Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176660 | XP_013469441.1 | 95.122 | 205 | 6 | 3 | 1 | 201 | 2 | 206 | 1.10e-135 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176660 | A0A072VNA0 | 95.122 | 205 | 6 | 3 | 1 | 201 | 2 | 206 | 5.27e-136 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046800 | Msa0176660 | 0.816060 | 6.718561e-52 | -8.615850e-47 |
| Msa0102290 | Msa0176660 | 0.806285 | 8.861448e-50 | -8.615850e-47 |
| Msa0127510 | Msa0176660 | 0.809702 | 1.660182e-50 | -8.615850e-47 |
| Msa0155550 | Msa0176660 | 0.806063 | 9.864776e-50 | -8.615850e-47 |
| Msa0176660 | Msa0182610 | 0.814479 | 1.508843e-51 | -8.615850e-47 |
| Msa0176660 | Msa0216790 | 0.801997 | 6.915028e-49 | -8.615850e-47 |
| Msa0176660 | Msa0224180 | 0.827203 | 1.780892e-54 | -8.615850e-47 |
| Msa0176660 | Msa0234930 | 0.814134 | 1.798062e-51 | -8.615850e-47 |
| Msa0176660 | Msa0273270 | 0.810201 | 1.296817e-50 | -8.615850e-47 |
| Msa0176660 | Msa0280120 | 0.818010 | 2.450338e-52 | -8.615850e-47 |
| Msa0176660 | Msa0295730 | 0.800425 | 1.449691e-48 | -8.615850e-47 |
| Msa0176660 | Msa0322480 | 0.840270 | 9.622802e-58 | -8.615850e-47 |
| Msa0176660 | Msa0390760 | 0.829529 | 4.892626e-55 | -8.615850e-47 |
| Msa0176660 | Msa0400890 | 0.806996 | 6.271377e-50 | -8.615850e-47 |
| Msa0176660 | Msa0544780 | 0.821537 | 3.830083e-53 | -8.615850e-47 |
| Msa0176660 | Msa0581240 | 0.841284 | 5.217178e-58 | -8.615850e-47 |
| Msa0176660 | Msa0598080 | 0.800211 | 1.602657e-48 | -8.615850e-47 |
| Msa0176660 | Msa0653690 | 0.854267 | 1.378762e-61 | -8.615850e-47 |
| Msa0176660 | Msa0679270 | 0.828837 | 7.200058e-55 | -8.615850e-47 |
| Msa0176660 | Msa0699200 | 0.809992 | 1.438271e-50 | -8.615850e-47 |
| Msa0176660 | Msa0711860 | 0.837187 | 6.026167e-57 | -8.615850e-47 |
| Msa0176660 | Msa0773080 | 0.845939 | 2.970433e-59 | -8.615850e-47 |
| Msa0176660 | Msa0783280 | 0.809199 | 2.128750e-50 | -8.615850e-47 |
| Msa0176660 | Msa0799150 | 0.823135 | 1.630311e-53 | -8.615850e-47 |
| Msa0176660 | Msa1013560 | 0.800668 | 1.293788e-48 | -8.615850e-47 |
| Msa0176660 | Msa1163230 | 0.830753 | 2.459585e-55 | -8.615850e-47 |
| Msa0176660 | Msa1209240 | 0.833210 | 6.077145e-56 | -8.615850e-47 |
| Msa0176660 | Msa1244770 | 0.806151 | 9.454077e-50 | -8.615850e-47 |
| Msa0176660 | Msa1250490 | 0.801950 | 7.069354e-49 | -8.615850e-47 |
| Msa0176660 | Msa1312800 | 0.817601 | 3.029842e-52 | -8.615850e-47 |
| Msa0176660 | Msa1312840 | 0.837806 | 4.182877e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176660 | MtrunA17_Chr1g0199181 | 95.122 | 205 | 6 | 3 | 1 | 201 | 2 | 206 | 1.01e-139 | 389 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176660 | AT3G10405.1 | 58.642 | 162 | 64 | 1 | 43 | 201 | 46 | 207 | 7.02e-63 | 195 |
Find 59 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGAATATGTTTCTTATC+TGG | 0.245819 | 1_4:+63188621 | Msa0176660:CDS |
| CGGATAAAATAAAAGAATTT+AGG | 0.257401 | 1_4:+63186234 | Msa0176660:five_prime_UTR |
| GTTATTATTAGAGTTGAAAA+TGG | 0.281416 | 1_4:-63186395 | None:intergenic |
| CTAGGATCCTCAACATTTAT+AGG | 0.312734 | 1_4:-63186760 | None:intergenic |
| TTCAAATCCCAACAACAATA+AGG | 0.349379 | 1_4:-63187059 | None:intergenic |
| TTTGCAGGCCTTATTGTTGT+TGG | 0.358466 | 1_4:+63187051 | Msa0176660:intron |
| TGAATCTTCAACTAACTCAT+TGG | 0.358705 | 1_4:-63186728 | None:intergenic |
| ATACAGATGATATGGATATA+TGG | 0.365634 | 1_4:+63186153 | None:intergenic |
| TTGCAGGCCTTATTGTTGTT+GGG | 0.374699 | 1_4:+63187052 | Msa0176660:intron |
| GTTGATGCTTTCCCTGAAAC+TGG | 0.375894 | 1_4:+63188672 | Msa0176660:CDS |
| GAGCATATGCCTACTGGAAC+TGG | 0.381520 | 1_4:+63189162 | Msa0176660:three_prime_UTR |
| TCTTCTATCAACTCATATAG+TGG | 0.394763 | 1_4:-63188886 | None:intergenic |
| TGGAACATGAAGGAGGCATT+CGG | 0.409372 | 1_4:-63186333 | None:intergenic |
| AGAAGCAAAATGATGTCATT+TGG | 0.413883 | 1_4:+63186268 | Msa0176660:exon |
| TAGTGGTTTGTTAGCACTGT+TGG | 0.421898 | 1_4:-63188869 | None:intergenic |
| GAATCTTCAACTAACTCATT+GGG | 0.427110 | 1_4:-63186727 | None:intergenic |
| CAGAGGATGCTCTTGGAGTC+CGG | 0.431893 | 1_4:-63186423 | None:intergenic |
| CTTACAGGTGGACCGTATCT+AGG | 0.436030 | 1_4:-63186778 | None:intergenic |
| ACTCTAATAATAACCTCAAC+CGG | 0.438701 | 1_4:+63186404 | Msa0176660:CDS |
| TTGAAAATGGAACAAGAAGA+AGG | 0.451288 | 1_4:-63186382 | None:intergenic |
| GGAACATGAAGGAGGCATTC+GGG | 0.451596 | 1_4:-63186332 | None:intergenic |
| AACTGGAAAGTGTGGAAGAT+TGG | 0.452214 | 1_4:+63189179 | Msa0176660:three_prime_UTR |
| ATGCTCTTGGAGTCCGGTTG+AGG | 0.462973 | 1_4:-63186417 | None:intergenic |
| ATTTATGAGCATATGCCTAC+TGG | 0.466485 | 1_4:+63189156 | Msa0176660:three_prime_UTR |
| AGTGGTTTGTTAGCACTGTT+GGG | 0.472960 | 1_4:-63188868 | None:intergenic |
| AGTGAGCTCTTAGAATTCAC+TGG | 0.479356 | 1_4:-63189042 | None:intergenic |
| AAACCTTCAGAGGATGCTCT+TGG | 0.490604 | 1_4:-63186430 | None:intergenic |
| CCAGATAAGAAACATATTCG+TGG | 0.493847 | 1_4:-63188621 | None:intergenic |
| CATTGAAACATGGGAAAACA+TGG | 0.494004 | 1_4:-63186353 | None:intergenic |
| ACTAAAACCAGCCGCGTTTG+CGG | 0.496458 | 1_4:+63188837 | Msa0176660:CDS |
| ACATGCTTACTCGTTCACTC+TGG | 0.498624 | 1_4:+63188076 | Msa0176660:CDS |
| ACAAGAGCCGCAAACGCGGC+TGG | 0.501981 | 1_4:-63188844 | None:intergenic |
| ATTTGTTCCTATAAATGTTG+AGG | 0.506384 | 1_4:+63186753 | Msa0176660:CDS |
| GAATCTCTACGAACTGCAGC+TGG | 0.510882 | 1_4:+63186296 | Msa0176660:CDS |
| CACGGGAGATCATGAGATGT+TGG | 0.526608 | 1_4:+63188912 | Msa0176660:CDS |
| AGAGAGTTTAGAAGAGGTCA+AGG | 0.549225 | 1_4:+63188119 | Msa0176660:CDS |
| TGAACGAGTAAGCATGTCCT+TGG | 0.551105 | 1_4:-63188070 | None:intergenic |
| CATGCTTACTCGTTCACTCT+GGG | 0.559754 | 1_4:+63188077 | Msa0176660:CDS |
| GAAATAAGACAAACCTTCAG+AGG | 0.564816 | 1_4:-63186440 | None:intergenic |
| ACTCCAAGAGCATCCTCTGA+AGG | 0.573743 | 1_4:+63186427 | Msa0176660:CDS |
| AAAATGATGTCATTTGGCGT+TGG | 0.575227 | 1_4:+63186274 | Msa0176660:exon |
| AGGAGAAGACATTGAAACAT+GGG | 0.575410 | 1_4:-63186362 | None:intergenic |
| CCACACTTTCCAGTTCCAGT+AGG | 0.575830 | 1_4:-63189171 | None:intergenic |
| AATGTTGAGGATCCTAGATA+CGG | 0.582883 | 1_4:+63186766 | Msa0176660:CDS |
| TGTTTCTTATCTGGTTTAAG+CGG | 0.583734 | 1_4:+63188630 | Msa0176660:CDS |
| TGAGTTGATAGAAGAAATCA+CGG | 0.591951 | 1_4:+63188894 | Msa0176660:CDS |
| TCATGAGTAGAAGAAGCAAA+CGG | 0.592569 | 1_4:+63186214 | Msa0176660:five_prime_UTR |
| CTTATCTGGTTTAAGCGGAG+AGG | 0.593073 | 1_4:+63188635 | Msa0176660:CDS |
| AAGGAGAAGACATTGAAACA+TGG | 0.593929 | 1_4:-63186363 | None:intergenic |
| AACACAAGAGAGTTTAGAAG+AGG | 0.600712 | 1_4:+63188113 | Msa0176660:CDS |
| GGAGATCATGAGATGTTGGT+AGG | 0.606238 | 1_4:+63188916 | Msa0176660:CDS |
| CCTACTGGAACTGGAAAGTG+TGG | 0.625255 | 1_4:+63189171 | Msa0176660:three_prime_UTR |
| GGGAACAAGAGCCGCAAACG+CGG | 0.631180 | 1_4:-63188848 | None:intergenic |
| GTGAGCTCTTAGAATTCACT+GGG | 0.631634 | 1_4:-63189041 | None:intergenic |
| GTTAGAGGGTGAATTCCTGA+AGG | 0.640466 | 1_4:+63187632 | Msa0176660:CDS |
| TGGGAAAACATGGAACATGA+AGG | 0.642942 | 1_4:-63186343 | None:intergenic |
| GAAAACATGGAACATGAAGG+AGG | 0.688873 | 1_4:-63186340 | None:intergenic |
| GTAGGTCATCTATTGTACCA+AGG | 0.708999 | 1_4:+63188053 | Msa0176660:intron |
| GAGTTGATAGAAGAAATCAC+GGG | 0.709286 | 1_4:+63188895 | Msa0176660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTAAATGATTTGATTA+AGG | - | chr1_4:63187201-63187220 | None:intergenic | 15.0% |
| !!! | TCTTGAAATTTTTTATACTA+AGG | + | chr1_4:63187377-63187396 | Msa0176660:intron | 15.0% |
| !! | GCTTATAGTAAATTATAAAA+TGG | + | chr1_4:63187465-63187484 | Msa0176660:intron | 15.0% |
| !! | GTAAATTATAAAATGGATAT+AGG | + | chr1_4:63187472-63187491 | Msa0176660:intron | 15.0% |
| !!! | ATTAGGATACATTAAAATTT+TGG | - | chr1_4:63187975-63187994 | None:intergenic | 15.0% |
| !! | AATGATGAATTCTTAATAAA+CGG | - | chr1_4:63188301-63188320 | None:intergenic | 15.0% |
| !! | CGGATAAAATAAAAGAATTT+AGG | + | chr1_4:63186234-63186253 | Msa0176660:five_prime_UTR | 20.0% |
| !! | GTTATTATTAGAGTTGAAAA+TGG | - | chr1_4:63186398-63186417 | None:intergenic | 20.0% |
| !!! | ATTTGAAATGTGATGTTTAT+CGG | + | chr1_4:63186820-63186839 | Msa0176660:intron | 20.0% |
| !! | AATTTCAATCAATCTAACTT+AGG | + | chr1_4:63186965-63186984 | Msa0176660:intron | 20.0% |
| !! | AAAGATGTAAAATAATACAG+TGG | - | chr1_4:63187550-63187569 | None:intergenic | 20.0% |
| !! | ATAATTAAACTCATTGATCT+TGG | - | chr1_4:63187707-63187726 | None:intergenic | 20.0% |
| !!! | AAAATTTTGGTCACATATTA+GGG | - | chr1_4:63187962-63187981 | None:intergenic | 20.0% |
| !!! | TAAAATTTTGGTCACATATT+AGG | - | chr1_4:63187963-63187982 | None:intergenic | 20.0% |
| !! | TTTCGATGTATAAGAAAATT+AGG | - | chr1_4:63187992-63188011 | None:intergenic | 20.0% |
| !!! | GTTTTCTGATTTCAAATTTA+TGG | + | chr1_4:63188368-63188387 | Msa0176660:intron | 20.0% |
| !!! | ATTGATTTTATCGATAAGTT+TGG | + | chr1_4:63188731-63188750 | Msa0176660:intron | 20.0% |
| !!! | ATTTGAAATTTGTTTTATGC+AGG | + | chr1_4:63188814-63188833 | Msa0176660:intron | 20.0% |
| ! | TTAAACTATTTATCCAGACA+TGG | + | chr1_4:63186594-63186613 | Msa0176660:intron | 25.0% |
| !!! | TTTTTTTTTGCTTATCATGC+AGG | + | chr1_4:63186700-63186719 | Msa0176660:intron | 25.0% |
| ! | ATTTGTTCCTATAAATGTTG+AGG | + | chr1_4:63186753-63186772 | Msa0176660:CDS | 25.0% |
| ! | ATCTTTATAAAGAAATGCTG+TGG | + | chr1_4:63187139-63187158 | Msa0176660:intron | 25.0% |
| ! | AAATCATTTAGAAATGCCTT+CGG | + | chr1_4:63187206-63187225 | Msa0176660:intron | 25.0% |
| ! | AGATAAAATACGAACATGAT+AGG | - | chr1_4:63187679-63187698 | None:intergenic | 25.0% |
| ! | AATGTAACATATTGCATTGT+AGG | + | chr1_4:63188035-63188054 | Msa0176660:intron | 25.0% |
| ! | ATTTGCATGAATTGTTAAGT+AGG | + | chr1_4:63188322-63188341 | Msa0176660:intron | 25.0% |
| ! | GGTCATGATTAATTGATTAT+AGG | + | chr1_4:63188346-63188365 | Msa0176660:intron | 25.0% |
| AGAAGCAAAATGATGTCATT+TGG | + | chr1_4:63186268-63186287 | Msa0176660:exon | 30.0% | |
| TTGAAAATGGAACAAGAAGA+AGG | - | chr1_4:63186385-63186404 | None:intergenic | 30.0% | |
| ACTCTAATAATAACCTCAAC+CGG | + | chr1_4:63186404-63186423 | Msa0176660:CDS | 30.0% | |
| ! | TTTAGCTTATTTCCATGAGT+TGG | + | chr1_4:63186498-63186517 | Msa0176660:intron | 30.0% |
| GAATCTTCAACTAACTCATT+GGG | - | chr1_4:63186730-63186749 | None:intergenic | 30.0% | |
| TGAATCTTCAACTAACTCAT+TGG | - | chr1_4:63186731-63186750 | None:intergenic | 30.0% | |
| GGTAAAATGCATATAAAGTG+AGG | - | chr1_4:63186909-63186928 | None:intergenic | 30.0% | |
| AACTCAAATTAGACTCTCAA+AGG | - | chr1_4:63186930-63186949 | None:intergenic | 30.0% | |
| TTCAAATCCCAACAACAATA+AGG | - | chr1_4:63187062-63187081 | None:intergenic | 30.0% | |
| ! | TGAAGCAGATGAACATTTTA+AGG | + | chr1_4:63187078-63187097 | Msa0176660:CDS | 30.0% |
| GATTATCATATCCTATTGCA+TGG | - | chr1_4:63187122-63187141 | None:intergenic | 30.0% | |
| ACAATAATCAGAGCAATGAT+TGG | - | chr1_4:63187314-63187333 | None:intergenic | 30.0% | |
| ! | GTTGCTCTATCAATCATTTT+GGG | - | chr1_4:63187354-63187373 | None:intergenic | 30.0% |
| ! | AGTTGCTCTATCAATCATTT+TGG | - | chr1_4:63187355-63187374 | None:intergenic | 30.0% |
| ATGTTACAATTACAGCATGA+AGG | + | chr1_4:63187417-63187436 | Msa0176660:intron | 30.0% | |
| !! | ACAGTTTTTGAAAGAGTTAG+AGG | + | chr1_4:63187617-63187636 | Msa0176660:CDS | 30.0% |
| !! | CAGTTTTTGAAAGAGTTAGA+GGG | + | chr1_4:63187618-63187637 | Msa0176660:CDS | 30.0% |
| ! | ATAAGATGTTTGTTACCTTC+AGG | - | chr1_4:63187650-63187669 | None:intergenic | 30.0% |
| CATTTGTTTATTCAGACTGT+TGG | - | chr1_4:63187743-63187762 | None:intergenic | 30.0% | |
| ACAATCTTTGGCTATTAAAG+TGG | - | chr1_4:63187771-63187790 | None:intergenic | 30.0% | |
| AATAAGTAGTTGTTGTGCAT+TGG | - | chr1_4:63187795-63187814 | None:intergenic | 30.0% | |
| TTGTCTGTATTGCATTATCT+AGG | - | chr1_4:63187841-63187860 | None:intergenic | 30.0% | |
| GATGAAAATAGTACATCACT+CGG | - | chr1_4:63188161-63188180 | None:intergenic | 30.0% | |
| ACTACAAATTCATGAACAGA+TGG | - | chr1_4:63188201-63188220 | None:intergenic | 30.0% | |
| ATGGAGAATTATCATTTGTC+TGG | + | chr1_4:63188387-63188406 | Msa0176660:intron | 30.0% | |
| CATTGCTACAAAGTTCTTAT+TGG | - | chr1_4:63188444-63188463 | None:intergenic | 30.0% | |
| CATATGTTACTAATGTTCCA+AGG | + | chr1_4:63188485-63188504 | Msa0176660:intron | 30.0% | |
| ! | TGTTTCTTATCTGGTTTAAG+CGG | + | chr1_4:63188630-63188649 | Msa0176660:CDS | 30.0% |
| TCTTCTATCAACTCATATAG+TGG | - | chr1_4:63188889-63188908 | None:intergenic | 30.0% | |
| !! | TGAGTTGATAGAAGAAATCA+CGG | + | chr1_4:63188894-63188913 | Msa0176660:CDS | 30.0% |
| TCATGAGTAGAAGAAGCAAA+CGG | + | chr1_4:63186214-63186233 | Msa0176660:five_prime_UTR | 35.0% | |
| ! | AAAATGATGTCATTTGGCGT+TGG | + | chr1_4:63186274-63186293 | Msa0176660:exon | 35.0% |
| CATTGAAACATGGGAAAACA+TGG | - | chr1_4:63186356-63186375 | None:intergenic | 35.0% | |
| AGGAGAAGACATTGAAACAT+GGG | - | chr1_4:63186365-63186384 | None:intergenic | 35.0% | |
| AAGGAGAAGACATTGAAACA+TGG | - | chr1_4:63186366-63186385 | None:intergenic | 35.0% | |
| GAAATAAGACAAACCTTCAG+AGG | - | chr1_4:63186443-63186462 | None:intergenic | 35.0% | |
| TTCATAAGTGATCCAACTCA+TGG | - | chr1_4:63186513-63186532 | None:intergenic | 35.0% | |
| ACTATTTATCCAGACATGGA+TGG | + | chr1_4:63186598-63186617 | Msa0176660:intron | 35.0% | |
| TACTCTCATTCCTTGAAAGT+TGG | + | chr1_4:63186639-63186658 | Msa0176660:intron | 35.0% | |
| AATTTGAGCACCAACTTTCA+AGG | - | chr1_4:63186652-63186671 | None:intergenic | 35.0% | |
| CTAGGATCCTCAACATTTAT+AGG | - | chr1_4:63186763-63186782 | None:intergenic | 35.0% | |
| AATGTTGAGGATCCTAGATA+CGG | + | chr1_4:63186766-63186785 | Msa0176660:CDS | 35.0% | |
| GAAAACTAACCATGACTTAC+AGG | - | chr1_4:63186796-63186815 | None:intergenic | 35.0% | |
| ACTTCTGCAGAAATCTCATA+TGG | + | chr1_4:63186871-63186890 | Msa0176660:intron | 35.0% | |
| CTTAGGACCAAAACTTAGTA+TGG | + | chr1_4:63186982-63187001 | Msa0176660:intron | 35.0% | |
| ! | TCGACAACCATACTAAGTTT+TGG | - | chr1_4:63186992-63187011 | None:intergenic | 35.0% |
| !!! | AGGGGTTTCTTTTATTTTGC+AGG | + | chr1_4:63187036-63187055 | Msa0176660:intron | 35.0% |
| ATTACCATCATCCATGCAAT+AGG | + | chr1_4:63187108-63187127 | Msa0176660:intron | 35.0% | |
| ATATCCTATTGCATGGATGA+TGG | - | chr1_4:63187115-63187134 | None:intergenic | 35.0% | |
| GGACACACACTTAATATTAC+GGG | - | chr1_4:63187263-63187282 | None:intergenic | 35.0% | |
| CGGACACACACTTAATATTA+CGG | - | chr1_4:63187264-63187283 | None:intergenic | 35.0% | |
| TTCATGTATGTTGAGCAGAA+CGG | - | chr1_4:63187284-63187303 | None:intergenic | 35.0% | |
| CTACGATTGAATGACACATT+TGG | - | chr1_4:63187573-63187592 | None:intergenic | 35.0% | |
| TTGTGCATTGGAACAATCTT+TGG | - | chr1_4:63187783-63187802 | None:intergenic | 35.0% | |
| TAGTCACCACAAATAGACAA+AGG | + | chr1_4:63187931-63187950 | Msa0176660:intron | 35.0% | |
| GAAAAGCCTTTGTCTATTTG+TGG | - | chr1_4:63187940-63187959 | None:intergenic | 35.0% | |
| AACACAAGAGAGTTTAGAAG+AGG | + | chr1_4:63188113-63188132 | Msa0176660:CDS | 35.0% | |
| AATTCATGAACAGATGGAGA+GGG | - | chr1_4:63188195-63188214 | None:intergenic | 35.0% | |
| AAATTCATGAACAGATGGAG+AGG | - | chr1_4:63188196-63188215 | None:intergenic | 35.0% | |
| TGCATGAATTGTTAAGTAGG+TGG | + | chr1_4:63188325-63188344 | Msa0176660:intron | 35.0% | |
| CCAGATAAGAAACATATTCG+TGG | - | chr1_4:63188624-63188643 | None:intergenic | 35.0% | |
| CCACGAATATGTTTCTTATC+TGG | + | chr1_4:63188621-63188640 | Msa0176660:CDS | 35.0% | |
| !!! | GATTTTGGTTACCAGTTTCA+GGG | - | chr1_4:63188686-63188705 | None:intergenic | 35.0% |
| !!! | AGATTTTGGTTACCAGTTTC+AGG | - | chr1_4:63188687-63188706 | None:intergenic | 35.0% |
| TGCATGAATGATAGATCTAC+TGG | + | chr1_4:63188765-63188784 | Msa0176660:intron | 35.0% | |
| !! | GAGTTGATAGAAGAAATCAC+GGG | + | chr1_4:63188895-63188914 | Msa0176660:CDS | 35.0% |
| ATTTATGAGCATATGCCTAC+TGG | + | chr1_4:63189156-63189175 | Msa0176660:three_prime_UTR | 35.0% | |
| GAAAACATGGAACATGAAGG+AGG | - | chr1_4:63186343-63186362 | None:intergenic | 40.0% | |
| TGGGAAAACATGGAACATGA+AGG | - | chr1_4:63186346-63186365 | None:intergenic | 40.0% | |
| AACTAACCATGACTTACAGG+TGG | - | chr1_4:63186793-63186812 | None:intergenic | 40.0% | |
| TCTGCAGAAATCTCATATGG+CGG | + | chr1_4:63186874-63186893 | Msa0176660:intron | 40.0% | |
| ATTCATATGTAGCTAAGCGC+AGG | + | chr1_4:63187016-63187035 | Msa0176660:intron | 40.0% | |
| TTCATATGTAGCTAAGCGCA+GGG | + | chr1_4:63187017-63187036 | Msa0176660:intron | 40.0% | |
| !! | TTTGCAGGCCTTATTGTTGT+TGG | + | chr1_4:63187051-63187070 | Msa0176660:intron | 40.0% |
| !! | TTGCAGGCCTTATTGTTGTT+GGG | + | chr1_4:63187052-63187071 | Msa0176660:intron | 40.0% |
| CAAAAGAGAGATCGAGGAAA+AGG | - | chr1_4:63187237-63187256 | None:intergenic | 40.0% | |
| GTAGGTCATCTATTGTACCA+AGG | + | chr1_4:63188053-63188072 | Msa0176660:intron | 40.0% | |
| AGAGAGTTTAGAAGAGGTCA+AGG | + | chr1_4:63188119-63188138 | Msa0176660:CDS | 40.0% | |
| ACGGCTGTCAAAAATCACAA+GGG | - | chr1_4:63188282-63188301 | None:intergenic | 40.0% | |
| AACGGCTGTCAAAAATCACA+AGG | - | chr1_4:63188283-63188302 | None:intergenic | 40.0% | |
| ! | ATGTTCCAAGGCCTTTTTAG+TGG | + | chr1_4:63188497-63188516 | Msa0176660:intron | 40.0% |
| !! | TGTTCCAAGGCCTTTTTAGT+GGG | + | chr1_4:63188498-63188517 | Msa0176660:intron | 40.0% |
| ACTTGTCTATCTGCAATGCA+AGG | - | chr1_4:63188596-63188615 | None:intergenic | 40.0% | |
| !! | CTTCAGCACTGAACAGATTT+TGG | - | chr1_4:63188701-63188720 | None:intergenic | 40.0% |
| !! | AGTGGTTTGTTAGCACTGTT+GGG | - | chr1_4:63188871-63188890 | None:intergenic | 40.0% |
| !! | TAGTGGTTTGTTAGCACTGT+TGG | - | chr1_4:63188872-63188891 | None:intergenic | 40.0% |
| GTGAGCTCTTAGAATTCACT+GGG | - | chr1_4:63189044-63189063 | None:intergenic | 40.0% | |
| AGTGAGCTCTTAGAATTCAC+TGG | - | chr1_4:63189045-63189064 | None:intergenic | 40.0% | |
| ! | AACTGGAAAGTGTGGAAGAT+TGG | + | chr1_4:63189179-63189198 | Msa0176660:three_prime_UTR | 40.0% |
| !! | TGGAACATGAAGGAGGCATT+CGG | - | chr1_4:63186336-63186355 | None:intergenic | 45.0% |
| AAACCTTCAGAGGATGCTCT+TGG | - | chr1_4:63186433-63186452 | None:intergenic | 45.0% | |
| TCATATGTAGCTAAGCGCAG+GGG | + | chr1_4:63187018-63187037 | Msa0176660:intron | 45.0% | |
| GGGATACAAAAGAGAGATCG+AGG | - | chr1_4:63187243-63187262 | None:intergenic | 45.0% | |
| GTTAGAGGGTGAATTCCTGA+AGG | + | chr1_4:63187632-63187651 | Msa0176660:CDS | 45.0% | |
| TGAACGAGTAAGCATGTCCT+TGG | - | chr1_4:63188073-63188092 | None:intergenic | 45.0% | |
| ACATGCTTACTCGTTCACTC+TGG | + | chr1_4:63188076-63188095 | Msa0176660:CDS | 45.0% | |
| CATGCTTACTCGTTCACTCT+GGG | + | chr1_4:63188077-63188096 | Msa0176660:CDS | 45.0% | |
| AGCATTGCGACCCACTAAAA+AGG | - | chr1_4:63188511-63188530 | None:intergenic | 45.0% | |
| ! | CTTATCTGGTTTAAGCGGAG+AGG | + | chr1_4:63188635-63188654 | Msa0176660:CDS | 45.0% |
| GTTGATGCTTTCCCTGAAAC+TGG | + | chr1_4:63188672-63188691 | Msa0176660:CDS | 45.0% | |
| GGAGATCATGAGATGTTGGT+AGG | + | chr1_4:63188916-63188935 | Msa0176660:CDS | 45.0% | |
| ! | ATCTTTTATCGCGTGCAGAC+TGG | + | chr1_4:63188998-63189017 | Msa0176660:intron | 45.0% |
| GAATCTCTACGAACTGCAGC+TGG | + | chr1_4:63186296-63186315 | Msa0176660:CDS | 50.0% | |
| !! | GGAACATGAAGGAGGCATTC+GGG | - | chr1_4:63186335-63186354 | None:intergenic | 50.0% |
| !! | ACTCCAAGAGCATCCTCTGA+AGG | + | chr1_4:63186427-63186446 | Msa0176660:CDS | 50.0% |
| GCAACAAGACCATCCATGTC+TGG | - | chr1_4:63186610-63186629 | None:intergenic | 50.0% | |
| CTTACAGGTGGACCGTATCT+AGG | - | chr1_4:63186781-63186800 | None:intergenic | 50.0% | |
| TACGGTCCACCTGTAAGTCA+TGG | + | chr1_4:63186784-63186803 | Msa0176660:intron | 50.0% | |
| ACTAAAACCAGCCGCGTTTG+CGG | + | chr1_4:63188837-63188856 | Msa0176660:CDS | 50.0% | |
| CACGGGAGATCATGAGATGT+TGG | + | chr1_4:63188912-63188931 | Msa0176660:CDS | 50.0% | |
| GAGCATATGCCTACTGGAAC+TGG | + | chr1_4:63189162-63189181 | Msa0176660:three_prime_UTR | 50.0% | |
| CCACACTTTCCAGTTCCAGT+AGG | - | chr1_4:63189174-63189193 | None:intergenic | 50.0% | |
| CCTACTGGAACTGGAAAGTG+TGG | + | chr1_4:63189171-63189190 | Msa0176660:three_prime_UTR | 50.0% | |
| ATGCTCTTGGAGTCCGGTTG+AGG | - | chr1_4:63186420-63186439 | None:intergenic | 55.0% | |
| CAGAGGATGCTCTTGGAGTC+CGG | - | chr1_4:63186426-63186445 | None:intergenic | 55.0% | |
| GCGACCCACTAAAAAGGCCT+TGG | - | chr1_4:63188505-63188524 | None:intergenic | 55.0% | |
| ! | CGAGGAAAAGGCACAGCCGA+AGG | - | chr1_4:63187225-63187244 | None:intergenic | 60.0% |
| GGGAACAAGAGCCGCAAACG+CGG | - | chr1_4:63188851-63188870 | None:intergenic | 60.0% | |
| ACAAGAGCCGCAAACGCGGC+TGG | - | chr1_4:63188847-63188866 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 63186164 | 63189297 | 63186164 | ID=Msa0176660;Name=Msa0176660 |
| chr1_4 | mRNA | 63186164 | 63189297 | 63186164 | ID=Msa0176660-mRNA-1;Parent=Msa0176660;Name=Msa0176660-mRNA-1;_AED=0.23;_eAED=0.23;_QI=113|0.85|0.87|1|1|1|8|196|229 |
| chr1_4 | exon | 63186164 | 63186448 | 63186164 | ID=Msa0176660-mRNA-1:exon:20358;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63186722 | 63186795 | 63186722 | ID=Msa0176660-mRNA-1:exon:20359;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63187058 | 63187099 | 63187058 | ID=Msa0176660-mRNA-1:exon:20360;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63187612 | 63187653 | 63187612 | ID=Msa0176660-mRNA-1:exon:20361;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63188057 | 63188140 | 63188057 | ID=Msa0176660-mRNA-1:exon:20362;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63188606 | 63188693 | 63188606 | ID=Msa0176660-mRNA-1:exon:20363;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63188836 | 63188937 | 63188836 | ID=Msa0176660-mRNA-1:exon:20364;Parent=Msa0176660-mRNA-1 |
| chr1_4 | exon | 63189016 | 63189297 | 63189016 | ID=Msa0176660-mRNA-1:exon:20365;Parent=Msa0176660-mRNA-1 |
| chr1_4 | five_prime_UTR | 63186164 | 63186276 | 63186164 | ID=Msa0176660-mRNA-1:five_prime_utr;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63186277 | 63186448 | 63186277 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63186722 | 63186795 | 63186722 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63187058 | 63187099 | 63187058 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63187612 | 63187653 | 63187612 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63188057 | 63188140 | 63188057 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63188606 | 63188693 | 63188606 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63188836 | 63188937 | 63188836 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | CDS | 63189016 | 63189101 | 63189016 | ID=Msa0176660-mRNA-1:cds;Parent=Msa0176660-mRNA-1 |
| chr1_4 | three_prime_UTR | 63189102 | 63189297 | 63189102 | ID=Msa0176660-mRNA-1:three_prime_utr;Parent=Msa0176660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
