AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250490 MtrunA17_Chr4g0054691 99.462 186 1 0 1 186 1 186 6.48e-140 387
Msa1250490 MtrunA17_Chr1g0210631 39.535 86 52 0 74 159 133 218 5.22e-18 78.2
Msa1250490 MtrunA17_Chr4g0026331 38.372 86 53 0 74 159 70 155 1.50e-17 75.5
Msa1250490 MtrunA17_Chr2g0277481 40.244 82 49 0 77 158 67 148 1.90e-17 75.1
Msa1250490 MtrunA17_Chr1g0210661 38.824 85 52 0 74 158 69 153 1.95e-17 75.5
Msa1250490 MtrunA17_Chr8g0380641 36.585 82 52 0 77 158 65 146 1.18e-16 73.2
Msa1250490 MtrunA17_Chr2g0321501 26.897 145 97 2 24 159 11 155 9.49e-16 70.9
Msa1250490 MtrunA17_Chr5g0394481 31.373 102 67 2 63 164 51 149 8.83e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250490 AT1G32550.1 67.760 183 53 3 6 186 3 181 1.83e-86 252
Msa1250490 AT1G32550.2 61.307 199 52 5 6 186 3 194 3.86e-79 234
Msa1250490 AT2G27510.1 40.244 82 49 0 78 159 74 155 3.48e-17 75.1
Msa1250490 AT1G10960.1 38.667 75 46 0 84 158 73 147 6.12e-15 68.9
Msa1250490 AT1G60950.1 30.702 114 67 2 54 158 37 147 2.84e-14 67.0

Find 73 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGCTTTGTATTAATAAA+TGG 0.188342 8_2:-46210817 None:intergenic
CCCTTGACTCACAGGTATAT+TGG 0.273197 8_2:+46216169 Msa1250490:intron
TTTGCATAGTATAGAAGATT+TGG 0.283845 8_2:+46216699 Msa1250490:three_prime_UTR
TAGAAGATTTGGCATGCTTT+TGG 0.287361 8_2:+46216710 Msa1250490:three_prime_UTR
CAGGTATATTGGCTTCAATT+TGG 0.291335 8_2:+46216180 Msa1250490:intron
TCTACTTCAAGATCAGAGTA+TGG 0.311983 8_2:-46213386 None:intergenic
TTGTTACAATGTGGTTCAAT+AGG 0.320510 8_2:+46216736 Msa1250490:three_prime_UTR
CTTATCCATTACTGTGCGTT+TGG 0.350556 8_2:-46216806 None:intergenic
TAACGGAAGCAAACGATTAC+CGG 0.393000 8_2:+46210911 Msa1250490:CDS
ATAATGTGAGAAAATGAAAA+TGG 0.394552 8_2:-46216512 None:intergenic
AATCGAACAACAACTACTAC+TGG 0.397418 8_2:-46210794 None:intergenic
CTGACACGCACATAACTTAC+GGG 0.425566 8_2:-46210714 None:intergenic
CAGCAGTATGCAATATATAT+TGG 0.427410 8_2:-46211127 None:intergenic
TCTGTCATTGATGTACCTTT+TGG 0.447476 8_2:+46216767 Msa1250490:three_prime_UTR
TCGTGTTCAGTGTTTGTGTT+TGG 0.462056 8_2:+46216561 Msa1250490:three_prime_UTR
TTACCCTTCCATTCGCCTGC+AGG 0.464055 8_2:+46211162 Msa1250490:CDS
TGCGCTGTTCGTATAAAGAA+TGG 0.468923 8_2:+46212433 Msa1250490:CDS
ACGTACCTGCTCTCTCAATT+CGG 0.472163 8_2:-46212491 None:intergenic
GCTGACACGCACATAACTTA+CGG 0.474547 8_2:-46210715 None:intergenic
CTTCCATTCGCCTGCAGGCA+TGG 0.476506 8_2:+46211167 Msa1250490:CDS
GTCGACGGTGGCAGCAGCGA+CGG 0.493828 8_2:+46210867 Msa1250490:CDS
CTATCGGTGCTACAGAGAAA+AGG 0.494887 8_2:-46216406 None:intergenic
CTGAACCAAACGCACAGTAA+TGG 0.497127 8_2:+46216801 Msa1250490:three_prime_UTR
TGGTGATGCTCCAACTCATA+AGG 0.497863 8_2:+46210942 Msa1250490:CDS
ATTAAACAGCCAGAGGCACT+TGG 0.500897 8_2:+46212460 Msa1250490:CDS
TTTGCTTCCGTTAGTCTCAC+CGG 0.515595 8_2:-46210901 None:intergenic
TACTACTGGGAATTCGAAGA+AGG 0.516293 8_2:-46210780 None:intergenic
CAAACGCACAGTAATGGATA+AGG 0.522361 8_2:+46216807 Msa1250490:three_prime_UTR
CTGCTGCCACCGTCGACTTG+CGG 0.523336 8_2:-46210861 None:intergenic
GCGCTGTTCGTATAAAGAAT+GGG 0.523958 8_2:+46212434 Msa1250490:CDS
AGATGATTACGCCTTGGAGT+TGG 0.525321 8_2:+46216330 Msa1250490:CDS
TGCCACCGTCGACTTGCGGA+GGG 0.528786 8_2:-46210857 None:intergenic
TTGGAAAAGAATCTAACGGT+TGG 0.533894 8_2:+46210672 Msa1250490:five_prime_UTR
TTACGCCTTGGAGTTGGCCA+TGG 0.537209 8_2:+46216336 Msa1250490:CDS
CTGCCACCGTCGACTTGCGG+AGG 0.539461 8_2:-46210858 None:intergenic
CATGCCTGCAGGCGAATGGA+AGG 0.545098 8_2:-46211166 None:intergenic
CTACTTCAAGATCAGAGTAT+GGG 0.545399 8_2:-46213385 None:intergenic
GAGCATCACCACTAGGATAC+CGG 0.547091 8_2:-46210930 None:intergenic
AAAGTAAGTACCATGCCTGC+AGG 0.550244 8_2:-46211177 None:intergenic
AAAGAAGTTAGAGTCCTTGG+AGG 0.553195 8_2:+46210618 Msa1250490:five_prime_UTR
TAATTCAAACCTCAGGTACA+AGG 0.558777 8_2:-46211005 None:intergenic
ATCTGCCGAATTGAGAGAGC+AGG 0.560872 8_2:+46212486 Msa1250490:CDS
GGAAAGAGATGATTACGCCT+TGG 0.577081 8_2:+46216324 Msa1250490:intron
ACGTCTTCAATATGAACTAT+CGG 0.579743 8_2:-46216422 None:intergenic
TCAGCATTGACTCAACCAAA+AGG 0.579919 8_2:-46216782 None:intergenic
GCCTGCTTACTCGTCACCCA+TGG 0.581117 8_2:-46216353 None:intergenic
TACGCCTTGGAGTTGGCCAT+GGG 0.581629 8_2:+46216337 Msa1250490:CDS
ATCGAACAACAACTACTACT+GGG 0.588470 8_2:-46210793 None:intergenic
GTCACCCATGGCCAACTCCA+AGG 0.593375 8_2:-46216341 None:intergenic
GCCATGGGTGACGAGTAAGC+AGG 0.593531 8_2:+46216352 Msa1250490:exon
ACTACTGGGAATTCGAAGAA+GGG 0.593926 8_2:-46210779 None:intergenic
TCACGAATTCCTTGTACCTG+AGG 0.597412 8_2:+46210996 Msa1250490:CDS
TAAAACCCTCCGCAAGTCGA+CGG 0.598675 8_2:+46210852 Msa1250490:CDS
AGAATACACATATAAACATG+AGG 0.606206 8_2:-46216641 None:intergenic
TTAAACAGCCAGAGGCACTT+GGG 0.610944 8_2:+46212461 Msa1250490:CDS
GTTTATATGTGTATTCTCTG+TGG 0.614176 8_2:+46216647 Msa1250490:three_prime_UTR
TCAAACACCGGTGAGACTAA+CGG 0.619410 8_2:+46210894 Msa1250490:CDS
TGAGTTGGAGCATCACCACT+AGG 0.621541 8_2:-46210937 None:intergenic
GCAATTGGAAAAGAATCTAA+CGG 0.626783 8_2:+46210668 Msa1250490:five_prime_UTR
AGAAACTCAAGATGAAGATG+AGG 0.630393 8_2:+46213406 Msa1250490:CDS
CTACTGGGAATTCGAAGAAG+GGG 0.636238 8_2:-46210778 None:intergenic
AACCCTCCGCAAGTCGACGG+TGG 0.642319 8_2:+46210855 Msa1250490:CDS
ATGCCTGCAGGCGAATGGAA+GGG 0.644285 8_2:-46211165 None:intergenic
GGTGCTACAGAGAAAAGGAA+AGG 0.645678 8_2:-46216401 None:intergenic
ACTTAGCTAAAGTCCTTGTG+AGG 0.648824 8_2:+46210591 Msa1250490:five_prime_UTR
CGATCGTCAAAACTCCTCCA+AGG 0.649062 8_2:-46210632 None:intergenic
AGCGACGGAGCTTCAAACAC+CGG 0.654626 8_2:+46210882 Msa1250490:CDS
GAATACACATATAAACATGA+GGG 0.663094 8_2:-46216640 None:intergenic
AACGATTACCGGTATCCTAG+TGG 0.663180 8_2:+46210922 Msa1250490:CDS
TGGGAAAATTAAACAGCCAG+AGG 0.663643 8_2:+46212453 Msa1250490:CDS
TATGAGTATCTGACACGTGT+TGG 0.664513 8_2:+46216446 Msa1250490:three_prime_UTR
TGAACTGTGACCTTATGAGT+TGG 0.666810 8_2:-46210952 None:intergenic
ACAGTTCACGATAGACAACG+AGG 0.785544 8_2:+46210967 Msa1250490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTCAATTTTCATT+AGG + chr8_2:46212068-46212087 Msa1250490:intron 10.0%
!! AAATTGAATCTATATATAAT+TGG - chr8_2:46212169-46212188 None:intergenic 10.0%
!! AAATAGAAATAAAATGAATA+AGG - chr8_2:46213664-46213683 None:intergenic 10.0%
!! ATTATGATTTATTCAAATTT+AGG + chr8_2:46215340-46215359 Msa1250490:intron 10.0%
!! CAATTCAATAAAATAGTTTA+AGG - chr8_2:46211445-46211464 None:intergenic 15.0%
!!! TATATTGATGTTTTATTCTT+TGG - chr8_2:46211846-46211865 None:intergenic 15.0%
!! TATGTTAAAAATATCAAACT+TGG - chr8_2:46212032-46212051 None:intergenic 15.0%
!! ATAAAAAAAGTTCATAAACA+TGG - chr8_2:46212521-46212540 None:intergenic 15.0%
!!! ATGAACTTTTTTTATTGAAT+CGG + chr8_2:46212526-46212545 Msa1250490:intron 15.0%
!! ATAACATGTATAAAGTATAA+TGG - chr8_2:46212718-46212737 None:intergenic 15.0%
!!! TAATCATAACTTTCATTTTA+TGG + chr8_2:46213444-46213463 Msa1250490:intron 15.0%
!! AAATATTCAAGAATATTCAA+AGG - chr8_2:46213572-46213591 None:intergenic 15.0%
!!! ATATTCTTGAATATTTTACA+CGG + chr8_2:46213576-46213595 Msa1250490:intron 15.0%
!! ATACTAAAACTAATTAAACA+TGG - chr8_2:46213692-46213711 None:intergenic 15.0%
!!! TTTTTGTAATTTCAAATAGA+AGG - chr8_2:46214456-46214475 None:intergenic 15.0%
!!! AAAATTAAGTTGTTAGAAAA+GGG - chr8_2:46214578-46214597 None:intergenic 15.0%
!!! AAAAATTAAGTTGTTAGAAA+AGG - chr8_2:46214579-46214598 None:intergenic 15.0%
!!! TCATTTTATAATTAGTGTTT+AGG - chr8_2:46214807-46214826 None:intergenic 15.0%
!! TTCAAATTTAGGAATTATTT+AGG + chr8_2:46215351-46215370 Msa1250490:intron 15.0%
!!! ATATAATTTGTGTGTTAAAA+AGG - chr8_2:46216301-46216320 None:intergenic 15.0%
!! AAGAAAAAAGAAGAAGAAAA+TGG + chr8_2:46210750-46210769 Msa1250490:exon 20.0%
!! CACATTAACATTGATATATA+CGG - chr8_2:46211084-46211103 None:intergenic 20.0%
!!! TTTTTTTGAAGAAGCTAAAT+TGG - chr8_2:46211597-46211616 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+GGG + chr8_2:46211899-46211918 Msa1250490:intron 20.0%
!!! TTCAATTTTCATTAGGTTAT+TGG + chr8_2:46212075-46212094 Msa1250490:intron 20.0%
!!! TTTTATGAACCTATCATATT+TGG + chr8_2:46212103-46212122 Msa1250490:intron 20.0%
!!! TTTCCATATGTAATTTGTAA+TGG + chr8_2:46212133-46212152 Msa1250490:intron 20.0%
!! TATATATAATTGGTAGGTAA+GGG - chr8_2:46212159-46212178 None:intergenic 20.0%
!! TGAATCTATATATAATTGGT+AGG - chr8_2:46212165-46212184 None:intergenic 20.0%
!!! TGCTTATTTGATACTTTTTA+TGG + chr8_2:46212393-46212412 Msa1250490:intron 20.0%
!!! TATTTGATACTTTTTATGGT+AGG + chr8_2:46212397-46212416 Msa1250490:intron 20.0%
!!! AGTATATACGTGTTTTTTTT+TGG + chr8_2:46212948-46212967 Msa1250490:intron 20.0%
!! AATATACAAACAATCATAAG+AGG - chr8_2:46213069-46213088 None:intergenic 20.0%
!!! TTACATTTTGATTTCTTTGT+TGG + chr8_2:46213089-46213108 Msa1250490:intron 20.0%
!!! TAAGCAAAAAACTACTTTTT+AGG - chr8_2:46214729-46214748 None:intergenic 20.0%
!! TGGATAAAATTATACTTATC+CGG + chr8_2:46215509-46215528 Msa1250490:intron 20.0%
!!! TCGTATTATTTTCATATGTT+GGG - chr8_2:46215788-46215807 None:intergenic 20.0%
!!! TCATATTATTTTCTTTCTTC+TGG + chr8_2:46215898-46215917 Msa1250490:intron 20.0%
!! ACTATTCTAATCAAATATTG+TGG + chr8_2:46215924-46215943 Msa1250490:intron 20.0%
!! TTAACACACAAATTATATAC+AGG + chr8_2:46216303-46216322 Msa1250490:intron 20.0%
!! ATAATGTGAGAAAATGAAAA+TGG - chr8_2:46216515-46216534 None:intergenic 20.0%
! CCTAATTCAATAGTTATATG+AGG - chr8_2:46211251-46211270 None:intergenic 25.0%
! CCTCATATAACTATTGAATT+AGG + chr8_2:46211248-46211267 Msa1250490:intron 25.0%
!! AAGGATTCTACTTCATTTTA+AGG - chr8_2:46211426-46211445 None:intergenic 25.0%
! TTGAATGAGTACAATAAAGA+AGG + chr8_2:46211643-46211662 Msa1250490:intron 25.0%
! TTATAAATAAGAGAAGACCA+AGG - chr8_2:46211750-46211769 None:intergenic 25.0%
!!! GATGGATTTTCATATACTTT+AGG + chr8_2:46211898-46211917 Msa1250490:intron 25.0%
!! TGGATTTTCATATACTTTAG+GGG + chr8_2:46211900-46211919 Msa1250490:intron 25.0%
! AACTAGTTATTATGGCTTAT+GGG + chr8_2:46211953-46211972 Msa1250490:intron 25.0%
! AAAAATATCAAACTTGGTAC+TGG - chr8_2:46212026-46212045 None:intergenic 25.0%
! AAAACAGAACCAAATATGAT+AGG - chr8_2:46212115-46212134 None:intergenic 25.0%
! CTATATATAATTGGTAGGTA+AGG - chr8_2:46212160-46212179 None:intergenic 25.0%
! CAAACATATATCAATCTAGA+GGG - chr8_2:46212339-46212358 None:intergenic 25.0%
! ATCAAATAAGCAACCAAATA+AGG - chr8_2:46212385-46212404 None:intergenic 25.0%
! TTTCAAGATTAGAATGAGAA+TGG - chr8_2:46212667-46212686 None:intergenic 25.0%
! TACATGTTATTATAGAGTAG+AGG + chr8_2:46212728-46212747 Msa1250490:intron 25.0%
! AATGTGAACATGTTTAGTAT+TGG - chr8_2:46212810-46212829 None:intergenic 25.0%
! AATAAAGTAAACTTGTAGAC+AGG - chr8_2:46212844-46212863 None:intergenic 25.0%
! GTTTACTTTATTCATTTGAC+AGG + chr8_2:46212852-46212871 Msa1250490:intron 25.0%
!!! CGCATTCATATTTTAATAAC+TGG - chr8_2:46212980-46212999 None:intergenic 25.0%
!! TTTGTTGGTGTTTCAATTTA+AGG + chr8_2:46213104-46213123 Msa1250490:intron 25.0%
!! TTGTTGGTGTTTCAATTTAA+GGG + chr8_2:46213105-46213124 Msa1250490:intron 25.0%
!! TAACTACTATAGTGGAAAAA+GGG - chr8_2:46213224-46213243 None:intergenic 25.0%
!! TTAACTACTATAGTGGAAAA+AGG - chr8_2:46213225-46213244 None:intergenic 25.0%
!! TTTTGTTCCATTTCATTTTC+AGG + chr8_2:46213337-46213356 Msa1250490:intron 25.0%
!! TTTGTTCCATTTCATTTTCA+GGG + chr8_2:46213338-46213357 Msa1250490:intron 25.0%
! AAAATATCTCACATTACTTC+TGG + chr8_2:46213542-46213561 Msa1250490:intron 25.0%
!! TTGTTGATTAGATGACTAAT+TGG - chr8_2:46213623-46213642 None:intergenic 25.0%
! ATATGACTTTCAAAAAGCAA+GGG - chr8_2:46213733-46213752 None:intergenic 25.0%
! AATATGACTTTCAAAAAGCA+AGG - chr8_2:46213734-46213753 None:intergenic 25.0%
! TGTCAATGCAAAACAAAAAT+AGG - chr8_2:46213820-46213839 None:intergenic 25.0%
!! TAATTTGGAGATCTTGTTTA+AGG + chr8_2:46213846-46213865 Msa1250490:intron 25.0%
!! AATTTGGAGATCTTGTTTAA+GGG + chr8_2:46213847-46213866 Msa1250490:intron 25.0%
!!! ATGTTGGTAGTAATCTTAAT+AGG + chr8_2:46213901-46213920 Msa1250490:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - chr8_2:46213966-46213985 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + chr8_2:46214001-46214020 Msa1250490:intron 25.0%
! ATAAGCTCTTGATTTATGTT+AGG + chr8_2:46214204-46214223 Msa1250490:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - chr8_2:46213966-46213985 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + chr8_2:46214001-46214020 Msa1250490:intron 25.0%
! ATTTCAAATAGAAGGAGTTT+AGG - chr8_2:46214448-46214467 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_2:46214739-46214758 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+TGG + chr8_2:46214739-46214758 Msa1250490:intron 25.0%
!! TAATTAGTGTTTAGGATAGT+GGG - chr8_2:46214799-46214818 None:intergenic 25.0%
!! ATAATTAGTGTTTAGGATAG+TGG - chr8_2:46214800-46214819 None:intergenic 25.0%
!! TATGATGCTTTTCTATTTGT+TGG + chr8_2:46214860-46214879 Msa1250490:intron 25.0%
!!! ATCAATACTCTAGTTTTCTT+TGG + chr8_2:46214902-46214921 Msa1250490:intron 25.0%
! GTTATCACTGAAATTATTGT+TGG - chr8_2:46215127-46215146 None:intergenic 25.0%
! TAAACATGGAAATCAAATCA+AGG - chr8_2:46215208-46215227 None:intergenic 25.0%
!!! TGAAAGATCATTACTGATTT+TGG + chr8_2:46215294-46215313 Msa1250490:intron 25.0%
! AGCTAAACAAGGAAATAATT+AGG - chr8_2:46215379-46215398 None:intergenic 25.0%
! GGATAAAATTATACTTATCC+GGG + chr8_2:46215510-46215529 Msa1250490:intron 25.0%
!! GTCGTATTATTTTCATATGT+TGG - chr8_2:46215789-46215808 None:intergenic 25.0%
! ATTGTGGTTGATTATTTAAC+CGG + chr8_2:46215940-46215959 Msa1250490:intron 25.0%
!!! TAAACTATGTTGTGTTTTTG+AGG + chr8_2:46216089-46216108 Msa1250490:intron 25.0%
!!! ACATGTTTTCTTTGATAATG+TGG + chr8_2:46216275-46216294 Msa1250490:intron 25.0%
! GAATACACATATAAACATGA+GGG - chr8_2:46216643-46216662 None:intergenic 25.0%
! AGAATACACATATAAACATG+AGG - chr8_2:46216644-46216663 None:intergenic 25.0%
! TTTGCATAGTATAGAAGATT+TGG + chr8_2:46216699-46216718 Msa1250490:three_prime_UTR 25.0%
!!! AACTTCTTTTTTTCCTCACA+AGG - chr8_2:46210607-46210626 None:intergenic 30.0%
AAAAAAGAAGTTAGAGTCCT+TGG + chr8_2:46210615-46210634 Msa1250490:five_prime_UTR 30.0%
GCAATTGGAAAAGAATCTAA+CGG + chr8_2:46210668-46210687 Msa1250490:five_prime_UTR 30.0%
!! CGTGGCTTTGTATTAATAAA+TGG - chr8_2:46210820-46210839 None:intergenic 30.0%
AGATGATTAATTCAAACCTC+AGG - chr8_2:46211015-46211034 None:intergenic 30.0%
CAGCAGTATGCAATATATAT+TGG - chr8_2:46211130-46211149 None:intergenic 30.0%
AGGCAGTAATTTGAAAAAGA+TGG + chr8_2:46211318-46211337 Msa1250490:intron 30.0%
TTGAAAAAGATGGAAGTGAT+TGG + chr8_2:46211328-46211347 Msa1250490:intron 30.0%
AATTAGAGAGAATCTAGAGA+AGG + chr8_2:46211669-46211688 Msa1250490:intron 30.0%
CAATATGGGAAATATGAATG+TGG - chr8_2:46211777-46211796 None:intergenic 30.0%
AATGAGTCAAAGAGCTTAAA+GGG - chr8_2:46211801-46211820 None:intergenic 30.0%
TAATGAGTCAAAGAGCTTAA+AGG - chr8_2:46211802-46211821 None:intergenic 30.0%
TTTGACTCATTATAGCTACA+TGG + chr8_2:46211810-46211829 Msa1250490:intron 30.0%
TCTCTGCTATTAAGATGTTA+GGG + chr8_2:46211867-46211886 Msa1250490:intron 30.0%
! GACAGATTTTCATATGCTTT+AGG + chr8_2:46211930-46211949 Msa1250490:intron 30.0%
!! GCTTTAGGAACTAGTTATTA+TGG + chr8_2:46211945-46211964 Msa1250490:intron 30.0%
GAACTAGTTATTATGGCTTA+TGG + chr8_2:46211952-46211971 Msa1250490:intron 30.0%
ATTGGAGGGAATAATAGTTT+AGG + chr8_2:46211980-46211999 Msa1250490:intron 30.0%
TTGGAGGGAATAATAGTTTA+GGG + chr8_2:46211981-46212000 Msa1250490:intron 30.0%
TAGTTTAGGGACTAAATTGA+TGG + chr8_2:46211994-46212013 Msa1250490:intron 30.0%
!! GATATTTTTAACATACCCGT+AGG + chr8_2:46212037-46212056 Msa1250490:intron 30.0%
AAAAAATATCCTCTCTCCTA+CGG - chr8_2:46212056-46212075 None:intergenic 30.0%
ATCCATGTATAGTTGAAGTA+CGG + chr8_2:46212190-46212209 Msa1250490:intron 30.0%
AAATTTATCTTCCCTCCTAT+TGG + chr8_2:46212235-46212254 Msa1250490:intron 30.0%
AATTTATCTTCCCTCCTATT+GGG + chr8_2:46212236-46212255 Msa1250490:intron 30.0%
TAGATCATGTAATGCATCAT+TGG + chr8_2:46212286-46212305 Msa1250490:intron 30.0%
CCAAACATATATCAATCTAG+AGG - chr8_2:46212340-46212359 None:intergenic 30.0%
CCTCTAGATTGATATATGTT+TGG + chr8_2:46212337-46212356 Msa1250490:intron 30.0%
!!! TTGGTTTTTTATGCTATTCC+TGG + chr8_2:46212356-46212375 Msa1250490:intron 30.0%
TTCTTTAGCATCATTGAAGA+TGG - chr8_2:46212625-46212644 None:intergenic 30.0%
ATGTTATTATAGAGTAGAGG+AGG + chr8_2:46212731-46212750 Msa1250490:intron 30.0%
CAGGAAATAAGACATTGAAT+TGG + chr8_2:46212871-46212890 Msa1250490:intron 30.0%
!! TCTACTCAAACTCATTTTTC+TGG + chr8_2:46213037-46213056 Msa1250490:intron 30.0%
CTTAACTACTTGTTTGTGTT+AGG - chr8_2:46213132-46213151 None:intergenic 30.0%
AATATCTTCGTTCTGTTGTA+GGG - chr8_2:46213161-46213180 None:intergenic 30.0%
AAATATCTTCGTTCTGTTGT+AGG - chr8_2:46213162-46213181 None:intergenic 30.0%
!! CGAAGATATTTTTCAGCTTA+TGG + chr8_2:46213171-46213190 Msa1250490:intron 30.0%
GTAGTTGTTAACTACTATAG+TGG - chr8_2:46213232-46213251 None:intergenic 30.0%
TATAGTAGTTAACAACTACG+AGG + chr8_2:46213233-46213252 Msa1250490:intron 30.0%
AACAGAGAAATAAGAGACAT+TGG - chr8_2:46213300-46213319 None:intergenic 30.0%
! AATGTCTCTTATTTCTCTGT+TGG + chr8_2:46213299-46213318 Msa1250490:intron 30.0%
! AGTAATGTGAGATATTTTGC+AGG - chr8_2:46213540-46213559 None:intergenic 30.0%
! GAATATTTTACACGGTCTTT+AGG + chr8_2:46213584-46213603 Msa1250490:intron 30.0%
CTAATCAACAAAGCAATCTT+AGG + chr8_2:46213632-46213651 Msa1250490:intron 30.0%
TTGAAAGTCATATTAGACTC+AGG + chr8_2:46213740-46213759 Msa1250490:intron 30.0%
TTCTATTAAATGTGTCCATC+CGG - chr8_2:46213781-46213800 None:intergenic 30.0%
! GCATTGACAAGACTTTAATT+TGG + chr8_2:46213831-46213850 Msa1250490:intron 30.0%
AGATTACTACCAACATCTAT+TGG - chr8_2:46213897-46213916 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + chr8_2:46214002-46214021 Msa1250490:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG - chr8_2:46214328-46214347 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + chr8_2:46214002-46214021 Msa1250490:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG + chr8_2:46214328-46214347 Msa1250490:intron 30.0%
! TGAGAGCATATTGAGAAAAA+AGG - chr8_2:46214978-46214997 None:intergenic 30.0%
! TCTTTGTTTGTATGCTATTG+TGG + chr8_2:46215025-46215044 Msa1250490:intron 30.0%
!!! TTGGTTTTGTAATGTTAGCA+TGG + chr8_2:46215048-46215067 Msa1250490:intron 30.0%
TTCCCACTAATGAATTGTAA+TGG + chr8_2:46215151-46215170 Msa1250490:intron 30.0%
CACCATTACAATTCATTAGT+GGG - chr8_2:46215156-46215175 None:intergenic 30.0%
TCACCATTACAATTCATTAG+TGG - chr8_2:46215157-46215176 None:intergenic 30.0%
AAGAGGAAAACTGATAAACA+TGG - chr8_2:46215222-46215241 None:intergenic 30.0%
ATTAGGAAGTTTCAAACAAG+AGG - chr8_2:46215239-46215258 None:intergenic 30.0%
TCAAGAAATTACACACAACA+AGG - chr8_2:46215277-46215296 None:intergenic 30.0%
!! ACTGATTTTGGTCAAATGAT+CGG + chr8_2:46215306-46215325 Msa1250490:intron 30.0%
GAAATTTCAGAGCAAGTTAA+AGG - chr8_2:46215858-46215877 None:intergenic 30.0%
ACGTCTTCAATATGAACTAT+CGG - chr8_2:46216425-46216444 None:intergenic 30.0%
GTTTATATGTGTATTCTCTG+TGG + chr8_2:46216647-46216666 Msa1250490:three_prime_UTR 30.0%
! TTTTGGATCTTGTTACAATG+TGG + chr8_2:46216727-46216746 Msa1250490:three_prime_UTR 30.0%
TTGTTACAATGTGGTTCAAT+AGG + chr8_2:46216736-46216755 Msa1250490:three_prime_UTR 30.0%
TTGGAAAAGAATCTAACGGT+TGG + chr8_2:46210672-46210691 Msa1250490:five_prime_UTR 35.0%
ATCGAACAACAACTACTACT+GGG - chr8_2:46210796-46210815 None:intergenic 35.0%
AATCGAACAACAACTACTAC+TGG - chr8_2:46210797-46210816 None:intergenic 35.0%
!!! GTTTTAGAAGGAAGATATCG+TGG - chr8_2:46210838-46210857 None:intergenic 35.0%
TAATTCAAACCTCAGGTACA+AGG - chr8_2:46211008-46211027 None:intergenic 35.0%
! TTTTCTACACATGCAACATC+TGG - chr8_2:46211053-46211072 None:intergenic 35.0%
TAAACGTGTTTGTGTCGTAT+TGG + chr8_2:46211357-46211376 Msa1250490:intron 35.0%
! ATTTCCATGCGTTATTTCCT+TGG + chr8_2:46211730-46211749 Msa1250490:intron 35.0%
ATGAGTCAAAGAGCTTAAAG+GGG - chr8_2:46211800-46211819 None:intergenic 35.0%
GTCTCTGCTATTAAGATGTT+AGG + chr8_2:46211866-46211885 Msa1250490:intron 35.0%
!! GATGTTAGGGATTAAGTTGA+TGG + chr8_2:46211880-46211899 Msa1250490:intron 35.0%
! TTATGGCTTATGGGCTAAAT+TGG + chr8_2:46211962-46211981 Msa1250490:intron 35.0%
AAAAATATCCTCTCTCCTAC+GGG - chr8_2:46212055-46212074 None:intergenic 35.0%
GGGCCATTACAAATTACATA+TGG - chr8_2:46212139-46212158 None:intergenic 35.0%
ATCCGTACTTCAACTATACA+TGG - chr8_2:46212195-46212214 None:intergenic 35.0%
ATGCATTACATGATCTACAC+AGG - chr8_2:46212283-46212302 None:intergenic 35.0%
CTATTCCTGGTTTCCTTATT+TGG + chr8_2:46212369-46212388 Msa1250490:intron 35.0%
CATCATTGAAGATGGTTGAT+GGG - chr8_2:46212617-46212636 None:intergenic 35.0%
CTTCAATGATGCTAAAGAAG+AGG + chr8_2:46212626-46212645 Msa1250490:intron 35.0%
!! AAAAGGGTGTTCATAGCAAA+TGG - chr8_2:46213208-46213227 None:intergenic 35.0%
GCATAACCCTGAAAATGAAA+TGG - chr8_2:46213347-46213366 None:intergenic 35.0%
CTACTTCAAGATCAGAGTAT+GGG - chr8_2:46213388-46213407 None:intergenic 35.0%
TCTACTTCAAGATCAGAGTA+TGG - chr8_2:46213389-46213408 None:intergenic 35.0%
AGAAACTCAAGATGAAGATG+AGG + chr8_2:46213406-46213425 Msa1250490:CDS 35.0%
CTGCTTAGTGATGATTTGAT+TGG - chr8_2:46213488-46213507 None:intergenic 35.0%
!! ACGGTCTTTAGGATATATAC+TGG + chr8_2:46213595-46213614 Msa1250490:intron 35.0%
CAAGGGTTTCAAAAGGAAAA+AGG - chr8_2:46213716-46213735 None:intergenic 35.0%
CAAAAAGCAAGGGTTTCAAA+AGG - chr8_2:46213723-46213742 None:intergenic 35.0%
ACATAAATCAAGAGCTAGTC+AGG - chr8_2:46213938-46213957 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + chr8_2:46214003-46214022 Msa1250490:intron 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG + chr8_2:46214036-46214055 Msa1250490:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG + chr8_2:46214044-46214063 Msa1250490:intron 35.0%
AAGGGAGAAAAGGAAATACA+AGG + chr8_2:46214054-46214073 Msa1250490:intron 35.0%
AGGGAGAAAAGGAAATACAA+GGG + chr8_2:46214055-46214074 Msa1250490:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG - chr8_2:46214044-46214063 None:intergenic 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG - chr8_2:46214036-46214055 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + chr8_2:46214003-46214022 Msa1250490:intron 35.0%
!! CATTTCTCAATAGGTTGGTT+GGG - chr8_2:46214405-46214424 None:intergenic 35.0%
!! TCATTTCTCAATAGGTTGGT+TGG - chr8_2:46214406-46214425 None:intergenic 35.0%
TGGAACAGCAGTTATGAAAT+GGG - chr8_2:46214502-46214521 None:intergenic 35.0%
CTAGCATAATTTCTCACGAT+GGG + chr8_2:46214549-46214568 Msa1250490:intron 35.0%
ATAATACACTATACTCCCTC+CGG + chr8_2:46214644-46214663 Msa1250490:intron 35.0%
TTGCTTATAAATGTGACTGG+AGG + chr8_2:46214742-46214761 Msa1250490:intron 35.0%
TGCTTATAAATGTGACTGGA+GGG + chr8_2:46214743-46214762 Msa1250490:intron 35.0%
!! AGAGTATTGATTGTCACAGT+TGG - chr8_2:46214893-46214912 None:intergenic 35.0%
TGTTTGTATGCTATTGTGGT+TGG + chr8_2:46215029-46215048 Msa1250490:intron 35.0%
! TAATGTTAGCATGGCATTGA+GGG + chr8_2:46215057-46215076 Msa1250490:intron 35.0%
! TAGAGAGCATAAGCTAAACA+AGG - chr8_2:46215390-46215409 None:intergenic 35.0%
TGCTCTCTAGATATCAGATT+TGG + chr8_2:46215401-46215420 Msa1250490:intron 35.0%
GCTCTCTAGATATCAGATTT+GGG + chr8_2:46215402-46215421 Msa1250490:intron 35.0%
TGCAGTTCGTACATCTAAAT+CGG + chr8_2:46215443-46215462 Msa1250490:intron 35.0%
AAGCTGTGTTTCTTTGTACT+CGG + chr8_2:46215561-46215580 Msa1250490:intron 35.0%
ATCCAGAATGAATGGTGTAA+AGG + chr8_2:46215617-46215636 Msa1250490:intron 35.0%
TCCAGAATGAATGGTGTAAA+GGG + chr8_2:46215618-46215637 Msa1250490:intron 35.0%
!!! CAGGTGTTTTTTGTGTCTTA+TGG - chr8_2:46215682-46215701 None:intergenic 35.0%
! AGTATGTTGTGTTCAAGTTC+AGG - chr8_2:46215701-46215720 None:intergenic 35.0%
ACACAACATACTGTCTATAG+AGG + chr8_2:46215709-46215728 Msa1250490:intron 35.0%
ATAGGTCCTAAAACAAACCA+TGG + chr8_2:46215753-46215772 Msa1250490:intron 35.0%
!!! CTTCATCCATGGTTTGTTTT+AGG - chr8_2:46215762-46215781 None:intergenic 35.0%
ACACTAACTCCTTATTGCAA+GGG + chr8_2:46215807-46215826 Msa1250490:intron 35.0%
! CCAACAAATGAACACTTTTC+CGG - chr8_2:46215962-46215981 None:intergenic 35.0%
CTTAGTAAGAGTCAACTTGA+GGG + chr8_2:46215992-46216011 Msa1250490:intron 35.0%
TTAGTAAGAGTCAACTTGAG+GGG + chr8_2:46215993-46216012 Msa1250490:intron 35.0%
!! CAGGTATATTGGCTTCAATT+TGG + chr8_2:46216180-46216199 Msa1250490:intron 35.0%
!! TTTGGACGTTATTTTGCAAG+AGG + chr8_2:46216198-46216217 Msa1250490:CDS 35.0%
TATATAACAGAACCTACCAC+TGG - chr8_2:46216225-46216244 None:intergenic 35.0%
! ATTCTCTGTGGTCTTTTTGT+TGG + chr8_2:46216659-46216678 Msa1250490:three_prime_UTR 35.0%
! TAGAAGATTTGGCATGCTTT+TGG + chr8_2:46216710-46216729 Msa1250490:three_prime_UTR 35.0%
! TCTGTCATTGATGTACCTTT+TGG + chr8_2:46216767-46216786 Msa1250490:three_prime_UTR 35.0%
ACTTAGCTAAAGTCCTTGTG+AGG + chr8_2:46210591-46210610 Msa1250490:five_prime_UTR 40.0%
AAAGAAGTTAGAGTCCTTGG+AGG + chr8_2:46210618-46210637 Msa1250490:five_prime_UTR 40.0%
ACTACTGGGAATTCGAAGAA+GGG - chr8_2:46210782-46210801 None:intergenic 40.0%
TACTACTGGGAATTCGAAGA+AGG - chr8_2:46210783-46210802 None:intergenic 40.0%
TAACGGAAGCAAACGATTAC+CGG + chr8_2:46210911-46210930 Msa1250490:CDS 40.0%
TGAACTGTGACCTTATGAGT+TGG - chr8_2:46210955-46210974 None:intergenic 40.0%
! GAGTACTGTTTGTGAAATGC+AGG + chr8_2:46211103-46211122 Msa1250490:intron 40.0%
TACCTAACACGATCATGACA+CGG + chr8_2:46211283-46211302 Msa1250490:intron 40.0%
TTGGTCTAGACACCAATAGA+TGG + chr8_2:46211376-46211395 Msa1250490:intron 40.0%
! ACACCAATAGATGGAAGTGT+CGG + chr8_2:46211385-46211404 Msa1250490:intron 40.0%
! ATTCTCACCGGTGTCAATTT+AGG + chr8_2:46211567-46211586 Msa1250490:intron 40.0%
! AATCTAGAGAAGGAGAGTAC+AGG + chr8_2:46211679-46211698 Msa1250490:intron 40.0%
AAGACCAAGGAAATAACGCA+TGG - chr8_2:46211737-46211756 None:intergenic 40.0%
AGAGCTTAAAGGGGCAATAT+GGG - chr8_2:46211791-46211810 None:intergenic 40.0%
AAGAGCTTAAAGGGGCAATA+TGG - chr8_2:46211792-46211811 None:intergenic 40.0%
AATCTAGAGGGAAACAGAAG+CGG - chr8_2:46212327-46212346 None:intergenic 40.0%
AGCAACCAAATAAGGAAACC+AGG - chr8_2:46212377-46212396 None:intergenic 40.0%
TGCGCTGTTCGTATAAAGAA+TGG + chr8_2:46212433-46212452 Msa1250490:CDS 40.0%
GCGCTGTTCGTATAAAGAAT+GGG + chr8_2:46212434-46212453 Msa1250490:CDS 40.0%
TGGGAAAATTAAACAGCCAG+AGG + chr8_2:46212453-46212472 Msa1250490:CDS 40.0%
GCATCATTGAAGATGGTTGA+TGG - chr8_2:46212618-46212637 None:intergenic 40.0%
! CCAACATCTATTGGTCTAAG+CGG - chr8_2:46213888-46213907 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG - chr8_2:46214157-46214176 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG + chr8_2:46214035-46214054 Msa1250490:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG + chr8_2:46214083-46214102 Msa1250490:intron 40.0%
TGTAACTGCTAGTAACCACT+AGG - chr8_2:46214101-46214120 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG - chr8_2:46214035-46214054 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG + chr8_2:46214157-46214176 Msa1250490:intron 40.0%
GAGGAATTATCATCCAACAG+TGG - chr8_2:46214173-46214192 None:intergenic 40.0%
! CAACAGTGGTTAGTTGCAAA+GGG + chr8_2:46214301-46214320 Msa1250490:intron 40.0%
GTTAGTTGCAAAGGGAGAAA+AGG + chr8_2:46214309-46214328 Msa1250490:intron 40.0%
TGTAACAGCTAGTAACCACT+AGG + chr8_2:46214359-46214378 Msa1250490:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG - chr8_2:46214083-46214102 None:intergenic 40.0%
TGGGTCATTTCTCAATAGGT+TGG - chr8_2:46214410-46214429 None:intergenic 40.0%
GGATTGGGTCATTTCTCAAT+AGG - chr8_2:46214414-46214433 None:intergenic 40.0%
! ATAGAAGGAGTTTAGGACAG+AGG - chr8_2:46214441-46214460 None:intergenic 40.0%
ACAGCAGTTATGAAATGGGA+CGG - chr8_2:46214498-46214517 None:intergenic 40.0%
CTGGAACAGCAGTTATGAAA+TGG - chr8_2:46214503-46214522 None:intergenic 40.0%
CATTTCATAACTGCTGTTCC+AGG + chr8_2:46214501-46214520 Msa1250490:intron 40.0%
CCATCGTGAGAAATTATGCT+AGG - chr8_2:46214551-46214570 None:intergenic 40.0%
CCTAGCATAATTTCTCACGA+TGG + chr8_2:46214548-46214567 Msa1250490:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_2:46214662-46214681 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_2:46214663-46214682 None:intergenic 40.0%
GTAATGTTAGCATGGCATTG+AGG + chr8_2:46215056-46215075 Msa1250490:intron 40.0%
! AATGTTAGCATGGCATTGAG+GGG + chr8_2:46215058-46215077 Msa1250490:intron 40.0%
TGGTGATTTGATGTTAGCTG+TGG + chr8_2:46215171-46215190 Msa1250490:intron 40.0%
! GGAGAGTTCACTAAAGCATT+AGG - chr8_2:46215256-46215275 None:intergenic 40.0%
TAACTCGTCAAGTATAGACC+CGG - chr8_2:46215531-46215550 None:intergenic 40.0%
CTCCTACTATCCAGAATGAA+TGG + chr8_2:46215609-46215628 Msa1250490:intron 40.0%
CACCATTCATTCTGGATAGT+AGG - chr8_2:46215614-46215633 None:intergenic 40.0%
TCCCTTTACACCATTCATTC+TGG - chr8_2:46215622-46215641 None:intergenic 40.0%
AATGAATGGTGTAAAGGGAG+AGG + chr8_2:46215623-46215642 Msa1250490:intron 40.0%
ATGAATGGTGTAAAGGGAGA+GGG + chr8_2:46215624-46215643 Msa1250490:intron 40.0%
TGTGTCTTATGGTACAGAAG+CGG - chr8_2:46215671-46215690 None:intergenic 40.0%
!! GAGGTCTTTGAGATTCCTTT+CGG + chr8_2:46215728-46215747 Msa1250490:intron 40.0%
!! AGGTCTTTGAGATTCCTTTC+GGG + chr8_2:46215729-46215748 Msa1250490:intron 40.0%
TTGAGATTCCTTTCGGGAAT+AGG + chr8_2:46215735-46215754 Msa1250490:intron 40.0%
!!! TTTTAGGACCTATTCCCGAA+AGG - chr8_2:46215746-46215765 None:intergenic 40.0%
ATGTTGGGTAACTTCATCCA+TGG - chr8_2:46215773-46215792 None:intergenic 40.0%
GACACTAACTCCTTATTGCA+AGG + chr8_2:46215806-46215825 Msa1250490:intron 40.0%
CACTGATATCCCTTGCAATA+AGG - chr8_2:46215819-46215838 None:intergenic 40.0%
!! CCGGAAAAGTGTTCATTTGT+TGG + chr8_2:46215959-46215978 Msa1250490:intron 40.0%
GCTTAGTAAGAGTCAACTTG+AGG + chr8_2:46215991-46216010 Msa1250490:intron 40.0%
CCAATATACCTGTGAGTCAA+GGG - chr8_2:46216172-46216191 None:intergenic 40.0%
!! TTATTTTGCAAGAGGACCAG+TGG + chr8_2:46216206-46216225 Msa1250490:CDS 40.0%
TATGAGTATCTGACACGTGT+TGG + chr8_2:46216446-46216465 Msa1250490:three_prime_UTR 40.0%
TCGTGTTCAGTGTTTGTGTT+TGG + chr8_2:46216561-46216580 Msa1250490:three_prime_UTR 40.0%
!! TCAGCATTGACTCAACCAAA+AGG - chr8_2:46216785-46216804 None:intergenic 40.0%
CTTATCCATTACTGTGCGTT+TGG - chr8_2:46216809-46216828 None:intergenic 40.0%
!! CAAACGCACAGTAATGGATA+AGG + chr8_2:46216807-46216826 Msa1250490:three_prime_UTR 40.0%
CTGACACGCACATAACTTAC+GGG - chr8_2:46210717-46210736 None:intergenic 45.0%
GCTGACACGCACATAACTTA+CGG - chr8_2:46210718-46210737 None:intergenic 45.0%
CTACTGGGAATTCGAAGAAG+GGG - chr8_2:46210781-46210800 None:intergenic 45.0%
TCAAACACCGGTGAGACTAA+CGG + chr8_2:46210894-46210913 Msa1250490:CDS 45.0%
! TTTGCTTCCGTTAGTCTCAC+CGG - chr8_2:46210904-46210923 None:intergenic 45.0%
AACGATTACCGGTATCCTAG+TGG + chr8_2:46210922-46210941 Msa1250490:CDS 45.0%
! TGGTGATGCTCCAACTCATA+AGG + chr8_2:46210942-46210961 Msa1250490:CDS 45.0%
ACAGTTCACGATAGACAACG+AGG + chr8_2:46210967-46210986 Msa1250490:CDS 45.0%
TCACGAATTCCTTGTACCTG+AGG + chr8_2:46210996-46211015 Msa1250490:CDS 45.0%
AAAGTAAGTACCATGCCTGC+AGG - chr8_2:46211180-46211199 None:intergenic 45.0%
TCACAGCTAATGAACCCACT+TGG + chr8_2:46211482-46211501 Msa1250490:intron 45.0%
CACAGCTAATGAACCCACTT+GGG + chr8_2:46211483-46211502 Msa1250490:intron 45.0%
! TCACCGGTGTCAATTTAGGT+GGG + chr8_2:46211571-46211590 Msa1250490:intron 45.0%
! TGGCTTATGGGCTAAATTGG+AGG + chr8_2:46211965-46211984 Msa1250490:intron 45.0%
! GGCTTATGGGCTAAATTGGA+GGG + chr8_2:46211966-46211985 Msa1250490:intron 45.0%
TTAACATACCCGTAGGAGAG+AGG + chr8_2:46212044-46212063 Msa1250490:intron 45.0%
TGATTGTCGACGTTCCCAAT+AGG - chr8_2:46212253-46212272 None:intergenic 45.0%
!! ATTAAACAGCCAGAGGCACT+TGG + chr8_2:46212460-46212479 Msa1250490:CDS 45.0%
!! TTAAACAGCCAGAGGCACTT+GGG + chr8_2:46212461-46212480 Msa1250490:CDS 45.0%
ACGTACCTGCTCTCTCAATT+CGG - chr8_2:46212494-46212513 None:intergenic 45.0%
AGTAGCAATGCATGATGCTC+TGG + chr8_2:46212565-46212584 Msa1250490:intron 45.0%
CAGGATAATCCAAGTCAAGC+CGG + chr8_2:46213759-46213778 Msa1250490:intron 45.0%
ATAATCCAAGTCAAGCCGGA+TGG + chr8_2:46213763-46213782 Msa1250490:intron 45.0%
CCGCTTAGACCAATAGATGT+TGG + chr8_2:46213885-46213904 Msa1250490:intron 45.0%
GGGGAATTATCATCCAACAG+TGG + chr8_2:46214022-46214041 Msa1250490:intron 45.0%
GAGCTTATTGAACAAACGCG+AGG - chr8_2:46214192-46214211 None:intergenic 45.0%
GGGGAATTATCATCCAACAG+TGG + chr8_2:46214022-46214041 Msa1250490:intron 45.0%
CCTTTGCAACTAACCACTGT+TGG - chr8_2:46214303-46214322 None:intergenic 45.0%
! CCAACAGTGGTTAGTTGCAA+AGG + chr8_2:46214300-46214319 Msa1250490:intron 45.0%
GCATAATTTCTCACGATGGG+AGG + chr8_2:46214552-46214571 Msa1250490:intron 45.0%
! TGATTGTCACAGTTGGTGCA+CGG - chr8_2:46214886-46214905 None:intergenic 45.0%
ATGAAGCGTACAACAACAGC+AGG - chr8_2:46214937-46214956 None:intergenic 45.0%
! ATGTTAGCATGGCATTGAGG+GGG + chr8_2:46215059-46215078 Msa1250490:intron 45.0%
!!! GCGGCTTAGTCTTTTTTCCT+TGG - chr8_2:46215652-46215671 None:intergenic 45.0%
GATGATGAGAAGATGCTCAG+AGG - chr8_2:46215880-46215899 None:intergenic 45.0%
TAAGAGTCAACTTGAGGGGA+TGG + chr8_2:46215997-46216016 Msa1250490:intron 45.0%
! ATTTGCTACCCTTGACTCAC+AGG + chr8_2:46216161-46216180 Msa1250490:intron 45.0%
CCCTTGACTCACAGGTATAT+TGG + chr8_2:46216169-46216188 Msa1250490:intron 45.0%
GCCAATATACCTGTGAGTCA+AGG - chr8_2:46216173-46216192 None:intergenic 45.0%
GGAAAGAGATGATTACGCCT+TGG + chr8_2:46216324-46216343 Msa1250490:intron 45.0%
AGATGATTACGCCTTGGAGT+TGG + chr8_2:46216330-46216349 Msa1250490:CDS 45.0%
! GGTGCTACAGAGAAAAGGAA+AGG - chr8_2:46216404-46216423 None:intergenic 45.0%
!! CTATCGGTGCTACAGAGAAA+AGG - chr8_2:46216409-46216428 None:intergenic 45.0%
CTGAACCAAACGCACAGTAA+TGG + chr8_2:46216801-46216820 Msa1250490:three_prime_UTR 45.0%
CGATCGTCAAAACTCCTCCA+AGG - chr8_2:46210635-46210654 None:intergenic 50.0%
CGTACGTGTCAAGCAGCAAT+TGG + chr8_2:46210653-46210672 Msa1250490:five_prime_UTR 50.0%
!!! GACTTGCGGAGGGTTTTAGA+AGG - chr8_2:46210850-46210869 None:intergenic 50.0%
TAAAACCCTCCGCAAGTCGA+CGG + chr8_2:46210852-46210871 Msa1250490:CDS 50.0%
GAGCATCACCACTAGGATAC+CGG - chr8_2:46210933-46210952 None:intergenic 50.0%
! TGAGTTGGAGCATCACCACT+AGG - chr8_2:46210940-46210959 None:intergenic 50.0%
GTCCGTGTCATGATCGTGTT+AGG - chr8_2:46211288-46211307 None:intergenic 50.0%
ACGATCATGACACGGACACA+TGG + chr8_2:46211291-46211310 Msa1250490:intron 50.0%
! GCACCGACACTTCCATCTAT+TGG - chr8_2:46211391-46211410 None:intergenic 50.0%
GCTAATGAACCCACTTGGGT+TGG + chr8_2:46211487-46211506 Msa1250490:intron 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_2:46211501-46211520 Msa1250490:intron 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_2:46211506-46211525 Msa1250490:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_2:46211507-46211526 Msa1250490:intron 50.0%
GTCTCAGGTTCGATTCTCAC+CGG + chr8_2:46211555-46211574 Msa1250490:intron 50.0%
! CTCACCGGTGTCAATTTAGG+TGG + chr8_2:46211570-46211589 Msa1250490:intron 50.0%
TGGCCCACCTAAATTGACAC+CGG - chr8_2:46211577-46211596 None:intergenic 50.0%
TGTCGACGTTCCCAATAGGA+GGG - chr8_2:46212249-46212268 None:intergenic 50.0%
TTGTCGACGTTCCCAATAGG+AGG - chr8_2:46212250-46212269 None:intergenic 50.0%
ATCTGCCGAATTGAGAGAGC+AGG + chr8_2:46212486-46212505 Msa1250490:CDS 50.0%
AGCAATGCATGATGCTCTGG+AGG + chr8_2:46212568-46212587 Msa1250490:intron 50.0%
TAGAGTAGAGGAGGACGAAG+TGG + chr8_2:46212740-46212759 Msa1250490:intron 50.0%
TAGGACAGAGGCAGAGGATT+GGG - chr8_2:46214429-46214448 None:intergenic 50.0%
TTAGGACAGAGGCAGAGGAT+TGG - chr8_2:46214430-46214449 None:intergenic 50.0%
GTACAACAACAGCAGGTGGA+AGG - chr8_2:46214930-46214949 None:intergenic 50.0%
AAGCGTACAACAACAGCAGG+TGG - chr8_2:46214934-46214953 None:intergenic 50.0%
ATCCACAACCCTCAAGCATG+AGG - chr8_2:46215494-46215513 None:intergenic 50.0%
TCGGCTCATATCCTCGTACT+CGG + chr8_2:46215580-46215599 Msa1250490:intron 50.0%
TGTAAAGGGAGAGGGAACCA+AGG + chr8_2:46215632-46215651 Msa1250490:intron 50.0%
TTTGCAAGAGGACCAGTGGT+AGG + chr8_2:46216210-46216229 Msa1250490:intron 50.0%
AGCGACGGAGCTTCAAACAC+CGG + chr8_2:46210882-46210901 Msa1250490:CDS 55.0%
TTACCCTTCCATTCGCCTGC+AGG + chr8_2:46211162-46211181 Msa1250490:CDS 55.0%
ATGCCTGCAGGCGAATGGAA+GGG - chr8_2:46211168-46211187 None:intergenic 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_2:46211499-46211518 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_2:46211500-46211519 None:intergenic 55.0%
GGTCCCAAGCCAATACCACT+AGG - chr8_2:46211513-46211532 None:intergenic 55.0%
!! AGTGGTATTGGCTTGGGACC+TGG + chr8_2:46211513-46211532 Msa1250490:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr8_2:46211514-46211533 Msa1250490:intron 55.0%
GAATCGAACCTGAGACCTCG+AGG - chr8_2:46211551-46211570 None:intergenic 55.0%
GCAGATATCCCAAGTGCCTC+TGG - chr8_2:46212472-46212491 None:intergenic 55.0%
AGTAGAGGAGGACGAAGTGG+TGG + chr8_2:46212743-46212762 Msa1250490:intron 55.0%
GGACGAAGTGGTGGTTGTAG+TGG + chr8_2:46212752-46212771 Msa1250490:intron 55.0%
! TGTGTCCATCCGGCTTGACT+TGG - chr8_2:46213771-46213790 None:intergenic 55.0%
! GGAGTTTAGGACAGAGGCAG+AGG - chr8_2:46214435-46214454 None:intergenic 55.0%
TCCAGGCCCTCTTGGACTAA+TGG + chr8_2:46214518-46214537 Msa1250490:intron 55.0%
ACCATTAGTCCAAGAGGGCC+TGG - chr8_2:46214522-46214541 None:intergenic 55.0%
ACGTGCAAGCCTCATGCTTG+AGG + chr8_2:46215482-46215501 Msa1250490:intron 55.0%
CGTGCAAGCCTCATGCTTGA+GGG + chr8_2:46215483-46215502 Msa1250490:intron 55.0%
AGCCTCATGCTTGAGGGTTG+TGG + chr8_2:46215489-46215508 Msa1250490:intron 55.0%
AGGAGAATGAGCCGAGTACG+AGG - chr8_2:46215594-46215613 None:intergenic 55.0%
TTACGCCTTGGAGTTGGCCA+TGG + chr8_2:46216336-46216355 Msa1250490:CDS 55.0%
TACGCCTTGGAGTTGGCCAT+GGG + chr8_2:46216337-46216356 Msa1250490:CDS 55.0%
CATGCCTGCAGGCGAATGGA+AGG - chr8_2:46211169-46211188 None:intergenic 60.0%
CTTCCATTCGCCTGCAGGCA+TGG + chr8_2:46211167-46211186 Msa1250490:CDS 60.0%
GTACCATGCCTGCAGGCGAA+TGG - chr8_2:46211173-46211192 None:intergenic 60.0%
TGACACGGACACATGGACGC+AGG + chr8_2:46211298-46211317 Msa1250490:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_2:46211495-46211514 Msa1250490:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG - chr8_2:46211548-46211567 None:intergenic 60.0%
ACTGCTGTTCCAGGCCCTCT+TGG + chr8_2:46214510-46214529 Msa1250490:intron 60.0%
GTCACCCATGGCCAACTCCA+AGG - chr8_2:46216344-46216363 None:intergenic 60.0%
GCCATGGGTGACGAGTAAGC+AGG + chr8_2:46216352-46216371 Msa1250490:exon 60.0%
GCCTGCTTACTCGTCACCCA+TGG - chr8_2:46216356-46216375 None:intergenic 60.0%
AACCCTCCGCAAGTCGACGG+TGG + chr8_2:46210855-46210874 Msa1250490:CDS 65.0%
!! TGCCACCGTCGACTTGCGGA+GGG - chr8_2:46210860-46210879 None:intergenic 65.0%
!! CTGCTGCCACCGTCGACTTG+CGG - chr8_2:46210864-46210883 None:intergenic 65.0%
! TCGAGGAGGAGCACACTCCC+AGG - chr8_2:46211534-46211553 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG + chr8_2:46211533-46211552 Msa1250490:intron 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG + chr8_2:46211540-46211559 Msa1250490:intron 65.0%
!! CTGCCACCGTCGACTTGCGG+AGG - chr8_2:46210861-46210880 None:intergenic 70.0%
GTCGACGGTGGCAGCAGCGA+CGG + chr8_2:46210867-46210886 Msa1250490:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 46210543 46216836 46210543 ID=Msa1250490;Name=Msa1250490
chr8_2 mRNA 46210543 46216836 46210543 ID=Msa1250490-mRNA-1;Parent=Msa1250490;Name=Msa1250490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=226|1|1|1|1|1|6|467|186
chr8_2 exon 46210543 46211017 46210543 ID=Msa1250490-mRNA-1:exon:13894;Parent=Msa1250490-mRNA-1
chr8_2 exon 46211125 46211188 46211125 ID=Msa1250490-mRNA-1:exon:13895;Parent=Msa1250490-mRNA-1
chr8_2 exon 46212419 46212507 46212419 ID=Msa1250490-mRNA-1:exon:13896;Parent=Msa1250490-mRNA-1
chr8_2 exon 46213359 46213427 46213359 ID=Msa1250490-mRNA-1:exon:13897;Parent=Msa1250490-mRNA-1
chr8_2 exon 46216183 46216227 46216183 ID=Msa1250490-mRNA-1:exon:13898;Parent=Msa1250490-mRNA-1
chr8_2 exon 46216325 46216836 46216325 ID=Msa1250490-mRNA-1:exon:13899;Parent=Msa1250490-mRNA-1
chr8_2 five_prime_UTR 46210543 46210768 46210543 ID=Msa1250490-mRNA-1:five_prime_utr;Parent=Msa1250490-mRNA-1
chr8_2 CDS 46210769 46211017 46210769 ID=Msa1250490-mRNA-1:cds;Parent=Msa1250490-mRNA-1
chr8_2 CDS 46211125 46211188 46211125 ID=Msa1250490-mRNA-1:cds;Parent=Msa1250490-mRNA-1
chr8_2 CDS 46212419 46212507 46212419 ID=Msa1250490-mRNA-1:cds;Parent=Msa1250490-mRNA-1
chr8_2 CDS 46213359 46213427 46213359 ID=Msa1250490-mRNA-1:cds;Parent=Msa1250490-mRNA-1
chr8_2 CDS 46216183 46216227 46216183 ID=Msa1250490-mRNA-1:cds;Parent=Msa1250490-mRNA-1
chr8_2 CDS 46216325 46216369 46216325 ID=Msa1250490-mRNA-1:cds;Parent=Msa1250490-mRNA-1
chr8_2 three_prime_UTR 46216370 46216836 46216370 ID=Msa1250490-mRNA-1:three_prime_utr;Parent=Msa1250490-mRNA-1
Gene Sequence

>Msa1250490

ATGGCGCTACCCCTTCTTCGAATTCCCAGTAGTAGTTGTTGTTCGATTCCATTTATTAATACAAAGCCACGATATCTTCCTTCTAAAACCCTCCGCAAGTCGACGGTGGCAGCAGCGACGGAGCTTCAAACACCGGTGAGACTAACGGAAGCAAACGATTACCGGTATCCTAGTGGTGATGCTCCAACTCATAAGGTCACAGTTCACGATAGACAACGAGGAGTTGTTCACGAATTCCTTGTACCTGAGGACCAATATATATTGCATACTGCTGAGTCTCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGTTGCGCTGTTCGTATAAAGAATGGGAAAATTAAACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGAGCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTTGGACGTTATTTTGCAAGAGGACCAGTGGAAAGAGATGATTACGCCTTGGAGTTGGCCATGGGTGACGAGTAA

Protein sequence

>Msa1250490

MALPLLRIPSSSCCSIPFINTKPRYLPSKTLRKSTVAAATELQTPVRLTEANDYRYPSGDAPTHKVTVHDRQRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKNGKIKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMGDE*