AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163230 MtrunA17_Chr7g0259951 94.737 171 9 0 1 171 1 171 1.68e-117 329
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163230 AT4G02725.1 55.479 146 57 4 25 169 25 163 7.49e-51 160
Msa1163230 AT4G02725.2 55.200 125 42 5 25 145 25 139 2.56e-37 125

Find 54 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGAAGAATTAGAGAAAA+TGG 0.211325 7_4:-54302976 None:intergenic
CGACGGTGGAGGAGGGAAAT+TGG 0.243426 7_4:-54302894 None:intergenic
CCATGGACAATTACGCTAAC+TGG 0.251804 7_4:+54303240 Msa1163230:CDS
ACCAGACAATCCTCTCTTCT+TGG 0.287383 7_4:+54303043 Msa1163230:CDS
TTTGGGACACCAAACCTTCT+TGG 0.314174 7_4:+54303135 Msa1163230:CDS
ATTGAAGAATTAGAGAAAAT+GGG 0.329408 7_4:-54302975 None:intergenic
CTCTTGAATACGAATCTGTT+TGG 0.339120 7_4:+54303117 Msa1163230:CDS
CAGATTCGTATTCAAGAGAT+AGG 0.366514 7_4:-54303112 None:intergenic
ATTGTCTGGTCTTGAGTCAC+TGG 0.379493 7_4:-54303030 None:intergenic
GGGATTGATACCAAAGAGTA+TGG 0.383918 7_4:-54303009 None:intergenic
GAGTGAGTTGTTAGAGTTGG+AGG 0.392002 7_4:-54302930 None:intergenic
GACGGCGTTGAAGACACTTT+TGG 0.394785 7_4:+54304869 Msa1163230:CDS
TTTCAATAATTTCCATTAGC+TGG 0.398242 7_4:+54303265 Msa1163230:CDS
GTTGAAAATTAACCAGCTAA+TGG 0.407947 7_4:-54303277 None:intergenic
TCTTGAATACGAATCTGTTT+GGG 0.409992 7_4:+54303118 Msa1163230:CDS
TGTTAGAGTTGGAGGAGAAG+AGG 0.420686 7_4:-54302922 None:intergenic
AGGAAGGTCGACGGTGGAGG+AGG 0.420867 7_4:-54302902 None:intergenic
CAACAGAACAGTAGCTGTTA+AGG 0.421642 7_4:+54304984 Msa1163230:three_prime_UTR
ATTATTTCTGTAAATTAGCT+TGG 0.423476 7_4:+54305018 Msa1163230:three_prime_UTR
GACGGTGGAGGAGGGAAATT+GGG 0.424088 7_4:-54302893 None:intergenic
GGGACCGTCGTCATGTTAAC+TGG 0.435000 7_4:-54302858 None:intergenic
AAGAGGAAGGTCGACGGTGG+AGG 0.438742 7_4:-54302905 None:intergenic
CTTTCTATATTCTTATCCTA+AGG 0.452125 7_4:+54303353 Msa1163230:CDS
TACAGAAATAATGTGAATAG+AGG 0.462999 7_4:-54305007 None:intergenic
TGAGAGTGAGTTGTTAGAGT+TGG 0.471854 7_4:-54302933 None:intergenic
AAATGGGGTTAAAGAAATTG+TGG 0.482560 7_4:-54302959 None:intergenic
CATGACGACGGTCCCTCTCT+TGG 0.483863 7_4:+54302866 Msa1163230:exon
CAAACTGTACCAAGAAGGTT+TGG 0.485689 7_4:-54303144 None:intergenic
AAATTAGCTTGGAGATCATA+TGG 0.485990 7_4:+54305029 Msa1163230:three_prime_UTR
CATGGACAATTACGCTAACT+GGG 0.486854 7_4:+54303241 Msa1163230:CDS
GATTGCTGAGCGCAGAGAAA+AGG 0.501074 7_4:+54304841 Msa1163230:CDS
TCCAAGAAGAGAGGATTGTC+TGG 0.504908 7_4:-54303044 None:intergenic
GGAAGGTCGACGGTGGAGGA+GGG 0.526362 7_4:-54302901 None:intergenic
TTGAAGAATTAGAGAAAATG+GGG 0.534894 7_4:-54302974 None:intergenic
AGAGTTGGAGGAGAAGAGGA+AGG 0.535998 7_4:-54302918 None:intergenic
CAATGCTGTGGTCGATGACA+TGG 0.554714 7_4:+54303073 Msa1163230:CDS
ATTCAAGAGATAGGTTATTG+AGG 0.554824 7_4:-54303103 None:intergenic
CCAGTTAGCGTAATTGTCCA+TGG 0.554834 7_4:-54303240 None:intergenic
TTGTCTGGTCTTGAGTCACT+GGG 0.556457 7_4:-54303029 None:intergenic
GAGAAGAGGAAGGTCGACGG+TGG 0.564758 7_4:-54302908 None:intergenic
AATGGGGTTAAAGAAATTGT+GGG 0.568815 7_4:-54302958 None:intergenic
GATGAGCACAAGTGAAGAGT+GGG 0.581928 7_4:-54304922 None:intergenic
AGATGAGCACAAGTGAAGAG+TGG 0.598281 7_4:-54304923 None:intergenic
TATCTTTACTCATATTCGCG+TGG 0.601673 7_4:+54303322 Msa1163230:CDS
CGCAGAGAAAAGGTTACAGA+CGG 0.609857 7_4:+54304851 Msa1163230:CDS
CTTTGTTTAGGTGTCAACCA+TGG 0.611918 7_4:+54303223 Msa1163230:intron
GAGGAGAAGAGGAAGGTCGA+CGG 0.615612 7_4:-54302911 None:intergenic
GAAATTGGGAGTACCAAGAG+AGG 0.651858 7_4:-54302879 None:intergenic
CTTGGACGAAAACAATGCTG+TGG 0.651876 7_4:+54303061 Msa1163230:CDS
CTTTACTCATATTCGCGTGG+TGG 0.660745 7_4:+54303325 Msa1163230:CDS
AAATTGGGAGTACCAAGAGA+GGG 0.666862 7_4:-54302878 None:intergenic
ATGGACAATTACGCTAACTG+GGG 0.695966 7_4:+54303242 Msa1163230:CDS
GTGACCAGTTAACATGACGA+CGG 0.742822 7_4:+54302854 Msa1163230:exon
GCTGTGGTCGATGACATGGA+CGG 0.762936 7_4:+54303077 Msa1163230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAGAGTAATAGTTA+AGG + chr7_4:54303432-54303451 Msa1163230:intron 15.0%
!!! AGCTATGTTTTTTTTTTTTT+TGG - chr7_4:54304552-54304571 None:intergenic 15.0%
!!! TATTTTTAGAGTAATAGTTA+AGG + chr7_4:54303432-54303451 Msa1163230:intron 15.0%
!!! AGCTATGTTTTTTTTTTTTT+TGG - chr7_4:54304552-54304571 None:intergenic 15.0%
!! ATTGAAGAATTAGAGAAAAT+GGG - chr7_4:54302978-54302997 None:intergenic 20.0%
!!! TCTAAAAATGTAGTTGTTTT+TGG - chr7_4:54303715-54303734 None:intergenic 20.0%
!! CTGACAGTTAAAAAAAATAT+TGG - chr7_4:54304807-54304826 None:intergenic 20.0%
!!! CAATATTTTTTTTAACTGTC+AGG + chr7_4:54304805-54304824 Msa1163230:intron 20.0%
!!! ATTATTTCTGTAAATTAGCT+TGG + chr7_4:54305018-54305037 Msa1163230:three_prime_UTR 20.0%
!! TACACTTTATGTAAAAATGT+TGG + chr7_4:54305085-54305104 Msa1163230:three_prime_UTR 20.0%
!! ATTGAAGAATTAGAGAAAAT+GGG - chr7_4:54302978-54302997 None:intergenic 20.0%
!!! TCTAAAAATGTAGTTGTTTT+TGG - chr7_4:54303715-54303734 None:intergenic 20.0%
!! CTGACAGTTAAAAAAAATAT+TGG - chr7_4:54304807-54304826 None:intergenic 20.0%
!!! CAATATTTTTTTTAACTGTC+AGG + chr7_4:54304805-54304824 Msa1163230:intron 20.0%
!!! ATTATTTCTGTAAATTAGCT+TGG + chr7_4:54305018-54305037 Msa1163230:three_prime_UTR 20.0%
!! TACACTTTATGTAAAAATGT+TGG + chr7_4:54305085-54305104 Msa1163230:three_prime_UTR 20.0%
! TTGAAGAATTAGAGAAAATG+GGG - chr7_4:54302977-54302996 None:intergenic 25.0%
! GATTGAAGAATTAGAGAAAA+TGG - chr7_4:54302979-54302998 None:intergenic 25.0%
! AACAAAAAATCCATACTCTT+TGG + chr7_4:54302999-54303018 Msa1163230:CDS 25.0%
! TTTCAATAATTTCCATTAGC+TGG + chr7_4:54303265-54303284 Msa1163230:CDS 25.0%
! CTTTCTATATTCTTATCCTA+AGG + chr7_4:54303353-54303372 Msa1163230:CDS 25.0%
! GAATTGGGATATAGAATATA+GGG + chr7_4:54303852-54303871 Msa1163230:intron 25.0%
!!! AGTTAGTTGATAAGTTTGTT+CGG + chr7_4:54303910-54303929 Msa1163230:intron 25.0%
!!! GTTGTTAAAAGCTGTTATTT+TGG + chr7_4:54303935-54303954 Msa1163230:intron 25.0%
! ATGCATTACAATAACTAAGA+AGG - chr7_4:54304210-54304229 None:intergenic 25.0%
! TAGTTATTGTAATGCATTTG+TGG + chr7_4:54304213-54304232 Msa1163230:intron 25.0%
!! AGCACAAAATAGAAGTTTTA+TGG + chr7_4:54304265-54304284 Msa1163230:intron 25.0%
! TAAACAAAGGAAAACTACAA+GGG - chr7_4:54304510-54304529 None:intergenic 25.0%
!! TTATTATGTACTGATGTTCA+AGG - chr7_4:54304587-54304606 None:intergenic 25.0%
! TACAGAAATAATGTGAATAG+AGG - chr7_4:54305010-54305029 None:intergenic 25.0%
! TTATGTAAAAATGTTGGACT+AGG + chr7_4:54305091-54305110 Msa1163230:three_prime_UTR 25.0%
! TTGAAGAATTAGAGAAAATG+GGG - chr7_4:54302977-54302996 None:intergenic 25.0%
! GATTGAAGAATTAGAGAAAA+TGG - chr7_4:54302979-54302998 None:intergenic 25.0%
! AACAAAAAATCCATACTCTT+TGG + chr7_4:54302999-54303018 Msa1163230:CDS 25.0%
! TTTCAATAATTTCCATTAGC+TGG + chr7_4:54303265-54303284 Msa1163230:CDS 25.0%
! CTTTCTATATTCTTATCCTA+AGG + chr7_4:54303353-54303372 Msa1163230:CDS 25.0%
! GAATTGGGATATAGAATATA+GGG + chr7_4:54303852-54303871 Msa1163230:intron 25.0%
!!! AGTTAGTTGATAAGTTTGTT+CGG + chr7_4:54303910-54303929 Msa1163230:intron 25.0%
!!! GTTGTTAAAAGCTGTTATTT+TGG + chr7_4:54303935-54303954 Msa1163230:intron 25.0%
! ATGCATTACAATAACTAAGA+AGG - chr7_4:54304210-54304229 None:intergenic 25.0%
! TAGTTATTGTAATGCATTTG+TGG + chr7_4:54304213-54304232 Msa1163230:intron 25.0%
!! AGCACAAAATAGAAGTTTTA+TGG + chr7_4:54304265-54304284 Msa1163230:intron 25.0%
! TAAACAAAGGAAAACTACAA+GGG - chr7_4:54304510-54304529 None:intergenic 25.0%
!! TTATTATGTACTGATGTTCA+AGG - chr7_4:54304587-54304606 None:intergenic 25.0%
! TACAGAAATAATGTGAATAG+AGG - chr7_4:54305010-54305029 None:intergenic 25.0%
! TTATGTAAAAATGTTGGACT+AGG + chr7_4:54305091-54305110 Msa1163230:three_prime_UTR 25.0%
AATGGGGTTAAAGAAATTGT+GGG - chr7_4:54302961-54302980 None:intergenic 30.0%
AAATGGGGTTAAAGAAATTG+TGG - chr7_4:54302962-54302981 None:intergenic 30.0%
ATTCAAGAGATAGGTTATTG+AGG - chr7_4:54303106-54303125 None:intergenic 30.0%
TCTTGAATACGAATCTGTTT+GGG + chr7_4:54303118-54303137 Msa1163230:CDS 30.0%
AAAAACAAACTGTACCAAGA+AGG - chr7_4:54303152-54303171 None:intergenic 30.0%
!! GTATTTGTCATGCTTTGTTT+AGG + chr7_4:54303211-54303230 Msa1163230:intron 30.0%
GTTGAAAATTAACCAGCTAA+TGG - chr7_4:54303280-54303299 None:intergenic 30.0%
AGTACTTTATGCGCTTAATT+TGG + chr7_4:54303462-54303481 Msa1163230:intron 30.0%
AAGTACTCTTAGGTCTAAAA+AGG - chr7_4:54303521-54303540 None:intergenic 30.0%
!!! TTTTTAGACCTAAGAGTACT+TGG + chr7_4:54303520-54303539 Msa1163230:intron 30.0%
!! AGAGGTGTTAAATCTCTTAA+GGG + chr7_4:54303608-54303627 Msa1163230:intron 30.0%
TACTCACTTATCAGCAATAT+GGG - chr7_4:54303769-54303788 None:intergenic 30.0%
TAGAGTCTTTGTTAGGAATT+GGG + chr7_4:54303837-54303856 Msa1163230:intron 30.0%
GGAATTGGGATATAGAATAT+AGG + chr7_4:54303851-54303870 Msa1163230:intron 30.0%
TTCTTTAAATAGTCCTCAGT+TGG + chr7_4:54303961-54303980 Msa1163230:intron 30.0%
ATTCTTTCGTACACAAAGAA+AGG + chr7_4:54304005-54304024 Msa1163230:intron 30.0%
CTAAATGGTAATTGGATATG+CGG + chr7_4:54304175-54304194 Msa1163230:intron 30.0%
TTATTGTAATGCATTTGTGG+TGG + chr7_4:54304216-54304235 Msa1163230:intron 30.0%
! CAAGAAGATTCTGAATCTTT+TGG - chr7_4:54304368-54304387 None:intergenic 30.0%
CATATGTCATTCTTATTGTG+AGG + chr7_4:54304407-54304426 Msa1163230:intron 30.0%
! CAGACTAGTTAGTTAATTCT+TGG + chr7_4:54304450-54304469 Msa1163230:intron 30.0%
CTAAACAAAGGAAAACTACA+AGG - chr7_4:54304511-54304530 None:intergenic 30.0%
!! CTTGTAGTTTTCCTTTGTTT+AGG + chr7_4:54304509-54304528 Msa1163230:intron 30.0%
!! GTTTTCCTTTGTTTAGGTTT+CGG + chr7_4:54304515-54304534 Msa1163230:intron 30.0%
TACTGATGTTCAAGGTTAAA+TGG - chr7_4:54304579-54304598 None:intergenic 30.0%
! AAATTAGCTTGGAGATCATA+TGG + chr7_4:54305029-54305048 Msa1163230:three_prime_UTR 30.0%
AATGGGGTTAAAGAAATTGT+GGG - chr7_4:54302961-54302980 None:intergenic 30.0%
AAATGGGGTTAAAGAAATTG+TGG - chr7_4:54302962-54302981 None:intergenic 30.0%
ATTCAAGAGATAGGTTATTG+AGG - chr7_4:54303106-54303125 None:intergenic 30.0%
TCTTGAATACGAATCTGTTT+GGG + chr7_4:54303118-54303137 Msa1163230:CDS 30.0%
AAAAACAAACTGTACCAAGA+AGG - chr7_4:54303152-54303171 None:intergenic 30.0%
!! GTATTTGTCATGCTTTGTTT+AGG + chr7_4:54303211-54303230 Msa1163230:intron 30.0%
GTTGAAAATTAACCAGCTAA+TGG - chr7_4:54303280-54303299 None:intergenic 30.0%
AGTACTTTATGCGCTTAATT+TGG + chr7_4:54303462-54303481 Msa1163230:intron 30.0%
AAGTACTCTTAGGTCTAAAA+AGG - chr7_4:54303521-54303540 None:intergenic 30.0%
!!! TTTTTAGACCTAAGAGTACT+TGG + chr7_4:54303520-54303539 Msa1163230:intron 30.0%
!! AGAGGTGTTAAATCTCTTAA+GGG + chr7_4:54303608-54303627 Msa1163230:intron 30.0%
TACTCACTTATCAGCAATAT+GGG - chr7_4:54303769-54303788 None:intergenic 30.0%
TAGAGTCTTTGTTAGGAATT+GGG + chr7_4:54303837-54303856 Msa1163230:intron 30.0%
GGAATTGGGATATAGAATAT+AGG + chr7_4:54303851-54303870 Msa1163230:intron 30.0%
TTCTTTAAATAGTCCTCAGT+TGG + chr7_4:54303961-54303980 Msa1163230:intron 30.0%
ATTCTTTCGTACACAAAGAA+AGG + chr7_4:54304005-54304024 Msa1163230:intron 30.0%
CTAAATGGTAATTGGATATG+CGG + chr7_4:54304175-54304194 Msa1163230:intron 30.0%
TTATTGTAATGCATTTGTGG+TGG + chr7_4:54304216-54304235 Msa1163230:intron 30.0%
! CAAGAAGATTCTGAATCTTT+TGG - chr7_4:54304368-54304387 None:intergenic 30.0%
CATATGTCATTCTTATTGTG+AGG + chr7_4:54304407-54304426 Msa1163230:intron 30.0%
! CAGACTAGTTAGTTAATTCT+TGG + chr7_4:54304450-54304469 Msa1163230:intron 30.0%
CTAAACAAAGGAAAACTACA+AGG - chr7_4:54304511-54304530 None:intergenic 30.0%
!! CTTGTAGTTTTCCTTTGTTT+AGG + chr7_4:54304509-54304528 Msa1163230:intron 30.0%
!! GTTTTCCTTTGTTTAGGTTT+CGG + chr7_4:54304515-54304534 Msa1163230:intron 30.0%
TACTGATGTTCAAGGTTAAA+TGG - chr7_4:54304579-54304598 None:intergenic 30.0%
! AAATTAGCTTGGAGATCATA+TGG + chr7_4:54305029-54305048 Msa1163230:three_prime_UTR 30.0%
CAGATTCGTATTCAAGAGAT+AGG - chr7_4:54303115-54303134 None:intergenic 35.0%
CTCTTGAATACGAATCTGTT+TGG + chr7_4:54303117-54303136 Msa1163230:CDS 35.0%
TATCTTTACTCATATTCGCG+TGG + chr7_4:54303322-54303341 Msa1163230:CDS 35.0%
!! CAGAGGTGTTAAATCTCTTA+AGG + chr7_4:54303607-54303626 Msa1163230:intron 35.0%
CTACTCACTTATCAGCAATA+TGG - chr7_4:54303770-54303789 None:intergenic 35.0%
TAGAGTGTAGAGTCTTTGTT+AGG + chr7_4:54303830-54303849 Msa1163230:intron 35.0%
GTAGAGTCTTTGTTAGGAAT+TGG + chr7_4:54303836-54303855 Msa1163230:intron 35.0%
!! TAGTTGATAAGTTTGTTCGG+TGG + chr7_4:54303913-54303932 Msa1163230:intron 35.0%
TTCATCTTCACCCAATCTAA+AGG - chr7_4:54304091-54304110 None:intergenic 35.0%
TTTGTGGCCTAAATGGTAAT+TGG + chr7_4:54304167-54304186 Msa1163230:intron 35.0%
CGCATATCCAATTACCATTT+AGG - chr7_4:54304177-54304196 None:intergenic 35.0%
GATTTGTGTAGATTCAGAAG+TGG + chr7_4:54304295-54304314 Msa1163230:intron 35.0%
AGTTTGACCAATTGTGTCTA+CGG - chr7_4:54304639-54304658 None:intergenic 35.0%
TTAACCTACACTCGTATTAC+TGG - chr7_4:54304709-54304728 None:intergenic 35.0%
CATGCAATCAAAAAACACTG+CGG + chr7_4:54305118-54305137 Msa1163230:three_prime_UTR 35.0%
CAGATTCGTATTCAAGAGAT+AGG - chr7_4:54303115-54303134 None:intergenic 35.0%
CTCTTGAATACGAATCTGTT+TGG + chr7_4:54303117-54303136 Msa1163230:CDS 35.0%
TATCTTTACTCATATTCGCG+TGG + chr7_4:54303322-54303341 Msa1163230:CDS 35.0%
!! CAGAGGTGTTAAATCTCTTA+AGG + chr7_4:54303607-54303626 Msa1163230:intron 35.0%
CTACTCACTTATCAGCAATA+TGG - chr7_4:54303770-54303789 None:intergenic 35.0%
TAGAGTGTAGAGTCTTTGTT+AGG + chr7_4:54303830-54303849 Msa1163230:intron 35.0%
GTAGAGTCTTTGTTAGGAAT+TGG + chr7_4:54303836-54303855 Msa1163230:intron 35.0%
!! TAGTTGATAAGTTTGTTCGG+TGG + chr7_4:54303913-54303932 Msa1163230:intron 35.0%
TTCATCTTCACCCAATCTAA+AGG - chr7_4:54304091-54304110 None:intergenic 35.0%
TTTGTGGCCTAAATGGTAAT+TGG + chr7_4:54304167-54304186 Msa1163230:intron 35.0%
CGCATATCCAATTACCATTT+AGG - chr7_4:54304177-54304196 None:intergenic 35.0%
GATTTGTGTAGATTCAGAAG+TGG + chr7_4:54304295-54304314 Msa1163230:intron 35.0%
AGTTTGACCAATTGTGTCTA+CGG - chr7_4:54304639-54304658 None:intergenic 35.0%
TTAACCTACACTCGTATTAC+TGG - chr7_4:54304709-54304728 None:intergenic 35.0%
CATGCAATCAAAAAACACTG+CGG + chr7_4:54305118-54305137 Msa1163230:three_prime_UTR 35.0%
!! AAATTGGGAGTACCAAGAGA+GGG - chr7_4:54302881-54302900 None:intergenic 40.0%
TGAGAGTGAGTTGTTAGAGT+TGG - chr7_4:54302936-54302955 None:intergenic 40.0%
GGGATTGATACCAAAGAGTA+TGG - chr7_4:54303012-54303031 None:intergenic 40.0%
! TTGTTTTCGTCCAAGAAGAG+AGG - chr7_4:54303056-54303075 None:intergenic 40.0%
CAAACTGTACCAAGAAGGTT+TGG - chr7_4:54303147-54303166 None:intergenic 40.0%
! CTTTGTTTAGGTGTCAACCA+TGG + chr7_4:54303223-54303242 Msa1163230:intron 40.0%
CATGGACAATTACGCTAACT+GGG + chr7_4:54303241-54303260 Msa1163230:CDS 40.0%
ATGGACAATTACGCTAACTG+GGG + chr7_4:54303242-54303261 Msa1163230:CDS 40.0%
GAAGATATCACACGAACCTT+AGG - chr7_4:54303372-54303391 None:intergenic 40.0%
CATCTCATCCAAGTACTCTT+AGG - chr7_4:54303531-54303550 None:intergenic 40.0%
!! CTAAGAGTACTTGGATGAGA+TGG + chr7_4:54303529-54303548 Msa1163230:intron 40.0%
AGTACTTGGATGAGATGGTA+AGG + chr7_4:54303534-54303553 Msa1163230:intron 40.0%
GTACTTGGATGAGATGGTAA+GGG + chr7_4:54303535-54303554 Msa1163230:intron 40.0%
GTCTTTGCAATTGCACACAA+AGG + chr7_4:54303675-54303694 Msa1163230:intron 40.0%
AATATGGGATCACACTCAAC+GGG - chr7_4:54303754-54303773 None:intergenic 40.0%
CAATATGGGATCACACTCAA+CGG - chr7_4:54303755-54303774 None:intergenic 40.0%
! TTGGCAGAGGGAAAAGTTTT+TGG + chr7_4:54303980-54303999 Msa1163230:intron 40.0%
!! GATCCTATTAGTCTTGCATG+TGG + chr7_4:54304027-54304046 Msa1163230:intron 40.0%
GAGTGCAAGTCTCTATTTGA+TGG + chr7_4:54304056-54304075 Msa1163230:intron 40.0%
GAATTCCCCACCTTTAGATT+GGG + chr7_4:54304078-54304097 Msa1163230:intron 40.0%
TCTTCACCCAATCTAAAGGT+GGG - chr7_4:54304087-54304106 None:intergenic 40.0%
ATCTTCACCCAATCTAAAGG+TGG - chr7_4:54304088-54304107 None:intergenic 40.0%
!! GGATTGATTTGTGGCCTAAA+TGG + chr7_4:54304160-54304179 Msa1163230:intron 40.0%
GATTCAGAATCTTCTTGCGA+TGG + chr7_4:54304371-54304390 Msa1163230:intron 40.0%
GAATCTTCTTGCGATGGATA+AGG + chr7_4:54304377-54304396 Msa1163230:intron 40.0%
AACACCAGTAATACGAGTGT+AGG + chr7_4:54304702-54304721 Msa1163230:intron 40.0%
! TTGAAGACACTTTTGGTCGT+AGG + chr7_4:54304876-54304895 Msa1163230:CDS 40.0%
CAACAGAACAGTAGCTGTTA+AGG + chr7_4:54304984-54305003 Msa1163230:three_prime_UTR 40.0%
!! AAATTGGGAGTACCAAGAGA+GGG - chr7_4:54302881-54302900 None:intergenic 40.0%
TGAGAGTGAGTTGTTAGAGT+TGG - chr7_4:54302936-54302955 None:intergenic 40.0%
GGGATTGATACCAAAGAGTA+TGG - chr7_4:54303012-54303031 None:intergenic 40.0%
! TTGTTTTCGTCCAAGAAGAG+AGG - chr7_4:54303056-54303075 None:intergenic 40.0%
CAAACTGTACCAAGAAGGTT+TGG - chr7_4:54303147-54303166 None:intergenic 40.0%
! CTTTGTTTAGGTGTCAACCA+TGG + chr7_4:54303223-54303242 Msa1163230:intron 40.0%
CATGGACAATTACGCTAACT+GGG + chr7_4:54303241-54303260 Msa1163230:CDS 40.0%
ATGGACAATTACGCTAACTG+GGG + chr7_4:54303242-54303261 Msa1163230:CDS 40.0%
GAAGATATCACACGAACCTT+AGG - chr7_4:54303372-54303391 None:intergenic 40.0%
CATCTCATCCAAGTACTCTT+AGG - chr7_4:54303531-54303550 None:intergenic 40.0%
!! CTAAGAGTACTTGGATGAGA+TGG + chr7_4:54303529-54303548 Msa1163230:intron 40.0%
AGTACTTGGATGAGATGGTA+AGG + chr7_4:54303534-54303553 Msa1163230:intron 40.0%
GTACTTGGATGAGATGGTAA+GGG + chr7_4:54303535-54303554 Msa1163230:intron 40.0%
GTCTTTGCAATTGCACACAA+AGG + chr7_4:54303675-54303694 Msa1163230:intron 40.0%
AATATGGGATCACACTCAAC+GGG - chr7_4:54303754-54303773 None:intergenic 40.0%
CAATATGGGATCACACTCAA+CGG - chr7_4:54303755-54303774 None:intergenic 40.0%
! TTGGCAGAGGGAAAAGTTTT+TGG + chr7_4:54303980-54303999 Msa1163230:intron 40.0%
!! GATCCTATTAGTCTTGCATG+TGG + chr7_4:54304027-54304046 Msa1163230:intron 40.0%
GAGTGCAAGTCTCTATTTGA+TGG + chr7_4:54304056-54304075 Msa1163230:intron 40.0%
GAATTCCCCACCTTTAGATT+GGG + chr7_4:54304078-54304097 Msa1163230:intron 40.0%
TCTTCACCCAATCTAAAGGT+GGG - chr7_4:54304087-54304106 None:intergenic 40.0%
ATCTTCACCCAATCTAAAGG+TGG - chr7_4:54304088-54304107 None:intergenic 40.0%
!! GGATTGATTTGTGGCCTAAA+TGG + chr7_4:54304160-54304179 Msa1163230:intron 40.0%
GATTCAGAATCTTCTTGCGA+TGG + chr7_4:54304371-54304390 Msa1163230:intron 40.0%
GAATCTTCTTGCGATGGATA+AGG + chr7_4:54304377-54304396 Msa1163230:intron 40.0%
AACACCAGTAATACGAGTGT+AGG + chr7_4:54304702-54304721 Msa1163230:intron 40.0%
! TTGAAGACACTTTTGGTCGT+AGG + chr7_4:54304876-54304895 Msa1163230:CDS 40.0%
CAACAGAACAGTAGCTGTTA+AGG + chr7_4:54304984-54305003 Msa1163230:three_prime_UTR 40.0%
GTGACCAGTTAACATGACGA+CGG + chr7_4:54302854-54302873 Msa1163230:exon 45.0%
!! GAAATTGGGAGTACCAAGAG+AGG - chr7_4:54302882-54302901 None:intergenic 45.0%
TGTTAGAGTTGGAGGAGAAG+AGG - chr7_4:54302925-54302944 None:intergenic 45.0%
GAGTGAGTTGTTAGAGTTGG+AGG - chr7_4:54302933-54302952 None:intergenic 45.0%
!! TTGTCTGGTCTTGAGTCACT+GGG - chr7_4:54303032-54303051 None:intergenic 45.0%
!! ATTGTCTGGTCTTGAGTCAC+TGG - chr7_4:54303033-54303052 None:intergenic 45.0%
ACCAGACAATCCTCTCTTCT+TGG + chr7_4:54303043-54303062 Msa1163230:CDS 45.0%
TCCAAGAAGAGAGGATTGTC+TGG - chr7_4:54303047-54303066 None:intergenic 45.0%
CTTGGACGAAAACAATGCTG+TGG + chr7_4:54303061-54303080 Msa1163230:CDS 45.0%
! TTTGGGACACCAAACCTTCT+TGG + chr7_4:54303135-54303154 Msa1163230:CDS 45.0%
CCAGTTAGCGTAATTGTCCA+TGG - chr7_4:54303243-54303262 None:intergenic 45.0%
CCATGGACAATTACGCTAAC+TGG + chr7_4:54303240-54303259 Msa1163230:CDS 45.0%
CTTTACTCATATTCGCGTGG+TGG + chr7_4:54303325-54303344 Msa1163230:CDS 45.0%
ATCTCTTCCAGCTTAACCAG+AGG + chr7_4:54303558-54303577 Msa1163230:intron 45.0%
! GTTTTCAAACCCTGAACCTC+TGG - chr7_4:54303577-54303596 None:intergenic 45.0%
AGGGTTTGAAAACCCTGAGA+AGG + chr7_4:54303584-54303603 Msa1163230:intron 45.0%
TTAACACCTCTGCCTTCTCA+GGG - chr7_4:54303599-54303618 None:intergenic 45.0%
TTTAACACCTCTGCCTTCTC+AGG - chr7_4:54303600-54303619 None:intergenic 45.0%
GACATCTTTGCCACCAATTG+CGG + chr7_4:54303630-54303649 Msa1163230:intron 45.0%
AAAGACTAATCCTTCGAGCC+AGG - chr7_4:54303661-54303680 None:intergenic 45.0%
! CGAGTGTAGTAGGTGTTATC+TGG + chr7_4:54303795-54303814 Msa1163230:intron 45.0%
AAATAGTCCTCAGTTGGCAG+AGG + chr7_4:54303967-54303986 Msa1163230:intron 45.0%
AATAGTCCTCAGTTGGCAGA+GGG + chr7_4:54303968-54303987 Msa1163230:intron 45.0%
GAGCCACATGCAAGACTAAT+AGG - chr7_4:54304033-54304052 None:intergenic 45.0%
GGAATTCCCCACCTTTAGAT+TGG + chr7_4:54304077-54304096 Msa1163230:intron 45.0%
CTTCACCCAATCTAAAGGTG+GGG - chr7_4:54304086-54304105 None:intergenic 45.0%
TGGGTGAAGATGAACACAGA+TGG + chr7_4:54304097-54304116 Msa1163230:intron 45.0%
TGGTGGAGTAGCGTCTTTAA+AGG + chr7_4:54304233-54304252 Msa1163230:intron 45.0%
GTGGTTGTGAGAAGTTTGAG+TGG + chr7_4:54304314-54304333 Msa1163230:intron 45.0%
GTTGTGAGAAGTTTGAGTGG+TGG + chr7_4:54304317-54304336 Msa1163230:intron 45.0%
!! AAGCGCCGAAACCTAAACAA+AGG - chr7_4:54304523-54304542 None:intergenic 45.0%
TAAAAACTACCACAGCCACC+TGG + chr7_4:54304604-54304623 Msa1163230:intron 45.0%
ATTCCGACCGTAGACACAAT+TGG + chr7_4:54304629-54304648 Msa1163230:intron 45.0%
TGACCAATTGTGTCTACGGT+CGG - chr7_4:54304635-54304654 None:intergenic 45.0%
CGCAGAGAAAAGGTTACAGA+CGG + chr7_4:54304851-54304870 Msa1163230:CDS 45.0%
GATGAGCACAAGTGAAGAGT+GGG - chr7_4:54304925-54304944 None:intergenic 45.0%
AGATGAGCACAAGTGAAGAG+TGG - chr7_4:54304926-54304945 None:intergenic 45.0%
GTGACCAGTTAACATGACGA+CGG + chr7_4:54302854-54302873 Msa1163230:exon 45.0%
!! GAAATTGGGAGTACCAAGAG+AGG - chr7_4:54302882-54302901 None:intergenic 45.0%
TGTTAGAGTTGGAGGAGAAG+AGG - chr7_4:54302925-54302944 None:intergenic 45.0%
GAGTGAGTTGTTAGAGTTGG+AGG - chr7_4:54302933-54302952 None:intergenic 45.0%
!! TTGTCTGGTCTTGAGTCACT+GGG - chr7_4:54303032-54303051 None:intergenic 45.0%
!! ATTGTCTGGTCTTGAGTCAC+TGG - chr7_4:54303033-54303052 None:intergenic 45.0%
ACCAGACAATCCTCTCTTCT+TGG + chr7_4:54303043-54303062 Msa1163230:CDS 45.0%
TCCAAGAAGAGAGGATTGTC+TGG - chr7_4:54303047-54303066 None:intergenic 45.0%
CTTGGACGAAAACAATGCTG+TGG + chr7_4:54303061-54303080 Msa1163230:CDS 45.0%
! TTTGGGACACCAAACCTTCT+TGG + chr7_4:54303135-54303154 Msa1163230:CDS 45.0%
CCAGTTAGCGTAATTGTCCA+TGG - chr7_4:54303243-54303262 None:intergenic 45.0%
CCATGGACAATTACGCTAAC+TGG + chr7_4:54303240-54303259 Msa1163230:CDS 45.0%
CTTTACTCATATTCGCGTGG+TGG + chr7_4:54303325-54303344 Msa1163230:CDS 45.0%
ATCTCTTCCAGCTTAACCAG+AGG + chr7_4:54303558-54303577 Msa1163230:intron 45.0%
! GTTTTCAAACCCTGAACCTC+TGG - chr7_4:54303577-54303596 None:intergenic 45.0%
AGGGTTTGAAAACCCTGAGA+AGG + chr7_4:54303584-54303603 Msa1163230:intron 45.0%
TTAACACCTCTGCCTTCTCA+GGG - chr7_4:54303599-54303618 None:intergenic 45.0%
TTTAACACCTCTGCCTTCTC+AGG - chr7_4:54303600-54303619 None:intergenic 45.0%
GACATCTTTGCCACCAATTG+CGG + chr7_4:54303630-54303649 Msa1163230:intron 45.0%
AAAGACTAATCCTTCGAGCC+AGG - chr7_4:54303661-54303680 None:intergenic 45.0%
! CGAGTGTAGTAGGTGTTATC+TGG + chr7_4:54303795-54303814 Msa1163230:intron 45.0%
AAATAGTCCTCAGTTGGCAG+AGG + chr7_4:54303967-54303986 Msa1163230:intron 45.0%
AATAGTCCTCAGTTGGCAGA+GGG + chr7_4:54303968-54303987 Msa1163230:intron 45.0%
GAGCCACATGCAAGACTAAT+AGG - chr7_4:54304033-54304052 None:intergenic 45.0%
GGAATTCCCCACCTTTAGAT+TGG + chr7_4:54304077-54304096 Msa1163230:intron 45.0%
CTTCACCCAATCTAAAGGTG+GGG - chr7_4:54304086-54304105 None:intergenic 45.0%
TGGGTGAAGATGAACACAGA+TGG + chr7_4:54304097-54304116 Msa1163230:intron 45.0%
TGGTGGAGTAGCGTCTTTAA+AGG + chr7_4:54304233-54304252 Msa1163230:intron 45.0%
GTGGTTGTGAGAAGTTTGAG+TGG + chr7_4:54304314-54304333 Msa1163230:intron 45.0%
GTTGTGAGAAGTTTGAGTGG+TGG + chr7_4:54304317-54304336 Msa1163230:intron 45.0%
!! AAGCGCCGAAACCTAAACAA+AGG - chr7_4:54304523-54304542 None:intergenic 45.0%
TAAAAACTACCACAGCCACC+TGG + chr7_4:54304604-54304623 Msa1163230:intron 45.0%
ATTCCGACCGTAGACACAAT+TGG + chr7_4:54304629-54304648 Msa1163230:intron 45.0%
TGACCAATTGTGTCTACGGT+CGG - chr7_4:54304635-54304654 None:intergenic 45.0%
CGCAGAGAAAAGGTTACAGA+CGG + chr7_4:54304851-54304870 Msa1163230:CDS 45.0%
GATGAGCACAAGTGAAGAGT+GGG - chr7_4:54304925-54304944 None:intergenic 45.0%
AGATGAGCACAAGTGAAGAG+TGG - chr7_4:54304926-54304945 None:intergenic 45.0%
!!! TTTCAATTTTTTTTTTTTTT+TGG + chr7_4:54303175-54303194 Msa1163230:intron 5.0%
!!! TTTCAATTTTTTTTTTTTTT+TGG + chr7_4:54303175-54303194 Msa1163230:intron 5.0%
AGAGTTGGAGGAGAAGAGGA+AGG - chr7_4:54302921-54302940 None:intergenic 50.0%
CAATGCTGTGGTCGATGACA+TGG + chr7_4:54303073-54303092 Msa1163230:CDS 50.0%
TCCAGCTTAACCAGAGGTTC+AGG + chr7_4:54303564-54303583 Msa1163230:intron 50.0%
CCAGCTTAACCAGAGGTTCA+GGG + chr7_4:54303565-54303584 Msa1163230:intron 50.0%
TGAAAACCCTGAGAAGGCAG+AGG + chr7_4:54303590-54303609 Msa1163230:intron 50.0%
AGTAGACGCTCGAGTGTAGT+AGG + chr7_4:54303785-54303804 Msa1163230:intron 50.0%
! ACTTTTCCCTCTGCCAACTG+AGG - chr7_4:54303977-54303996 None:intergenic 50.0%
AGATGGTGCGAGTAGAGTAG+AGG + chr7_4:54304114-54304133 Msa1163230:intron 50.0%
!! GTCATGGGGGGATTGATTTG+TGG + chr7_4:54304151-54304170 Msa1163230:intron 50.0%
GATTGCTGAGCGCAGAGAAA+AGG + chr7_4:54304841-54304860 Msa1163230:CDS 50.0%
!! GACGGCGTTGAAGACACTTT+TGG + chr7_4:54304869-54304888 Msa1163230:CDS 50.0%
AGAGTTGGAGGAGAAGAGGA+AGG - chr7_4:54302921-54302940 None:intergenic 50.0%
CAATGCTGTGGTCGATGACA+TGG + chr7_4:54303073-54303092 Msa1163230:CDS 50.0%
TCCAGCTTAACCAGAGGTTC+AGG + chr7_4:54303564-54303583 Msa1163230:intron 50.0%
CCAGCTTAACCAGAGGTTCA+GGG + chr7_4:54303565-54303584 Msa1163230:intron 50.0%
TGAAAACCCTGAGAAGGCAG+AGG + chr7_4:54303590-54303609 Msa1163230:intron 50.0%
AGTAGACGCTCGAGTGTAGT+AGG + chr7_4:54303785-54303804 Msa1163230:intron 50.0%
! ACTTTTCCCTCTGCCAACTG+AGG - chr7_4:54303977-54303996 None:intergenic 50.0%
AGATGGTGCGAGTAGAGTAG+AGG + chr7_4:54304114-54304133 Msa1163230:intron 50.0%
!! GTCATGGGGGGATTGATTTG+TGG + chr7_4:54304151-54304170 Msa1163230:intron 50.0%
GATTGCTGAGCGCAGAGAAA+AGG + chr7_4:54304841-54304860 Msa1163230:CDS 50.0%
!! GACGGCGTTGAAGACACTTT+TGG + chr7_4:54304869-54304888 Msa1163230:CDS 50.0%
GGGACCGTCGTCATGTTAAC+TGG - chr7_4:54302861-54302880 None:intergenic 55.0%
GACGGTGGAGGAGGGAAATT+GGG - chr7_4:54302896-54302915 None:intergenic 55.0%
GAGGAGAAGAGGAAGGTCGA+CGG - chr7_4:54302914-54302933 None:intergenic 55.0%
GCTGTGGTCGATGACATGGA+CGG + chr7_4:54303077-54303096 Msa1163230:CDS 55.0%
CCCTGAACCTCTGGTTAAGC+TGG - chr7_4:54303568-54303587 None:intergenic 55.0%
CCAGGTATGACCGCAATTGG+TGG - chr7_4:54303643-54303662 None:intergenic 55.0%
CCACCAATTGCGGTCATACC+TGG + chr7_4:54303640-54303659 Msa1163230:intron 55.0%
GAGCCAGGTATGACCGCAAT+TGG - chr7_4:54303646-54303665 None:intergenic 55.0%
TGGTGCGAGTAGAGTAGAGG+TGG + chr7_4:54304117-54304136 Msa1163230:intron 55.0%
GGTGCGAGTAGAGTAGAGGT+GGG + chr7_4:54304118-54304137 Msa1163230:intron 55.0%
CGAGTAGAGTAGAGGTGGGT+TGG + chr7_4:54304122-54304141 Msa1163230:intron 55.0%
!! AGTAGAGGTGGGTTGGTGTC+TGG + chr7_4:54304129-54304148 Msa1163230:intron 55.0%
!! GTGGGTTGGTGTCTGGTCAT+GGG + chr7_4:54304136-54304155 Msa1163230:intron 55.0%
!! TGGGTTGGTGTCTGGTCATG+GGG + chr7_4:54304137-54304156 Msa1163230:intron 55.0%
! TGAGTGGTGGTGACGTTGTG+AGG + chr7_4:54304330-54304349 Msa1163230:intron 55.0%
! GAGTGGTGGTGACGTTGTGA+GGG + chr7_4:54304331-54304350 Msa1163230:intron 55.0%
TGTCTACGGTCGGAATAGCC+AGG - chr7_4:54304625-54304644 None:intergenic 55.0%
GGGACCGTCGTCATGTTAAC+TGG - chr7_4:54302861-54302880 None:intergenic 55.0%
GACGGTGGAGGAGGGAAATT+GGG - chr7_4:54302896-54302915 None:intergenic 55.0%
GAGGAGAAGAGGAAGGTCGA+CGG - chr7_4:54302914-54302933 None:intergenic 55.0%
GCTGTGGTCGATGACATGGA+CGG + chr7_4:54303077-54303096 Msa1163230:CDS 55.0%
CCCTGAACCTCTGGTTAAGC+TGG - chr7_4:54303568-54303587 None:intergenic 55.0%
CCAGGTATGACCGCAATTGG+TGG - chr7_4:54303643-54303662 None:intergenic 55.0%
CCACCAATTGCGGTCATACC+TGG + chr7_4:54303640-54303659 Msa1163230:intron 55.0%
GAGCCAGGTATGACCGCAAT+TGG - chr7_4:54303646-54303665 None:intergenic 55.0%
TGGTGCGAGTAGAGTAGAGG+TGG + chr7_4:54304117-54304136 Msa1163230:intron 55.0%
GGTGCGAGTAGAGTAGAGGT+GGG + chr7_4:54304118-54304137 Msa1163230:intron 55.0%
CGAGTAGAGTAGAGGTGGGT+TGG + chr7_4:54304122-54304141 Msa1163230:intron 55.0%
!! AGTAGAGGTGGGTTGGTGTC+TGG + chr7_4:54304129-54304148 Msa1163230:intron 55.0%
!! GTGGGTTGGTGTCTGGTCAT+GGG + chr7_4:54304136-54304155 Msa1163230:intron 55.0%
!! TGGGTTGGTGTCTGGTCATG+GGG + chr7_4:54304137-54304156 Msa1163230:intron 55.0%
! TGAGTGGTGGTGACGTTGTG+AGG + chr7_4:54304330-54304349 Msa1163230:intron 55.0%
! GAGTGGTGGTGACGTTGTGA+GGG + chr7_4:54304331-54304350 Msa1163230:intron 55.0%
TGTCTACGGTCGGAATAGCC+AGG - chr7_4:54304625-54304644 None:intergenic 55.0%
CATGACGACGGTCCCTCTCT+TGG + chr7_4:54302866-54302885 Msa1163230:exon 60.0%
CGACGGTGGAGGAGGGAAAT+TGG - chr7_4:54302897-54302916 None:intergenic 60.0%
AAGAGGAAGGTCGACGGTGG+AGG - chr7_4:54302908-54302927 None:intergenic 60.0%
GAGAAGAGGAAGGTCGACGG+TGG - chr7_4:54302911-54302930 None:intergenic 60.0%
! TGCGGTCATACCTGGCTCGA+AGG + chr7_4:54303648-54303667 Msa1163230:intron 60.0%
!! GGTGGGTTGGTGTCTGGTCA+TGG + chr7_4:54304135-54304154 Msa1163230:intron 60.0%
!! GGGTTGGTGTCTGGTCATGG+GGG + chr7_4:54304138-54304157 Msa1163230:intron 60.0%
! GGTTGGTGTCTGGTCATGGG+GGG + chr7_4:54304139-54304158 Msa1163230:intron 60.0%
! TGGTGGTGACGTTGTGAGGG+TGG + chr7_4:54304334-54304353 Msa1163230:intron 60.0%
TCGGAATAGCCAGGTGGCTG+TGG - chr7_4:54304616-54304635 None:intergenic 60.0%
CTACGGTCGGAATAGCCAGG+TGG - chr7_4:54304622-54304641 None:intergenic 60.0%
CATGACGACGGTCCCTCTCT+TGG + chr7_4:54302866-54302885 Msa1163230:exon 60.0%
CGACGGTGGAGGAGGGAAAT+TGG - chr7_4:54302897-54302916 None:intergenic 60.0%
AAGAGGAAGGTCGACGGTGG+AGG - chr7_4:54302908-54302927 None:intergenic 60.0%
GAGAAGAGGAAGGTCGACGG+TGG - chr7_4:54302911-54302930 None:intergenic 60.0%
! TGCGGTCATACCTGGCTCGA+AGG + chr7_4:54303648-54303667 Msa1163230:intron 60.0%
!! GGTGGGTTGGTGTCTGGTCA+TGG + chr7_4:54304135-54304154 Msa1163230:intron 60.0%
!! GGGTTGGTGTCTGGTCATGG+GGG + chr7_4:54304138-54304157 Msa1163230:intron 60.0%
! GGTTGGTGTCTGGTCATGGG+GGG + chr7_4:54304139-54304158 Msa1163230:intron 60.0%
! TGGTGGTGACGTTGTGAGGG+TGG + chr7_4:54304334-54304353 Msa1163230:intron 60.0%
TCGGAATAGCCAGGTGGCTG+TGG - chr7_4:54304616-54304635 None:intergenic 60.0%
CTACGGTCGGAATAGCCAGG+TGG - chr7_4:54304622-54304641 None:intergenic 60.0%
GGAAGGTCGACGGTGGAGGA+GGG - chr7_4:54302904-54302923 None:intergenic 65.0%
AGGAAGGTCGACGGTGGAGG+AGG - chr7_4:54302905-54302924 None:intergenic 65.0%
GGAAGGTCGACGGTGGAGGA+GGG - chr7_4:54302904-54302923 None:intergenic 65.0%
AGGAAGGTCGACGGTGGAGG+AGG - chr7_4:54302905-54302924 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 54302843 54305161 54302843 ID=Msa1163230;Name=Msa1163230
chr7_4 mRNA 54302843 54305161 54302843 ID=Msa1163230-mRNA-1;Parent=Msa1163230;Name=Msa1163230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=24|1|1|1|1|1|3|251|171
chr7_4 exon 54302843 54303156 54302843 ID=Msa1163230-mRNA-1:exon:15789;Parent=Msa1163230-mRNA-1
chr7_4 exon 54303233 54303374 54303233 ID=Msa1163230-mRNA-1:exon:15790;Parent=Msa1163230-mRNA-1
chr7_4 exon 54304827 54305161 54304827 ID=Msa1163230-mRNA-1:exon:15791;Parent=Msa1163230-mRNA-1
chr7_4 five_prime_UTR 54302843 54302866 54302843 ID=Msa1163230-mRNA-1:five_prime_utr;Parent=Msa1163230-mRNA-1
chr7_4 CDS 54302867 54303156 54302867 ID=Msa1163230-mRNA-1:cds;Parent=Msa1163230-mRNA-1
chr7_4 CDS 54303233 54303374 54303233 ID=Msa1163230-mRNA-1:cds;Parent=Msa1163230-mRNA-1
chr7_4 CDS 54304827 54304910 54304827 ID=Msa1163230-mRNA-1:cds;Parent=Msa1163230-mRNA-1
chr7_4 three_prime_UTR 54304911 54305161 54304911 ID=Msa1163230-mRNA-1:three_prime_utr;Parent=Msa1163230-mRNA-1
Gene Sequence

>Msa1163230

ATGACGACGGTCCCTCTCTTGGTACTCCCAATTTCCCTCCTCCACCGTCGACCTTCCTCTTCTCCTCCAACTCTAACAACTCACTCTCACACCCACAATTTCTTTAACCCCATTTTCTCTAATTCTTCAATCAACAAAAAATCCATACTCTTTGGTATCAATCCCAGTGACTCAAGACCAGACAATCCTCTCTTCTTGGACGAAAACAATGCTGTGGTCGATGACATGGACGGTTACCTCAATAACCTATCTCTTGAATACGAATCTGTTTGGGACACCAAACCTTCTTGGTGTCAACCATGGACAATTACGCTAACTGGGGTTTCAATAATTTCCATTAGCTGGTTAATTTTCAACTCTATCGCTGTAACTTCAGCTATATCTTTACTCATATTCGCGTGGTGGTACATCTTTCTATATTCTTATCCTAAGGCATATTCAGCGATGATTGCTGAGCGCAGAGAAAAGGTTACAGACGGCGTTGAAGACACTTTTGGTCGTAGGAAGAATCAGTAA

Protein sequence

>Msa1163230

MTTVPLLVLPISLLHRRPSSSPPTLTTHSHTHNFFNPIFSNSSINKKSILFGINPSDSRPDNPLFLDENNAVVDDMDGYLNNLSLEYESVWDTKPSWCQPWTITLTGVSIISISWLIFNSIAVTSAISLLIFAWWYIFLYSYPKAYSAMIAERREKVTDGVEDTFGRRKNQ*