AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129550 MtrunA17_Chr7g0274621 97.765 358 8 0 1 358 1 358 0.0 711
Msa1129550 MtrunA17_Chr1g0190251 82.081 346 62 0 1 346 67 412 0.0 576
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129550 AT1G08630.2 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129550 AT1G08630.3 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129550 AT1G08630.1 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129550 AT1G08630.4 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129550 AT1G08630.6 73.639 349 92 0 1 349 1 349 0.0 551
Msa1129550 AT3G04520.3 74.419 344 88 0 4 347 8 351 0.0 536
Msa1129550 AT3G04520.1 74.419 344 88 0 4 347 8 351 0.0 536
Msa1129550 AT3G04520.2 74.419 344 87 1 4 347 8 350 0.0 531
Msa1129550 AT1G08630.5 71.633 349 85 1 1 349 1 335 0.0 523
Msa1129550 AT1G08630.7 73.636 330 87 0 20 349 1 330 0.0 521

Find 97 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAACAATGAAGTGCTTTA+TGG 0.169459 7_3:-81527207 Msa1129550:three_prime_UTR
ATACACTTTGTCGTGCTTTC+AGG 0.173516 7_3:-81527516 Msa1129550:intron
CTACAAAATACTTACAATAT+TGG 0.205905 7_3:+81527893 None:intergenic
TCATTATTTCTAACTGTTCT+TGG 0.215838 7_3:+81529864 None:intergenic
TTCAGTTGTGTGAATAAGTA+TGG 0.256450 7_3:-81527317 Msa1129550:three_prime_UTR
GCACATCGCTATCTGATATT+TGG 0.274562 7_3:+81527540 None:intergenic
TTTGTAACACAAATAAAATA+TGG 0.289486 7_3:-81527281 Msa1129550:three_prime_UTR
TTAAATCAAGCAGACCAATT+TGG 0.289912 7_3:+81530870 None:intergenic
AACCACAAGGCTCATTTGTT+TGG 0.308683 7_3:-81529772 Msa1129550:CDS
ATTGAAATTGAAGAGAATTC+AGG 0.311218 7_3:-81527775 Msa1129550:CDS
GCCGGAGGACCAAATGAAAA+TGG 0.327784 7_3:-81527394 Msa1129550:CDS
GGATAAACAAGCTCCCCTTT+TGG 0.339653 7_3:+81529795 None:intergenic
CATATTCATATTTATGAGAA+TGG 0.341156 7_3:-81529915 Msa1129550:CDS
TCCAAGGACTTAGAAGAATA+TGG 0.358787 7_3:-81527733 Msa1129550:CDS
CAATGCATTTCAGTCCAAAT+TGG 0.362325 7_3:-81530884 Msa1129550:five_prime_UTR
GAAGAGATGGCAAAGATAAC+TGG 0.383719 7_3:-81530044 Msa1129550:CDS
AGTGAACAAGCACAGATATA+AGG 0.384763 7_3:+81529979 None:intergenic
GGATTGAAGCTTCACATTGA+TGG 0.392047 7_3:-81529165 Msa1129550:CDS
ATGTTGCAGCGTGCGGTTGC+CGG 0.393302 7_3:-81527412 Msa1129550:intron
GCCATATTCTTCTAAGTCCT+TGG 0.397824 7_3:+81527732 None:intergenic
AGAGGGAGTGAAGTAATTCT+TGG 0.400194 7_3:-81529948 Msa1129550:CDS
GTTTGCTTATCTAAAGGTAT+TGG 0.427009 7_3:-81528533 Msa1129550:CDS
AGGTTTAATTCATAATTTAT+CGG 0.430134 7_3:-81527246 Msa1129550:three_prime_UTR
TCCTTGGATAGCTTTGCTGC+TGG 0.432710 7_3:+81527748 None:intergenic
CTTTGTTTCTTTAGCAAAGT+GGG 0.433429 7_3:-81527161 Msa1129550:three_prime_UTR
CCAGTTGGATCTGTAATTGT+TGG 0.446162 7_3:-81528506 Msa1129550:CDS
TTTGTCCCATCAGGCACTAT+GGG 0.452519 7_3:-81530005 Msa1129550:CDS
GATTAGGTTTGCTTATCTAA+AGG 0.460763 7_3:-81528539 Msa1129550:intron
ATTTGTTTGGAAAATTCTCA+TGG 0.463399 7_3:-81529759 Msa1129550:CDS
TGTGTTACAAACAAAACAAA+AGG 0.466316 7_3:+81527293 None:intergenic
GAGGTCGATGATGATGTTCT+TGG 0.472967 7_3:-81530095 Msa1129550:CDS
GTTGAATATACAGAGAGAGT+TGG 0.482578 7_3:-81529207 Msa1129550:CDS
ACAGTTAGAAATAATGAAGA+TGG 0.487457 7_3:-81529858 Msa1129550:CDS
TAACTAGGACAGTGGATCTT+CGG 0.488854 7_3:-81530172 Msa1129550:CDS
TGAAACAATGCGAGTTGCTA+TGG 0.491610 7_3:-81530126 Msa1129550:CDS
TACCTTGGTTATAAAGCTGT+TGG 0.496036 7_3:+81528481 None:intergenic
TCTTCTAAGCGTAAACAAGA+AGG 0.503667 7_3:+81530065 None:intergenic
AATGGAGGCATTGCAACCCT+TGG 0.505718 7_3:-81529897 Msa1129550:CDS
CTTGTTCACTGCGACATAAG+AGG 0.507878 7_3:-81529966 Msa1129550:CDS
GGAGGCATTGCAACCCTTGG+AGG 0.509812 7_3:-81529894 Msa1129550:CDS
CTGTCTCATTCCACCACCTA+AGG 0.510563 7_3:+81528344 None:intergenic
GGCATCCTTCTCATGCCAAT+CGG 0.513035 7_3:-81527712 Msa1129550:CDS
CGCTATCTGATATTTGGTGG+TGG 0.515490 7_3:+81527546 None:intergenic
CATGGATATTGATTTGATTG+AGG 0.516490 7_3:-81529832 Msa1129550:CDS
GCAACTCGCATTGTTTCAGT+TGG 0.519214 7_3:+81530131 None:intergenic
TTCTTGGATGTACACCTCCA+AGG 0.519508 7_3:+81529880 None:intergenic
CCAACAATTACAGATCCAAC+TGG 0.520070 7_3:+81528506 None:intergenic
CAAAATGGTAACTAGGACAG+TGG 0.520303 7_3:-81530180 Msa1129550:exon
CTGCAATTAGAGATCCAAAA+GGG 0.526811 7_3:-81529809 Msa1129550:CDS
CACTTGGTGTTCCTGTGGAT+AGG 0.527788 7_3:-81529008 Msa1129550:CDS
AGAAGGCTCAGAAAGACCTT+AGG 0.529362 7_3:-81528360 Msa1129550:CDS
CATCGCTATCTGATATTTGG+TGG 0.529995 7_3:+81527543 None:intergenic
CTTAGGTGGTGGAATGAGAC+AGG 0.531990 7_3:-81528343 Msa1129550:CDS
TCAGGCACTTGGTGTTCCTG+TGG 0.542119 7_3:-81529013 Msa1129550:intron
TTGCAGACAAAATGGTAACT+AGG 0.544552 7_3:-81530187 Msa1129550:intron
TCTTGGATGTACACCTCCAA+GGG 0.546880 7_3:+81529881 None:intergenic
AAATATGGAGCATAGTAAGA+AGG 0.552340 7_3:-81527266 Msa1129550:three_prime_UTR
CTCAGAAAGACCTTAGGTGG+TGG 0.554851 7_3:-81528354 Msa1129550:CDS
CTCAATCAAATCAATATCCA+TGG 0.555497 7_3:+81529833 None:intergenic
TGAAATCAAAGGACTGAGAG+TGG 0.556209 7_3:-81527934 Msa1129550:CDS
TCTTTGTTTCTTTAGCAAAG+TGG 0.556806 7_3:-81527162 Msa1129550:three_prime_UTR
AAAGGTATTGGTGCTCCAGT+TGG 0.559792 7_3:-81528521 Msa1129550:CDS
AATATTGGTTTCCACAGAAG+AGG 0.561141 7_3:+81527908 None:intergenic
TTTACGCTTAGAAGAAGAGA+TGG 0.562019 7_3:-81530057 Msa1129550:CDS
GGTTCCCCATAGTGCCTGAT+GGG 0.562284 7_3:+81530000 None:intergenic
GATGGATTGAATGAAATCAA+AGG 0.567749 7_3:-81527945 Msa1129550:CDS
ATATACAGAGAGAGTTGGAG+AGG 0.569205 7_3:-81529202 Msa1129550:CDS
AACTGAAAGGCATCTACCAC+CGG 0.571112 7_3:+81529227 None:intergenic
TTGGACTGAAATGCATTGCA+TGG 0.573672 7_3:+81530889 None:intergenic
AGGTTCCCCATAGTGCCTGA+TGG 0.574535 7_3:+81529999 None:intergenic
TCATGCCAATCGGATCATCA+AGG 0.575646 7_3:-81527702 Msa1129550:intron
AAACAAATGAGCCTTGTGGT+TGG 0.579817 7_3:+81529774 None:intergenic
GGTGGTGGAATGAGACAGGT+TGG 0.583127 7_3:-81528339 Msa1129550:CDS
AGCGTAAACAAGAAGGGTCG+CGG 0.584966 7_3:+81530072 None:intergenic
TTCCAACAGCTTTATAACCA+AGG 0.590972 7_3:-81528483 Msa1129550:intron
GCTGCAATTAGAGATCCAAA+AGG 0.591600 7_3:-81529810 Msa1129550:CDS
CTTCTAAGCGTAAACAAGAA+GGG 0.596464 7_3:+81530066 None:intergenic
GGAGAGGTTGCTAAGAAGCA+CGG 0.596469 7_3:-81529186 Msa1129550:CDS
CAAGACCTTGATGATCCGAT+TGG 0.596889 7_3:+81527697 None:intergenic
ATTCATATTTATGAGAATGG+AGG 0.597452 7_3:-81529912 Msa1129550:CDS
TTCCAAACAAATGAGCCTTG+TGG 0.608620 7_3:+81529770 None:intergenic
TTGTTCACTGCGACATAAGA+GGG 0.608669 7_3:-81529965 Msa1129550:CDS
TGTGGATAGGCTTGTTCGAG+CGG 0.608773 7_3:-81528995 Msa1129550:CDS
TCCAGCAGCAAAGCTATCCA+AGG 0.609285 7_3:-81527749 Msa1129550:CDS
AGGCTCAGAAAGACCTTAGG+TGG 0.612425 7_3:-81528357 Msa1129550:CDS
TTTCCTGAATGCAGCACCGG+TGG 0.617194 7_3:-81529243 Msa1129550:intron
GAGAGTGGATACCTCTTCTG+TGG 0.618793 7_3:-81527919 Msa1129550:CDS
GCTCGAACAAGCCTATCCAC+AGG 0.622305 7_3:+81528997 None:intergenic
TGGACTGAAATGCATTGCAT+GGG 0.623621 7_3:+81530890 None:intergenic
TCTCTGTATATTCAACTGAA+AGG 0.625952 7_3:+81529214 None:intergenic
ATGATCCGATTGGCATGAGA+AGG 0.633762 7_3:+81527707 None:intergenic
AAATAATGAAGATGGAACCA+TGG 0.634516 7_3:-81529850 Msa1129550:CDS
CAACAAGTGCAGCTGCACAA+AGG 0.642170 7_3:+81528313 None:intergenic
TTGTCCCATCAGGCACTATG+GGG 0.644998 7_3:-81530004 Msa1129550:CDS
AGCTTGTTTATCCAACCACA+AGG 0.653076 7_3:-81529785 Msa1129550:CDS
AGTTGCTATGGCAAACGCTG+AGG 0.668418 7_3:-81530114 Msa1129550:CDS
TGCAATTAGAGATCCAAAAG+GGG 0.670578 7_3:-81529808 Msa1129550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACTAATAATAATAAGT+TGG - chr7_3:81527446-81527465 Msa1129550:intron 10.0%
!! TTAACTTTACATTATTAAAA+AGG + chr7_3:81528791-81528810 None:intergenic 10.0%
!!! ACTAATTCATTTTATAACTA+AGG - chr7_3:81528735-81528754 Msa1129550:intron 15.0%
!! CTTTGAATATATATATGATT+AGG - chr7_3:81529563-81529582 Msa1129550:intron 15.0%
!! GAGTAAATTACTTTAATAAA+AGG + chr7_3:81530489-81530508 None:intergenic 15.0%
!!! TATATTTCTTTTCTTTTTCT+TGG - chr7_3:81530653-81530672 Msa1129550:intron 15.0%
!! TTTGTAACACAAATAAAATA+TGG - chr7_3:81530837-81530856 Msa1129550:five_prime_UTR 15.0%
!! AGGTTTAATTCATAATTTAT+CGG - chr7_3:81530872-81530891 Msa1129550:five_prime_UTR 15.0%
!! AATTAGTTGGATATAGTTAA+AGG - chr7_3:81527407-81527426 Msa1129550:intron 20.0%
!!! TTTTGTTATAAGCTTTAAGT+TGG - chr7_3:81527629-81527648 Msa1129550:intron 20.0%
!! AAGACCTGAATATAATTTAA+AGG - chr7_3:81527798-81527817 Msa1129550:intron 20.0%
!! ACTACCTTTAAATTATATTC+AGG + chr7_3:81527805-81527824 None:intergenic 20.0%
!! TGAATATAATTTAAAGGTAG+TGG - chr7_3:81527804-81527823 Msa1129550:intron 20.0%
!! CATATTCATATTTATGAGAA+TGG - chr7_3:81528203-81528222 Msa1129550:intron 20.0%
!! TGTGTAGAAAATGTAAATAA+TGG + chr7_3:81528627-81528646 None:intergenic 20.0%
!! ATGTCAATACTTATTCTTAT+TGG - chr7_3:81529405-81529424 Msa1129550:intron 20.0%
!! ATTACCAAATTCAAATCAAA+AGG - chr7_3:81529511-81529530 Msa1129550:intron 20.0%
!!! ATAACCTTTTGATTTGAATT+TGG + chr7_3:81529518-81529537 None:intergenic 20.0%
!!! GTATGTATATATGCTATTTT+AGG - chr7_3:81529733-81529752 Msa1129550:intron 20.0%
!!! TTTTTGTGTCTTTATTTGAT+AGG + chr7_3:81529912-81529931 None:intergenic 20.0%
!!! ATTATTATCAGTTTTGTGTT+TGG + chr7_3:81529939-81529958 None:intergenic 20.0%
!! GTTAGAGGAAAAAATTTAAA+GGG + chr7_3:81530143-81530162 None:intergenic 20.0%
!! AGTTAGAGGAAAAAATTTAA+AGG + chr7_3:81530144-81530163 None:intergenic 20.0%
!! CTACAAAATACTTACAATAT+TGG + chr7_3:81530228-81530247 None:intergenic 20.0%
!! CTTCAATTTCAATATATATC+TGG + chr7_3:81530336-81530355 None:intergenic 20.0%
! GTTAAAGGTAGTTTACAAAT+TGG - chr7_3:81527422-81527441 Msa1129550:intron 25.0%
!!! TTTTTTTTTTAAACCGCACA+TGG + chr7_3:81527571-81527590 None:intergenic 25.0%
!! TTTTCATAAGCTAAGAACTA+TGG - chr7_3:81527689-81527708 Msa1129550:intron 25.0%
!! AATTGCTAACTTGATTTGAT+CGG - chr7_3:81527845-81527864 Msa1129550:intron 25.0%
! ATTCATATTTATGAGAATGG+AGG - chr7_3:81528206-81528225 Msa1129550:intron 25.0%
!!! TCATTATTTCTAACTGTTCT+TGG + chr7_3:81528257-81528276 None:intergenic 25.0%
! ACAGTTAGAAATAATGAAGA+TGG - chr7_3:81528260-81528279 Msa1129550:CDS 25.0%
! ATTTGTTTGGAAAATTCTCA+TGG - chr7_3:81528359-81528378 Msa1129550:CDS 25.0%
!!! TAGTAATGTTTTGTTGGATA+CGG - chr7_3:81528415-81528434 Msa1129550:intron 25.0%
! ATATCGCTGAAATAATAGAA+AGG - chr7_3:81528462-81528481 Msa1129550:intron 25.0%
! AAAGTTAAGAATTCCTTCAA+TGG - chr7_3:81528803-81528822 Msa1129550:intron 25.0%
! ATAATATAGACAACCATTGA+AGG + chr7_3:81528819-81528838 None:intergenic 25.0%
! GTTTATATATACATGATAGC+AGG + chr7_3:81529059-81529078 None:intergenic 25.0%
!!! ACAGAAAATTTTGGTTTTTC+AGG - chr7_3:81529087-81529106 Msa1129550:intron 25.0%
!! TCTTTTACCTTCTCTTTTAT+TGG - chr7_3:81529170-81529189 Msa1129550:CDS 25.0%
! ATGTTCCATAGTTAGAAAAA+AGG - chr7_3:81529227-81529246 Msa1129550:CDS 25.0%
!!! AACATCCTTTTTTCTAACTA+TGG + chr7_3:81529235-81529254 None:intergenic 25.0%
! TATTCAAAGTAATCACAAGT+TGG + chr7_3:81529552-81529571 None:intergenic 25.0%
!!! ATAACGATTTTGAAATACCT+TGG + chr7_3:81529655-81529674 None:intergenic 25.0%
! TCATTTATAACCACATTTGT+TGG - chr7_3:81529979-81529998 Msa1129550:CDS 25.0%
! ATTTCATTCAATCCATCTAA+AGG + chr7_3:81530170-81530189 None:intergenic 25.0%
! ACTAGTATGAATGAAATGAA+TGG + chr7_3:81530254-81530273 None:intergenic 25.0%
! ATTGAAATTGAAGAGAATTC+AGG - chr7_3:81530343-81530362 Msa1129550:intron 25.0%
! GAAATATATACAGCAAAACA+AGG + chr7_3:81530641-81530660 None:intergenic 25.0%
! TGTGTTACAAACAAAACAAA+AGG + chr7_3:81530828-81530847 None:intergenic 25.0%
TTAAATCAAGCAGACCAATT+TGG + chr7_3:81527251-81527270 None:intergenic 30.0%
!!! TGTGTTACTTGCAATTTTGT+TGG - chr7_3:81527312-81527331 Msa1129550:three_prime_UTR 30.0%
! TGCAATTTTGTTGGAATACA+AGG - chr7_3:81527321-81527340 Msa1129550:three_prime_UTR 30.0%
AACGAACTAAGAAGTTTAAG+AGG + chr7_3:81527356-81527375 None:intergenic 30.0%
TGATAGACTATGATACATCA+TGG + chr7_3:81527735-81527754 None:intergenic 30.0%
! TGATCGGTTCTAGTTAAATT+TGG - chr7_3:81527861-81527880 Msa1129550:intron 30.0%
! GATCGGTTCTAGTTAAATTT+GGG - chr7_3:81527862-81527881 Msa1129550:intron 30.0%
CTAGTTAAATTTGGGAGAAT+TGG - chr7_3:81527870-81527889 Msa1129550:intron 30.0%
!!! TGTTTTAGTTGCAGACAAAA+TGG - chr7_3:81527923-81527942 Msa1129550:CDS 30.0%
AAATAATGAAGATGGAACCA+TGG - chr7_3:81528268-81528287 Msa1129550:CDS 30.0%
CTCAATCAAATCAATATCCA+TGG + chr7_3:81528288-81528307 None:intergenic 30.0%
!! CATGGATATTGATTTGATTG+AGG - chr7_3:81528286-81528305 Msa1129550:CDS 30.0%
! TCACTCTAGTAATGTTTTGT+TGG - chr7_3:81528409-81528428 Msa1129550:intron 30.0%
GCTCATAGTTTACTGATAAA+TGG - chr7_3:81528437-81528456 Msa1129550:intron 30.0%
AAGTACAGTAAAAACATGCT+AGG + chr7_3:81528604-81528623 None:intergenic 30.0%
! TTTTATAGCCCTTCATTCAA+AGG + chr7_3:81528677-81528696 None:intergenic 30.0%
TCTCTGTATATTCAACTGAA+AGG + chr7_3:81528907-81528926 None:intergenic 30.0%
! CAACTCATGACAGAAAATTT+TGG - chr7_3:81529078-81529097 Msa1129550:intron 30.0%
ATCATGTCCAATAAAAGAGA+AGG + chr7_3:81529180-81529199 None:intergenic 30.0%
! CTTTTATTGGACATGATTCT+TGG - chr7_3:81529183-81529202 Msa1129550:CDS 30.0%
TGAAATTGTGATATACTTGC+TGG - chr7_3:81529280-81529299 Msa1129550:intron 30.0%
CATGACACTATACTAAATGT+TGG + chr7_3:81529462-81529481 None:intergenic 30.0%
CAACATTTAGTATAGTGTCA+TGG - chr7_3:81529460-81529479 Msa1129550:intron 30.0%
! GATTAGGTTTGCTTATCTAA+AGG - chr7_3:81529579-81529598 Msa1129550:intron 30.0%
! GTTTGCTTATCTAAAGGTAT+TGG - chr7_3:81529585-81529604 Msa1129550:intron 30.0%
!!! ATATGCTATTTTAGGCTAGA+AGG - chr7_3:81529741-81529760 Msa1129550:intron 30.0%
! TCACAAGAATGCTAGATTTT+TGG - chr7_3:81529862-81529881 Msa1129550:CDS 30.0%
CAACATTGTAAAGAACATAC+CGG + chr7_3:81529888-81529907 None:intergenic 30.0%
GGTGTTAAGTAGATGTTAAT+TGG - chr7_3:81530064-81530083 Msa1129550:CDS 30.0%
!! GATGGATTGAATGAAATCAA+AGG - chr7_3:81530173-81530192 Msa1129550:CDS 30.0%
TCTTATCGTATCAGTTTCAT+TGG - chr7_3:81530516-81530535 Msa1129550:intron 30.0%
!! AGCTAGTTTCCATTTTCATT+TGG + chr7_3:81530736-81530755 None:intergenic 30.0%
TTCAGTTGTGTGAATAAGTA+TGG - chr7_3:81530801-81530820 Msa1129550:five_prime_UTR 30.0%
AAATATGGAGCATAGTAAGA+AGG - chr7_3:81530852-81530871 Msa1129550:five_prime_UTR 30.0%
! TCTTTGTTTCTTTAGCAAAG+TGG - chr7_3:81530956-81530975 Msa1129550:five_prime_UTR 30.0%
CAATGCATTTCAGTCCAAAT+TGG - chr7_3:81527234-81527253 Msa1129550:three_prime_UTR 35.0%
ACTAATTCTAGCAGAATCAG+TGG + chr7_3:81527394-81527413 None:intergenic 35.0%
CTGATTCTGCTAGAATTAGT+TGG - chr7_3:81527394-81527413 Msa1129550:CDS 35.0%
TTGCAGACAAAATGGTAACT+AGG - chr7_3:81527931-81527950 Msa1129550:CDS 35.0%
CTTCTAAGCGTAAACAAGAA+GGG + chr7_3:81528055-81528074 None:intergenic 35.0%
TCTTCTAAGCGTAAACAAGA+AGG + chr7_3:81528056-81528075 None:intergenic 35.0%
TTTACGCTTAGAAGAAGAGA+TGG - chr7_3:81528061-81528080 Msa1129550:intron 35.0%
AGTGAACAAGCACAGATATA+AGG + chr7_3:81528142-81528161 None:intergenic 35.0%
CTGCAATTAGAGATCCAAAA+GGG - chr7_3:81528309-81528328 Msa1129550:CDS 35.0%
TGCAATTAGAGATCCAAAAG+GGG - chr7_3:81528310-81528329 Msa1129550:CDS 35.0%
GTTGAATATACAGAGAGAGT+TGG - chr7_3:81528911-81528930 Msa1129550:intron 35.0%
!! CAGCTTTGAGTTCTTTAATC+TGG - chr7_3:81529031-81529050 Msa1129550:intron 35.0%
!!! ATTTTGGTTTTTCAGGCACT+TGG - chr7_3:81529094-81529113 Msa1129550:intron 35.0%
TTCTAACCAAGAAACATCTC+AGG + chr7_3:81529309-81529328 None:intergenic 35.0%
! TTCTTCAACCTTGAAGTACT+CGG - chr7_3:81529334-81529353 Msa1129550:intron 35.0%
! GTCATGGCAATGACAATTTT+AGG - chr7_3:81529476-81529495 Msa1129550:intron 35.0%
! TTCCAACAGCTTTATAACCA+AGG - chr7_3:81529635-81529654 Msa1129550:intron 35.0%
TACCTTGGTTATAAAGCTGT+TGG + chr7_3:81529640-81529659 None:intergenic 35.0%
!!! AAGAATGCTAGATTTTTGGC+CGG - chr7_3:81529866-81529885 Msa1129550:CDS 35.0%
ACAACAAACACCAACAAATG+TGG + chr7_3:81529992-81530011 None:intergenic 35.0%
!! TTGTTGGTGTTTGTTGTTCT+CGG - chr7_3:81529995-81530014 Msa1129550:CDS 35.0%
!! AATATTGGTTTCCACAGAAG+AGG + chr7_3:81530213-81530232 None:intergenic 35.0%
TCCAAGGACTTAGAAGAATA+TGG - chr7_3:81530385-81530404 Msa1129550:intron 35.0%
! GTGAACAATGAAGTGCTTTA+TGG - chr7_3:81530911-81530930 Msa1129550:five_prime_UTR 35.0%
TGGACTGAAATGCATTGCAT+GGG + chr7_3:81527231-81527250 None:intergenic 40.0%
TTGGACTGAAATGCATTGCA+TGG + chr7_3:81527232-81527251 None:intergenic 40.0%
CAAAATGGTAACTAGGACAG+TGG - chr7_3:81527938-81527957 Msa1129550:CDS 40.0%
TAACTAGGACAGTGGATCTT+CGG - chr7_3:81527946-81527965 Msa1129550:CDS 40.0%
TGAAACAATGCGAGTTGCTA+TGG - chr7_3:81527992-81528011 Msa1129550:intron 40.0%
GAAGAGATGGCAAAGATAAC+TGG - chr7_3:81528074-81528093 Msa1129550:intron 40.0%
TTGTTCACTGCGACATAAGA+GGG - chr7_3:81528153-81528172 Msa1129550:intron 40.0%
AGAGGGAGTGAAGTAATTCT+TGG - chr7_3:81528170-81528189 Msa1129550:intron 40.0%
GCTGCAATTAGAGATCCAAA+AGG - chr7_3:81528308-81528327 Msa1129550:CDS 40.0%
! AGCTTGTTTATCCAACCACA+AGG - chr7_3:81528333-81528352 Msa1129550:CDS 40.0%
! AAACAAATGAGCCTTGTGGT+TGG + chr7_3:81528347-81528366 None:intergenic 40.0%
AACCACAAGGCTCATTTGTT+TGG - chr7_3:81528346-81528365 Msa1129550:CDS 40.0%
TTCCAAACAAATGAGCCTTG+TGG + chr7_3:81528351-81528370 None:intergenic 40.0%
CGATATTTGTTCACGGAGTT+CGG + chr7_3:81528529-81528548 None:intergenic 40.0%
GAGCACACGATATTTGTTCA+CGG + chr7_3:81528536-81528555 None:intergenic 40.0%
ATATACAGAGAGAGTTGGAG+AGG - chr7_3:81528916-81528935 Msa1129550:intron 40.0%
GGATTGAAGCTTCACATTGA+TGG - chr7_3:81528953-81528972 Msa1129550:intron 40.0%
TGGTTTCCTGAGATGTTTCT+TGG - chr7_3:81529300-81529319 Msa1129550:intron 40.0%
CCAACAATTACAGATCCAAC+TGG + chr7_3:81529615-81529634 None:intergenic 40.0%
CCAGTTGGATCTGTAATTGT+TGG - chr7_3:81529612-81529631 Msa1129550:intron 40.0%
! CTTCAAACAGACTAGCTAGT+AGG + chr7_3:81530102-81530121 None:intergenic 40.0%
CCATCTAAAGGACAAGTTAG+AGG + chr7_3:81530158-81530177 None:intergenic 40.0%
! CCTCTAACTTGTCCTTTAGA+TGG - chr7_3:81530155-81530174 Msa1129550:CDS 40.0%
TGAAATCAAAGGACTGAGAG+TGG - chr7_3:81530184-81530203 Msa1129550:exon 40.0%
GCCATATTCTTCTAAGTCCT+TGG + chr7_3:81530389-81530408 None:intergenic 40.0%
CATCGCTATCTGATATTTGG+TGG + chr7_3:81530578-81530597 None:intergenic 40.0%
GCACATCGCTATCTGATATT+TGG + chr7_3:81530581-81530600 None:intergenic 40.0%
ATACACTTTGTCGTGCTTTC+AGG - chr7_3:81530602-81530621 Msa1129550:intron 40.0%
TTATTGAATGTTGCAGCGTG+CGG - chr7_3:81530699-81530718 Msa1129550:intron 40.0%
! TCCATTTTCATTTGGTCCTC+CGG + chr7_3:81530728-81530747 None:intergenic 40.0%
AACAGATTCTGTGCCATGTG+CGG - chr7_3:81527555-81527574 Msa1129550:CDS 45.0%
GCAACTCGCATTGTTTCAGT+TGG + chr7_3:81527990-81528009 None:intergenic 45.0%
! GAGGTCGATGATGATGTTCT+TGG - chr7_3:81528023-81528042 Msa1129550:intron 45.0%
! TTTTGTCCCATCAGGCACTA+TGG - chr7_3:81528112-81528131 Msa1129550:intron 45.0%
TTTGTCCCATCAGGCACTAT+GGG - chr7_3:81528113-81528132 Msa1129550:intron 45.0%
CTTGTTCACTGCGACATAAG+AGG - chr7_3:81528152-81528171 Msa1129550:intron 45.0%
TCTTGGATGTACACCTCCAA+GGG + chr7_3:81528240-81528259 None:intergenic 45.0%
TTCTTGGATGTACACCTCCA+AGG + chr7_3:81528241-81528260 None:intergenic 45.0%
! GGATAAACAAGCTCCCCTTT+TGG + chr7_3:81528326-81528345 None:intergenic 45.0%
TACTGCAACTACTCTGCAGT+CGG - chr7_3:81528485-81528504 Msa1129550:CDS 45.0%
ACTCTGCTGCCTTTGAATGA+AGG - chr7_3:81528665-81528684 Msa1129550:intron 45.0%
CTCTGCTGCCTTTGAATGAA+GGG - chr7_3:81528666-81528685 Msa1129550:intron 45.0%
TTGTTTCCTGAATGCAGCAC+CGG - chr7_3:81528872-81528891 Msa1129550:intron 45.0%
!! AACTGAAAGGCATCTACCAC+CGG + chr7_3:81528894-81528913 None:intergenic 45.0%
!! AAAGGTATTGGTGCTCCAGT+TGG - chr7_3:81529597-81529616 Msa1129550:intron 45.0%
AGAAGGCTCAGAAAGACCTT+AGG - chr7_3:81529758-81529777 Msa1129550:CDS 45.0%
CACTGACACATGTTGGACAA+CGG - chr7_3:81530019-81530038 Msa1129550:CDS 45.0%
AACGGACACCCTTCAATATC+AGG - chr7_3:81530037-81530056 Msa1129550:CDS 45.0%
ACGGACACCCTTCAATATCA+GGG - chr7_3:81530038-81530057 Msa1129550:CDS 45.0%
ATGATCCGATTGGCATGAGA+AGG + chr7_3:81530414-81530433 None:intergenic 45.0%
TCATGCCAATCGGATCATCA+AGG - chr7_3:81530416-81530435 Msa1129550:intron 45.0%
! CAAGACCTTGATGATCCGAT+TGG + chr7_3:81530424-81530443 None:intergenic 45.0%
! CGCTATCTGATATTTGGTGG+TGG + chr7_3:81530575-81530594 None:intergenic 45.0%
! TCGTGCTTTCAGGTGATGAT+CGG - chr7_3:81530612-81530631 Msa1129550:intron 45.0%
AGTTGCTATGGCAAACGCTG+AGG - chr7_3:81528004-81528023 Msa1129550:intron 50.0%
AGCGTAAACAAGAAGGGTCG+CGG + chr7_3:81528049-81528068 None:intergenic 50.0%
! GCTGCTCTTTTTGTCCCATC+AGG - chr7_3:81528104-81528123 Msa1129550:intron 50.0%
TTGTCCCATCAGGCACTATG+GGG - chr7_3:81528114-81528133 Msa1129550:intron 50.0%
!! AATGGAGGCATTGCAACCCT+TGG - chr7_3:81528221-81528240 Msa1129550:intron 50.0%
TACTCTGCAGTCGGAGATGT+AGG - chr7_3:81528494-81528513 Msa1129550:CDS 50.0%
GTCGGAGATGTAGGCAGAAT+TGG - chr7_3:81528503-81528522 Msa1129550:CDS 50.0%
GGAGAGGTTGCTAAGAAGCA+CGG - chr7_3:81528932-81528951 Msa1129550:intron 50.0%
!! CACTTGGTGTTCCTGTGGAT+AGG - chr7_3:81529110-81529129 Msa1129550:intron 50.0%
! TGTGGATAGGCTTGTTCGAG+CGG - chr7_3:81529123-81529142 Msa1129550:intron 50.0%
GCTTCGAACCGAGTACTTCA+AGG + chr7_3:81529345-81529364 None:intergenic 50.0%
AGGCTCAGAAAGACCTTAGG+TGG - chr7_3:81529761-81529780 Msa1129550:CDS 50.0%
CTCAGAAAGACCTTAGGTGG+TGG - chr7_3:81529764-81529783 Msa1129550:CDS 50.0%
CTGTCTCATTCCACCACCTA+AGG + chr7_3:81529777-81529796 None:intergenic 50.0%
!! CTTAGGTGGTGGAATGAGAC+AGG - chr7_3:81529775-81529794 Msa1129550:CDS 50.0%
CAACAAGTGCAGCTGCACAA+AGG + chr7_3:81529808-81529827 None:intergenic 50.0%
TCTCGGACACTGACACATGT+TGG - chr7_3:81530012-81530031 Msa1129550:CDS 50.0%
CGGACACCCTTCAATATCAG+GGG - chr7_3:81530039-81530058 Msa1129550:CDS 50.0%
CACCCTTCAATATCAGGGGT+CGG - chr7_3:81530043-81530062 Msa1129550:CDS 50.0%
CACCGACCCCTGATATTGAA+GGG + chr7_3:81530048-81530067 None:intergenic 50.0%
ACACCGACCCCTGATATTGA+AGG + chr7_3:81530049-81530068 None:intergenic 50.0%
GAGAGTGGATACCTCTTCTG+TGG - chr7_3:81530199-81530218 Msa1129550:intron 50.0%
TCCAGCAGCAAAGCTATCCA+AGG - chr7_3:81530369-81530388 Msa1129550:intron 50.0%
! TCCTTGGATAGCTTTGCTGC+TGG + chr7_3:81530373-81530392 None:intergenic 50.0%
GGCATCCTTCTCATGCCAAT+CGG - chr7_3:81530406-81530425 Msa1129550:intron 50.0%
GCCGGAGGACCAAATGAAAA+TGG - chr7_3:81530724-81530743 Msa1129550:intron 50.0%
CATTATCCACGCTCGAAGCG+TGG - chr7_3:81527771-81527790 Msa1129550:CDS 55.0%
TTATGTCCACGCTTCGAGCG+TGG + chr7_3:81527780-81527799 None:intergenic 55.0%
GGTTCCCCATAGTGCCTGAT+GGG + chr7_3:81528121-81528140 None:intergenic 55.0%
AGGTTCCCCATAGTGCCTGA+TGG + chr7_3:81528122-81528141 None:intergenic 55.0%
! TTTCCTGAATGCAGCACCGG+TGG - chr7_3:81528875-81528894 Msa1129550:intron 55.0%
!! TCAGGCACTTGGTGTTCCTG+TGG - chr7_3:81529105-81529124 Msa1129550:intron 55.0%
GCTCGAACAAGCCTATCCAC+AGG + chr7_3:81529124-81529143 None:intergenic 55.0%
!! GGTGGTGGAATGAGACAGGT+TGG - chr7_3:81529779-81529798 Msa1129550:CDS 55.0%
!! GGAGGCATTGCAACCCTTGG+AGG - chr7_3:81528224-81528243 Msa1129550:intron 60.0%
!! CTACCACCGGTGCTGCATTC+AGG + chr7_3:81528881-81528900 None:intergenic 60.0%
ATGTTGCAGCGTGCGGTTGC+CGG - chr7_3:81530706-81530725 Msa1129550:intron 60.0%
TTGCAGCGTGCGGTTGCCGG+AGG - chr7_3:81530709-81530728 Msa1129550:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81527161 81530979 81527161 ID=Msa1129550;Name=Msa1129550
chr7_3 mRNA 81527161 81530979 81527161 ID=Msa1129550-mRNA-1;Parent=Msa1129550;Name=Msa1129550-mRNA-1;_AED=0.12;_eAED=0.12;_QI=187|1|1|1|0.88|0.8|10|226|358
chr7_3 exon 81527161 81527425 81527161 ID=Msa1129550-mRNA-1:exon:23789;Parent=Msa1129550-mRNA-1
chr7_3 exon 81527517 81527583 81527517 ID=Msa1129550-mRNA-1:exon:23788;Parent=Msa1129550-mRNA-1
chr7_3 exon 81527703 81527803 81527703 ID=Msa1129550-mRNA-1:exon:23787;Parent=Msa1129550-mRNA-1
chr7_3 exon 81527908 81527966 81527908 ID=Msa1129550-mRNA-1:exon:23786;Parent=Msa1129550-mRNA-1
chr7_3 exon 81528253 81528385 81528253 ID=Msa1129550-mRNA-1:exon:23785;Parent=Msa1129550-mRNA-1
chr7_3 exon 81528484 81528555 81528484 ID=Msa1129550-mRNA-1:exon:23784;Parent=Msa1129550-mRNA-1
chr7_3 exon 81528981 81529031 81528981 ID=Msa1129550-mRNA-1:exon:23783;Parent=Msa1129550-mRNA-1
chr7_3 exon 81529140 81529251 81529140 ID=Msa1129550-mRNA-1:exon:23782;Parent=Msa1129550-mRNA-1
chr7_3 exon 81529756 81530203 81529756 ID=Msa1129550-mRNA-1:exon:23781;Parent=Msa1129550-mRNA-1
chr7_3 exon 81530798 81530979 81530798 ID=Msa1129550-mRNA-1:exon:23780;Parent=Msa1129550-mRNA-1
chr7_3 five_prime_UTR 81530798 81530979 81530798 ID=Msa1129550-mRNA-1:five_prime_utr;Parent=Msa1129550-mRNA-1
chr7_3 five_prime_UTR 81530199 81530203 81530199 ID=Msa1129550-mRNA-1:five_prime_utr;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81529756 81530198 81529756 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81529140 81529251 81529140 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81528981 81529031 81528981 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81528484 81528555 81528484 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81528253 81528385 81528253 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81527908 81527966 81527908 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81527703 81527803 81527703 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81527517 81527583 81527517 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 CDS 81527387 81527425 81527387 ID=Msa1129550-mRNA-1:cds;Parent=Msa1129550-mRNA-1
chr7_3 three_prime_UTR 81527161 81527386 81527161 ID=Msa1129550-mRNA-1:three_prime_utr;Parent=Msa1129550-mRNA-1
Gene Sequence

>Msa1129550

ATGGTAACTAGGACAGTGGATCTTCGGTCAGATACAGTCACAAAACCAACTGAAACAATGCGAGTTGCTATGGCAAACGCTGAGGTCGATGATGATGTTCTTGGCCGCGACCCTTCTTGTTTACGCTTAGAAGAAGAGATGGCAAAGATAACTGGCAAAGAAGCTGCTCTTTTTGTCCCATCAGGCACTATGGGGAACCTTATATCTGTGCTTGTTCACTGCGACATAAGAGGGAGTGAAGTAATTCTTGGAGACAATTCACATATTCATATTTATGAGAATGGAGGCATTGCAACCCTTGGAGGTGTACATCCAAGAACAGTTAGAAATAATGAAGATGGAACCATGGATATTGATTTGATTGAGGCTGCAATTAGAGATCCAAAAGGGGAGCTTGTTTATCCAACCACAAGGCTCATTTGTTTGGAAAATTCTCATGGAAACACCGGTGGTAGATGCCTTTCAGTTGAATATACAGAGAGAGTTGGAGAGGTTGCTAAGAAGCACGGATTGAAGCTTCACATTGATGGAGCTCGTATATTTAATGCATCAGTTGCACTTGGTGTTCCTGTGGATAGGCTTGTTCGAGCGGCTGATTCAGTGTCAGTTTGCTTATCTAAAGGTATTGGTGCTCCAGTTGGATCTGTAATTGTTGGTTCCAACAGCTTTATAACCAAGGCTAGAAGGCTCAGAAAGACCTTAGGTGGTGGAATGAGACAGGTTGGCATCCTTTGTGCAGCTGCACTTGTTGCATTACATGAAAATGTTGAAAAGCTAGAAAGTGATCACAAGAATGCTAGATTTTTGGCCGATGGATTGAATGAAATCAAAGGACTGAGAGTGGATACCTCTTCTGTGGAAACCAATATTATATATATTGAAATTGAAGAGAATTCAGGAACTCCAGCAGCAAAGCTATCCAAGGACTTAGAAGAATATGGCATCCTTCTCATGCCAATCGGATCATCAAGATTGAGAGTTGTATTCCACCACCAAATATCAGATAGCGATGTGCGATACACTTTGTCGTGCTTTCAGCGTGCGGTTGCCGGAGGACCAAATGAAAATGGAAACTAG

Protein sequence

>Msa1129550

MVTRTVDLRSDTVTKPTETMRVAMANAEVDDDVLGRDPSCLRLEEEMAKITGKEAALFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPRTVRNNEDGTMDIDLIEAAIRDPKGELVYPTTRLICLENSHGNTGGRCLSVEYTERVGEVAKKHGLKLHIDGARIFNASVALGVPVDRLVRAADSVSVCLSKGIGAPVGSVIVGSNSFITKARRLRKTLGGGMRQVGILCAAALVALHENVEKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENSGTPAAKLSKDLEEYGILLMPIGSSRLRVVFHHQISDSDVRYTLSCFQRAVAGGPNENGN*