AlfalfaGEDB | Msa0170210

M. sativa cultivar zhongmu-4 / Msa0170210

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170210	XP_013468731.1	97.308	260	5	2	1	260	1	258	0.0	519

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170210	sp\|Q9SJX8\|MYB14_ARATH	51.504	266	106	6	1	260	1	249	1.28e-80	245

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170210	I3SI81	97.308	260	5	2	1	260	1	258	0.0	519

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TFs/TRs:

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Gene ID	Type	Classification
Msa0170210	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030160	Msa0170210	0.939308	1.582122e-99	-8.615850e-47
Msa0077700	Msa0170210	0.862476	4.934017e-64	-8.615850e-47
Msa0079110	Msa0170210	0.818138	2.292380e-52	-8.615850e-47
Msa0092410	Msa0170210	0.817693	2.889176e-52	-8.615850e-47
Msa0103250	Msa0170210	0.807471	4.973967e-50	-8.615850e-47
Msa0104720	Msa0170210	0.812307	4.528393e-51	-8.615850e-47
Msa0106710	Msa0170210	0.804916	1.716535e-49	-8.615850e-47
Msa0108410	Msa0170210	0.840053	1.095842e-57	-8.615850e-47
Msa0112270	Msa0170210	0.810529	1.101619e-50	-8.615850e-47
Msa0125650	Msa0170210	0.852037	6.004334e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170210	MtrunA17_Chr1g0187761	97.308	260	5	2	1	260	1	258	0.0	519
Msa0170210	MtrunA17_Chr1g0167691	67.910	268	65	9	1	260	1	255	1.49e-111	321
Msa0170210	MtrunA17_Chr1g0167661	62.642	265	83	5	1	260	1	254	2.17e-106	308
Msa0170210	MtrunA17_Chr7g0261281	45.070	284	126	6	1	260	1	278	9.58e-77	234
Msa0170210	MtrunA17_Chr7g0274581	46.032	252	88	5	1	252	1	204	1.41e-72	221
Msa0170210	MtrunA17_Chr1g0203411	64.430	149	53	0	1	149	1	149	3.11e-67	210
Msa0170210	MtrunA17_Chr4g0039971	69.925	133	37	1	1	133	2	131	7.74e-65	206
Msa0170210	MtrunA17_Chr3g0115821	72.881	118	32	0	1	118	1	118	1.50e-62	199
Msa0170210	MtrunA17_Chr8g0349261	63.087	149	51	3	1	145	1	149	5.75e-62	197
Msa0170210	MtrunA17_Chr4g0048511	74.359	117	29	1	1	116	1	117	2.66e-61	197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0170210	AT2G31180.1	51.504	266	106	6	1	260	1	249	1.30e-81	245
Msa0170210	AT3G23250.1	49.141	291	104	8	1	257	1	281	5.35e-81	245
Msa0170210	AT1G06180.1	59.901	202	66	4	1	197	1	192	1.09e-78	238
Msa0170210	AT4G21440.1	75.862	116	28	0	1	116	1	116	1.21e-64	206
Msa0170210	AT3G61250.1	74.138	116	30	0	1	116	1	116	1.75e-64	203
Msa0170210	AT1G79180.1	76.923	117	27	0	3	119	5	121	2.54e-64	203
Msa0170210	AT1G16490.1	61.146	157	60	1	3	158	5	161	3.80e-64	202
Msa0170210	AT5G16770.4	73.729	118	31	0	1	118	1	118	6.12e-63	200
Msa0170210	AT5G16770.3	73.729	118	31	0	1	118	1	118	6.12e-63	200
Msa0170210	AT5G16770.1	73.729	118	31	0	1	118	1	118	1.35e-62	200

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Find 76 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAAGACCTTAAAGA+TGG	0.561637	1_4:-54144465	Msa0170210:exon
AAACTCGGAAACAAAGAAAA+GGG	0.536700	1_4:-54142042	Msa0170210:CDS
AAATAGCCAACATATGTCTT+TGG	0.351037	1_4:-54144601	Msa0170210:five_prime_UTR
AAATTTCACAAATGAAGAAG+AGG	0.588308	1_4:-54143128	Msa0170210:CDS
AAATTTCCTCTCTTGATATC+TGG	0.299157	1_4:+54143145	None:intergenic
AACTAAAAGTTTAGACGAGT+TGG	0.452020	1_4:-54141549	Msa0170210:three_prime_UTR
AAGTACCTGCTAGCTTTGGG+AGG	0.580693	1_4:+54144330	None:intergenic
AAGTGAAGACATTGAGTCCA+TGG	0.505416	1_4:-54141886	Msa0170210:CDS
AAGTTTAGACGAGTTGGAAT+TGG	0.370901	1_4:-54141543	Msa0170210:three_prime_UTR
AATTATTATTTCTAGGTGGT+CGG	0.500708	1_4:-54142150	Msa0170210:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGCCAACATATGTCTT+TGG	-	chr1_4:54141138-54141157	Msa0170210:three_prime_UTR	30.0%
TCATTTCCAAAGACATATGT+TGG	+	chr1_4:54141147-54141166	None:intergenic	30.0%
TTTGGAAATGAAGTTCAAGA+AGG	-	chr1_4:54141156-54141175	Msa0170210:three_prime_UTR	30.0%
AAAACACAAGACCTTAAAGA+TGG	-	chr1_4:54141274-54141293	Msa0170210:three_prime_UTR	30.0%
ACATCTTACATCCAAAAACA+TGG	-	chr1_4:54141368-54141387	Msa0170210:three_prime_UTR	30.0%
AAAGTGGAATAGAAAGTGAA+AGG	+	chr1_4:54142165-54142184	None:intergenic	30.0%
ATGAAGTTCATGGTACTTAA+TGG	+	chr1_4:54142421-54142440	None:intergenic	30.0%
AAATTTCCTCTCTTGATATC+TGG	+	chr1_4:54142597-54142616	None:intergenic	30.0%
ATTAAGCTACATGAAATGCT+TGG	-	chr1_4:54142642-54142661	Msa0170210:intron	30.0%
GATAAACAAGATTAAAGTGG+TGG	-	chr1_4:54142854-54142873	Msa0170210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	54141122	54144639	54141122	ID=Msa0170210;Name=Msa0170210
chr1_4	mRNA	54141122	54144639	54141122	ID=Msa0170210-mRNA-1;Parent=Msa0170210;Name=Msa0170210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=171\|1\|1\|1\|1\|1\|3\|516\|260
chr1_4	exon	54141122	54142157	54141122	ID=Msa0170210-mRNA-1:exon:16164;Parent=Msa0170210-mRNA-1
chr1_4	exon	54143091	54143220	54143091	ID=Msa0170210-mRNA-1:exon:16163;Parent=Msa0170210-mRNA-1
chr1_4	exon	54144336	54144639	54144336	ID=Msa0170210-mRNA-1:exon:16162;Parent=Msa0170210-mRNA-1
chr1_4	five_prime_UTR	54144469	54144639	54144469	ID=Msa0170210-mRNA-1:five_prime_utr;Parent=Msa0170210-mRNA-1
chr1_4	CDS	54144336	54144468	54144336	ID=Msa0170210-mRNA-1:cds;Parent=Msa0170210-mRNA-1
chr1_4	CDS	54143091	54143220	54143091	ID=Msa0170210-mRNA-1:cds;Parent=Msa0170210-mRNA-1
chr1_4	CDS	54141638	54142157	54141638	ID=Msa0170210-mRNA-1:cds;Parent=Msa0170210-mRNA-1
chr1_4	three_prime_UTR	54141122	54141637	54141122	ID=Msa0170210-mRNA-1:three_prime_utr;Parent=Msa0170210-mRNA-1

Gene Sequence

>Msa0170210

ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAGGGGTCCTTGGTCTCTTGAGGAAGATGAAATCCTTACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGGAAAAGCTGCAGACTTAGGTGGATTAACTATTTGAGACCAGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTACATGAAATGCTTGGAAACAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAAGCTAAACCAAACAAACTCGGAAACAAAGAAAAGGGTGATCTCAAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACACAATCAGAATCAGCATCTGCATGCACTACAAGTTCTAGTGATTTTTCATCTGTCACTATTGGTGAAAGAAAGGATATAAAAAGTGAAGACATTGAGTCCATGGAGGAGACAATGGCTGTAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTTCTCCATTGACAATCTCAAATGAAATGTTGCCACTTCAATACCCTGATGAAATTCTTCCAGAGAGTACTCATGAAGATTATAATTCTAACTTGGATGATGGCATGGATTTTTGGTATGATATATTCATTAGGACTGGAGATCAAATAGAATTGCCTGAGTTTTGA

Protein sequence

>Msa0170210

MVRAPCCEKMGLKRGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLNQTNSETKKRVISKPKIKRSDSNSSTITQSESASACTTSSSDFSSVTIGERKDIKSEDIESMEETMAVIDESFWSEAAALDETSTDMKSSSPLTISNEMLPLQYPDEILPESTHEDYNSNLDDGMDFWYDIFIRTGDQIELPEF*