Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170620 | sp|Q9FHM4|MA653_ARATH | 61.538 | 741 | 229 | 11 | 1 | 726 | 1 | 700 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170620 | A0A072VLD1 | 96.164 | 730 | 25 | 2 | 1 | 728 | 1 | 729 | 0.0 | 1451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020540 | Msa0170620 | 0.811383 | 7.197622e-51 | -8.615850e-47 |
| Msa0032980 | Msa0170620 | 0.809717 | 1.648420e-50 | -8.615850e-47 |
| Msa0074360 | Msa0170620 | 0.807476 | 4.961154e-50 | -8.615850e-47 |
| Msa0077560 | Msa0170620 | 0.812259 | 4.638667e-51 | -8.615850e-47 |
| Msa0078130 | Msa0170620 | 0.829212 | 5.841015e-55 | -8.615850e-47 |
| Msa0091350 | Msa0170620 | 0.800402 | 1.465870e-48 | -8.615850e-47 |
| Msa0122330 | Msa0170620 | 0.834578 | 2.764698e-56 | -8.615850e-47 |
| Msa0140380 | Msa0170620 | 0.812608 | 3.891875e-51 | -8.615850e-47 |
| Msa0159620 | Msa0170620 | 0.809794 | 1.586815e-50 | -8.615850e-47 |
| Msa0165830 | Msa0170620 | 0.801618 | 8.268999e-49 | -8.615850e-47 |
| Msa0170620 | Msa0269210 | 0.803405 | 3.541101e-49 | -8.615850e-47 |
| Msa0170620 | Msa0368860 | 0.804905 | 1.725987e-49 | -8.615850e-47 |
| Msa0170620 | Msa0383000 | 0.816243 | 6.114916e-52 | -8.615850e-47 |
| Msa0170620 | Msa0433150 | 0.800953 | 1.131690e-48 | -8.615850e-47 |
| Msa0170620 | Msa0462780 | 0.812966 | 3.249659e-51 | -8.615850e-47 |
| Msa0170620 | Msa0481890 | 0.815181 | 1.054296e-51 | -8.615850e-47 |
| Msa0170620 | Msa0521680 | 0.806131 | 9.546539e-50 | -8.615850e-47 |
| Msa0170620 | Msa0580810 | 0.806567 | 7.725692e-50 | -8.615850e-47 |
| Msa0170620 | Msa0581840 | 0.803845 | 2.869361e-49 | -8.615850e-47 |
| Msa0170620 | Msa0607800 | 0.815173 | 1.058938e-51 | -8.615850e-47 |
| Msa0170620 | Msa0621710 | 0.813412 | 2.593471e-51 | -8.615850e-47 |
| Msa0170620 | Msa0648040 | 0.808380 | 3.186570e-50 | -8.615850e-47 |
| Msa0170620 | Msa0690740 | 0.805856 | 1.090474e-49 | -8.615850e-47 |
| Msa0170620 | Msa0709440 | 0.813752 | 2.182782e-51 | -8.615850e-47 |
| Msa0170620 | Msa0714520 | 0.815104 | 1.096711e-51 | -8.615850e-47 |
| Msa0170620 | Msa0745720 | 0.837049 | 6.536314e-57 | -8.615850e-47 |
| Msa0170620 | Msa0754430 | 0.802010 | 6.869898e-49 | -8.615850e-47 |
| Msa0170620 | Msa0863620 | 0.812478 | 4.156081e-51 | -8.615850e-47 |
| Msa0170620 | Msa0867110 | 0.836500 | 9.026267e-57 | -8.615850e-47 |
| Msa0170620 | Msa0879920 | 0.841967 | 3.445019e-58 | -8.615850e-47 |
| Msa0170620 | Msa0924430 | 0.811838 | 5.729714e-51 | -8.615850e-47 |
| Msa0170620 | Msa0931590 | 0.815143 | 1.075029e-51 | -8.615850e-47 |
| Msa0170620 | Msa1084530 | 0.812689 | 3.736261e-51 | -8.615850e-47 |
| Msa0170620 | Msa1125820 | 0.816958 | 4.227496e-52 | -8.615850e-47 |
| Msa0170620 | Msa1125990 | 0.811471 | 6.884674e-51 | -8.615850e-47 |
| Msa0170620 | Msa1127470 | 0.832087 | 1.154618e-55 | -8.615850e-47 |
| Msa0170620 | Msa1171290 | 0.814102 | 1.827473e-51 | -8.615850e-47 |
| Msa0170620 | Msa1201540 | 0.807954 | 3.927426e-50 | -8.615850e-47 |
| Msa0170620 | Msa1218820 | 0.824609 | 7.355715e-54 | -8.615850e-47 |
| Msa0170620 | Msa1263740 | 0.807487 | 4.934135e-50 | -8.615850e-47 |
| Msa0170620 | Msa1332950 | 0.815273 | 1.006148e-51 | -8.615850e-47 |
| Msa0170620 | Msa1362130 | 0.833695 | 4.600874e-56 | -8.615850e-47 |
| Msa0170620 | Msa1365500 | 0.841151 | 5.654193e-58 | -8.615850e-47 |
| Msa0170620 | Msa1366150 | 0.806240 | 9.054815e-50 | -8.615850e-47 |
| Msa0170620 | Msa1387440 | 0.807640 | 4.579315e-50 | -8.615850e-47 |
| Msa0170620 | Msa1450190 | 0.807715 | 4.414312e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170620 | MtrunA17_Chr1g0188201 | 96.164 | 730 | 25 | 2 | 1 | 728 | 1 | 729 | 0.0 | 1451 |
| Msa0170620 | MtrunA17_Chr6g0476051 | 67.028 | 737 | 204 | 12 | 1 | 726 | 1 | 709 | 0.0 | 946 |
| Msa0170620 | MtrunA17_Chr7g0245851 | 48.356 | 730 | 317 | 14 | 1 | 724 | 354 | 1029 | 0.0 | 589 |
| Msa0170620 | MtrunA17_Chr5g0444881 | 51.803 | 527 | 242 | 6 | 12 | 528 | 12 | 536 | 8.99e-173 | 508 |
| Msa0170620 | MtrunA17_Chr1g0164981 | 46.382 | 539 | 272 | 4 | 14 | 538 | 15 | 550 | 3.83e-156 | 466 |
| Msa0170620 | MtrunA17_Chr8g0354131 | 42.705 | 562 | 312 | 4 | 9 | 564 | 8 | 565 | 7.87e-145 | 435 |
| Msa0170620 | MtrunA17_Chr3g0122591 | 40.000 | 585 | 317 | 9 | 13 | 568 | 17 | 596 | 1.85e-132 | 404 |
| Msa0170620 | MtrunA17_Chr8g0345241 | 36.965 | 514 | 282 | 10 | 9 | 505 | 8 | 496 | 1.06e-93 | 300 |
| Msa0170620 | MtrunA17_Chr4g0039561 | 77.778 | 54 | 12 | 0 | 24 | 77 | 144 | 197 | 5.88e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170620 | AT5G51600.1 | 61.538 | 741 | 229 | 11 | 1 | 726 | 1 | 700 | 0.0 | 857 |
| Msa0170620 | AT3G60840.1 | 46.238 | 731 | 331 | 14 | 1 | 724 | 1 | 676 | 0.0 | 590 |
| Msa0170620 | AT5G62250.2 | 57.222 | 540 | 208 | 8 | 10 | 538 | 4 | 531 | 0.0 | 530 |
| Msa0170620 | AT5G62250.1 | 57.222 | 540 | 208 | 8 | 10 | 538 | 4 | 531 | 0.0 | 530 |
| Msa0170620 | AT5G55230.3 | 50.286 | 525 | 252 | 4 | 12 | 528 | 12 | 535 | 5.07e-173 | 509 |
| Msa0170620 | AT5G55230.1 | 50.286 | 525 | 252 | 4 | 12 | 528 | 12 | 535 | 5.07e-173 | 509 |
| Msa0170620 | AT4G26760.1 | 49.143 | 525 | 258 | 4 | 12 | 528 | 12 | 535 | 8.68e-172 | 505 |
| Msa0170620 | AT5G55230.2 | 47.834 | 554 | 251 | 5 | 12 | 528 | 12 | 564 | 2.28e-167 | 495 |
| Msa0170620 | AT1G14690.1 | 43.299 | 582 | 305 | 9 | 11 | 569 | 13 | 592 | 4.91e-158 | 471 |
| Msa0170620 | AT1G14690.2 | 43.299 | 582 | 305 | 9 | 11 | 569 | 13 | 592 | 4.91e-158 | 471 |
| Msa0170620 | AT2G01910.1 | 43.403 | 576 | 293 | 10 | 6 | 553 | 8 | 578 | 1.28e-153 | 459 |
| Msa0170620 | AT2G01910.2 | 42.989 | 542 | 276 | 10 | 40 | 553 | 1 | 537 | 8.68e-141 | 425 |
| Msa0170620 | AT2G38720.1 | 42.939 | 524 | 280 | 6 | 19 | 528 | 12 | 530 | 2.84e-132 | 402 |
| Msa0170620 | AT1G27920.1 | 39.962 | 528 | 298 | 9 | 13 | 527 | 17 | 538 | 1.58e-121 | 375 |
| Msa0170620 | AT1G27920.2 | 40.100 | 399 | 227 | 6 | 10 | 400 | 14 | 408 | 2.14e-88 | 284 |
Find 191 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTTATTTAGATAATA+TGG | 0.144949 | 1_4:+54880109 | Msa0170620:intron |
| TTAATTCTTCATCATTAATA+TGG | 0.189196 | 1_4:-54884696 | None:intergenic |
| TCGACTGCACCATCTATTTC+TGG | 0.205819 | 1_4:-54881951 | None:intergenic |
| AGGTCCCTTCTTTACACTTT+GGG | 0.215099 | 1_4:-54883223 | None:intergenic |
| AATCATAAGTCAATTGTAAT+TGG | 0.224252 | 1_4:+54884524 | Msa0170620:three_prime_UTR |
| CGAAGTGTACTGACCTATTT+AGG | 0.239428 | 1_4:-54879511 | None:intergenic |
| AGCCTCTCAATAGAAATTTA+TGG | 0.242421 | 1_4:+54881052 | Msa0170620:CDS |
| AGGTCCTTCGTCTCCTAAAC+TGG | 0.248856 | 1_4:-54881391 | None:intergenic |
| TTTACACTTTGGGGCTTTGA+TGG | 0.277518 | 1_4:-54883213 | None:intergenic |
| CTTGGAATTCATCCCAGTTT+AGG | 0.283771 | 1_4:+54881378 | Msa0170620:CDS |
| TTAGATGAGAGGGGAGAAAA+AGG | 0.305885 | 1_4:-54884097 | None:intergenic |
| AGCATCAATTCCTATGAATA+TGG | 0.306259 | 1_4:+54884309 | Msa0170620:CDS |
| ATCTCTTCTGTATGAACTTC+AGG | 0.314909 | 1_4:+54879985 | Msa0170620:CDS |
| CTGATTGTTTCATCTGGAAA+TGG | 0.315691 | 1_4:+54884653 | Msa0170620:three_prime_UTR |
| TTCTTTCTGATTGTTTCATC+TGG | 0.316024 | 1_4:+54884647 | Msa0170620:three_prime_UTR |
| CTTTGGGGCTTTGATGGGCT+TGG | 0.322206 | 1_4:-54883207 | None:intergenic |
| CCAAAGCTTCCTCTTTAACT+TGG | 0.337746 | 1_4:-54882145 | None:intergenic |
| CTTGGCTTGAGGAATATAAC+AGG | 0.339409 | 1_4:+54882225 | Msa0170620:CDS |
| AGGGAAGGACCGTACTCTTT+GGG | 0.339644 | 1_4:-54881076 | None:intergenic |
| AAGGGAAGGACCGTACTCTT+TGG | 0.346255 | 1_4:-54881077 | None:intergenic |
| ATAGGAATAGGCATTGTCTT+TGG | 0.353346 | 1_4:-54884268 | None:intergenic |
| GCAGGACCTGAAGAAGCTTC+AGG | 0.359076 | 1_4:+54883143 | Msa0170620:intron |
| GCGGAACAGGAGGCACTATA+TGG | 0.360736 | 1_4:+54883177 | Msa0170620:CDS |
| TCTGTCCCTGAAGCTTCTTC+AGG | 0.362272 | 1_4:-54883149 | None:intergenic |
| GTATCATTACTTACACTCTT+AGG | 0.365452 | 1_4:-54881411 | None:intergenic |
| AGCCGCAGTCATTGCCTTGC+AGG | 0.375037 | 1_4:-54884227 | None:intergenic |
| TTCTTGCATACTCTTCCTTC+AGG | 0.376287 | 1_4:-54880949 | None:intergenic |
| CCAAGTTAAAGAGGAAGCTT+TGG | 0.381142 | 1_4:+54882145 | Msa0170620:CDS |
| AGCAAGAACGCCGTAGGCAG+CGG | 0.384244 | 1_4:+54883031 | Msa0170620:CDS |
| AAGAGATCCACAAGTTGTTT+CGG | 0.388576 | 1_4:-54879969 | None:intergenic |
| GTTAGCATGATTACTTTGTT+TGG | 0.390024 | 1_4:+54884474 | Msa0170620:exon |
| GGTGCTCTTGAACTGTCTTT+AGG | 0.390963 | 1_4:-54881299 | None:intergenic |
| CAGAGGAGATTCTAATTCAT+AGG | 0.393747 | 1_4:-54884065 | None:intergenic |
| TAATTCTTCATCATTAATAT+GGG | 0.397741 | 1_4:-54884695 | None:intergenic |
| AACTTTAAGCAGACAGTCCT+TGG | 0.399140 | 1_4:+54881360 | Msa0170620:CDS |
| GGTGTTTCTTGTTTATCATC+AGG | 0.404694 | 1_4:+54883393 | Msa0170620:CDS |
| CAAAGGAATATTCAATCTCT+TGG | 0.405068 | 1_4:-54884426 | None:intergenic |
| TAGGTCCCTTCTTTACACTT+TGG | 0.405815 | 1_4:-54883224 | None:intergenic |
| CGAAGAGGACTGGATATTGC+TGG | 0.406123 | 1_4:+54884004 | Msa0170620:CDS |
| CCTCTTTAACTTGGGCAACC+TGG | 0.414721 | 1_4:-54882136 | None:intergenic |
| ATAGAAACTGACGACGGAAC+TGG | 0.416026 | 1_4:-54884340 | None:intergenic |
| CTTCAATCATTGAGAGTAAA+CGG | 0.421038 | 1_4:-54882981 | None:intergenic |
| CATTTAGTTCCAGAAATAGA+TGG | 0.427244 | 1_4:+54881942 | Msa0170620:CDS |
| TTACACTTTGGGGCTTTGAT+GGG | 0.427747 | 1_4:-54883212 | None:intergenic |
| GCCGTTGAAGCTATAGAATC+TGG | 0.431116 | 1_4:+54881978 | Msa0170620:CDS |
| GTATAGCAGCAGCCAGTTGC+TGG | 0.432531 | 1_4:-54881437 | None:intergenic |
| GGGTTGGTTAACAAAATTCC+AGG | 0.433979 | 1_4:+54882407 | Msa0170620:CDS |
| TTTGTTTATTTAGATAATAT+GGG | 0.439969 | 1_4:+54880110 | Msa0170620:intron |
| AATTCTCTTTGTTTAGTGCT+CGG | 0.444345 | 1_4:+54881333 | Msa0170620:CDS |
| TAATGATACCATCCAGCAAC+TGG | 0.446976 | 1_4:+54881425 | Msa0170620:CDS |
| AAATCTGAATCGAAATCAAA+TGG | 0.447075 | 1_4:+54879319 | Msa0170620:five_prime_UTR |
| CAACAACAATGTTGGAGCTC+TGG | 0.448652 | 1_4:+54881607 | Msa0170620:CDS |
| GATGCTGTTGAAGGTGTTGC+AGG | 0.449140 | 1_4:-54884292 | None:intergenic |
| CGAAGTTGGCGAGGCTGAGC+CGG | 0.449865 | 1_4:+54880134 | Msa0170620:CDS |
| AAGTCCTCGGACAAGGTGTT+TGG | 0.449901 | 1_4:-54881717 | None:intergenic |
| GGGACAGATGATAGCGGAAC+AGG | 0.452561 | 1_4:+54883164 | Msa0170620:CDS |
| GGTGTTGCAGGGATAGGAAT+AGG | 0.452662 | 1_4:-54884280 | None:intergenic |
| CAAAGCTTCCTCTTTAACTT+GGG | 0.453861 | 1_4:-54882144 | None:intergenic |
| GGAGTCATGGCCATATTCAT+AGG | 0.455664 | 1_4:-54884319 | None:intergenic |
| AGAGATTGAATATTCCTTTG+AGG | 0.459668 | 1_4:+54884429 | Msa0170620:CDS |
| GATTACAATAATGAAAATCA+TGG | 0.460252 | 1_4:-54884798 | None:intergenic |
| TTCTTGTAATGTACACAATC+AGG | 0.461624 | 1_4:-54884550 | None:intergenic |
| TCGAAAAGACATACTTGAAA+AGG | 0.461689 | 1_4:+54882169 | Msa0170620:CDS |
| CTTCAATAGGTGTATCCATC+AGG | 0.465528 | 1_4:-54881632 | None:intergenic |
| AAATGGTGTACGGCCGGGCC+GGG | 0.465600 | 1_4:-54879266 | None:intergenic |
| TTCTAGTCCGATCAAAATGC+TGG | 0.467416 | 1_4:+54880923 | Msa0170620:intron |
| TTTGATCAACTAACGGATGA+TGG | 0.469201 | 1_4:+54883372 | Msa0170620:CDS |
| GTTAATTTGAAAGTAATTTG+AGG | 0.474944 | 1_4:-54884823 | None:intergenic |
| AGTTGTTTCGGCTTGCGAAA+GGG | 0.475166 | 1_4:-54879957 | None:intergenic |
| GCCCCTCCGGTTGACATCCT+AGG | 0.475728 | 1_4:-54883243 | None:intergenic |
| AACATCTGCTGCTCTTCAAT+AGG | 0.476308 | 1_4:-54881645 | None:intergenic |
| TAATTAAAATGGTGTACGGC+CGG | 0.478140 | 1_4:-54879272 | None:intergenic |
| AACTGTTCAAGCACACATGC+AGG | 0.479534 | 1_4:-54882107 | None:intergenic |
| TACTTGAAAAGGTTGAGAAA+TGG | 0.480668 | 1_4:+54882180 | Msa0170620:CDS |
| GTTAAAATCCAGCAAAATGA+AGG | 0.480954 | 1_4:+54881869 | Msa0170620:CDS |
| GCAGCTATCTGTTCTGCAAT+GGG | 0.484337 | 1_4:+54880282 | Msa0170620:CDS |
| AAAATGGTGTACGGCCGGGC+CGG | 0.488834 | 1_4:-54879267 | None:intergenic |
| TTTGTAATTAAAATGGTGTA+CGG | 0.489119 | 1_4:-54879276 | None:intergenic |
| CAGGACCTGAAGAAGCTTCA+GGG | 0.489651 | 1_4:+54883144 | Msa0170620:intron |
| ACAGTAGCTGATGATGGAAC+TGG | 0.489930 | 1_4:-54884379 | None:intergenic |
| TGCAAGAATTCTTCCACAGC+TGG | 0.490130 | 1_4:+54880964 | Msa0170620:CDS |
| AGCTAGTAGAAGAGTCTCCA+TGG | 0.490767 | 1_4:+54883266 | Msa0170620:CDS |
| AAAGCCCCAAAGTGTAAAGA+AGG | 0.492967 | 1_4:+54883218 | Msa0170620:CDS |
| CACTTTGTCAACCTTTCTCA+CGG | 0.493688 | 1_4:-54883343 | None:intergenic |
| GGTTTCGAGTTCACATATGA+TGG | 0.493980 | 1_4:+54882823 | Msa0170620:CDS |
| CAAGTTAAAGAGGAAGCTTT+GGG | 0.494444 | 1_4:+54882146 | Msa0170620:CDS |
| GTATCGAAGGAAGGTAGATC+AGG | 0.495356 | 1_4:+54880203 | Msa0170620:CDS |
| TAGATAATATGGGACGAAGT+TGG | 0.496556 | 1_4:+54880120 | Msa0170620:intron |
| AAATGGTCTTAGCTGTGTAT+TGG | 0.496591 | 1_4:+54884670 | Msa0170620:three_prime_UTR |
| GTTCCTTGATGCAGGAATTG+TGG | 0.496600 | 1_4:+54882082 | Msa0170620:intron |
| TCATTCACGTGCCGTGAGAA+AGG | 0.499275 | 1_4:+54883332 | Msa0170620:CDS |
| GAATATTCAATCTCTTGGAC+TGG | 0.500200 | 1_4:-54884421 | None:intergenic |
| AGGTGGAGGTCGAAGTATCT+AGG | 0.500263 | 1_4:+54881838 | Msa0170620:intron |
| CTGCTGCTATACAACAACTA+CGG | 0.503563 | 1_4:+54881448 | Msa0170620:CDS |
| AACAGCATTCTGTCTCTGTC+CGG | 0.508810 | 1_4:-54880153 | None:intergenic |
| GCAAGAACGCCGTAGGCAGC+GGG | 0.509674 | 1_4:+54883032 | Msa0170620:CDS |
| GGTCCCTTCTTTACACTTTG+GGG | 0.510373 | 1_4:-54883222 | None:intergenic |
| GTTGTTTCGGCTTGCGAAAG+GGG | 0.510809 | 1_4:-54879956 | None:intergenic |
| AGATCTTGCAACAACAATGT+TGG | 0.511450 | 1_4:+54881599 | Msa0170620:CDS |
| TTCAGTTATTTCATCTTCTG+AGG | 0.512141 | 1_4:-54881694 | None:intergenic |
| GGCCATAAATTTCTATTGAG+AGG | 0.512269 | 1_4:-54881054 | None:intergenic |
| TTGAAGCATTGCTCCTCCCA+TGG | 0.517348 | 1_4:-54883283 | None:intergenic |
| CAGCATGTAATGAAGAGTCT+TGG | 0.519087 | 1_4:+54882207 | Msa0170620:CDS |
| ATGTGAAGCTCGAAGAGGAC+TGG | 0.520047 | 1_4:+54883994 | Msa0170620:intron |
| AAATGCACTTCAAAGTGAAA+AGG | 0.521153 | 1_4:+54881153 | Msa0170620:CDS |
| CCAGGTTGCCCAAGTTAAAG+AGG | 0.526082 | 1_4:+54882136 | Msa0170620:CDS |
| AAGTTGTTTCGGCTTGCGAA+AGG | 0.529607 | 1_4:-54879958 | None:intergenic |
| TGCTGCTATACAACAACTAC+GGG | 0.530438 | 1_4:+54881449 | Msa0170620:CDS |
| GCTTGAACAGTTTGAGCGCC+AGG | 0.530898 | 1_4:+54882118 | Msa0170620:CDS |
| TGCAGCTATCTGTTCTGCAA+TGG | 0.531132 | 1_4:+54880281 | Msa0170620:CDS |
| GTCTAGAGCTCAATTAAGAC+AGG | 0.532061 | 1_4:+54880233 | Msa0170620:CDS |
| ATGATACATTATTAGATGAG+AGG | 0.534448 | 1_4:-54884108 | None:intergenic |
| GCCGCAGTCATTGCCTTGCA+GGG | 0.534568 | 1_4:-54884226 | None:intergenic |
| GATGACAATCGATATAATGC+TGG | 0.534606 | 1_4:+54882341 | Msa0170620:CDS |
| AATATTCCTTTGAGGAAAGA+CGG | 0.535863 | 1_4:+54884437 | Msa0170620:CDS |
| TGATACATTATTAGATGAGA+GGG | 0.536566 | 1_4:-54884107 | None:intergenic |
| AAGGGACCTAGGATGTCAAC+CGG | 0.537940 | 1_4:+54883237 | Msa0170620:CDS |
| GCGACCCGTGCACATTAGAC+AGG | 0.538218 | 1_4:+54880308 | Msa0170620:CDS |
| ACAAATCAGTTTCATCTACA+AGG | 0.539176 | 1_4:-54881096 | None:intergenic |
| TCTTCTACTAGCTGCCCCTC+CGG | 0.543202 | 1_4:-54883256 | None:intergenic |
| TCTGTTCCACATCCTAGTCT+AGG | 0.548316 | 1_4:-54884578 | None:intergenic |
| ACCAGATTCTATAGCTTCAA+CGG | 0.551364 | 1_4:-54881979 | None:intergenic |
| TGCCTTGCAGGGACTAACAA+AGG | 0.551650 | 1_4:-54884215 | None:intergenic |
| AGCGAGCCGTCTTTCCTCAA+AGG | 0.553853 | 1_4:-54884443 | None:intergenic |
| ATAGGAATTGATGCTGTTGA+AGG | 0.558217 | 1_4:-54884301 | None:intergenic |
| GTCGTCAGTTTCTATGAATG+TGG | 0.558887 | 1_4:+54884348 | Msa0170620:CDS |
| GCTAAAGAAGAGAACAGAGC+TGG | 0.560308 | 1_4:+54881899 | Msa0170620:CDS |
| AGAAAGAGCAAGAACGCCGT+AGG | 0.561762 | 1_4:+54883025 | Msa0170620:CDS |
| ACTCCAACAGTAGCTGATGA+TGG | 0.561939 | 1_4:-54884385 | None:intergenic |
| GTTGAAGGTGTTGCAGGGAT+AGG | 0.565034 | 1_4:-54884286 | None:intergenic |
| AGCTGAGAAAGCACGTGGGT+TGG | 0.565102 | 1_4:+54882391 | Msa0170620:CDS |
| GTTCCATCATCAGCTACTGT+TGG | 0.565155 | 1_4:+54884382 | Msa0170620:CDS |
| AATTAAAATGGTGTACGGCC+GGG | 0.567639 | 1_4:-54879271 | None:intergenic |
| GCCTTGCAGGGACTAACAAA+GGG | 0.569387 | 1_4:-54884214 | None:intergenic |
| ATTTATGGCCCCAAAGAGTA+CGG | 0.569652 | 1_4:+54881067 | Msa0170620:CDS |
| TGAAAAGGTTGAGAAATGGT+TGG | 0.570979 | 1_4:+54882184 | Msa0170620:CDS |
| AATCGATATAATGCTGGAAG+AGG | 0.572803 | 1_4:+54882347 | Msa0170620:CDS |
| GTTGGAGCTCTGGAACCTGA+TGG | 0.573251 | 1_4:+54881617 | Msa0170620:CDS |
| TCTAACCTGTCTAATGTGCA+CGG | 0.577185 | 1_4:-54880313 | None:intergenic |
| ACCTAGGATGTCAACCGGAG+GGG | 0.578104 | 1_4:+54883242 | Msa0170620:CDS |
| TCGCAAGCCGAAACAACTTG+TGG | 0.580655 | 1_4:+54879962 | Msa0170620:CDS |
| GAAGAGGACTGGATATTGCT+GGG | 0.580872 | 1_4:+54884005 | Msa0170620:CDS |
| TCAGTTTCATCTACAAGGGA+AGG | 0.582245 | 1_4:-54881091 | None:intergenic |
| GCCCTTTGTTAGTCCCTGCA+AGG | 0.587185 | 1_4:+54884213 | Msa0170620:CDS |
| TCCGTTAGTTGATCAAAATG+AGG | 0.587229 | 1_4:-54883366 | None:intergenic |
| TAATGAAGAGTCTTGGCTTG+AGG | 0.588637 | 1_4:+54882214 | Msa0170620:CDS |
| GACCTAGGATGTCAACCGGA+GGG | 0.588763 | 1_4:+54883241 | Msa0170620:CDS |
| TAAATTACAGAGAATGCAGA+AGG | 0.595297 | 1_4:+54881476 | Msa0170620:CDS |
| GCTAGTAGAAGAGTCTCCAT+GGG | 0.596582 | 1_4:+54883267 | Msa0170620:CDS |
| CACGCAATTGATGAAGTCCT+CGG | 0.598665 | 1_4:-54881730 | None:intergenic |
| TCAAAATGCTGGAAGCCTGA+AGG | 0.598820 | 1_4:+54880934 | Msa0170620:CDS |
| TGACGACGGAACTGGAGTCA+TGG | 0.603098 | 1_4:-54884332 | None:intergenic |
| AGCAGCAGCCAGTTGCTGGA+TGG | 0.604245 | 1_4:-54881433 | None:intergenic |
| CTAACCTGTCTAATGTGCAC+GGG | 0.604378 | 1_4:-54880312 | None:intergenic |
| AGTGAACCTAGACTAGGATG+TGG | 0.604681 | 1_4:+54884572 | Msa0170620:three_prime_UTR |
| AGTGTCTTGAAGTGTATCGA+AGG | 0.608862 | 1_4:+54880190 | Msa0170620:CDS |
| ATTGATGAAGTCCTCGGACA+AGG | 0.609342 | 1_4:-54881724 | None:intergenic |
| TCTTGAAGTGTATCGAAGGA+AGG | 0.609979 | 1_4:+54880194 | Msa0170620:CDS |
| TGAAAAGTTGCCGAAAACAA+TGG | 0.611156 | 1_4:+54884177 | Msa0170620:CDS |
| GGGAAGGACCGTACTCTTTG+GGG | 0.612476 | 1_4:-54881075 | None:intergenic |
| GGTCCTTCGTCTCCTAAACT+GGG | 0.613789 | 1_4:-54881390 | None:intergenic |
| TTCCCATGTGAAGCTCGAAG+AGG | 0.616466 | 1_4:+54883989 | Msa0170620:intron |
| AAGAATTCTTCCACAGCTGG+AGG | 0.620680 | 1_4:+54880967 | Msa0170620:CDS |
| CTAAACTGGGATGAATTCCA+AGG | 0.627945 | 1_4:-54881377 | None:intergenic |
| AATTTGAAAGTAATTTGAGG+AGG | 0.630023 | 1_4:-54884820 | None:intergenic |
| AAGCCCCAAAGTGTAAAGAA+GGG | 0.632568 | 1_4:+54883219 | Msa0170620:CDS |
| AAAGAAGAGAACAGAGCTGG+AGG | 0.632727 | 1_4:+54881902 | Msa0170620:CDS |
| ACAGGCAATTGCTGATTGTG+AGG | 0.634787 | 1_4:+54880251 | Msa0170620:CDS |
| CAAATCAGTTTCATCTACAA+GGG | 0.635801 | 1_4:-54881095 | None:intergenic |
| AAAGAGAATTTAAAGTACAC+AGG | 0.635916 | 1_4:-54881320 | None:intergenic |
| AAAGTGTAAAGAAGGGACCT+AGG | 0.637789 | 1_4:+54883226 | Msa0170620:CDS |
| AATTAGAATCTCCTCTGACA+AGG | 0.638966 | 1_4:+54884071 | Msa0170620:CDS |
| GATACATTATTAGATGAGAG+GGG | 0.640613 | 1_4:-54884106 | None:intergenic |
| ACAAGAAGTGAACCTAGACT+AGG | 0.642154 | 1_4:+54884566 | Msa0170620:three_prime_UTR |
| AAGCGAGCTGAGAAAGCACG+TGG | 0.644154 | 1_4:+54882386 | Msa0170620:CDS |
| TGATGATGGAACTGGAGTCA+CGG | 0.648147 | 1_4:-54884371 | None:intergenic |
| GGCAATTGCTGATTGTGAGG+CGG | 0.649113 | 1_4:+54880254 | Msa0170620:CDS |
| ACTGTTCAAGCACACATGCA+GGG | 0.651011 | 1_4:-54882106 | None:intergenic |
| AGGACTATACCCGCTGCCTA+CGG | 0.651020 | 1_4:-54883041 | None:intergenic |
| ATGCTGTTGAAGGTGTTGCA+GGG | 0.651611 | 1_4:-54884291 | None:intergenic |
| AGTAGAAGAGTCTCCATGGG+AGG | 0.659640 | 1_4:+54883270 | Msa0170620:CDS |
| ACAGATGATAGCGGAACAGG+AGG | 0.664027 | 1_4:+54883167 | Msa0170620:CDS |
| TGAACCAAACACCTTGTCCG+AGG | 0.667411 | 1_4:+54881713 | Msa0170620:CDS |
| CATCCCAGTTTAGGAGACGA+AGG | 0.671726 | 1_4:+54881387 | Msa0170620:CDS |
| GGACCTAGGATGTCAACCGG+AGG | 0.683788 | 1_4:+54883240 | Msa0170620:CDS |
| AATATGGGACGAAGTTGGCG+AGG | 0.687856 | 1_4:+54880125 | Msa0170620:CDS |
| TTGGCTTGAGGAATATAACA+GGG | 0.700947 | 1_4:+54882226 | Msa0170620:CDS |
| GCTTCAGGGACAGATGATAG+CGG | 0.730467 | 1_4:+54883158 | Msa0170620:CDS |
| TCCCTGCAAGGCAATGACTG+CGG | 0.734203 | 1_4:+54884225 | Msa0170620:CDS |
| AGCGAGCTGAGAAAGCACGT+GGG | 0.746512 | 1_4:+54882387 | Msa0170620:CDS |
| ACATTCATAGAAACTGACGA+CGG | 0.786540 | 1_4:-54884346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATTGAATAAAAAAAT+GGG | - | chr1_4:54879650-54879669 | None:intergenic | 10.0% |
| !!! | TCATTTTTTTTTAACAATTT+AGG | + | chr1_4:54879695-54879714 | Msa0170620:intron | 10.0% |
| !!! | CATTTTTTTTTAACAATTTA+GGG | + | chr1_4:54879696-54879715 | Msa0170620:intron | 10.0% |
| !!! | GAATAAATTATAACTTTTTT+AGG | - | chr1_4:54880049-54880068 | None:intergenic | 10.0% |
| !! | ATTTGTTTATTTAGATAATA+TGG | + | chr1_4:54880109-54880128 | Msa0170620:intron | 10.0% |
| !! | TTTGTTTATTTAGATAATAT+GGG | + | chr1_4:54880110-54880129 | Msa0170620:intron | 10.0% |
| !! | TTGTAAATTGTAATAATATA+TGG | - | chr1_4:54880656-54880675 | None:intergenic | 10.0% |
| !! | ATATATTATTACAATTTACA+AGG | + | chr1_4:54880655-54880674 | Msa0170620:intron | 10.0% |
| !!! | ACTATATTTCTTTATTTTAT+AGG | + | chr1_4:54881781-54881800 | Msa0170620:intron | 10.0% |
| !!! | CTATATTTCTTTATTTTATA+GGG | + | chr1_4:54881782-54881801 | Msa0170620:intron | 10.0% |
| !! | AAAATTGAATAAAAAAATGG+GGG | - | chr1_4:54879648-54879667 | None:intergenic | 15.0% |
| !! | GAAAATTGAATAAAAAAATG+GGG | - | chr1_4:54879649-54879668 | None:intergenic | 15.0% |
| !! | CTGAAAATTGAATAAAAAAA+TGG | - | chr1_4:54879651-54879670 | None:intergenic | 15.0% |
| !!! | ATTTGAATTTTGAAAAAGTT+CGG | - | chr1_4:54879741-54879760 | None:intergenic | 15.0% |
| !! | AATTCAGAATCTAAAAATAT+AGG | - | chr1_4:54879877-54879896 | None:intergenic | 15.0% |
| !!! | TATTTTTTCATGTGATTAAT+TGG | + | chr1_4:54880475-54880494 | Msa0170620:intron | 15.0% |
| !! | TCTGATTTAATAATTATGTA+TGG | + | chr1_4:54882518-54882537 | Msa0170620:intron | 15.0% |
| !!! | AACAAAATTTTGAAGAAAAA+TGG | - | chr1_4:54882668-54882687 | None:intergenic | 15.0% |
| !! | ACTTATTAATTATTATTAGC+TGG | + | chr1_4:54882903-54882922 | Msa0170620:intron | 15.0% |
| !! | TAATTCTTCATCATTAATAT+GGG | - | chr1_4:54884698-54884717 | None:intergenic | 15.0% |
| !! | TTAATTCTTCATCATTAATA+TGG | - | chr1_4:54884699-54884718 | None:intergenic | 15.0% |
| !! | TTTGTAATTAAAATGGTGTA+CGG | - | chr1_4:54879279-54879298 | None:intergenic | 20.0% |
| !!! | CTTTTTCCTTAAAACTAAAA+CGG | + | chr1_4:54879373-54879392 | Msa0170620:five_prime_UTR | 20.0% |
| !! | AAATTGAATAAAAAAATGGG+GGG | - | chr1_4:54879647-54879666 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTTAAATGTTTCT+AGG | + | chr1_4:54879811-54879830 | Msa0170620:intron | 20.0% |
| !!! | GAATCCATAAAAAGAAATTT+TGG | - | chr1_4:54880511-54880530 | None:intergenic | 20.0% |
| !!! | ATGGAAAGTTGATATATAAT+TGG | + | chr1_4:54880705-54880724 | Msa0170620:intron | 20.0% |
| !! | CTATAGCTAAATACTTATTA+TGG | + | chr1_4:54881250-54881269 | Msa0170620:intron | 20.0% |
| !! | ACAAAATTCAAAAAATCAAG+TGG | - | chr1_4:54881529-54881548 | None:intergenic | 20.0% |
| !! | AGTTGTAAATCATTTATGTT+TGG | + | chr1_4:54881568-54881587 | Msa0170620:intron | 20.0% |
| !!! | TCTATCTATTTTAATTTGCA+AGG | + | chr1_4:54882007-54882026 | Msa0170620:intron | 20.0% |
| !! | ATAAAGATCTATAAAATACC+TGG | - | chr1_4:54882428-54882447 | None:intergenic | 20.0% |
| !! | CTAAAAAACCAAAAAAAAGA+CGG | - | chr1_4:54882959-54882978 | None:intergenic | 20.0% |
| !! | TGAATATACAGATAAATAAG+AGG | - | chr1_4:54883064-54883083 | None:intergenic | 20.0% |
| !!! | AAGTATCATTTAACAAGTTT+TGG | - | chr1_4:54883116-54883135 | None:intergenic | 20.0% |
| !!! | TATTTTTGGTTATACTTTTG+TGG | + | chr1_4:54883427-54883446 | Msa0170620:intron | 20.0% |
| !! | ATAAGAAGAGAAAATAAATG+TGG | - | chr1_4:54883634-54883653 | None:intergenic | 20.0% |
| !! | AATTTATGACACAAACATAA+AGG | - | chr1_4:54883851-54883870 | None:intergenic | 20.0% |
| !! | AATCATAAGTCAATTGTAAT+TGG | + | chr1_4:54884524-54884543 | Msa0170620:three_prime_UTR | 20.0% |
| !! | GATTACAATAATGAAAATCA+TGG | - | chr1_4:54884801-54884820 | None:intergenic | 20.0% |
| ! | AAATCTGAATCGAAATCAAA+TGG | + | chr1_4:54879319-54879338 | Msa0170620:five_prime_UTR | 25.0% |
| !!! | CGTTTTAGTTTTAAGGAAAA+AGG | - | chr1_4:54879375-54879394 | None:intergenic | 25.0% |
| !! | CTTCATTTCTTTTCCTAAAT+AGG | + | chr1_4:54879498-54879517 | Msa0170620:five_prime_UTR | 25.0% |
| ! | TGAATATAGTTAAGATTCGT+GGG | - | chr1_4:54879548-54879567 | None:intergenic | 25.0% |
| ! | TTGAATATAGTTAAGATTCG+TGG | - | chr1_4:54879549-54879568 | None:intergenic | 25.0% |
| !! | CAAGCCAAAATTTCTTTTTA+TGG | + | chr1_4:54880504-54880523 | Msa0170620:intron | 25.0% |
| !!! | CAATCTGCTCATTTTTTAAA+GGG | - | chr1_4:54880569-54880588 | None:intergenic | 25.0% |
| ! | AGCAAATTATGCATTAAAGA+TGG | - | chr1_4:54880818-54880837 | None:intergenic | 25.0% |
| ! | TATTGAGTTAGACTACTAAT+TGG | + | chr1_4:54880874-54880893 | Msa0170620:intron | 25.0% |
| ! | TGATGAAACAGAAAAAATGA+TGG | - | chr1_4:54881197-54881216 | None:intergenic | 25.0% |
| !! | AAAGAGAATTTAAAGTACAC+AGG | - | chr1_4:54881323-54881342 | None:intergenic | 25.0% |
| !!! | TTTAATTTGCAAGGTTTTTC+TGG | + | chr1_4:54882016-54882035 | Msa0170620:intron | 25.0% |
| ! | TATGAGTATGACTGAAAAAA+TGG | - | chr1_4:54882281-54882300 | None:intergenic | 25.0% |
| ! | TTATTGTTACGCATATGTTA+TGG | + | chr1_4:54882444-54882463 | Msa0170620:intron | 25.0% |
| ! | TGGGATAATTAACAATAGTT+TGG | + | chr1_4:54882623-54882642 | Msa0170620:intron | 25.0% |
| ! | ACCATTCCTATATATACAAA+GGG | - | chr1_4:54882760-54882779 | None:intergenic | 25.0% |
| ! | TACCATTCCTATATATACAA+AGG | - | chr1_4:54882761-54882780 | None:intergenic | 25.0% |
| !!! | AAATGATTCCGTCTTTTTTT+TGG | + | chr1_4:54882948-54882967 | Msa0170620:intron | 25.0% |
| !! | AGGTAGTTTAACTCTATTTT+TGG | + | chr1_4:54883413-54883432 | Msa0170620:intron | 25.0% |
| ! | AAAACTCTTATTACTTAGCA+AGG | - | chr1_4:54883462-54883481 | None:intergenic | 25.0% |
| ! | AAAAAGATCATAGATCAATC+AGG | + | chr1_4:54883506-54883525 | Msa0170620:intron | 25.0% |
| ! | CTAGTGATTCAAAAGAAAAT+TGG | + | chr1_4:54883602-54883621 | Msa0170620:intron | 25.0% |
| !! | ATTACTTTAGAGGAAAATGT+TGG | + | chr1_4:54883770-54883789 | Msa0170620:intron | 25.0% |
| ! | TGATACATTATTAGATGAGA+GGG | - | chr1_4:54884110-54884129 | None:intergenic | 25.0% |
| ! | ATGATACATTATTAGATGAG+AGG | - | chr1_4:54884111-54884130 | None:intergenic | 25.0% |
| !! | ACTTATTGATGAGATTTTTG+TGG | + | chr1_4:54884600-54884619 | Msa0170620:three_prime_UTR | 25.0% |
| !!! | ATGTAGCCGTTTTAGTTTTA+AGG | - | chr1_4:54879382-54879401 | None:intergenic | 30.0% |
| AACTATCATTCTAATTCAGC+TGG | - | chr1_4:54879849-54879868 | None:intergenic | 30.0% | |
| !!! | AATTTTGAAGTGACTGTGTT+TGG | + | chr1_4:54879893-54879912 | Msa0170620:intron | 30.0% |
| ! | TGTTTGTTACCTGAATACAA+TGG | + | chr1_4:54880374-54880393 | Msa0170620:intron | 30.0% |
| !! | TACCACTTTTGACTACTTAA+GGG | - | chr1_4:54880448-54880467 | None:intergenic | 30.0% |
| !! | ATACCACTTTTGACTACTTA+AGG | - | chr1_4:54880449-54880468 | None:intergenic | 30.0% |
| !!! | GCAATCTGCTCATTTTTTAA+AGG | - | chr1_4:54880570-54880589 | None:intergenic | 30.0% |
| ATCTATGTTCTGCTAGAATA+GGG | - | chr1_4:54880595-54880614 | None:intergenic | 30.0% | |
| TATCTATGTTCTGCTAGAAT+AGG | - | chr1_4:54880596-54880615 | None:intergenic | 30.0% | |
| CTTTCCATTTGAATTAGCAA+GGG | - | chr1_4:54880693-54880712 | None:intergenic | 30.0% | |
| ACTTTCCATTTGAATTAGCA+AGG | - | chr1_4:54880694-54880713 | None:intergenic | 30.0% | |
| AACTCAATAACATGTTCTCT+TGG | - | chr1_4:54880863-54880882 | None:intergenic | 30.0% | |
| AGTTAGACTACTAATTGGAT+TGG | + | chr1_4:54880879-54880898 | Msa0170620:intron | 30.0% | |
| AGCCTCTCAATAGAAATTTA+TGG | + | chr1_4:54881052-54881071 | Msa0170620:CDS | 30.0% | |
| CAAATCAGTTTCATCTACAA+GGG | - | chr1_4:54881098-54881117 | None:intergenic | 30.0% | |
| ACAAATCAGTTTCATCTACA+AGG | - | chr1_4:54881099-54881118 | None:intergenic | 30.0% | |
| !! | CAAATCTTCAAGTTTTCTCA+GGG | - | chr1_4:54881122-54881141 | None:intergenic | 30.0% |
| AAATGCACTTCAAAGTGAAA+AGG | + | chr1_4:54881153-54881172 | Msa0170620:CDS | 30.0% | |
| !! | ACAGAAAAAATGATGGATAG+AGG | - | chr1_4:54881190-54881209 | None:intergenic | 30.0% |
| ! | TTCATTCTTTTCATGCAGAT+CGG | + | chr1_4:54881273-54881292 | Msa0170620:intron | 30.0% |
| ! | AATTCTCTTTGTTTAGTGCT+CGG | + | chr1_4:54881333-54881352 | Msa0170620:CDS | 30.0% |
| GTATCATTACTTACACTCTT+AGG | - | chr1_4:54881414-54881433 | None:intergenic | 30.0% | |
| TAAATTACAGAGAATGCAGA+AGG | + | chr1_4:54881476-54881495 | Msa0170620:CDS | 30.0% | |
| GATTTACAACTATCAACCAA+GGG | - | chr1_4:54881559-54881578 | None:intergenic | 30.0% | |
| TGATTTACAACTATCAACCA+AGG | - | chr1_4:54881560-54881579 | None:intergenic | 30.0% | |
| ! | TTCAGTTATTTCATCTTCTG+AGG | - | chr1_4:54881697-54881716 | None:intergenic | 30.0% |
| GTTAAAATCCAGCAAAATGA+AGG | + | chr1_4:54881869-54881888 | Msa0170620:CDS | 30.0% | |
| ! | CATTTAGTTCCAGAAATAGA+TGG | + | chr1_4:54881942-54881961 | Msa0170620:CDS | 30.0% |
| TCGAAAAGACATACTTGAAA+AGG | + | chr1_4:54882169-54882188 | Msa0170620:CDS | 30.0% | |
| TACTTGAAAAGGTTGAGAAA+TGG | + | chr1_4:54882180-54882199 | Msa0170620:CDS | 30.0% | |
| ! | GTTCATTTTGTTCATTTTCC+AGG | + | chr1_4:54882319-54882338 | Msa0170620:intron | 30.0% |
| ! | AATTATCCCATTCTTGCTTT+TGG | - | chr1_4:54882613-54882632 | None:intergenic | 30.0% |
| GATTACAAATGAAGTCATAG+TGG | - | chr1_4:54882691-54882710 | None:intergenic | 30.0% | |
| CATTCCTATATATACAAAGG+GGG | - | chr1_4:54882758-54882777 | None:intergenic | 30.0% | |
| CCATTCCTATATATACAAAG+GGG | - | chr1_4:54882759-54882778 | None:intergenic | 30.0% | |
| ATAGCATGGGAAAAAGAAAA+AGG | + | chr1_4:54882802-54882821 | Msa0170620:CDS | 30.0% | |
| CTTCAATCATTGAGAGTAAA+CGG | - | chr1_4:54882984-54883003 | None:intergenic | 30.0% | |
| TACACACAACATCTATTTGT+TGG | - | chr1_4:54883087-54883106 | None:intergenic | 30.0% | |
| ! | AAATGATACTTTTCTGTTGC+AGG | + | chr1_4:54883125-54883144 | Msa0170620:intron | 30.0% |
| !!! | ATGATCTTTTTGAGTCAAAC+AGG | - | chr1_4:54883497-54883516 | None:intergenic | 30.0% |
| ! | TTTCTTTTGAATCACTAGTC+TGG | - | chr1_4:54883600-54883619 | None:intergenic | 30.0% |
| !! | GTTAGAGTTCTAAATCCATA+TGG | - | chr1_4:54883946-54883965 | None:intergenic | 30.0% |
| GATACATTATTAGATGAGAG+GGG | - | chr1_4:54884109-54884128 | None:intergenic | 30.0% | |
| !! | TTGTTAAGTGCCATTGTTTT+CGG | - | chr1_4:54884190-54884209 | None:intergenic | 30.0% |
| AGCATCAATTCCTATGAATA+TGG | + | chr1_4:54884309-54884328 | Msa0170620:CDS | 30.0% | |
| CAAAGGAATATTCAATCTCT+TGG | - | chr1_4:54884429-54884448 | None:intergenic | 30.0% | |
| AGAGATTGAATATTCCTTTG+AGG | + | chr1_4:54884429-54884448 | Msa0170620:CDS | 30.0% | |
| ! | AATATTCCTTTGAGGAAAGA+CGG | + | chr1_4:54884437-54884456 | Msa0170620:CDS | 30.0% |
| GTTAGCATGATTACTTTGTT+TGG | + | chr1_4:54884474-54884493 | Msa0170620:exon | 30.0% | |
| TTCTTGTAATGTACACAATC+AGG | - | chr1_4:54884553-54884572 | None:intergenic | 30.0% | |
| TTCTTTCTGATTGTTTCATC+TGG | + | chr1_4:54884647-54884666 | Msa0170620:three_prime_UTR | 30.0% | |
| !! | AATGAAAATCATGGTTTTGC+TGG | - | chr1_4:54884792-54884811 | None:intergenic | 30.0% |
| TAATTAAAATGGTGTACGGC+CGG | - | chr1_4:54879275-54879294 | None:intergenic | 35.0% | |
| AATGGTAGATAGATCTTAGC+TGG | - | chr1_4:54879612-54879631 | None:intergenic | 35.0% | |
| AAGAGATCCACAAGTTGTTT+CGG | - | chr1_4:54879972-54879991 | None:intergenic | 35.0% | |
| ATCTCTTCTGTATGAACTTC+AGG | + | chr1_4:54879985-54880004 | Msa0170620:CDS | 35.0% | |
| TAGATAATATGGGACGAAGT+TGG | + | chr1_4:54880120-54880139 | Msa0170620:intron | 35.0% | |
| !! | ACCACTTTTGACTACTTAAG+GGG | - | chr1_4:54880447-54880466 | None:intergenic | 35.0% |
| CGTTCTAACAAGTTACCTAA+GGG | - | chr1_4:54880545-54880564 | None:intergenic | 35.0% | |
| TCGTTCTAACAAGTTACCTA+AGG | - | chr1_4:54880546-54880565 | None:intergenic | 35.0% | |
| CTCACTAATAACAGACCAAA+GGG | + | chr1_4:54880617-54880636 | Msa0170620:intron | 35.0% | |
| GGCCATAAATTTCTATTGAG+AGG | - | chr1_4:54881057-54881076 | None:intergenic | 35.0% | |
| !! | GCAAATCTTCAAGTTTTCTC+AGG | - | chr1_4:54881123-54881142 | None:intergenic | 35.0% |
| ! | TCATTCTTTTCATGCAGATC+GGG | + | chr1_4:54881274-54881293 | Msa0170620:intron | 35.0% |
| ! | GAATTTTGTGTTCTTTCCCT+TGG | + | chr1_4:54881540-54881559 | Msa0170620:intron | 35.0% |
| AGATCTTGCAACAACAATGT+TGG | + | chr1_4:54881599-54881618 | Msa0170620:CDS | 35.0% | |
| CACGTTGCTTGAGTATAATA+TGG | + | chr1_4:54881758-54881777 | Msa0170620:intron | 35.0% | |
| !! | AAGAAGTATTAATGCCATGC+AGG | + | chr1_4:54881818-54881837 | Msa0170620:intron | 35.0% |
| ACCAGATTCTATAGCTTCAA+CGG | - | chr1_4:54881982-54882001 | None:intergenic | 35.0% | |
| ! | CAAAGCTTCCTCTTTAACTT+GGG | - | chr1_4:54882147-54882166 | None:intergenic | 35.0% |
| CAAGTTAAAGAGGAAGCTTT+GGG | + | chr1_4:54882146-54882165 | Msa0170620:CDS | 35.0% | |
| TGAAAAGGTTGAGAAATGGT+TGG | + | chr1_4:54882184-54882203 | Msa0170620:CDS | 35.0% | |
| ! | TTGGCTTGAGGAATATAACA+GGG | + | chr1_4:54882226-54882245 | Msa0170620:CDS | 35.0% |
| ! | CATTATATCGATTGTCATCC+TGG | - | chr1_4:54882340-54882359 | None:intergenic | 35.0% |
| GATGACAATCGATATAATGC+TGG | + | chr1_4:54882341-54882360 | Msa0170620:CDS | 35.0% | |
| AATCGATATAATGCTGGAAG+AGG | + | chr1_4:54882347-54882366 | Msa0170620:CDS | 35.0% | |
| TGAGTTCCAAAAGCAAGAAT+GGG | + | chr1_4:54882604-54882623 | Msa0170620:intron | 35.0% | |
| ! | AAATGATGATGTAGATGGCT+TGG | - | chr1_4:54882716-54882735 | None:intergenic | 35.0% |
| ! | TGCGTAAATGATGATGTAGA+TGG | - | chr1_4:54882721-54882740 | None:intergenic | 35.0% |
| TCTACATCATCATTTACGCA+TGG | + | chr1_4:54882721-54882740 | Msa0170620:intron | 35.0% | |
| ATCTCCCCCTTTGTATATAT+AGG | + | chr1_4:54882751-54882770 | Msa0170620:intron | 35.0% | |
| CCCCTTTGTATATATAGGAA+TGG | + | chr1_4:54882756-54882775 | Msa0170620:intron | 35.0% | |
| TGACGTCAAAAACTATAGCA+TGG | + | chr1_4:54882788-54882807 | Msa0170620:CDS | 35.0% | |
| GACGTCAAAAACTATAGCAT+GGG | + | chr1_4:54882789-54882808 | Msa0170620:CDS | 35.0% | |
| ! | GTAGCTTTTGAATCAGGTTT+TGG | - | chr1_4:54883312-54883331 | None:intergenic | 35.0% |
| ! | GAATGAGTAGCTTTTGAATC+AGG | - | chr1_4:54883318-54883337 | None:intergenic | 35.0% |
| !! | GCCTCATTTTGATCAACTAA+CGG | + | chr1_4:54883365-54883384 | Msa0170620:CDS | 35.0% |
| TCCGTTAGTTGATCAAAATG+AGG | - | chr1_4:54883369-54883388 | None:intergenic | 35.0% | |
| ! | TTTGATCAACTAACGGATGA+TGG | + | chr1_4:54883372-54883391 | Msa0170620:CDS | 35.0% |
| ! | GGTGTTTCTTGTTTATCATC+AGG | + | chr1_4:54883393-54883412 | Msa0170620:CDS | 35.0% |
| CAGATACACTAGTCAAAAGT+TGG | - | chr1_4:54883725-54883744 | None:intergenic | 35.0% | |
| !! | CAACTTTTGACTAGTGTATC+TGG | + | chr1_4:54883723-54883742 | Msa0170620:intron | 35.0% |
| CAAACATAAAGGAAAGAGCT+AGG | - | chr1_4:54883840-54883859 | None:intergenic | 35.0% | |
| CTTCACATGGGAAAAAAGAA+AGG | - | chr1_4:54883982-54884001 | None:intergenic | 35.0% | |
| CAGAGGAGATTCTAATTCAT+AGG | - | chr1_4:54884068-54884087 | None:intergenic | 35.0% | |
| AATTAGAATCTCCTCTGACA+AGG | + | chr1_4:54884071-54884090 | Msa0170620:CDS | 35.0% | |
| TGAAAAGTTGCCGAAAACAA+TGG | + | chr1_4:54884177-54884196 | Msa0170620:CDS | 35.0% | |
| ! | ATAGGAATAGGCATTGTCTT+TGG | - | chr1_4:54884271-54884290 | None:intergenic | 35.0% |
| ATAGGAATTGATGCTGTTGA+AGG | - | chr1_4:54884304-54884323 | None:intergenic | 35.0% | |
| ACATTCATAGAAACTGACGA+CGG | - | chr1_4:54884349-54884368 | None:intergenic | 35.0% | |
| GAATATTCAATCTCTTGGAC+TGG | - | chr1_4:54884424-54884443 | None:intergenic | 35.0% | |
| CTGATTGTTTCATCTGGAAA+TGG | + | chr1_4:54884653-54884672 | Msa0170620:three_prime_UTR | 35.0% | |
| ! | AAATGGTCTTAGCTGTGTAT+TGG | + | chr1_4:54884670-54884689 | Msa0170620:three_prime_UTR | 35.0% |
| AATTAAAATGGTGTACGGCC+GGG | - | chr1_4:54879274-54879293 | None:intergenic | 40.0% | |
| ! | CGAAGTGTACTGACCTATTT+AGG | - | chr1_4:54879514-54879533 | None:intergenic | 40.0% |
| TTAAGATTCGTGGGAATCTG+AGG | - | chr1_4:54879539-54879558 | None:intergenic | 40.0% | |
| TGACTGTGTTTGGCAGATAA+CGG | + | chr1_4:54879903-54879922 | Msa0170620:intron | 40.0% | |
| AGTGTCTTGAAGTGTATCGA+AGG | + | chr1_4:54880190-54880209 | Msa0170620:CDS | 40.0% | |
| TCTTGAAGTGTATCGAAGGA+AGG | + | chr1_4:54880194-54880213 | Msa0170620:CDS | 40.0% | |
| ! | GTCTAGAGCTCAATTAAGAC+AGG | + | chr1_4:54880233-54880252 | Msa0170620:CDS | 40.0% |
| TCTAACCTGTCTAATGTGCA+CGG | - | chr1_4:54880316-54880335 | None:intergenic | 40.0% | |
| GCACTTCTTCCATTGTATTC+AGG | - | chr1_4:54880386-54880405 | None:intergenic | 40.0% | |
| TCCCCTTAAGTAGTCAAAAG+TGG | + | chr1_4:54880443-54880462 | Msa0170620:intron | 40.0% | |
| ATTCCTGAAACAATGCCCTT+AGG | + | chr1_4:54880527-54880546 | Msa0170620:intron | 40.0% | |
| !! | TTACCTAAGGGCATTGTTTC+AGG | - | chr1_4:54880533-54880552 | None:intergenic | 40.0% |
| GCTCACTAATAACAGACCAA+AGG | + | chr1_4:54880616-54880635 | Msa0170620:intron | 40.0% | |
| ACTGCCCTTGCTAATTCAAA+TGG | + | chr1_4:54880686-54880705 | Msa0170620:intron | 40.0% | |
| TTCTAGTCCGATCAAAATGC+TGG | + | chr1_4:54880923-54880942 | Msa0170620:intron | 40.0% | |
| TTCTTGCATACTCTTCCTTC+AGG | - | chr1_4:54880952-54880971 | None:intergenic | 40.0% | |
| GGAGATGAAAAAGCAGAAGT+TGG | + | chr1_4:54880988-54881007 | Msa0170620:CDS | 40.0% | |
| ATTTATGGCCCCAAAGAGTA+CGG | + | chr1_4:54881067-54881086 | Msa0170620:CDS | 40.0% | |
| TCAGTTTCATCTACAAGGGA+AGG | - | chr1_4:54881094-54881113 | None:intergenic | 40.0% | |
| AACTTTAAGCAGACAGTCCT+TGG | + | chr1_4:54881360-54881379 | Msa0170620:CDS | 40.0% | |
| CTAAACTGGGATGAATTCCA+AGG | - | chr1_4:54881380-54881399 | None:intergenic | 40.0% | |
| CTTGGAATTCATCCCAGTTT+AGG | + | chr1_4:54881378-54881397 | Msa0170620:CDS | 40.0% | |
| TAATGATACCATCCAGCAAC+TGG | + | chr1_4:54881425-54881444 | Msa0170620:CDS | 40.0% | |
| CTGCTGCTATACAACAACTA+CGG | + | chr1_4:54881448-54881467 | Msa0170620:CDS | 40.0% | |
| TGCTGCTATACAACAACTAC+GGG | + | chr1_4:54881449-54881468 | Msa0170620:CDS | 40.0% | |
| CTTCAATAGGTGTATCCATC+AGG | - | chr1_4:54881635-54881654 | None:intergenic | 40.0% | |
| AACATCTGCTGCTCTTCAAT+AGG | - | chr1_4:54881648-54881667 | None:intergenic | 40.0% | |
| AAGTATTAATGCCATGCAGG+TGG | + | chr1_4:54881821-54881840 | Msa0170620:intron | 40.0% | |
| CCAAAGCTTCCTCTTTAACT+TGG | - | chr1_4:54882148-54882167 | None:intergenic | 40.0% | |
| CCAAGTTAAAGAGGAAGCTT+TGG | + | chr1_4:54882145-54882164 | Msa0170620:CDS | 40.0% | |
| CAGCATGTAATGAAGAGTCT+TGG | + | chr1_4:54882207-54882226 | Msa0170620:CDS | 40.0% | |
| ! | TAATGAAGAGTCTTGGCTTG+AGG | + | chr1_4:54882214-54882233 | Msa0170620:CDS | 40.0% |
| ! | CTTGGCTTGAGGAATATAAC+AGG | + | chr1_4:54882225-54882244 | Msa0170620:CDS | 40.0% |
| !! | GGGTTGGTTAACAAAATTCC+AGG | + | chr1_4:54882407-54882426 | Msa0170620:CDS | 40.0% |
| AATCAGACACTTGTGAATGC+AGG | - | chr1_4:54882505-54882524 | None:intergenic | 40.0% | |
| TATGTATGGAGCTTCAGCAA+AGG | + | chr1_4:54882532-54882551 | Msa0170620:intron | 40.0% | |
| GTGAGTTCCAAAAGCAAGAA+TGG | + | chr1_4:54882603-54882622 | Msa0170620:intron | 40.0% | |
| !! | GGTTTCGAGTTCACATATGA+TGG | + | chr1_4:54882823-54882842 | Msa0170620:CDS | 40.0% |
| !! | TTACACTTTGGGGCTTTGAT+GGG | - | chr1_4:54883215-54883234 | None:intergenic | 40.0% |
| !! | TTTACACTTTGGGGCTTTGA+TGG | - | chr1_4:54883216-54883235 | None:intergenic | 40.0% |
| AAAGCCCCAAAGTGTAAAGA+AGG | + | chr1_4:54883218-54883237 | Msa0170620:CDS | 40.0% | |
| AAGCCCCAAAGTGTAAAGAA+GGG | + | chr1_4:54883219-54883238 | Msa0170620:CDS | 40.0% | |
| AGGTCCCTTCTTTACACTTT+GGG | - | chr1_4:54883226-54883245 | None:intergenic | 40.0% | |
| TAGGTCCCTTCTTTACACTT+TGG | - | chr1_4:54883227-54883246 | None:intergenic | 40.0% | |
| AAAGTGTAAAGAAGGGACCT+AGG | + | chr1_4:54883226-54883245 | Msa0170620:CDS | 40.0% | |
| CACTTTGTCAACCTTTCTCA+CGG | - | chr1_4:54883346-54883365 | None:intergenic | 40.0% | |
| CATAGATCAATCAGGTCTCT+TGG | + | chr1_4:54883514-54883533 | Msa0170620:intron | 40.0% | |
| GCGTGAGTGAATTACTTTAG+AGG | + | chr1_4:54883760-54883779 | Msa0170620:intron | 40.0% | |
| GTCTTCCTCAATGACTGATA+TGG | - | chr1_4:54883796-54883815 | None:intergenic | 40.0% | |
| ACATCAACTGCTGATATAGC+TGG | + | chr1_4:54883814-54883833 | Msa0170620:intron | 40.0% | |
| ACACATTCTCGTGTACCATA+TGG | + | chr1_4:54883928-54883947 | Msa0170620:intron | 40.0% | |
| TTAGATGAGAGGGGAGAAAA+AGG | - | chr1_4:54884100-54884119 | None:intergenic | 40.0% | |
| ! | GTTTTCGGCAACTTTTCACT+CGG | - | chr1_4:54884175-54884194 | None:intergenic | 40.0% |
| GTCGTCAGTTTCTATGAATG+TGG | + | chr1_4:54884348-54884367 | Msa0170620:CDS | 40.0% | |
| ACAAGAAGTGAACCTAGACT+AGG | + | chr1_4:54884566-54884585 | Msa0170620:three_prime_UTR | 40.0% | |
| !! | ATCATGGTTTTGCTGGTACA+TGG | - | chr1_4:54884785-54884804 | None:intergenic | 40.0% |
| ! | TGCGAAAGGGGATCATTTTG+AGG | - | chr1_4:54879947-54879966 | None:intergenic | 45.0% |
| ! | AGTTGTTTCGGCTTGCGAAA+GGG | - | chr1_4:54879960-54879979 | None:intergenic | 45.0% |
| ! | AAGTTGTTTCGGCTTGCGAA+AGG | - | chr1_4:54879961-54879980 | None:intergenic | 45.0% |
| AACAGCATTCTGTCTCTGTC+CGG | - | chr1_4:54880156-54880175 | None:intergenic | 45.0% | |
| GTATCGAAGGAAGGTAGATC+AGG | + | chr1_4:54880203-54880222 | Msa0170620:CDS | 45.0% | |
| ! | ACAGGCAATTGCTGATTGTG+AGG | + | chr1_4:54880251-54880270 | Msa0170620:CDS | 45.0% |
| TGCAGCTATCTGTTCTGCAA+TGG | + | chr1_4:54880281-54880300 | Msa0170620:CDS | 45.0% | |
| GCAGCTATCTGTTCTGCAAT+GGG | + | chr1_4:54880282-54880301 | Msa0170620:CDS | 45.0% | |
| CTAACCTGTCTAATGTGCAC+GGG | - | chr1_4:54880315-54880334 | None:intergenic | 45.0% | |
| TACGGTGAGTTCGCTATCTA+TGG | - | chr1_4:54880750-54880769 | None:intergenic | 45.0% | |
| ! | GGAGAGGGGTCTTATAACTA+CGG | - | chr1_4:54880768-54880787 | None:intergenic | 45.0% |
| TATCAGACGCGACATTGATG+TGG | - | chr1_4:54880789-54880808 | None:intergenic | 45.0% | |
| !! | CAGGCTTCCAGCATTTTGAT+CGG | - | chr1_4:54880933-54880952 | None:intergenic | 45.0% |
| TCAAAATGCTGGAAGCCTGA+AGG | + | chr1_4:54880934-54880953 | Msa0170620:CDS | 45.0% | |
| TGCAAGAATTCTTCCACAGC+TGG | + | chr1_4:54880964-54880983 | Msa0170620:CDS | 45.0% | |
| AAGAATTCTTCCACAGCTGG+AGG | + | chr1_4:54880967-54880986 | Msa0170620:CDS | 45.0% | |
| ! | TTTTTCATCTCCTCCAGCTG+TGG | - | chr1_4:54880980-54880999 | None:intergenic | 45.0% |
| GGTGCTCTTGAACTGTCTTT+AGG | - | chr1_4:54881302-54881321 | None:intergenic | 45.0% | |
| CAACAACAATGTTGGAGCTC+TGG | + | chr1_4:54881607-54881626 | Msa0170620:CDS | 45.0% | |
| ATTGATGAAGTCCTCGGACA+AGG | - | chr1_4:54881727-54881746 | None:intergenic | 45.0% | |
| CACGCAATTGATGAAGTCCT+CGG | - | chr1_4:54881733-54881752 | None:intergenic | 45.0% | |
| TATTAATGCCATGCAGGTGG+AGG | + | chr1_4:54881824-54881843 | Msa0170620:intron | 45.0% | |
| ! | CACAAGCTCCTTCATTTTGC+TGG | - | chr1_4:54881880-54881899 | None:intergenic | 45.0% |
| GCTAAAGAAGAGAACAGAGC+TGG | + | chr1_4:54881899-54881918 | Msa0170620:CDS | 45.0% | |
| AAAGAAGAGAACAGAGCTGG+AGG | + | chr1_4:54881902-54881921 | Msa0170620:CDS | 45.0% | |
| TCGACTGCACCATCTATTTC+TGG | - | chr1_4:54881954-54881973 | None:intergenic | 45.0% | |
| GCCGTTGAAGCTATAGAATC+TGG | + | chr1_4:54881978-54881997 | Msa0170620:CDS | 45.0% | |
| CAATTCCTGCATCAAGGAAC+AGG | - | chr1_4:54882082-54882101 | None:intergenic | 45.0% | |
| GTTCCTTGATGCAGGAATTG+TGG | + | chr1_4:54882082-54882101 | Msa0170620:intron | 45.0% | |
| ACTGTTCAAGCACACATGCA+GGG | - | chr1_4:54882109-54882128 | None:intergenic | 45.0% | |
| AACTGTTCAAGCACACATGC+AGG | - | chr1_4:54882110-54882129 | None:intergenic | 45.0% | |
| GGTCCCTTCTTTACACTTTG+GGG | - | chr1_4:54883225-54883244 | None:intergenic | 45.0% | |
| AGCTAGTAGAAGAGTCTCCA+TGG | + | chr1_4:54883266-54883285 | Msa0170620:CDS | 45.0% | |
| GCTAGTAGAAGAGTCTCCAT+GGG | + | chr1_4:54883267-54883286 | Msa0170620:CDS | 45.0% | |
| ! | CAATCAGGTCTCTTGGTTTG+TGG | + | chr1_4:54883521-54883540 | Msa0170620:intron | 45.0% |
| ! | TGGTTTGTGGCTAAAGTGCA+AGG | + | chr1_4:54883534-54883553 | Msa0170620:intron | 45.0% |
| GGTTTGTGGCTAAAGTGCAA+GGG | + | chr1_4:54883535-54883554 | Msa0170620:intron | 45.0% | |
| GTTTGTGGCTAAAGTGCAAG+GGG | + | chr1_4:54883536-54883555 | Msa0170620:intron | 45.0% | |
| TTTGTGGCTAAAGTGCAAGG+GGG | + | chr1_4:54883537-54883556 | Msa0170620:intron | 45.0% | |
| !! | CAAGGGGGTTGTTTGCTATA+GGG | + | chr1_4:54883552-54883571 | Msa0170620:intron | 45.0% |
| GTTGGCCATATCAGTCATTG+AGG | + | chr1_4:54883788-54883807 | Msa0170620:intron | 45.0% | |
| AGTGAACGCGTGTATGAGTT+AGG | - | chr1_4:54883903-54883922 | None:intergenic | 45.0% | |
| GAAGAGGACTGGATATTGCT+GGG | + | chr1_4:54884005-54884024 | Msa0170620:CDS | 45.0% | |
| !!! | CCAAGTGAGTGCTTTTTTGC+AGG | - | chr1_4:54884034-54884053 | None:intergenic | 45.0% |
| !! | CCTGCAAAAAAGCACTCACT+TGG | + | chr1_4:54884031-54884050 | Msa0170620:CDS | 45.0% |
| GAAAAAGGTTGCCTTGTCAG+AGG | - | chr1_4:54884085-54884104 | None:intergenic | 45.0% | |
| !! | ATGCTGTTGAAGGTGTTGCA+GGG | - | chr1_4:54884294-54884313 | None:intergenic | 45.0% |
| GGAGTCATGGCCATATTCAT+AGG | - | chr1_4:54884322-54884341 | None:intergenic | 45.0% | |
| ATAGAAACTGACGACGGAAC+TGG | - | chr1_4:54884343-54884362 | None:intergenic | 45.0% | |
| !! | TGATGATGGAACTGGAGTCA+CGG | - | chr1_4:54884374-54884393 | None:intergenic | 45.0% |
| !! | ACAGTAGCTGATGATGGAAC+TGG | - | chr1_4:54884382-54884401 | None:intergenic | 45.0% |
| GTTCCATCATCAGCTACTGT+TGG | + | chr1_4:54884382-54884401 | Msa0170620:CDS | 45.0% | |
| ACTCCAACAGTAGCTGATGA+TGG | - | chr1_4:54884388-54884407 | None:intergenic | 45.0% | |
| AGTGAACCTAGACTAGGATG+TGG | + | chr1_4:54884572-54884591 | Msa0170620:three_prime_UTR | 45.0% | |
| TCTGTTCCACATCCTAGTCT+AGG | - | chr1_4:54884581-54884600 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTTGTAATTAAAA+TGG | - | chr1_4:54879286-54879305 | None:intergenic | 5.0% |
| ! | CGAGCGCTTTTGAACGTCAA+CGG | + | chr1_4:54879346-54879365 | Msa0170620:five_prime_UTR | 50.0% |
| GGGGGGAAACAGTAGAGAAA+TGG | - | chr1_4:54879630-54879649 | None:intergenic | 50.0% | |
| ! | GTTGTTTCGGCTTGCGAAAG+GGG | - | chr1_4:54879959-54879978 | None:intergenic | 50.0% |
| TCGCAAGCCGAAACAACTTG+TGG | + | chr1_4:54879962-54879981 | Msa0170620:CDS | 50.0% | |
| AATATGGGACGAAGTTGGCG+AGG | + | chr1_4:54880125-54880144 | Msa0170620:CDS | 50.0% | |
| ! | GGCAATTGCTGATTGTGAGG+CGG | + | chr1_4:54880254-54880273 | Msa0170620:CDS | 50.0% |
| GGTTCGAACGACTTACCCTT+TGG | - | chr1_4:54880635-54880654 | None:intergenic | 50.0% | |
| ACGCGACATTGATGTGGAGA+GGG | - | chr1_4:54880783-54880802 | None:intergenic | 50.0% | |
| AGGGAAGGACCGTACTCTTT+GGG | - | chr1_4:54881079-54881098 | None:intergenic | 50.0% | |
| AAGGGAAGGACCGTACTCTT+TGG | - | chr1_4:54881080-54881099 | None:intergenic | 50.0% | |
| CATCCCAGTTTAGGAGACGA+AGG | + | chr1_4:54881387-54881406 | Msa0170620:CDS | 50.0% | |
| GGTCCTTCGTCTCCTAAACT+GGG | - | chr1_4:54881393-54881412 | None:intergenic | 50.0% | |
| AGGTCCTTCGTCTCCTAAAC+TGG | - | chr1_4:54881394-54881413 | None:intergenic | 50.0% | |
| TGAACCAAACACCTTGTCCG+AGG | + | chr1_4:54881713-54881732 | Msa0170620:CDS | 50.0% | |
| ! | AAGTCCTCGGACAAGGTGTT+TGG | - | chr1_4:54881720-54881739 | None:intergenic | 50.0% |
| ! | AGGTGGAGGTCGAAGTATCT+AGG | + | chr1_4:54881838-54881857 | Msa0170620:intron | 50.0% |
| GGTCCACAATTCCTGCATCA+AGG | - | chr1_4:54882088-54882107 | None:intergenic | 50.0% | |
| !! | CCTCTTTAACTTGGGCAACC+TGG | - | chr1_4:54882139-54882158 | None:intergenic | 50.0% |
| CCAGGTTGCCCAAGTTAAAG+AGG | + | chr1_4:54882136-54882155 | Msa0170620:CDS | 50.0% | |
| AGAAAGAGCAAGAACGCCGT+AGG | + | chr1_4:54883025-54883044 | Msa0170620:CDS | 50.0% | |
| CAGGACCTGAAGAAGCTTCA+GGG | + | chr1_4:54883144-54883163 | Msa0170620:intron | 50.0% | |
| TCTGTCCCTGAAGCTTCTTC+AGG | - | chr1_4:54883152-54883171 | None:intergenic | 50.0% | |
| GCTTCAGGGACAGATGATAG+CGG | + | chr1_4:54883158-54883177 | Msa0170620:CDS | 50.0% | |
| !! | ACAGATGATAGCGGAACAGG+AGG | + | chr1_4:54883167-54883186 | Msa0170620:CDS | 50.0% |
| AAGGGACCTAGGATGTCAAC+CGG | + | chr1_4:54883237-54883256 | Msa0170620:CDS | 50.0% | |
| AGTAGAAGAGTCTCCATGGG+AGG | + | chr1_4:54883270-54883289 | Msa0170620:CDS | 50.0% | |
| !! | TTGAAGCATTGCTCCTCCCA+TGG | - | chr1_4:54883286-54883305 | None:intergenic | 50.0% |
| TCATTCACGTGCCGTGAGAA+AGG | + | chr1_4:54883332-54883351 | Msa0170620:CDS | 50.0% | |
| !! | GCAAGGGGGTTGTTTGCTAT+AGG | + | chr1_4:54883551-54883570 | Msa0170620:intron | 50.0% |
| !! | GGGGTTGTTTGCTATAGGGT+GGG | + | chr1_4:54883556-54883575 | Msa0170620:intron | 50.0% |
| !! | GGGTTGTTTGCTATAGGGTG+GGG | + | chr1_4:54883557-54883576 | Msa0170620:intron | 50.0% |
| !! | GTTTGCTATAGGGTGGGGAT+AGG | + | chr1_4:54883562-54883581 | Msa0170620:intron | 50.0% |
| ! | GGTGGGGATAGGTTTTCTCT+AGG | + | chr1_4:54883573-54883592 | Msa0170620:intron | 50.0% |
| TTCACTCACGCTCATGTCAG+AGG | - | chr1_4:54883751-54883770 | None:intergenic | 50.0% | |
| TTCCCATGTGAAGCTCGAAG+AGG | + | chr1_4:54883989-54884008 | Msa0170620:intron | 50.0% | |
| GTCCTCTTCGAGCTTCACAT+GGG | - | chr1_4:54883994-54884013 | None:intergenic | 50.0% | |
| AGTCCTCTTCGAGCTTCACA+TGG | - | chr1_4:54883995-54884014 | None:intergenic | 50.0% | |
| ATGTGAAGCTCGAAGAGGAC+TGG | + | chr1_4:54883994-54884013 | Msa0170620:intron | 50.0% | |
| CGAAGAGGACTGGATATTGC+TGG | + | chr1_4:54884004-54884023 | Msa0170620:CDS | 50.0% | |
| GCCTTGCAGGGACTAACAAA+GGG | - | chr1_4:54884217-54884236 | None:intergenic | 50.0% | |
| TGCCTTGCAGGGACTAACAA+AGG | - | chr1_4:54884218-54884237 | None:intergenic | 50.0% | |
| ! | GGTGTTGCAGGGATAGGAAT+AGG | - | chr1_4:54884283-54884302 | None:intergenic | 50.0% |
| !! | GTTGAAGGTGTTGCAGGGAT+AGG | - | chr1_4:54884289-54884308 | None:intergenic | 50.0% |
| !! | GATGCTGTTGAAGGTGTTGC+AGG | - | chr1_4:54884295-54884314 | None:intergenic | 50.0% |
| CGCGACATTGATGTGGAGAG+GGG | - | chr1_4:54880782-54880801 | None:intergenic | 55.0% | |
| GACGCGACATTGATGTGGAG+AGG | - | chr1_4:54880784-54880803 | None:intergenic | 55.0% | |
| GGGAAGGACCGTACTCTTTG+GGG | - | chr1_4:54881078-54881097 | None:intergenic | 55.0% | |
| GTATAGCAGCAGCCAGTTGC+TGG | - | chr1_4:54881440-54881459 | None:intergenic | 55.0% | |
| !! | GTTGGAGCTCTGGAACCTGA+TGG | + | chr1_4:54881617-54881636 | Msa0170620:CDS | 55.0% |
| TACTTCGACCTCCACCTGCA+TGG | - | chr1_4:54881835-54881854 | None:intergenic | 55.0% | |
| CTCTGCCTGTTCCTTGATGC+AGG | + | chr1_4:54882074-54882093 | Msa0170620:intron | 55.0% | |
| GCTTGAACAGTTTGAGCGCC+AGG | + | chr1_4:54882118-54882137 | Msa0170620:CDS | 55.0% | |
| ! | AAGCGAGCTGAGAAAGCACG+TGG | + | chr1_4:54882386-54882405 | Msa0170620:CDS | 55.0% |
| ! | AGCGAGCTGAGAAAGCACGT+GGG | + | chr1_4:54882387-54882406 | Msa0170620:CDS | 55.0% |
| ! | AGCTGAGAAAGCACGTGGGT+TGG | + | chr1_4:54882391-54882410 | Msa0170620:CDS | 55.0% |
| AGGACTATACCCGCTGCCTA+CGG | - | chr1_4:54883044-54883063 | None:intergenic | 55.0% | |
| GCAGGACCTGAAGAAGCTTC+AGG | + | chr1_4:54883143-54883162 | Msa0170620:intron | 55.0% | |
| !! | GGGACAGATGATAGCGGAAC+AGG | + | chr1_4:54883164-54883183 | Msa0170620:CDS | 55.0% |
| !! | GCGGAACAGGAGGCACTATA+TGG | + | chr1_4:54883177-54883196 | Msa0170620:CDS | 55.0% |
| !! | CTTTGGGGCTTTGATGGGCT+TGG | - | chr1_4:54883210-54883229 | None:intergenic | 55.0% |
| GACCTAGGATGTCAACCGGA+GGG | + | chr1_4:54883241-54883260 | Msa0170620:CDS | 55.0% | |
| ACCTAGGATGTCAACCGGAG+GGG | + | chr1_4:54883242-54883261 | Msa0170620:CDS | 55.0% | |
| TCTTCTACTAGCTGCCCCTC+CGG | - | chr1_4:54883259-54883278 | None:intergenic | 55.0% | |
| !! | GGGGGTTGTTTGCTATAGGG+TGG | + | chr1_4:54883555-54883574 | Msa0170620:intron | 55.0% |
| GCCCTTTGTTAGTCCCTGCA+AGG | + | chr1_4:54884213-54884232 | Msa0170620:CDS | 55.0% | |
| TCCCTGCAAGGCAATGACTG+CGG | + | chr1_4:54884225-54884244 | Msa0170620:CDS | 55.0% | |
| TGACGACGGAACTGGAGTCA+TGG | - | chr1_4:54884335-54884354 | None:intergenic | 55.0% | |
| AGCGAGCCGTCTTTCCTCAA+AGG | - | chr1_4:54884446-54884465 | None:intergenic | 55.0% | |
| AAAATGGTGTACGGCCGGGC+CGG | - | chr1_4:54879270-54879289 | None:intergenic | 60.0% | |
| GCGACCCGTGCACATTAGAC+AGG | + | chr1_4:54880308-54880327 | Msa0170620:CDS | 60.0% | |
| AGCAGCAGCCAGTTGCTGGA+TGG | - | chr1_4:54881436-54881455 | None:intergenic | 60.0% | |
| AGCAAGAACGCCGTAGGCAG+CGG | + | chr1_4:54883031-54883050 | Msa0170620:CDS | 60.0% | |
| GGACCTAGGATGTCAACCGG+AGG | + | chr1_4:54883240-54883259 | Msa0170620:CDS | 60.0% | |
| GCCGCAGTCATTGCCTTGCA+GGG | - | chr1_4:54884229-54884248 | None:intergenic | 60.0% | |
| AGCCGCAGTCATTGCCTTGC+AGG | - | chr1_4:54884230-54884249 | None:intergenic | 60.0% | |
| CGAAGTTGGCGAGGCTGAGC+CGG | + | chr1_4:54880134-54880153 | Msa0170620:CDS | 65.0% | |
| GCAAGAACGCCGTAGGCAGC+GGG | + | chr1_4:54883032-54883051 | Msa0170620:CDS | 65.0% | |
| GCCCCTCCGGTTGACATCCT+AGG | - | chr1_4:54883246-54883265 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54879267 | 54884840 | 54879267 | ID=Msa0170620;Name=Msa0170620 |
| chr1_4 | mRNA | 54879267 | 54884840 | 54879267 | ID=Msa0170620-mRNA-1;Parent=Msa0170620;Name=Msa0170620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=256|1|1|1|0.84|0.71|14|327|728 |
| chr1_4 | exon | 54879267 | 54879519 | 54879267 | ID=Msa0170620-mRNA-1:exon:16371;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54879932 | 54880006 | 54879932 | ID=Msa0170620-mRNA-1:exon:16372;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54880123 | 54880329 | 54880123 | ID=Msa0170620-mRNA-1:exon:16373;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54880929 | 54881174 | 54880929 | ID=Msa0170620-mRNA-1:exon:16374;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54881291 | 54881497 | 54881291 | ID=Msa0170620-mRNA-1:exon:16375;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54881594 | 54881749 | 54881594 | ID=Msa0170620-mRNA-1:exon:16376;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54881840 | 54881999 | 54881840 | ID=Msa0170620-mRNA-1:exon:16377;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54882096 | 54882247 | 54882096 | ID=Msa0170620-mRNA-1:exon:16378;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54882341 | 54882428 | 54882341 | ID=Msa0170620-mRNA-1:exon:16379;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54882773 | 54882846 | 54882773 | ID=Msa0170620-mRNA-1:exon:16380;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54882979 | 54883053 | 54882979 | ID=Msa0170620-mRNA-1:exon:16381;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54883147 | 54883414 | 54883147 | ID=Msa0170620-mRNA-1:exon:16382;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54884002 | 54884706 | 54884002 | ID=Msa0170620-mRNA-1:exon:16383;Parent=Msa0170620-mRNA-1 |
| chr1_4 | exon | 54884737 | 54884840 | 54884737 | ID=Msa0170620-mRNA-1:exon:16384;Parent=Msa0170620-mRNA-1 |
| chr1_4 | five_prime_UTR | 54879267 | 54879519 | 54879267 | ID=Msa0170620-mRNA-1:five_prime_utr;Parent=Msa0170620-mRNA-1 |
| chr1_4 | five_prime_UTR | 54879932 | 54879934 | 54879932 | ID=Msa0170620-mRNA-1:five_prime_utr;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54879935 | 54880006 | 54879935 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54880123 | 54880329 | 54880123 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54880929 | 54881174 | 54880929 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54881291 | 54881497 | 54881291 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54881594 | 54881749 | 54881594 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54881840 | 54881999 | 54881840 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54882096 | 54882247 | 54882096 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54882341 | 54882428 | 54882341 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54882773 | 54882846 | 54882773 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54882979 | 54883053 | 54882979 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54883147 | 54883414 | 54883147 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | CDS | 54884002 | 54884483 | 54884002 | ID=Msa0170620-mRNA-1:cds;Parent=Msa0170620-mRNA-1 |
| chr1_4 | three_prime_UTR | 54884484 | 54884706 | 54884484 | ID=Msa0170620-mRNA-1:three_prime_utr;Parent=Msa0170620-mRNA-1 |
| chr1_4 | three_prime_UTR | 54884737 | 54884840 | 54884737 | ID=Msa0170620-mRNA-1:three_prime_utr;Parent=Msa0170620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
