AlfalfaGEDB | Msa1312800

M. sativa cultivar zhongmu-4 / Msa1312800

KEGG: K00036
GO: GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564
PFAM: PF00479.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1312800	XP_014633122.1	81.186	590	61	5	1	542	1	588	0.0	956

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1312800	sp\|Q43839\|G6PDC_SOLTU	73.638	569	85	5	22	543	27	577	0.0	825

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1312800	A0A396GEM6	91.595	583	8	3	1	543	1	582	0.0	1079

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1312800	0.804405	2.194500e-49	-8.615850e-47
Msa0001510	Msa1312800	0.872622	2.760096e-67	-8.615850e-47
Msa0001540	Msa1312800	0.834145	3.550645e-56	-8.615850e-47
Msa0002060	Msa1312800	0.818502	1.895458e-52	-8.615850e-47
Msa0002690	Msa1312800	0.850106	2.104376e-60	-8.615850e-47
Msa0002700	Msa1312800	0.836010	1.202139e-56	-8.615850e-47
Msa0004180	Msa1312800	0.876632	1.196766e-68	-8.615850e-47
Msa0005910	Msa1312800	-0.823938	1.057728e-53	-8.615850e-47
Msa0007570	Msa1312800	0.819461	1.147682e-52	-8.615850e-47
Msa0009210	Msa1312800	0.872333	3.447410e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1312800	MtrunA17_Chr8g0341321	91.595	583	8	3	1	543	1	582	0.0	1079
Msa1312800	MtrunA17_Chr7g0222441	72.897	535	90	4	63	542	60	594	0.0	782
Msa1312800	MtrunA17_Chr7g0271531	50.104	481	190	4	96	536	128	598	2.13e-166	485
Msa1312800	MtrunA17_Chr8g0356781	91.111	225	15	1	324	543	1	225	6.08e-147	421
Msa1312800	MtrunA17_Chr7g0228611	47.853	489	189	8	93	531	27	499	1.05e-143	424
Msa1312800	MtrunA17_Chr6g0458971	45.875	497	204	6	85	531	21	502	4.39e-141	417
Msa1312800	MtrunA17_Chr8g0358431	90.000	190	7	1	199	376	16	205	7.31e-118	346
Msa1312800	MtrunA17_Chr8g0356771	83.824	136	8	1	199	320	16	151	2.19e-73	231
Msa1312800	MtrunA17_Chr8g0358411	96.907	97	3	0	447	543	1	97	1.98e-60	194
Msa1312800	MtrunA17_Chr8g0356701	85.714	105	3	1	301	393	1	105	2.30e-55	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1312800	AT5G35790.1	74.813	536	79	5	45	540	55	574	0.0	800
Msa1312800	AT5G13110.1	70.985	548	101	4	35	542	66	595	0.0	786
Msa1312800	AT1G24280.1	75.149	503	85	2	80	542	96	598	0.0	776
Msa1312800	AT1G09420.1	44.517	611	250	11	5	538	26	624	3.76e-171	498
Msa1312800	AT1G09420.2	43.478	621	252	11	5	538	26	634	1.72e-168	492
Msa1312800	AT3G27300.1	48.065	491	184	9	93	531	29	500	3.23e-145	428
Msa1312800	AT3G27300.3	48.065	491	184	9	93	531	29	500	3.23e-145	428
Msa1312800	AT3G27300.2	48.065	491	184	9	93	531	29	500	3.23e-145	428
Msa1312800	AT3G27300.5	48.065	491	184	9	93	531	83	554	1.89e-144	428
Msa1312800	AT3G27300.4	48.065	491	184	9	93	531	100	571	2.73e-144	428

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Find 138 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAACTCCGTCCCATC+TGG	0.444008	8_4:+10102170	None:intergenic
AAAGCTGCTGCAGCAAATGT+TGG	0.510413	8_4:+10102207	None:intergenic
AAATACCAGATGCTTATGAG+AGG	0.672774	8_4:-10101549	Msa1312800:CDS
AAATGACTGATGAAGAGTTA+AGG	0.494086	8_4:-10104752	Msa1312800:CDS
AAATTGTCATTTGAGTTAAC+TGG	0.303785	8_4:+10107078	None:intergenic
AACAACAAAGTTCCCGGTCT+GGG	0.442025	8_4:-10101873	Msa1312800:CDS
AACAACAGTTATACTAAGGT+TGG	0.501460	8_4:+10105008	None:intergenic
AACAATCCTTCAACTTGTTG+AGG	0.519106	8_4:+10105060	None:intergenic
AACAGAATCGTGTGAAGTTG+AGG	0.540718	8_4:+10106891	None:intergenic
AACCTTAGTATAACTGTTGT+TGG	0.383313	8_4:-10105006	Msa1312800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAATGAAAACAAAACGAG+GGG	+	chr8_4:10101012-10101031	None:intergenic	30.0%
AGATGTGACAATGTTTGAAT+AGG	+	chr8_4:10101307-10101326	None:intergenic	30.0%
TCAAACATTGTCACATCTTA+TGG	-	chr8_4:10101309-10101328	Msa1312800:three_prime_UTR	30.0%
GTGAATTTAGTACAAAGTTG+TGG	+	chr8_4:10101348-10101367	None:intergenic	30.0%
TTTCAGCTCAAATCTTCAAA+TGG	-	chr8_4:10101420-10101439	Msa1312800:CDS	30.0%
TTCAGCTCAAATCTTCAAAT+GGG	-	chr8_4:10101421-10101440	Msa1312800:CDS	30.0%
ATGAGAAGAAACAGCATTTA+GGG	+	chr8_4:10101451-10101470	None:intergenic	30.0%
AATTGCTAGATCAACTAACA+AGG	+	chr8_4:10101592-10101611	None:intergenic	30.0%
AACCTTATTCACAAACAAGT+TGG	+	chr8_4:10101784-10101803	None:intergenic	30.0%
ACATTTATGTCGTGAAAGAA+AGG	-	chr8_4:10101882-10101901	Msa1312800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	10101003	10107138	10101003	ID=Msa1312800;Name=Msa1312800
chr8_4	mRNA	10101003	10107138	10101003	ID=Msa1312800-mRNA-1;Parent=Msa1312800;Name=Msa1312800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=228\|0.8\|0.81\|1\|0.8\|0.81\|11\|330\|543
chr8_4	exon	10101003	10101582	10101003	ID=Msa1312800-mRNA-1:exon:3854;Parent=Msa1312800-mRNA-1
chr8_4	exon	10101828	10102028	10101828	ID=Msa1312800-mRNA-1:exon:3853;Parent=Msa1312800-mRNA-1
chr8_4	exon	10102135	10102364	10102135	ID=Msa1312800-mRNA-1:exon:3852;Parent=Msa1312800-mRNA-1
chr8_4	exon	10102936	10103020	10102936	ID=Msa1312800-mRNA-1:exon:3851;Parent=Msa1312800-mRNA-1
chr8_4	exon	10103110	10103259	10103110	ID=Msa1312800-mRNA-1:exon:3850;Parent=Msa1312800-mRNA-1
chr8_4	exon	10103367	10103488	10103367	ID=Msa1312800-mRNA-1:exon:3849;Parent=Msa1312800-mRNA-1
chr8_4	exon	10104165	10104279	10104165	ID=Msa1312800-mRNA-1:exon:3848;Parent=Msa1312800-mRNA-1
chr8_4	exon	10104711	10104805	10104711	ID=Msa1312800-mRNA-1:exon:3847;Parent=Msa1312800-mRNA-1
chr8_4	exon	10104930	10105120	10104930	ID=Msa1312800-mRNA-1:exon:3846;Parent=Msa1312800-mRNA-1
chr8_4	exon	10106667	10106986	10106667	ID=Msa1312800-mRNA-1:exon:3845;Parent=Msa1312800-mRNA-1
chr8_4	exon	10107038	10107138	10107038	ID=Msa1312800-mRNA-1:exon:3844;Parent=Msa1312800-mRNA-1
chr8_4	five_prime_UTR	10107038	10107138	10107038	ID=Msa1312800-mRNA-1:five_prime_utr;Parent=Msa1312800-mRNA-1
chr8_4	five_prime_UTR	10106860	10106986	10106860	ID=Msa1312800-mRNA-1:five_prime_utr;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10106667	10106859	10106667	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10104930	10105120	10104930	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10104711	10104805	10104711	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10104165	10104279	10104165	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10103367	10103488	10103367	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10103110	10103259	10103110	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10102936	10103020	10102936	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10102135	10102364	10102135	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10101828	10102028	10101828	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	CDS	10101333	10101582	10101333	ID=Msa1312800-mRNA-1:cds;Parent=Msa1312800-mRNA-1
chr8_4	three_prime_UTR	10101003	10101332	10101003	ID=Msa1312800-mRNA-1:three_prime_utr;Parent=Msa1312800-mRNA-1

Gene Sequence

>Msa1312800

ATGGCAAGTGTACTAGGTTCTTCCTATTCAAACATTGTCACATCTTATGGATTCAAGAATGAACCACAACTTTGTACTAAATTCACTACTCTATGCCTTTCTTGCATTAGCCAACATGGAAACAAGGGTAGAAAACATTTTCAGCTCAAATCTTCAAATGGGCATCCCCTAAATGCTGTTTCTTCTCATGATGGTTTGGCTGGAAGTTCATTGGCCAAAGAAGATGGCCAGCCTCAACAAGTTGAAGGATTGTTTTCATTGTCAGACTCTGAATCCACAGGATCCAACCTTAGTATAACTGTTGTTGGAGCATCTGGAGACCTTGCCAAAAAGAAGATTTTTCCAGCACTCTTTGCTCTTTTCTATGAAGATTGGTTACCCGAGAATTTTATTGTGTTTGGATATGCTCGGACCAAAATGACTGATGAAGAGTTAAGGAACATGATTAGCCAGACTTTAACATGCAGAATTGACAAGAGGGCAAATTGTGCAGATAAAATGGATCAATTCTTGAAAAGATGCTTTTACCATTCTGGTCTGTACAACTCTGAGGAAGACTTTGTTGATTTGGATTCCAAGCTAAAAGAGAAAGAGGCTTCTTCAAAAGATGGCTGGACAAGGGTAATTGTGGAAAAGCCGTTTGGTCGTGATTCTGAATCCTCTAGTGAGCTAACAAGAAGTTTGAAGCAGTACCTCACTGAAGACCAAATATTCAGGATTGACCATTACTTGGGTAAGGAGCTTGTGGAGAATCTCTCAGTGCTTCGTTTTTCAAATCTTGTTTTTGAGCCTCTATGGTCCCGGAATTACATTCGTAATGTGCAGCTAATATTTTCTGAAGATTTTGGAACAGAAGGAAGAGGAGGTTATTTTGATAACTACGGAATTATTCGTGATATAATGCAAAATCACCTTGTACAAATACTAGCATTGTTTGCAATGGAGCCACCTGTGAAGGTTCTGAGATCAATGAGACCAATACAGCTTGAAGATGTTGTAGTTGGTCAATATAAGGGCCATAGTAAGGGTGGTAGATCATATCCTGCTTATATTGACGACTCAGCTGTTCCAAAGGGTAGTCTTACTCCAACATTTGCTGCAGCAGCTTTGTTTATTGGCAATGCCAGATGGGACGGAGTTCCTTTTCTCATGAAAGCCGGCAAGGCTCTTCATACTAAAGGTGCAGAAATCAGAGTACAATTCAGACACGTCCCGGGTAACTTGTACAAACGGAACTTTGGAACTGATTTGGACAAAGCTACAAATGAGCTTGTGCTTCGTGTACAACCTGATGAAGCTATATATTTGAAGATCAACAACAAAGTTCCCGGTCTGGGAATGAGATTAGACAGAAGTGACCTCAATTTGCTTTACAGATCAAGGTATGCAAGAGAAATACCAGATGCTTATGAGAGGTTACTCTTAGATGCTATTGAAGGCGAACGAAGGCTGTTTATCAGAAGTGATGAACTTGATGCAGCTTGGGCACTATTCACTCCTTTGCTAAAAGAAATTGAAAACAAGAAGATTGCTCCAGAGCTTTATCCTTATGGTAGCAGAGGACCGGTTGGAGCACACTACCTTGCTGCAAGGCACAATGTAAGATGGGGAGATCTTGGTGGCGATGACTGA

Protein sequence

>Msa1312800

MASVLGSSYSNIVTSYGFKNEPQLCTKFTTLCLSCISQHGNKGRKHFQLKSSNGHPLNAVSSHDGLAGSSLAKEDGQPQQVEGLFSLSDSESTGSNLSITVVGASGDLAKKKIFPALFALFYEDWLPENFIVFGYARTKMTDEELRNMISQTLTCRIDKRANCADKMDQFLKRCFYHSGLYNSEEDFVDLDSKLKEKEASSKDGWTRVIVEKPFGRDSESSSELTRSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLVQILALFAMEPPVKVLRSMRPIQLEDVVVGQYKGHSKGGRSYPAYIDDSAVPKGSLTPTFAAAALFIGNARWDGVPFLMKAGKALHTKGAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLYRSRYAREIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKEIENKKIAPELYPYGSRGPVGAHYLAARHNVRWGDLGGDD*