATGGGTGCATTTTT+TGG + chr1_4:54143064-54143083 None:intergenic 40.0%
AGCTTCATGTGTCGTCTTAT+GGG + chr1_4:54143076-54143095 None:intergenic 40.0%
TAGCTTCATGTGTCGTCTTA+TGG + chr1_4:54143077-54143096 None:intergenic 40.0%
TTAGATCTGTGATGTGCCTT+AGG - chr1_4:54143255-54143274 Msa0170210:intron 40.0%
TAGATCTGTGATGTGCCTTA+GGG - chr1_4:54143256-54143275 Msa0170210:intron 40.0%
GCGAATCTCGTGGAAATATT+TGG - chr1_4:54143391-54143410 Msa0170210:intron 40.0%
GCAATTGCAGCAAAATTACC+AGG - chr1_4:54143611-54143630 Msa0170210:intron 40.0%
ATTTCATTGTCCGTTCTTCC+TGG + chr1_4:54143632-54143651 None:intergenic 40.0%
AAGTGAAGACATTGAGTCCA+TGG - chr1_4:54143853-54143872 Msa0170210:intron 40.0%
! CTCTCTGGAAGAATTTCATC+AGG + chr1_4:54144004-54144023 None:intergenic 40.0%
! TTCTAACTTGGATGATGGCA+TGG - chr1_4:54144042-54144061 Msa0170210:intron 40.0%
!! TGGATGATGGCATGGATTTT+TGG - chr1_4:54144050-54144069 Msa0170210:intron 40.0%
!!! AGAATTGCCTGAGTTTTGAG+AGG - chr1_4:54144105-54144124 Msa0170210:intron 40.0%
!!! GAATTGCCTGAGTTTTGAGA+GGG - chr1_4:54144106-54144125 Msa0170210:intron 40.0%
! TGAGAGGGTTTTCCAAAGTT+TGG - chr1_4:54144121-54144140 Msa0170210:intron 40.0%
GTGTACACTATTCGGTAAAG+AGG - chr1_4:54144259-54144278 Msa0170210:intron 40.0%
TCAAATTTCGTTGCCAACGT+TGG + chr1_4:54144289-54144308 None:intergenic 40.0%
GTGAAAGACTACGGTTCAAT+TGG + chr1_4:54144355-54144374 None:intergenic 40.0%
TCATCTTCCTCAAGAGACCA+AGG + chr1_4:54141341-54141360 None:intergenic 45.0%
!! TGCAAGTACCTGCTAGCTTT+GGG + chr1_4:54141415-54141434 None:intergenic 45.0%
! TTGCAAGTACCTGCTAGCTT+TGG + chr1_4:54141416-54141435 None:intergenic 45.0%
! GCAGAGATTTAGGGTACGTT+TGG - chr1_4:54141680-54141699 Msa0170210:CDS 45.0%
TTAGGGTACGTTTGGATCCA+TGG - chr1_4:54141688-54141707 Msa0170210:CDS 45.0%
CAGAAGGGAAAGAAAGGGTA+TGG - chr1_4:54141714-54141733 Msa0170210:CDS 45.0%
GGGTATGGAAAGAAAGTGAG+TGG - chr1_4:54141729-54141748 Msa0170210:CDS 45.0%
! GTACTTTTCCACTGTTTGGC+AGG - chr1_4:54141757-54141776 Msa0170210:CDS 45.0%
TTCTTTGTCCTGCCAAACAG+TGG + chr1_4:54141768-54141787 None:intergenic 45.0%
CTGTTTGGCAGGACAAAGAA+AGG - chr1_4:54141768-54141787 Msa0170210:CDS 45.0%
GAAAGAGTGAGGAAAGTGAG+AGG + chr1_4:54142214-54142233 None:intergenic 45.0%
GAAGACACTAAGGGTCTGTT+TGG + chr1_4:54142291-54142310 None:intergenic 45.0%
CACCAAGAGGAAGACACTAA+GGG + chr1_4:54142300-54142319 None:intergenic 45.0%
!! TTCTCAGGCTTGTTAAGGTG+TGG - chr1_4:54142534-54142553 Msa0170210:intron 45.0%
!! TCTCAGGCTTGTTAAGGTGT+GGG - chr1_4:54142535-54142554 Msa0170210:intron 45.0%
! AGATTAAAGTGGTGGGGACT+AGG - chr1_4:54142862-54142881 Msa0170210:intron 45.0%
! GATTAAAGTGGTGGGGACTA+GGG - chr1_4:54142863-54142882 Msa0170210:intron 45.0%
ACTAGGTATGATCCCACCTT+AGG - chr1_4:54142997-54143016 Msa0170210:intron 45.0%
TTACCACTTGCACCTAAGGT+GGG + chr1_4:54143012-54143031 None:intergenic 45.0%
ATTACCACTTGCACCTAAGG+TGG + chr1_4:54143013-54143032 None:intergenic 45.0%
AAAACTGAACGCGAATCTCG+TGG - chr1_4:54143381-54143400 Msa0170210:intron 45.0%
ACAAGTGTAACACCTCGTGA+AGG + chr1_4:54143459-54143478 None:intergenic 45.0%
TGAAGACATTGAGTCCATGG+AGG - chr1_4:54143856-54143875 Msa0170210:intron 45.0%
GGAAAACCCTCTCAAAACTC+AGG + chr1_4:54144115-54144134 None:intergenic 45.0%
! AGACGAGTTGGAATTGGGTA+CGG - chr1_4:54144202-54144221 Msa0170210:intron 45.0%
GTAAAGAGGTTCTCCAACGT+TGG - chr1_4:54144273-54144292 Msa0170210:intron 45.0%
TCACTGCGACGTGGTAATTT+CGG - chr1_4:54144371-54144390 Msa0170210:CDS 45.0%
!!! TTTTTATTTTTTCTTTAATT+AGG - chr1_4:54144542-54144561 Msa0170210:five_prime_UTR 5.0%
!! AGTACCTGCTAGCTTTGGGA+GGG + chr1_4:54141411-54141430 None:intergenic 50.0%
!! AAGTACCTGCTAGCTTTGGG+AGG + chr1_4:54141412-54141431 None:intergenic 50.0%
TGGCAGGACAAAGAAAGGGT+AGG - chr1_4:54141773-54141792 Msa0170210:CDS 50.0%
GGCAGGACAAAGAAAGGGTA+GGG - chr1_4:54141774-54141793 Msa0170210:CDS 50.0%
ACTTTCCACAGCTGCAAGGA+CGG - chr1_4:54141831-54141850 Msa0170210:CDS 50.0%
AGCTGCAAGGACGGAAACAA+GGG - chr1_4:54141840-54141859 Msa0170210:CDS 50.0%
GACCCTTAGTGTCTTCCTCT+TGG - chr1_4:54142295-54142314 Msa0170210:intron 50.0%
GCACCAAGAGGAAGACACTA+AGG + chr1_4:54142301-54142320 None:intergenic 50.0%
! GAGATTGGTGAAGCACCAAG+AGG + chr1_4:54142313-54142332 None:intergenic 50.0%
GTGGGAAAAGCTGCAGACTT+AGG - chr1_4:54142553-54142572 Msa0170210:intron 50.0%
GGAAAAGCTGCAGACTTAGG+TGG - chr1_4:54142556-54142575 Msa0170210:intron 50.0%
ATCTGTGATGTGCCTTAGGG+TGG - chr1_4:54143259-54143278 Msa0170210:intron 50.0%
TGCCTTAGGGTGGCAGTTTA+TGG - chr1_4:54143269-54143288 Msa0170210:intron 50.0%
TGCCATAAACTGCCACCCTA+AGG + chr1_4:54143274-54143293 None:intergenic 50.0%
TGAGTCCATGGAGGAGACAA+TGG - chr1_4:54143865-54143884 Msa0170210:intron 50.0%
TACAGCCATTGTCTCCTCCA+TGG + chr1_4:54143873-54143892 None:intergenic 50.0%
TTGGTCAGAAGCAGCAGCAT+TGG - chr1_4:54143907-54143926 Msa0170210:intron 50.0%
CACTATCAGTATGTGAGCCG+AGG + chr1_4:54144242-54144261 None:intergenic 50.0%
CACGTCGCAGTGAAAGACTA+CGG + chr1_4:54144364-54144383 None:intergenic 50.0%
TGGGATTGAAGAGGGGTCCT+TGG - chr1_4:54141321-54141340 Msa0170210:three_prime_UTR 55.0%
TGTTTCCGTCCTTGCAGCTG+TGG + chr1_4:54141839-54141858 None:intergenic 55.0%
CAGCTGCAAGGACGGAAACA+AGG - chr1_4:54141839-54141858 Msa0170210:CDS 55.0%
GATCCCACCTTAGGTGCAAG+TGG - chr1_4:54143006-54143025 Msa0170210:intron 55.0%
TGGGTACGGTCTTTCAGAGC+AGG - chr1_4:54144216-54144235 Msa0170210:intron 55.0%
CGTAGTCTTTCACTGCGACG+TGG - chr1_4:54144362-54144381 Msa0170210:CDS 55.0%
GAGGGGTCCTTGGTCTCTTG+AGG - chr1_4:54141331-54141350 Msa0170210:three_prime_UTR 60.0%
CGGTCTTTCAGAGCAGGCCT+CGG - chr1_4:54144222-54144241 Msa0170210:intron 60.0%
! GGAGGGCACGCCAATTGCCA+TGG + chr1_4:54141394-54141413 None:intergenic 65.0%
CGTGCCCTCCCAAAGCTAGC+AGG - chr1_4:54141404-54141423 Msa0170210:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54141122 54144639 54141122 ID=Msa0170210;Name=Msa0170210
chr1_4 mRNA 54141122 54144639 54141122 ID=Msa0170210-mRNA-1;Parent=Msa0170210;Name=Msa0170210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=171|1|1|1|1|1|3|516|260
chr1_4 exon 54141122 54142157 54141122 ID=Msa0170210-mRNA-1:exon:16164;Parent=Msa0170210-mRNA-1
chr1_4 exon 54143091 54143220 54143091 ID=Msa0170210-mRNA-1:exon:16163;Parent=Msa0170210-mRNA-1
chr1_4 exon 54144336 54144639 54144336 ID=Msa0170210-mRNA-1:exon:16162;Parent=Msa0170210-mRNA-1
chr1_4 five_prime_UTR 54144469 54144639 54144469 ID=Msa0170210-mRNA-1:five_prime_utr;Parent=Msa0170210-mRNA-1
chr1_4 CDS 54144336 54144468 54144336 ID=Msa0170210-mRNA-1:cds;Parent=Msa0170210-mRNA-1
chr1_4 CDS 54143091 54143220 54143091 ID=Msa0170210-mRNA-1:cds;Parent=Msa0170210-mRNA-1
chr1_4 CDS 54141638 54142157 54141638 ID=Msa0170210-mRNA-1:cds;Parent=Msa0170210-mRNA-1
chr1_4 three_prime_UTR 54141122 54141637 54141122 ID=Msa0170210-mRNA-1:three_prime_utr;Parent=Msa0170210-mRNA-1
Gene Sequence

>Msa0170210

ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAGGGGTCCTTGGTCTCTTGAGGAAGATGAAATCCTTACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGGAAAAGCTGCAGACTTAGGTGGATTAACTATTTGAGACCAGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTACATGAAATGCTTGGAAACAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAAGCTAAACCAAACAAACTCGGAAACAAAGAAAAGGGTGATCTCAAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACACAATCAGAATCAGCATCTGCATGCACTACAAGTTCTAGTGATTTTTCATCTGTCACTATTGGTGAAAGAAAGGATATAAAAAGTGAAGACATTGAGTCCATGGAGGAGACAATGGCTGTAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTTCTCCATTGACAATCTCAAATGAAATGTTGCCACTTCAATACCCTGATGAAATTCTTCCAGAGAGTACTCATGAAGATTATAATTCTAACTTGGATGATGGCATGGATTTTTGGTATGATATATTCATTAGGACTGGAGATCAAATAGAATTGCCTGAGTTTTGA
Protein sequence

>Msa0170210

MVRAPCCEKMGLKRGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLNQTNSETKKRVISKPKIKRSDSNSSTITQSESASACTTSSSDFSSVTIGERKDIKSEDIESMEETMAVIDESFWSEAAALDETSTDMKSSSPLTISNEMLPLQYPDEILPESTHEDYNSNLDDGMDFWYDIFIRTGDQIELPEF*