AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046800 MtrunA17_Chr7g0262211 94.705 491 26 0 1 491 16 506 0.0 967
Msa0046800 MtrunA17_Chr7g0262201 95.625 480 21 0 12 491 1 480 0.0 957
Msa0046800 MtrunA17_Chr7g0237461 54.309 499 210 2 9 489 1 499 0.0 574
Msa0046800 MtrunA17_Chr2g0292011 52.132 516 212 2 9 489 1 516 0.0 564
Msa0046800 MtrunA17_Chr8g0347561 55.110 499 192 4 9 488 22 507 0.0 563
Msa0046800 MtrunA17_Chr2g0292021 50.278 539 210 4 9 489 1 539 0.0 554
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046800 AT2G20340.1 73.566 488 129 0 1 488 1 488 0.0 773
Msa0046800 AT2G20340.2 68.443 488 127 1 1 488 1 461 0.0 702
Msa0046800 AT4G28680.1 65.702 484 162 1 8 487 56 539 0.0 685
Msa0046800 AT4G28680.2 65.638 486 161 2 8 487 56 541 0.0 682
Msa0046800 AT4G28680.3 65.432 486 162 2 8 487 56 541 0.0 681
Msa0046800 AT4G28680.4 65.432 486 162 2 8 487 47 532 0.0 681
Msa0046800 AT4G28680.5 61.868 514 162 3 8 487 47 560 0.0 665
Msa0046800 AT4G28680.7 67.742 341 104 2 8 342 47 387 2.35e-172 492
Msa0046800 AT4G28680.6 68.323 322 96 2 8 323 47 368 2.71e-163 467

Find 126 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATGTTGCAATGATTC+AGG 0.229186 1_1:+79203629 None:intergenic
TGCCATTATCTTCAGAGTTT+GGG 0.253457 1_1:+79199204 None:intergenic
TTGCCATTATCTTCAGAGTT+TGG 0.256082 1_1:+79199203 None:intergenic
TTAACATGAATGCACATAAA+TGG 0.263676 1_1:-79200487 Msa0046800:CDS
GGAAAATATGCAAAATAGTT+AGG 0.272556 1_1:+79202575 None:intergenic
CTGTTCAGTGCTTTGGGTTA+AGG 0.293432 1_1:-79200447 Msa0046800:intron
ACTTCGACTGTTCAGTGCTT+TGG 0.295923 1_1:-79200454 Msa0046800:CDS
TTCCTCTTGGGCGTCGGTTT+AGG 0.296718 1_1:-79199917 Msa0046800:intron
GTGTTGTGACTTACATATTT+TGG 0.298480 1_1:+79204038 None:intergenic
CTTCGACTGTTCAGTGCTTT+GGG 0.316341 1_1:-79200453 Msa0046800:CDS
CCCAGTTCTTAGCCAAGTTC+AGG 0.324917 1_1:-79203770 Msa0046800:intron
TGCTCTATTAGAGAGTTTAT+AGG 0.332521 1_1:-79198930 Msa0046800:exon
TGCCTATATAATCGATTAAT+AGG 0.333545 1_1:+79198693 None:intergenic
CGCAAAATTTGTGGAAGAAT+CGG 0.340460 1_1:+79201743 None:intergenic
ATTACATGACTCGTTCGTTT+TGG 0.349683 1_1:-79198817 Msa0046800:three_prime_UTR
CTGTGGTTTATGCGCTATAC+AGG 0.358585 1_1:+79198725 None:intergenic
AAAACCAGCGACGCTACTAT+TGG 0.364577 1_1:+79202550 None:intergenic
ACCTGAACTTGGCTAAGAAC+TGG 0.375623 1_1:+79203769 None:intergenic
ATTGGTAGCCCAACAACATT+TGG 0.376871 1_1:-79200598 Msa0046800:intron
TGGATGGTGATGCGACTCTA+TGG 0.384269 1_1:-79199544 Msa0046800:CDS
TTTGTAAAGCGGAGTGTGTT+TGG 0.393179 1_1:+79202059 None:intergenic
CAGCGTTCATTACGTATTTG+TGG 0.394808 1_1:-79198750 Msa0046800:three_prime_UTR
TGATATATAGTATGTTTGTT+TGG 0.397136 1_1:+79204102 None:intergenic
TCCCCAAACTCTGAAGATAA+TGG 0.401163 1_1:-79199206 Msa0046800:CDS
TACCTATTAATCGATTATAT+AGG 0.401286 1_1:-79198695 Msa0046800:three_prime_UTR
CTCAGTTGCTCAGCGTCCAT+TGG 0.409096 1_1:+79203853 None:intergenic
GACAAGATCCTGCGAGCGGC+TGG 0.416291 1_1:-79202121 Msa0046800:CDS
GACTAAATCCAGAGCTCTGC+AGG 0.423363 1_1:-79201776 Msa0046800:CDS
CCGTTGCAGCCAGGTTATCT+TGG 0.425862 1_1:-79203683 Msa0046800:intron
CTTTCTTGTCATAGATGTAC+AGG 0.430111 1_1:-79202633 Msa0046800:intron
GAATCTCACAATAATCGAAT+AGG 0.433187 1_1:-79198626 Msa0046800:three_prime_UTR
GGCAAATTCCTCTTGGGCGT+CGG 0.434226 1_1:-79199923 Msa0046800:CDS
TTAAGCAACCTGCAGAGCTC+TGG 0.434822 1_1:+79201768 None:intergenic
ATGCGACTCTATGGATTAGA+AGG 0.437596 1_1:-79199535 Msa0046800:CDS
CTCGACTCAGTAAATTCAAC+GGG 0.440670 1_1:-79199161 Msa0046800:CDS
ATTGCTTCAGAAAGTACATC+AGG 0.443381 1_1:+79201714 None:intergenic
AGTGCTGGTCTCAACATTGT+GGG 0.444926 1_1:-79202512 Msa0046800:CDS
GATGCATATGTCACAAGCTT+AGG 0.446079 1_1:+79202085 None:intergenic
AGGGGAAAGCGCAAAATTTG+TGG 0.448072 1_1:+79201734 None:intergenic
AAAGACTGGCAAATTCCTCT+TGG 0.449802 1_1:-79199930 Msa0046800:CDS
GAGTACCGCCACTTCATTGA+TGG 0.450617 1_1:-79200530 Msa0046800:CDS
TCAATGAAGTGGCGGTACTC+TGG 0.451337 1_1:+79200533 None:intergenic
CACATGAAACCAAATGTTGT+TGG 0.451855 1_1:+79200589 None:intergenic
TGTTCAAGACACTAGATTCA+AGG 0.454069 1_1:-79199455 Msa0046800:intron
CAGAGTTTGGGGAAGGCAAA+AGG 0.465442 1_1:+79199216 None:intergenic
CCATCCAATAGTAGCGTCGC+TGG 0.471256 1_1:-79202554 Msa0046800:CDS
GAAAATATGCAAAATAGTTA+GGG 0.471513 1_1:+79202576 None:intergenic
GGATGAGTAGGAGCAGAATC+TGG 0.480705 1_1:+79203650 None:intergenic
CATGTGGATGCTGCGTATGC+TGG 0.482163 1_1:-79200572 Msa0046800:CDS
GTGATTATATTGCAGGGCAA+GGG 0.488618 1_1:-79202204 Msa0046800:intron
TTAGGAGAGATGCTTAGTGC+TGG 0.489284 1_1:-79202527 Msa0046800:CDS
CGTTCCGTCCAGCCGCTCGC+AGG 0.494855 1_1:+79202113 None:intergenic
CTGAACAGTCGAAGTTAGTA+AGG 0.502263 1_1:+79200462 None:intergenic
CAACAACATTTGGTTTCATG+TGG 0.503005 1_1:-79200588 Msa0046800:CDS
ACATGAAACCAAATGTTGTT+GGG 0.506017 1_1:+79200590 None:intergenic
CGCTCGCAGGATCTTGTCAC+GGG 0.515747 1_1:+79202126 None:intergenic
AAGACTGGCAAATTCCTCTT+GGG 0.517080 1_1:-79199929 Msa0046800:CDS
AAAACGAACGAGTCATGTAA+TGG 0.524452 1_1:+79198819 None:intergenic
ATAGAAAGAGAACCTGAACT+TGG 0.527971 1_1:+79203758 None:intergenic
CGGTCATAGATTACAAAGAC+TGG 0.532308 1_1:-79199944 Msa0046800:CDS
AGCTGTGGTAGTAGTGTTGG+TGG 0.533217 1_1:-79202152 Msa0046800:CDS
GTATATACATACAGGGAAGA+AGG 0.534438 1_1:-79203895 Msa0046800:intron
TCAACATTGTGGGATTCAGC+TGG 0.534978 1_1:-79202502 Msa0046800:CDS
TAGTGCTGGTCTCAACATTG+TGG 0.535988 1_1:-79202513 Msa0046800:CDS
TGCATTGGCAAAAGTCACTA+AGG 0.536020 1_1:-79201045 Msa0046800:intron
AGTACCGCCACTTCATTGAT+GGG 0.540078 1_1:-79200529 Msa0046800:CDS
TGTTGATCCTCTACCTGCAT+TGG 0.540969 1_1:-79201060 Msa0046800:CDS
TCGAAACAATTGTCCTCGAC+TGG 0.543941 1_1:-79202454 Msa0046800:CDS
TTACTGAGTCGAGTAGATCA+TGG 0.545598 1_1:+79199171 None:intergenic
GCAATGCTGAAATCAATGTC+AGG 0.545996 1_1:+79198591 None:intergenic
GCTCCAGATCACTAAAACTG+TGG 0.551140 1_1:-79199564 Msa0046800:intron
GCTATTGGCGGTAATTAAAG+TGG 0.552084 1_1:-79204176 None:intergenic
GTTTCGAGTTCAGTTGCAGC+GGG 0.553012 1_1:+79202470 None:intergenic
CAAACTAAAGAGAATGTTCG+AGG 0.559012 1_1:+79199245 None:intergenic
AGAAGCTTTCCAAGATAACC+TGG 0.559883 1_1:+79203674 None:intergenic
TGATTATATTGCAGGGCAAG+GGG 0.560104 1_1:-79202203 Msa0046800:intron
CCTGAACTTGGCTAAGAACT+GGG 0.561432 1_1:+79203770 None:intergenic
TACTACCTGGGGTGACACAT+TGG 0.570201 1_1:-79202604 Msa0046800:CDS
GCCATTATCTTCAGAGTTTG+GGG 0.572330 1_1:+79199205 None:intergenic
TTAATAGGTAACAAATTCTG+TGG 0.573247 1_1:+79198708 None:intergenic
CTTTGCCAATGTGTCACCCC+AGG 0.576950 1_1:+79202599 None:intergenic
TTATCTTCAGAGTTTGGGGA+AGG 0.577908 1_1:+79199209 None:intergenic
GTACAGGAAAAGATACTACC+TGG 0.578178 1_1:-79202617 Msa0046800:CDS
GTGCCTTGGCAAGCCAGTCG+AGG 0.578549 1_1:+79202441 None:intergenic
CAGATCACTAAAACTGTGGA+TGG 0.579287 1_1:-79199560 Msa0046800:CDS
AAAAGAAATCATGAGGCAGA+AGG 0.579439 1_1:+79202417 None:intergenic
ACATGCCTCACTTCTGTCAA+CGG 0.579703 1_1:+79198989 None:intergenic
ATGAGGCAGAAGGAGTGCCT+TGG 0.580320 1_1:+79202427 None:intergenic
AGATCCTGCGAGCGGCTGGA+CGG 0.585019 1_1:-79202117 Msa0046800:CDS
TGAAGCTGTGGTAGTAGTGT+TGG 0.586475 1_1:-79202155 Msa0046800:CDS
CCAGCGACGCTACTATTGGA+TGG 0.586556 1_1:+79202554 None:intergenic
GAGAGAGCAAGGTCATAAGA+TGG 0.589776 1_1:-79203833 Msa0046800:CDS
CACCTAAACCGACGCCCAAG+AGG 0.590015 1_1:+79199915 None:intergenic
TACATTCTACGTTTCGCAGT+AGG 0.591077 1_1:-79199016 Msa0046800:CDS
TGTCCTCGACTGGCTTGCCA+AGG 0.592342 1_1:-79202444 Msa0046800:CDS
AGGAAGTGAGTTAAAGCCAA+TGG 0.594305 1_1:-79203869 Msa0046800:CDS
GGTTTCTTATGTGAGTTCGC+AGG 0.595345 1_1:+79199512 None:intergenic
CCGCTCGCAGGATCTTGTCA+CGG 0.596565 1_1:+79202125 None:intergenic
CTTCAACCCCATCAATGAAG+TGG 0.601748 1_1:+79200522 None:intergenic
TGTCACTAACCATACCTGGC+AGG 0.604879 1_1:+79202033 None:intergenic
ACTCGACTCAGTAAATTCAA+CGG 0.614897 1_1:-79199162 Msa0046800:CDS
TTGCTTCAGAAAGTACATCA+GGG 0.615964 1_1:+79201715 None:intergenic
TGCAATGATTCAGGATGAGT+AGG 0.619895 1_1:+79203638 None:intergenic
TACAGGAAAAGATACTACCT+GGG 0.621666 1_1:-79202616 Msa0046800:CDS
CCAGTAGAAAAGAAATCATG+AGG 0.622229 1_1:+79202410 None:intergenic
AAGGCAGACAAGTGAAACCA+TGG 0.623709 1_1:+79198862 None:intergenic
GCTGAGCAACTGAGAGAGCA+AGG 0.628144 1_1:-79203844 Msa0046800:CDS
ACATACAGGGAAGAAGGAGA+AGG 0.631744 1_1:-79203889 Msa0046800:intron
GGGAACAGCAAGTGAAGCTG+TGG 0.634793 1_1:-79202167 Msa0046800:CDS
GTACCGCCACTTCATTGATG+GGG 0.649089 1_1:-79200528 Msa0046800:CDS
CCAGGCCTCTCAAGAAAACA+CGG 0.650412 1_1:-79199964 Msa0046800:intron
ACGAACGAGTCATGTAATGG+AGG 0.650541 1_1:+79198822 None:intergenic
CATAAGAAACCACATTGCAA+TGG 0.651111 1_1:-79199500 Msa0046800:CDS
TAAACTCTCTAATAGAGCAG+TGG 0.652342 1_1:+79198934 None:intergenic
TGCTTCAGAAAGTACATCAG+GGG 0.653948 1_1:+79201716 None:intergenic
TGTTTCGAGTTCAGTTGCAG+CGG 0.656748 1_1:+79202469 None:intergenic
CAACCCCATCAATGAAGTGG+CGG 0.662184 1_1:+79200525 None:intergenic
ATTTCAAATGACATTGCCAG+TGG 0.662897 1_1:-79201693 Msa0046800:CDS
GTACACACAGAGTGAGTGAG+TGG 0.673924 1_1:-79204145 Msa0046800:five_prime_UTR
GATTATATTGCAGGGCAAGG+GGG 0.680223 1_1:-79202202 Msa0046800:intron
AATAAGCTGCCATTGCAATG+TGG 0.694198 1_1:+79199491 None:intergenic
GAGCACCGTTGACAGAAGTG+AGG 0.695801 1_1:-79198994 Msa0046800:CDS
CCGTGACAAGATCCTGCGAG+CGG 0.708546 1_1:-79202125 Msa0046800:CDS
AATCGAATAGGAGCTTCATG+TGG 0.716759 1_1:-79198614 Msa0046800:three_prime_UTR
TGAGGCATGTCAGTGCAGCG+TGG 0.738253 1_1:-79198976 Msa0046800:CDS
ACAGGAAAAGATACTACCTG+GGG 0.769691 1_1:-79202615 Msa0046800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAGTTATATTTG+TGG - chr1_1:79199423-79199442 Msa0046800:intron 10.0%
!! ATAAATAAAGTTATATTTGT+GGG - chr1_1:79199424-79199443 Msa0046800:intron 10.0%
!! AATTAAAAGAAGAAAAATAT+TGG + chr1_1:79201227-79201246 None:intergenic 10.0%
!!! TTCTTTGATTTTTATTTTTA+TGG - chr1_1:79203031-79203050 Msa0046800:intron 10.0%
!! TAACAAATATTAGATGAAAA+TGG + chr1_1:79199033-79199052 None:intergenic 15.0%
!! TAAATAAAGTTATATTTGTG+GGG - chr1_1:79199425-79199444 Msa0046800:intron 15.0%
!! ATGTGACAATTATTATTAAA+CGG - chr1_1:79199515-79199534 Msa0046800:CDS 15.0%
!!! ATTTTATTTGAGTTTATCTA+TGG - chr1_1:79199819-79199838 Msa0046800:intron 15.0%
!! TGAAATTGGATTATTAAAAT+TGG - chr1_1:79200449-79200468 Msa0046800:CDS 15.0%
!!! ATTTTATCGATTAATCATAA+TGG - chr1_1:79200943-79200962 Msa0046800:intron 15.0%
!! AATTATCATTATTCATTCAT+TGG - chr1_1:79202968-79202987 Msa0046800:intron 15.0%
!! ATTATCATTATTCATTCATT+GGG - chr1_1:79202969-79202988 Msa0046800:intron 15.0%
!!! TTTTTATTAAAAAGTGATAG+CGG + chr1_1:79203111-79203130 None:intergenic 15.0%
!! TGATATATAGTATGTTTGTT+TGG + chr1_1:79198666-79198685 None:intergenic 20.0%
!!! ATATTTTGGTAACGAAAATT+TGG + chr1_1:79198716-79198735 None:intergenic 20.0%
!! ATGAAAATGTATATACATAC+AGG - chr1_1:79198862-79198881 Msa0046800:three_prime_UTR 20.0%
!! TGAAAATGTATATACATACA+GGG - chr1_1:79198863-79198882 Msa0046800:three_prime_UTR 20.0%
!!! TATTTGTCATACTTTGTTTT+TGG - chr1_1:79199223-79199242 Msa0046800:CDS 20.0%
!! ACAATTATTATTAAACGGAA+GGG - chr1_1:79199520-79199539 Msa0046800:CDS 20.0%
!! GAAAATATGCAAAATAGTTA+GGG + chr1_1:79200192-79200211 None:intergenic 20.0%
!! TAATAATCCAATTTCATTCA+CGG + chr1_1:79200445-79200464 None:intergenic 20.0%
!!! AGGCATATGAAATATTTTTT+AGG - chr1_1:79200486-79200505 Msa0046800:CDS 20.0%
!! TAATTTAAACTTGTGATTCA+TGG - chr1_1:79200536-79200555 Msa0046800:CDS 20.0%
!! ATAAAAAACAATGGATCAAT+AGG + chr1_1:79200774-79200793 None:intergenic 20.0%
!! TAAAAAAAGCTGTATATTCA+TGG - chr1_1:79200823-79200842 Msa0046800:intron 20.0%
!! AAAAAAAGCTGTATATTCAT+GGG - chr1_1:79200824-79200843 Msa0046800:intron 20.0%
!! GAAGAAAAATATTGGATATA+AGG + chr1_1:79201219-79201238 None:intergenic 20.0%
!! ACATAATTCTTTCAACTATT+TGG + chr1_1:79201830-79201849 None:intergenic 20.0%
!!! ATATCATTACTTTTTAGACA+TGG - chr1_1:79202014-79202033 Msa0046800:intron 20.0%
!!! AACACTTATCAATTTTATGT+TGG + chr1_1:79202092-79202111 None:intergenic 20.0%
!! TGATATAATCTGATAATACT+CGG - chr1_1:79202131-79202150 Msa0046800:CDS 20.0%
!! TGACATTTAGAAAGATATTA+TGG + chr1_1:79202347-79202366 None:intergenic 20.0%
!! AAAAAACTTCACATTAACAA+TGG + chr1_1:79202554-79202573 None:intergenic 20.0%
!!! TTAATGTGAAGTTTTTTTGT+TGG - chr1_1:79202557-79202576 Msa0046800:CDS 20.0%
!!! TTTTTTGTTGGTATGTTTTA+CGG - chr1_1:79202569-79202588 Msa0046800:CDS 20.0%
!! TGGATTTATATATATGTAGT+TGG - chr1_1:79203051-79203070 Msa0046800:intron 20.0%
!!! AATTTGATGCATTTTTTTCA+TGG + chr1_1:79203480-79203499 None:intergenic 20.0%
!! TACCTATTAATCGATTATAT+AGG - chr1_1:79204070-79204089 Msa0046800:five_prime_UTR 20.0%
!!! TCATTGCAACATGTTTTAAA+TGG - chr1_1:79199142-79199161 Msa0046800:CDS 25.0%
! AAATAGAAACAAACAAGCAA+AGG + chr1_1:79199202-79199221 None:intergenic 25.0%
! AATAGTATAAGGTGAGTTTA+TGG + chr1_1:79199261-79199280 None:intergenic 25.0%
! CACTAAAACACTCTTATTAA+TGG - chr1_1:79199367-79199386 Msa0046800:intron 25.0%
! GACAATTATTATTAAACGGA+AGG - chr1_1:79199519-79199538 Msa0046800:CDS 25.0%
! CAATTATTATTAAACGGAAG+GGG - chr1_1:79199521-79199540 Msa0046800:CDS 25.0%
! ATTGTCAAATATGTAGTGAT+GGG - chr1_1:79199731-79199750 Msa0046800:intron 25.0%
! AAAAAACCTTGATGTGTATT+TGG - chr1_1:79199782-79199801 Msa0046800:intron 25.0%
!! CTAATATTGATATGCGTTTT+TGG - chr1_1:79199913-79199932 Msa0046800:intron 25.0%
! CAATTTGACCATATCATATA+AGG - chr1_1:79199972-79199991 Msa0046800:intron 25.0%
! GGAAAATATGCAAAATAGTT+AGG + chr1_1:79200193-79200212 None:intergenic 25.0%
! AAATATTTCATATGCCTTGT+GGG + chr1_1:79200483-79200502 None:intergenic 25.0%
! AAAATATTTCATATGCCTTG+TGG + chr1_1:79200484-79200503 None:intergenic 25.0%
!!! GACTGGTTTATAAAAAACAA+TGG + chr1_1:79200783-79200802 None:intergenic 25.0%
! AAAAAAGCTGTATATTCATG+GGG - chr1_1:79200825-79200844 Msa0046800:intron 25.0%
!!! GACTTCTTTTAAAAAATGCA+AGG + chr1_1:79200868-79200887 None:intergenic 25.0%
! TAAGAGGACTTTAATTCTTA+CGG + chr1_1:79201124-79201143 None:intergenic 25.0%
! TTATTAGAAACTAGCATAAG+AGG + chr1_1:79201140-79201159 None:intergenic 25.0%
! TATGTATCTTACTAGTATGA+TGG - chr1_1:79201247-79201266 Msa0046800:intron 25.0%
! ATGTATCTTACTAGTATGAT+GGG - chr1_1:79201248-79201267 Msa0046800:intron 25.0%
! ATCTGAAGATTGTACTAAAT+AGG - chr1_1:79201503-79201522 Msa0046800:intron 25.0%
! TACTAAATAGGTGATAAACA+TGG - chr1_1:79201515-79201534 Msa0046800:intron 25.0%
! ACTAAATAGGTGATAAACAT+GGG - chr1_1:79201516-79201535 Msa0046800:intron 25.0%
!! TTTTACCAACTAAAACTCTA+TGG - chr1_1:79201542-79201561 Msa0046800:intron 25.0%
!!! ATATTCAAATCAAGTTGAGA+TGG - chr1_1:79201611-79201630 Msa0046800:intron 25.0%
! ACTTACTAGTATAACAATCA+AGG - chr1_1:79201771-79201790 Msa0046800:CDS 25.0%
! ACATGTATTGTTATCTTCTT+GGG + chr1_1:79201922-79201941 None:intergenic 25.0%
!! TACCAAAAGTTTTCACAAAA+TGG - chr1_1:79201983-79202002 Msa0046800:intron 25.0%
!! AACCATTTTGTGAAAACTTT+TGG + chr1_1:79201988-79202007 None:intergenic 25.0%
! TTTAGACATGGATTTGATAA+CGG - chr1_1:79202026-79202045 Msa0046800:intron 25.0%
! TTTATGTTGGTCATTTCATA+GGG + chr1_1:79202079-79202098 None:intergenic 25.0%
!! TTTTATGTTGGTCATTTCAT+AGG + chr1_1:79202080-79202099 None:intergenic 25.0%
! TTAACATGAATGCACATAAA+TGG - chr1_1:79202278-79202297 Msa0046800:intron 25.0%
!! TCCAGAATTTCTGAAAAATA+AGG - chr1_1:79202475-79202494 Msa0046800:CDS 25.0%
!!! ACCTTATTTTTCAGAAATTC+TGG + chr1_1:79202479-79202498 None:intergenic 25.0%
!! GAATTTCTGAAAAATAAGGT+AGG - chr1_1:79202479-79202498 Msa0046800:CDS 25.0%
!! TTTTTGTTGGTATGTTTTAC+GGG - chr1_1:79202570-79202589 Msa0046800:CDS 25.0%
! AAATCATGATCACATCAAAA+CGG + chr1_1:79203004-79203023 None:intergenic 25.0%
! TGCATCAAATTTATATACTC+AGG - chr1_1:79203489-79203508 Msa0046800:intron 25.0%
!! AAGTGTTTTCATAACACATA+CGG - chr1_1:79203627-79203646 Msa0046800:CDS 25.0%
! GTATGCATAAATTAACTTCT+GGG - chr1_1:79203649-79203668 Msa0046800:CDS 25.0%
! GGAAAAAAAATCACAAATCA+AGG + chr1_1:79203925-79203944 None:intergenic 25.0%
! TTAATAGGTAACAAATTCTG+TGG + chr1_1:79204060-79204079 None:intergenic 25.0%
! TGCCTATATAATCGATTAAT+AGG + chr1_1:79204075-79204094 None:intergenic 25.0%
! GTGTTGTGACTTACATATTT+TGG + chr1_1:79198730-79198749 None:intergenic 30.0%
AAAACATGTTGCAATGATTC+AGG + chr1_1:79199139-79199158 None:intergenic 30.0%
ATCAACACTCATTCTCTTAT+TGG - chr1_1:79199583-79199602 Msa0046800:intron 30.0%
TCAACACTCATTCTCTTATT+GGG - chr1_1:79199584-79199603 Msa0046800:intron 30.0%
! AGTACCTATACTTTGGAAAT+GGG + chr1_1:79199630-79199649 None:intergenic 30.0%
! TAGTACCTATACTTTGGAAA+TGG + chr1_1:79199631-79199650 None:intergenic 30.0%
CATTGTCAAATATGTAGTGA+TGG - chr1_1:79199730-79199749 Msa0046800:intron 30.0%
TTGTCAAATATGTAGTGATG+GGG - chr1_1:79199732-79199751 Msa0046800:intron 30.0%
AGACAAGTCCTTATATGATA+TGG + chr1_1:79199983-79200002 None:intergenic 30.0%
ATGGATGTGATTATATTGCA+GGG - chr1_1:79200555-79200574 Msa0046800:CDS 30.0%
TGATAATAATGCAACCTCAA+AGG + chr1_1:79200915-79200934 None:intergenic 30.0%
! TTTGAGGTTGCATTATTATC+AGG - chr1_1:79200914-79200933 Msa0046800:intron 30.0%
TTGAGGTTGCATTATTATCA+GGG - chr1_1:79200915-79200934 Msa0046800:intron 30.0%
!! TTTGCAAATTAGAAAGTGCT+CGG - chr1_1:79201271-79201290 Msa0046800:intron 30.0%
! TTTCTTCTTTTGTTAGATGC+TGG - chr1_1:79201355-79201374 Msa0046800:intron 30.0%
! TTCTTCTTTTGTTAGATGCT+GGG - chr1_1:79201356-79201375 Msa0046800:intron 30.0%
CTAAATAGGTGATAAACATG+GGG - chr1_1:79201517-79201536 Msa0046800:intron 30.0%
GTTTGTTCTGTATTTCTTGT+TGG - chr1_1:79201576-79201595 Msa0046800:intron 30.0%
CACATGTATTGTTATCTTCT+TGG + chr1_1:79201923-79201942 None:intergenic 30.0%
CAAGAAGATAACAATACATG+TGG - chr1_1:79201921-79201940 Msa0046800:intron 30.0%
AATCTGATAATACTCGGTTA+TGG - chr1_1:79202137-79202156 Msa0046800:CDS 30.0%
ATCTGATAATACTCGGTTAT+GGG - chr1_1:79202138-79202157 Msa0046800:CDS 30.0%
ACATGAAACCAAATGTTGTT+GGG + chr1_1:79202178-79202197 None:intergenic 30.0%
!! AAGTTGATATGTGTTGATAC+AGG - chr1_1:79202418-79202437 Msa0046800:CDS 30.0%
TTGGCTTAAGTTTCTTAAAC+AGG - chr1_1:79202712-79202731 Msa0046800:intron 30.0%
GTTAATAGAGAGCAAAAACA+TGG + chr1_1:79202903-79202922 None:intergenic 30.0%
GGTATGCATAAATTAACTTC+TGG - chr1_1:79203648-79203667 Msa0046800:CDS 30.0%
ACACATTGTTTATCATCAAG+GGG + chr1_1:79203710-79203729 None:intergenic 30.0%
CACACATTGTTTATCATCAA+GGG + chr1_1:79203711-79203730 None:intergenic 30.0%
TGCTCTATTAGAGAGTTTAT+AGG - chr1_1:79203835-79203854 Msa0046800:CDS 30.0%
GAATCTCACAATAATCGAAT+AGG - chr1_1:79204139-79204158 Msa0046800:five_prime_UTR 30.0%
AACCACGTGAATGAATGTAA+GGG + chr1_1:79198830-79198849 None:intergenic 35.0%
GTATATACATACAGGGAAGA+AGG - chr1_1:79198870-79198889 Msa0046800:three_prime_UTR 35.0%
ATAGAAAGAGAACCTGAACT+TGG + chr1_1:79199010-79199029 None:intergenic 35.0%
CTCATGTAGTACCTATACTT+TGG + chr1_1:79199637-79199656 None:intergenic 35.0%
!! TTAGAGTGAGTGTTGAAAAG+AGG - chr1_1:79199681-79199700 Msa0046800:intron 35.0%
!! TAGAGTGAGTGTTGAAAAGA+GGG - chr1_1:79199682-79199701 Msa0046800:intron 35.0%
TGTCAAATATGTAGTGATGG+GGG - chr1_1:79199733-79199752 Msa0046800:intron 35.0%
AACCTTGATGTGTATTTGGA+TGG - chr1_1:79199786-79199805 Msa0046800:intron 35.0%
ACCTTGATGTGTATTTGGAT+GGG - chr1_1:79199787-79199806 Msa0046800:intron 35.0%
TTGTCTGATAAGCGCTTATA+TGG - chr1_1:79199997-79200016 Msa0046800:intron 35.0%
ATCTCATGTTAGTGCTCATT+TGG + chr1_1:79200047-79200066 None:intergenic 35.0%
! AAGCACGGATGTTTTTCTTT+CGG - chr1_1:79200085-79200104 Msa0046800:intron 35.0%
CTTTCTTGTCATAGATGTAC+AGG - chr1_1:79200132-79200151 Msa0046800:intron 35.0%
TACAGGAAAAGATACTACCT+GGG - chr1_1:79200149-79200168 Msa0046800:intron 35.0%
AAAAGAAATCATGAGGCAGA+AGG + chr1_1:79200351-79200370 None:intergenic 35.0%
CCAGTAGAAAAGAAATCATG+AGG + chr1_1:79200358-79200377 None:intergenic 35.0%
! CCTCATGATTTCTTTTCTAC+TGG - chr1_1:79200355-79200374 Msa0046800:intron 35.0%
! TTTTCTACTGGTAAGCTCTT+GGG - chr1_1:79200367-79200386 Msa0046800:intron 35.0%
CATTACACCGTGAATGAAAT+TGG - chr1_1:79200435-79200454 Msa0046800:intron 35.0%
CATGGATGTGATTATATTGC+AGG - chr1_1:79200554-79200573 Msa0046800:CDS 35.0%
TACCACATGTGTCATCTATA+TGG + chr1_1:79200805-79200824 None:intergenic 35.0%
CGCAAAATTTGTGGAAGAAT+CGG + chr1_1:79201025-79201044 None:intergenic 35.0%
! TTGCTTCAGAAAGTACATCA+GGG + chr1_1:79201053-79201072 None:intergenic 35.0%
! ATTGCTTCAGAAAGTACATC+AGG + chr1_1:79201054-79201073 None:intergenic 35.0%
ATTTCAAATGACATTGCCAG+TGG - chr1_1:79201072-79201091 Msa0046800:CDS 35.0%
! GAAAAAAGGTATAAGACCAC+TGG + chr1_1:79201091-79201110 None:intergenic 35.0%
ACGGTAGCACATAAGAAAAA+AGG + chr1_1:79201105-79201124 None:intergenic 35.0%
ACTATTAAGCGTGTAATGCA+CGG + chr1_1:79201172-79201191 None:intergenic 35.0%
TCATACAATCATTGGGTCAA+GGG - chr1_1:79201295-79201314 Msa0046800:intron 35.0%
TCATGAGACTAAGCAGTTAA+TGG + chr1_1:79201396-79201415 None:intergenic 35.0%
GATCTTAAATTGTGCATGCA+AGG - chr1_1:79201431-79201450 Msa0046800:intron 35.0%
ACCAACTAAAACTCTATGGT+TGG - chr1_1:79201546-79201565 Msa0046800:intron 35.0%
!! ACCAACCATAGAGTTTTAGT+TGG + chr1_1:79201550-79201569 None:intergenic 35.0%
! TCACTACATTTTATGTGTGC+AGG - chr1_1:79201660-79201679 Msa0046800:intron 35.0%
! TACATTTTATGTGTGCAGGT+TGG - chr1_1:79201664-79201683 Msa0046800:intron 35.0%
TATGTGAGTCCTAAGTAACT+AGG - chr1_1:79201845-79201864 Msa0046800:intron 35.0%
AGTTGTCTTCCTAGTTACTT+AGG + chr1_1:79201857-79201876 None:intergenic 35.0%
CTTCTTGGGTTTCTAACTTA+CGG + chr1_1:79201908-79201927 None:intergenic 35.0%
ATAGGGAATCTTCCAAGAAA+TGG + chr1_1:79202062-79202081 None:intergenic 35.0%
CACATGAAACCAAATGTTGT+TGG + chr1_1:79202179-79202198 None:intergenic 35.0%
! CAACAACATTTGGTTTCATG+TGG - chr1_1:79202177-79202196 Msa0046800:CDS 35.0%
TACGGGAAATCATGATTCTT+AGG - chr1_1:79202587-79202606 Msa0046800:CDS 35.0%
AAGAGAATATGTTTGTCAGG+GGG + chr1_1:79202645-79202664 None:intergenic 35.0%
GAAGAGAATATGTTTGTCAG+GGG + chr1_1:79202646-79202665 None:intergenic 35.0%
GGAAGAGAATATGTTTGTCA+GGG + chr1_1:79202647-79202666 None:intergenic 35.0%
AGGAAGAGAATATGTTTGTC+AGG + chr1_1:79202648-79202667 None:intergenic 35.0%
CATAAGCACACAATTAGACA+AGG + chr1_1:79202770-79202789 None:intergenic 35.0%
CTTGTCTAATTGTGTGCTTA+TGG - chr1_1:79202768-79202787 Msa0046800:intron 35.0%
!! AAAAAGTGATAGCGGTACAA+AGG + chr1_1:79203103-79203122 None:intergenic 35.0%
! AGTTTAAGTTACACGTGTGA+CGG + chr1_1:79203161-79203180 None:intergenic 35.0%
CATAAGAAACCACATTGCAA+TGG - chr1_1:79203265-79203284 Msa0046800:intron 35.0%
TGTTCAAGACACTAGATTCA+AGG - chr1_1:79203310-79203329 Msa0046800:intron 35.0%
! TTCAAGGTACTCTTTGTTCT+AGG - chr1_1:79203326-79203345 Msa0046800:intron 35.0%
TCATATGTACAAGTGTAACC+TGG - chr1_1:79203366-79203385 Msa0046800:intron 35.0%
CAAACTAAAGAGAATGTTCG+AGG + chr1_1:79203523-79203542 None:intergenic 35.0%
TGCCATTATCTTCAGAGTTT+GGG + chr1_1:79203564-79203583 None:intergenic 35.0%
TTGCCATTATCTTCAGAGTT+TGG + chr1_1:79203565-79203584 None:intergenic 35.0%
ACTCGACTCAGTAAATTCAA+CGG - chr1_1:79203603-79203622 Msa0046800:intron 35.0%
AGGGGAAGAACATATTACAT+AGG + chr1_1:79203692-79203711 None:intergenic 35.0%
GCACACATTGTTTATCATCA+AGG + chr1_1:79203712-79203731 None:intergenic 35.0%
TGATGATAAACAATGTGTGC+AGG - chr1_1:79203712-79203731 Msa0046800:intron 35.0%
TAAACTCTCTAATAGAGCAG+TGG + chr1_1:79203834-79203853 None:intergenic 35.0%
GATGACTCAAAAAGCAATGT+TGG + chr1_1:79203884-79203903 None:intergenic 35.0%
!!! ATTGCTTTTTGAGTCATCCA+TGG - chr1_1:79203886-79203905 Msa0046800:intron 35.0%
AAAACGAACGAGTCATGTAA+TGG + chr1_1:79203949-79203968 None:intergenic 35.0%
! ATTACATGACTCGTTCGTTT+TGG - chr1_1:79203948-79203967 Msa0046800:intron 35.0%
CAACCACGTGAATGAATGTA+AGG + chr1_1:79198831-79198850 None:intergenic 40.0%
CTTACATTCATTCACGTGGT+TGG - chr1_1:79198829-79198848 Msa0046800:three_prime_UTR 40.0%
AGGAAGTGAGTTAAAGCCAA+TGG - chr1_1:79198896-79198915 Msa0046800:three_prime_UTR 40.0%
AGAAGCTTTCCAAGATAACC+TGG + chr1_1:79199094-79199113 None:intergenic 40.0%
TGCAATGATTCAGGATGAGT+AGG + chr1_1:79199130-79199149 None:intergenic 40.0%
AGGGAGGGAGTAATAGTATA+AGG + chr1_1:79199272-79199291 None:intergenic 40.0%
TTCATCCAACACGTGAATGA+CGG - chr1_1:79199658-79199677 Msa0046800:intron 40.0%
TATCTCCTTGACTGCGATTA+AGG + chr1_1:79199759-79199778 None:intergenic 40.0%
TCCCATCCAAATACACATCA+AGG + chr1_1:79199791-79199810 None:intergenic 40.0%
! GTTGACAAGCTGTTAGTTTC+TGG - chr1_1:79199890-79199909 Msa0046800:intron 40.0%
CTGATAAGCGCTTATATGGT+AGG - chr1_1:79200001-79200020 Msa0046800:intron 40.0%
TAATCCCTCTTTCTCAAGCA+CGG - chr1_1:79200070-79200089 Msa0046800:intron 40.0%
! AGCACGGATGTTTTTCTTTC+GGG - chr1_1:79200086-79200105 Msa0046800:intron 40.0%
GTACAGGAAAAGATACTACC+TGG - chr1_1:79200148-79200167 Msa0046800:intron 40.0%
ACAGGAAAAGATACTACCTG+GGG - chr1_1:79200150-79200169 Msa0046800:intron 40.0%
! CTTTTCTACTGGTAAGCTCT+TGG - chr1_1:79200366-79200385 Msa0046800:intron 40.0%
! TGATGACGTTGCAAAATGCT+CGG - chr1_1:79200407-79200426 Msa0046800:intron 40.0%
AATTGGAGTTTGAACCCACA+AGG - chr1_1:79200466-79200485 Msa0046800:CDS 40.0%
TGTGATTATATTGCAGGGCA+AGG - chr1_1:79200560-79200579 Msa0046800:CDS 40.0%
GTGATTATATTGCAGGGCAA+GGG - chr1_1:79200561-79200580 Msa0046800:CDS 40.0%
TGATTATATTGCAGGGCAAG+GGG - chr1_1:79200562-79200581 Msa0046800:CDS 40.0%
GATGCATATGTCACAAGCTT+AGG + chr1_1:79200683-79200702 None:intergenic 40.0%
TTTGTAAAGCGGAGTGTGTT+TGG + chr1_1:79200709-79200728 None:intergenic 40.0%
GAAATGTCACTAACCATACC+TGG + chr1_1:79200739-79200758 None:intergenic 40.0%
CATGTGTCATCTATATGGAC+TGG + chr1_1:79200800-79200819 None:intergenic 40.0%
GTCCATATAGATGACACATG+TGG - chr1_1:79200800-79200819 Msa0046800:intron 40.0%
! GGTCTTTTGCTTTGACAGAT+AGG - chr1_1:79200964-79200983 Msa0046800:intron 40.0%
! CTTTTGCTTTGACAGATAGG+AGG - chr1_1:79200967-79200986 Msa0046800:intron 40.0%
! TGCTTCAGAAAGTACATCAG+GGG + chr1_1:79201052-79201071 None:intergenic 40.0%
ACACACACACATAACAAAGC+TGG + chr1_1:79201195-79201214 None:intergenic 40.0%
CTCATACAATCATTGGGTCA+AGG - chr1_1:79201294-79201313 Msa0046800:intron 40.0%
GAGACTAAGCAGTTAATGGA+AGG + chr1_1:79201392-79201411 None:intergenic 40.0%
! TTAGTGACTTTTGCCAATGC+AGG + chr1_1:79201721-79201740 None:intergenic 40.0%
! TGCATTGGCAAAAGTCACTA+AGG - chr1_1:79201720-79201739 Msa0046800:CDS 40.0%
!! ACAATCAAGGCATTGTAGTG+TGG - chr1_1:79201784-79201803 Msa0046800:CDS 40.0%
! ATTGGTAGCCCAACAACATT+TGG - chr1_1:79202167-79202186 Msa0046800:CDS 40.0%
CTGAACAGTCGAAGTTAGTA+AGG + chr1_1:79202306-79202325 None:intergenic 40.0%
TTCTCTTCCTCTACTGTTCA+TGG - chr1_1:79202658-79202677 Msa0046800:intron 40.0%
TTCCTCTACTGTTCATGGAT+TGG - chr1_1:79202663-79202682 Msa0046800:intron 40.0%
TCCTCTACTGTTCATGGATT+GGG - chr1_1:79202664-79202683 Msa0046800:intron 40.0%
GGTCCTATACTGAGTAAACA+GGG - chr1_1:79202685-79202704 Msa0046800:intron 40.0%
! GCTTATGGTATTGAATGTCC+AGG - chr1_1:79202783-79202802 Msa0046800:intron 40.0%
! TATGACCGTGTTTTCTTGAG+AGG + chr1_1:79202809-79202828 None:intergenic 40.0%
CGGTCATAGATTACAAAGAC+TGG - chr1_1:79202821-79202840 Msa0046800:intron 40.0%
AAAGACTGGCAAATTCCTCT+TGG - chr1_1:79202835-79202854 Msa0046800:intron 40.0%
AAGACTGGCAAATTCCTCTT+GGG - chr1_1:79202836-79202855 Msa0046800:intron 40.0%
TACACGTGTGACGGTAATTA+TGG + chr1_1:79203152-79203171 None:intergenic 40.0%
!! CATCCACAGTTTTAGTGATC+TGG + chr1_1:79203207-79203226 None:intergenic 40.0%
CAGATCACTAAAACTGTGGA+TGG - chr1_1:79203205-79203224 Msa0046800:intron 40.0%
!! ATGCGACTCTATGGATTAGA+AGG - chr1_1:79203230-79203249 Msa0046800:intron 40.0%
AATAAGCTGCCATTGCAATG+TGG + chr1_1:79203277-79203296 None:intergenic 40.0%
!!! TGCAATGGCAGCTTATTTTG+AGG - chr1_1:79203280-79203299 Msa0046800:intron 40.0%
TTATCTTCAGAGTTTGGGGA+AGG + chr1_1:79203559-79203578 None:intergenic 40.0%
! TCCCCAAACTCTGAAGATAA+TGG - chr1_1:79203559-79203578 Msa0046800:intron 40.0%
GCCATTATCTTCAGAGTTTG+GGG + chr1_1:79203563-79203582 None:intergenic 40.0%
CTCGACTCAGTAAATTCAAC+GGG - chr1_1:79203604-79203623 Msa0046800:intron 40.0%
!! CAATGTGTGCAGGTTTTATC+AGG - chr1_1:79203722-79203741 Msa0046800:intron 40.0%
TACATTCTACGTTTCGCAGT+AGG - chr1_1:79203749-79203768 Msa0046800:intron 40.0%
CAGCGTTCATTACGTATTTG+TGG - chr1_1:79204015-79204034 Msa0046800:intron 40.0%
AATCGAATAGGAGCTTCATG+TGG - chr1_1:79204151-79204170 Msa0046800:five_prime_UTR 40.0%
GTCCCTTACATTCATTCACG+TGG - chr1_1:79198825-79198844 Msa0046800:three_prime_UTR 45.0%
ACATACAGGGAAGAAGGAGA+AGG - chr1_1:79198876-79198895 Msa0046800:three_prime_UTR 45.0%
GAGAGAGCAAGGTCATAAGA+TGG - chr1_1:79198932-79198951 Msa0046800:CDS 45.0%
CCTGAACTTGGCTAAGAACT+GGG + chr1_1:79198998-79199017 None:intergenic 45.0%
ACCTGAACTTGGCTAAGAAC+TGG + chr1_1:79198999-79199018 None:intergenic 45.0%
!! TTCATTTTGAGAGGCAGGGA+GGG + chr1_1:79199287-79199306 None:intergenic 45.0%
!! ATTCATTTTGAGAGGCAGGG+AGG + chr1_1:79199288-79199307 None:intergenic 45.0%
!! CGCATTCATTTTGAGAGGCA+GGG + chr1_1:79199291-79199310 None:intergenic 45.0%
TGCCTCTCAAAATGAATGCG+CGG - chr1_1:79199291-79199310 Msa0046800:intron 45.0%
! AACCGCGCATTCATTTTGAG+AGG + chr1_1:79199296-79199315 None:intergenic 45.0%
!! ACGGAAGGGGTATTAAGAAG+TGG - chr1_1:79199534-79199553 Msa0046800:CDS 45.0%
GGGACCCATTTCCAAAGTAT+AGG - chr1_1:79199623-79199642 Msa0046800:intron 45.0%
TCTAACCGTCATTCACGTGT+TGG + chr1_1:79199666-79199685 None:intergenic 45.0%
!! TGACAGTGATTGAGAGTGCT+CGG - chr1_1:79199849-79199868 Msa0046800:intron 45.0%
ACATCCGTGCTTGAGAAAGA+GGG + chr1_1:79200077-79200096 None:intergenic 45.0%
AACATCCGTGCTTGAGAAAG+AGG + chr1_1:79200078-79200097 None:intergenic 45.0%
! GCACGGATGTTTTTCTTTCG+GGG - chr1_1:79200087-79200106 Msa0046800:intron 45.0%
AAAACCAGCGACGCTACTAT+TGG + chr1_1:79200218-79200237 None:intergenic 45.0%
!!! AGTAGCGTCGCTGGTTTTTT+AGG - chr1_1:79200220-79200239 Msa0046800:intron 45.0%
TTAGGAGAGATGCTTAGTGC+TGG - chr1_1:79200238-79200257 Msa0046800:intron 45.0%
!! TAGTGCTGGTCTCAACATTG+TGG - chr1_1:79200252-79200271 Msa0046800:intron 45.0%
!! AGTGCTGGTCTCAACATTGT+GGG - chr1_1:79200253-79200272 Msa0046800:intron 45.0%
TCAACATTGTGGGATTCAGC+TGG - chr1_1:79200263-79200282 Msa0046800:intron 45.0%
!! TGTTTCGAGTTCAGTTGCAG+CGG + chr1_1:79200299-79200318 None:intergenic 45.0%
TCGAAACAATTGTCCTCGAC+TGG - chr1_1:79200311-79200330 Msa0046800:CDS 45.0%
GATGACGTTGCAAAATGCTC+GGG - chr1_1:79200408-79200427 Msa0046800:intron 45.0%
GATTATATTGCAGGGCAAGG+GGG - chr1_1:79200563-79200582 Msa0046800:CDS 45.0%
TGAAGCTGTGGTAGTAGTGT+TGG - chr1_1:79200610-79200629 Msa0046800:intron 45.0%
! CTGGCAGGCTTTTTGTAAAG+CGG + chr1_1:79200720-79200739 None:intergenic 45.0%
TACAAAAAGCCTGCCAGGTA+TGG - chr1_1:79200723-79200742 Msa0046800:intron 45.0%
AAGTCCTTCTTTGCGTTGCT+TGG - chr1_1:79200883-79200902 Msa0046800:intron 45.0%
TTGCTTGGTTGCATCCTTTG+AGG - chr1_1:79200898-79200917 Msa0046800:intron 45.0%
! AGGGGAAAGCGCAAAATTTG+TGG + chr1_1:79201034-79201053 None:intergenic 45.0%
TGCTCGGCTCATACAATCAT+TGG - chr1_1:79201287-79201306 Msa0046800:intron 45.0%
GCTCGGCTCATACAATCATT+GGG - chr1_1:79201288-79201307 Msa0046800:intron 45.0%
TGTTGATCCTCTACCTGCAT+TGG - chr1_1:79201705-79201724 Msa0046800:CDS 45.0%
! ACTTTTGCCAATGCAGGTAG+AGG + chr1_1:79201715-79201734 None:intergenic 45.0%
CTCGGTTATGGGTGTCTTAT+TGG - chr1_1:79202149-79202168 Msa0046800:CDS 45.0%
AGTACCGCCACTTCATTGAT+GGG - chr1_1:79202236-79202255 Msa0046800:intron 45.0%
CTTCAACCCCATCAATGAAG+TGG + chr1_1:79202246-79202265 None:intergenic 45.0%
ACTTCGACTGTTCAGTGCTT+TGG - chr1_1:79202311-79202330 Msa0046800:intron 45.0%
CTTCGACTGTTCAGTGCTTT+GGG - chr1_1:79202312-79202331 Msa0046800:intron 45.0%
! CTGTTCAGTGCTTTGGGTTA+AGG - chr1_1:79202318-79202337 Msa0046800:intron 45.0%
TGTTTGTCAGGGGGATAACT+AGG + chr1_1:79202636-79202655 None:intergenic 45.0%
ACCCAATCCATGAACAGTAG+AGG + chr1_1:79202668-79202687 None:intergenic 45.0%
GGGTCCTATACTGAGTAAAC+AGG - chr1_1:79202684-79202703 Msa0046800:intron 45.0%
CGACCCTGTTTACTCAGTAT+AGG + chr1_1:79202691-79202710 None:intergenic 45.0%
ACTGAGTAAACAGGGTCGTT+TGG - chr1_1:79202693-79202712 Msa0046800:intron 45.0%
CAGACATACATCTGTGTCTG+TGG - chr1_1:79202922-79202941 Msa0046800:intron 45.0%
GCTCCAGATCACTAAAACTG+TGG - chr1_1:79203201-79203220 Msa0046800:intron 45.0%
GGTTTCTTATGTGAGTTCGC+AGG + chr1_1:79203256-79203275 None:intergenic 45.0%
TAGAGCGAAACTCTAATGCC+AGG + chr1_1:79203387-79203406 None:intergenic 45.0%
ACATGCCTCACTTCTGTCAA+CGG + chr1_1:79203779-79203798 None:intergenic 45.0%
AAGGCAGACAAGTGAAACCA+TGG + chr1_1:79203906-79203925 None:intergenic 45.0%
ACGAACGAGTCATGTAATGG+AGG + chr1_1:79203946-79203965 None:intergenic 45.0%
CTGTGGTTTATGCGCTATAC+AGG + chr1_1:79204043-79204062 None:intergenic 45.0%
GTACACACAGAGTGAGTGAG+TGG - chr1_1:79198620-79198639 Msa0046800:three_prime_UTR 50.0%
CCCAGTTCTTAGCCAAGTTC+AGG - chr1_1:79198995-79199014 Msa0046800:CDS 50.0%
AAGATAACCTGGCTGCAACG+GGG + chr1_1:79199083-79199102 None:intergenic 50.0%
CAAGATAACCTGGCTGCAAC+GGG + chr1_1:79199084-79199103 None:intergenic 50.0%
CCAAGATAACCTGGCTGCAA+CGG + chr1_1:79199085-79199104 None:intergenic 50.0%
GGATGAGTAGGAGCAGAATC+TGG + chr1_1:79199118-79199137 None:intergenic 50.0%
!! GCGCATTCATTTTGAGAGGC+AGG + chr1_1:79199292-79199311 None:intergenic 50.0%
TTGGGTGAAACCCTTGTGAG+TGG - chr1_1:79199602-79199621 Msa0046800:intron 50.0%
TGGGTGAAACCCTTGTGAGT+GGG - chr1_1:79199603-79199622 Msa0046800:intron 50.0%
GAAATGGGTCCCACTCACAA+GGG + chr1_1:79199615-79199634 None:intergenic 50.0%
!! GACAGTGATTGAGAGTGCTC+GGG - chr1_1:79199850-79199869 Msa0046800:intron 50.0%
!! ACAGTGATTGAGAGTGCTCG+GGG - chr1_1:79199851-79199870 Msa0046800:intron 50.0%
TACTACCTGGGGTGACACAT+TGG - chr1_1:79200161-79200180 Msa0046800:intron 50.0%
!! GTTTCGAGTTCAGTTGCAGC+GGG + chr1_1:79200298-79200317 None:intergenic 50.0%
CAAGGGGGTGGAGTTATACA+GGG - chr1_1:79200578-79200597 Msa0046800:CDS 50.0%
! AGCTGTGGTAGTAGTGTTGG+TGG - chr1_1:79200613-79200632 Msa0046800:intron 50.0%
CGCTTTACAAAAAGCCTGCC+AGG - chr1_1:79200718-79200737 Msa0046800:intron 50.0%
TGTCACTAACCATACCTGGC+AGG + chr1_1:79200735-79200754 None:intergenic 50.0%
GCAACCAAGCAACGCAAAGA+AGG + chr1_1:79200890-79200909 None:intergenic 50.0%
GACTAAATCCAGAGCTCTGC+AGG - chr1_1:79200989-79201008 Msa0046800:intron 50.0%
TTAAGCAACCTGCAGAGCTC+TGG + chr1_1:79201000-79201019 None:intergenic 50.0%
! GGTCACGCTATGCCATTTCT+TGG - chr1_1:79202047-79202066 Msa0046800:intron 50.0%
TCAATGAAGTGGCGGTACTC+TGG + chr1_1:79202235-79202254 None:intergenic 50.0%
! GAGTACCGCCACTTCATTGA+TGG - chr1_1:79202235-79202254 Msa0046800:intron 50.0%
GTACCGCCACTTCATTGATG+GGG - chr1_1:79202237-79202256 Msa0046800:intron 50.0%
CAACCCCATCAATGAAGTGG+CGG + chr1_1:79202243-79202262 None:intergenic 50.0%
CCAGGCCTCTCAAGAAAACA+CGG - chr1_1:79202801-79202820 Msa0046800:intron 50.0%
ACTTGCCTGCTAACCTACAC+TGG - chr1_1:79203178-79203197 Msa0046800:intron 50.0%
CTTGCCTGCTAACCTACACT+GGG - chr1_1:79203179-79203198 Msa0046800:intron 50.0%
! TGGATGGTGATGCGACTCTA+TGG - chr1_1:79203221-79203240 Msa0046800:intron 50.0%
CAGAGTTTGGGGAAGGCAAA+AGG + chr1_1:79203552-79203571 None:intergenic 50.0%
CTCAGTTGCTCAGCGTCCAT+TGG + chr1_1:79198915-79198934 None:intergenic 55.0%
GCTGAGCAACTGAGAGAGCA+AGG - chr1_1:79198921-79198940 Msa0046800:exon 55.0%
AGATAACCTGGCTGCAACGG+GGG + chr1_1:79199082-79199101 None:intergenic 55.0%
CCGTTGCAGCCAGGTTATCT+TGG - chr1_1:79199082-79199101 Msa0046800:intron 55.0%
GGAAATGGGTCCCACTCACA+AGG + chr1_1:79199616-79199635 None:intergenic 55.0%
CTTTGCCAATGTGTCACCCC+AGG + chr1_1:79200169-79200188 None:intergenic 55.0%
CCAGCGACGCTACTATTGGA+TGG + chr1_1:79200214-79200233 None:intergenic 55.0%
CCATCCAATAGTAGCGTCGC+TGG - chr1_1:79200211-79200230 Msa0046800:intron 55.0%
!! ATGAGGCAGAAGGAGTGCCT+TGG + chr1_1:79200341-79200360 None:intergenic 55.0%
TATATTGCAGGGCAAGGGGG+TGG - chr1_1:79200566-79200585 Msa0046800:CDS 55.0%
GCAAGGGGGTGGAGTTATAC+AGG - chr1_1:79200577-79200596 Msa0046800:CDS 55.0%
GGGAACAGCAAGTGAAGCTG+TGG - chr1_1:79200598-79200617 Msa0046800:intron 55.0%
CATGTGGATGCTGCGTATGC+TGG - chr1_1:79202193-79202212 Msa0046800:intron 55.0%
! CCGTGTTTTCTTGAGAGGCC+TGG + chr1_1:79202804-79202823 None:intergenic 55.0%
GGCAAATTCCTCTTGGGCGT+CGG - chr1_1:79202842-79202861 Msa0046800:intron 55.0%
!! TTCCTCTTGGGCGTCGGTTT+AGG - chr1_1:79202848-79202867 Msa0046800:intron 55.0%
! AGTGATCTGGAGCCCAGTGT+AGG + chr1_1:79203194-79203213 None:intergenic 55.0%
! GAGCACCGTTGACAGAAGTG+AGG - chr1_1:79203771-79203790 Msa0046800:CDS 55.0%
ATTTCTCCCCCGTTGCAGCC+AGG - chr1_1:79199073-79199092 Msa0046800:intron 60.0%
GGGGGCCTTAATCGCAGTCA+AGG - chr1_1:79199751-79199770 Msa0046800:intron 60.0%
!! TGTCCTCGACTGGCTTGCCA+AGG - chr1_1:79200321-79200340 Msa0046800:CDS 60.0%
CGCTCGCAGGATCTTGTCAC+GGG + chr1_1:79200642-79200661 None:intergenic 60.0%
CCGCTCGCAGGATCTTGTCA+CGG + chr1_1:79200643-79200662 None:intergenic 60.0%
CCGTGACAAGATCCTGCGAG+CGG - chr1_1:79200640-79200659 Msa0046800:intron 60.0%
CACCTAAACCGACGCCCAAG+AGG + chr1_1:79202853-79202872 None:intergenic 60.0%
GGAGCCCAGTGTAGGTTAGC+AGG + chr1_1:79203186-79203205 None:intergenic 60.0%
TGAGGCATGTCAGTGCAGCG+TGG - chr1_1:79203789-79203808 Msa0046800:CDS 60.0%
GTGCCTTGGCAAGCCAGTCG+AGG + chr1_1:79200327-79200346 None:intergenic 65.0%
GACAAGATCCTGCGAGCGGC+TGG - chr1_1:79200644-79200663 Msa0046800:intron 65.0%
AGATCCTGCGAGCGGCTGGA+CGG - chr1_1:79200648-79200667 Msa0046800:intron 65.0%
CGTTCCGTCCAGCCGCTCGC+AGG + chr1_1:79200655-79200674 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79198598 79204189 79198598 ID=Msa0046800;Name=Msa0046800
chr1_1 mRNA 79198598 79204189 79198598 ID=Msa0046800-mRNA-1;Parent=Msa0046800;Name=Msa0046800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=136|1|1|1|0.91|0.92|13|333|491
chr1_1 exon 79198598 79199053 79198598 ID=Msa0046800-mRNA-1:exon:27339;Parent=Msa0046800-mRNA-1
chr1_1 exon 79199139 79199276 79199139 ID=Msa0046800-mRNA-1:exon:27338;Parent=Msa0046800-mRNA-1
chr1_1 exon 79199456 79199579 79199456 ID=Msa0046800-mRNA-1:exon:27337;Parent=Msa0046800-mRNA-1
chr1_1 exon 79199918 79199982 79199918 ID=Msa0046800-mRNA-1:exon:27336;Parent=Msa0046800-mRNA-1
chr1_1 exon 79200291 79200347 79200291 ID=Msa0046800-mRNA-1:exon:27335;Parent=Msa0046800-mRNA-1
chr1_1 exon 79200448 79200612 79200448 ID=Msa0046800-mRNA-1:exon:27334;Parent=Msa0046800-mRNA-1
chr1_1 exon 79201046 79201105 79201046 ID=Msa0046800-mRNA-1:exon:27333;Parent=Msa0046800-mRNA-1
chr1_1 exon 79201665 79201805 79201665 ID=Msa0046800-mRNA-1:exon:27332;Parent=Msa0046800-mRNA-1
chr1_1 exon 79202048 79202211 79202048 ID=Msa0046800-mRNA-1:exon:27331;Parent=Msa0046800-mRNA-1
chr1_1 exon 79202411 79202641 79202411 ID=Msa0046800-mRNA-1:exon:27330;Parent=Msa0046800-mRNA-1
chr1_1 exon 79203624 79203696 79203624 ID=Msa0046800-mRNA-1:exon:27329;Parent=Msa0046800-mRNA-1
chr1_1 exon 79203771 79203903 79203771 ID=Msa0046800-mRNA-1:exon:27328;Parent=Msa0046800-mRNA-1
chr1_1 exon 79204052 79204189 79204052 ID=Msa0046800-mRNA-1:exon:27327;Parent=Msa0046800-mRNA-1
chr1_1 five_prime_UTR 79204054 79204189 79204054 ID=Msa0046800-mRNA-1:five_prime_utr;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79204052 79204053 79204052 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79203771 79203903 79203771 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79203624 79203696 79203624 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79202411 79202641 79202411 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79202048 79202211 79202048 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79201665 79201805 79201665 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79201046 79201105 79201046 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79200448 79200612 79200448 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79200291 79200347 79200291 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79199918 79199982 79199918 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79199456 79199579 79199456 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79199139 79199276 79199139 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 CDS 79198931 79199053 79198931 ID=Msa0046800-mRNA-1:cds;Parent=Msa0046800-mRNA-1
chr1_1 three_prime_UTR 79198598 79198930 79198598 ID=Msa0046800-mRNA-1:three_prime_utr;Parent=Msa0046800-mRNA-1
Gene Sequence

>Msa0046800

ATGGAAGAAGGAGAAGGAAGTGAGTTAAAGCCAATGGACGCTGAGCAACTGAGAGAGCAAGGTCATAAGATGGTTGATTTCATTGCTGATTACTACAAAACTATTGAAAATTTCCCAGTTCTTAGCCAAGTTCAGCCAGGTTATCTTGGAAAGCTTCTACCAGATTCTGCTCCTACTCATCCTGAATCATTGCAACATGTTTTAAATGATGTACAGGAAAAGATACTACCTGGGGTGACACATTGGCAAAGCCCTAACTATTTTGCATATTTTCCATCCAATAGTAGCGTCGCTGGTTTTTTAGGAGAGATGCTTAGTGCTGGTCTCAACATTGTGGGATTCAGCTGGATAACTTCTCCCGCTGCAACTGAACTCGAAACAATTGTCCTCGACTGGCTTGCCAAGGCACTCCTTCTGCCTCATGATTTCTTTTCTACTGGGCAAGGGGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTGGTAGTAGTGTTGGTGGCTGCCCGTGACAAGATCCTGCGAGCGGCTGGACGGAACGCTCTTCCTAAGCTTGTGACATATGCATCTGACCAAACACACTCCGCTTTACAAAAAGCCTGCCAGATAGGAGGACTAAATCCAGAGCTCTGCAGGTTGCTTAAAACCGATTCTTCCACAAATTTTGCGCTTTCCCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCCAGTGGTCTTATACCTTTTTTCTTATGTGCTACCGTTGGTACTACTTCATCAACAGCTGTTGATCCTCTACCTGCATTGGCAAAAGTCACTAAGCCCAACAACATTTGGTTTCATGTGGATGCTGCGTATGCTGGAAGTGCTTGTATATGTCCAGAGTACCGCCACTTCATTGATGGGGTTGAAGAAGCAGATTCATTTAACATGAATGCACATAAATGGTTCCTTACTAACTTCGACTGTTCAGTGCTTTGGGTTAAGGACAGAAGTGCTTTGATTCAGTCGCTGTCTACAAATCCAGAATTTCTGAAAAATAAGGCCTCTCAAGAAAACACGGTCATAGATTACAAAGACTGGCAAATTCCTCTTGGGCGTCGGTTTAGATCACTAAAACTGTGGATGGTGATGCGACTCTATGGATTAGAAGGCCTGCGAACTCACATAAGAAACCACATTGCAATGGCAGCTTATTTTGAGGAGCTTGTTGTTCAAGACACTAGATTCAAGGTTGTTGCGCCTCGAACATTCTCTTTAGTTTGTTTTCGCCTTTTGCCTTCCCCAAACTCTGAAGATAATGGCAATAAACTGAACCATGATCTACTCGACTCAGTAAATTCAACGGGAAGTGTTTTCATAACACATACGGTTTTATCAGGTGAGTACATTCTACGTTTCGCAGTAGGAGCACCGTTGACAGAAGTGAGGCATGTCAGTGCAGCGTGGCAGATTTTGCAAGAAAAAGCCACTGCTCTATTAGAGAGTTTATAG

Protein sequence

>Msa0046800

MEEGEGSELKPMDAEQLREQGHKMVDFIADYYKTIENFPVLSQVQPGYLGKLLPDSAPTHPESLQHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKALLLPHDFFSTGQGGGVIQGTASEAVVVVLVAARDKILRAAGRNALPKLVTYASDQTHSALQKACQIGGLNPELCRLLKTDSSTNFALSPDVLSEAISNDIASGLIPFFLCATVGTTSSTAVDPLPALAKVTKPNNIWFHVDAAYAGSACICPEYRHFIDGVEEADSFNMNAHKWFLTNFDCSVLWVKDRSALIQSLSTNPEFLKNKASQENTVIDYKDWQIPLGRRFRSLKLWMVMRLYGLEGLRTHIRNHIAMAAYFEELVVQDTRFKVVAPRTFSLVCFRLLPSPNSEDNGNKLNHDLLDSVNSTGSVFITHTVLSGEYILRFAVGAPLTEVRHVSAAWQILQEKATALLESL*