AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0273270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0273270 MtrunA17_Chr2g0283351 99.052 422 4 0 1 422 1 422 0.0 848
Msa0273270 MtrunA17_Chr4g0046081 84.080 402 61 1 24 422 19 420 0.0 696
Msa0273270 MtrunA17_Chr5g0396481 39.550 311 186 1 83 391 72 382 6.61e-63 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0273270 AT5G45930.1 84.896 384 56 1 41 422 35 418 0.0 645
Msa0273270 AT4G18480.1 80.615 423 79 2 3 422 2 424 0.0 645
Msa0273270 AT1G08520.1 38.762 307 186 1 83 387 80 386 2.52e-62 214

Find 133 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGATCTTGATCAATT+TGG 0.148397 2_3:+4815221 None:intergenic
CCTGCTCGGTTTATCTTAAT+TGG 0.162278 2_3:-4815466 Msa0273270:CDS
CCCATGACTTCTGGATCTTC+TGG 0.179989 2_3:+4815790 None:intergenic
GTGAGAGATCGAGTTATAAA+AGG 0.190778 2_3:-4815760 Msa0273270:CDS
AACTGTAGTAAGAAGCTTTA+TGG 0.217969 2_3:-4816825 Msa0273270:CDS
GATTGGAGGTGTAATGATTA+TGG 0.219072 2_3:-4815908 Msa0273270:CDS
TGTTGACGAGGTTAATCTTT+TGG 0.253152 2_3:-4815572 Msa0273270:CDS
ATCATTACACCTCCAATCTT+TGG 0.264491 2_3:+4815913 None:intergenic
GGCCTGAGCTCCCCTTCTTC+AGG 0.282009 2_3:+4815433 None:intergenic
TAAAGCTTTGGCTGCTCTTA+AGG 0.287507 2_3:-4815125 Msa0273270:CDS
TAGTAGTATAAAATGAATAA+AGG 0.298356 2_3:+4817216 None:intergenic
TATTTATTTATAGCCTGATA+TGG 0.299156 2_3:-4814782 Msa0273270:three_prime_UTR
CGGTTTATCTTAATTGGTTC+GGG 0.302908 2_3:-4815460 Msa0273270:CDS
ATGCTCAAGTCGGGACTGTT+AGG 0.321538 2_3:-4815384 Msa0273270:CDS
AGTAGTATAAAATGAATAAA+GGG 0.326723 2_3:+4817217 None:intergenic
CCACAACTATTAGATAGATT+TGG 0.329771 2_3:-4815412 Msa0273270:CDS
TTCATAAATTTCTTGTATAC+AGG 0.330795 2_3:-4814847 Msa0273270:three_prime_UTR
TCGGTTTATCTTAATTGGTT+CGG 0.341266 2_3:-4815461 Msa0273270:CDS
CCATTGGAGTCAATAGATTC+AGG 0.345881 2_3:-4815028 Msa0273270:CDS
TCTTCTGGGTCTGAGTTATA+TGG 0.351902 2_3:+4815805 None:intergenic
CTACAACACATAACCATATC+AGG 0.354520 2_3:+4814769 None:intergenic
ACTTCTACTCCCATGACTTC+TGG 0.365261 2_3:+4815781 None:intergenic
CCATGACTTCTGGATCTTCT+GGG 0.365705 2_3:+4815791 None:intergenic
TAAGTCTCTCGAAATTCCTT+TGG 0.366656 2_3:+4815307 None:intergenic
AACATGGTTGATTTGCCATT+AGG 0.368329 2_3:-4815706 Msa0273270:CDS
TGAGAGATCGAGTTATAAAA+GGG 0.371671 2_3:-4815759 Msa0273270:CDS
ATTGGAGGTGTAATGATTAT+GGG 0.375076 2_3:-4815907 Msa0273270:CDS
AGATTGTAGAGGAGAGAGCT+AGG 0.378530 2_3:-4815342 Msa0273270:CDS
CATTAGGAGCTACAGAAGAT+AGG 0.380883 2_3:-4815690 Msa0273270:CDS
CTGTTGGATTCTGCTGCATC+AGG 0.384173 2_3:-4815529 Msa0273270:CDS
AGACGGTGTCTCAAGCAGTT+AGG 0.384711 2_3:+4815061 None:intergenic
AAAGCTTTGGCTGCTCTTAA+GGG 0.402953 2_3:-4815124 Msa0273270:CDS
ATCTGTGAGCTTCTCCTGCT+CGG 0.406916 2_3:+4815279 None:intergenic
GCAGATGGCATGCTTCCTAT+TGG 0.415599 2_3:+4817139 None:intergenic
AAGAAGCTTTATGGAGGAGT+TGG 0.417087 2_3:-4816816 Msa0273270:CDS
TATGGTTATGTGTTGTAGTA+AGG 0.417386 2_3:-4814764 Msa0273270:three_prime_UTR
CTATCTTCTGTAGCTCCTAA+TGG 0.422295 2_3:+4815691 None:intergenic
AAAGAGAGTGTGTGAGTGGA+AGG 0.427740 2_3:+4816971 None:intergenic
GTTGTAGAAGACATAGTTGA+AGG 0.434570 2_3:+4817055 None:intergenic
CGATTTACTTCCTGAGATCA+AGG 0.435603 2_3:-4815842 Msa0273270:CDS
CCGGATGGTTGGAGGCCAAT+AGG 0.436290 2_3:-4817154 Msa0273270:five_prime_UTR
ATCAACTACGGTTAGGTCAT+TGG 0.437961 2_3:-4815866 Msa0273270:CDS
AACGTGATTGATCCAAAGAT+TGG 0.439659 2_3:-4815925 Msa0273270:CDS
TTCTAAAGAAAGCGCGAGGC+CGG 0.441064 2_3:-4816004 Msa0273270:CDS
TCAGTGGCAACATTAACAAC+AGG 0.445906 2_3:+4816762 None:intergenic
GACGGTGTCTCAAGCAGTTA+GGG 0.450521 2_3:+4815062 None:intergenic
AATCTATCTATCTTCTTATC+CGG 0.450606 2_3:-4817173 Msa0273270:five_prime_UTR
TTAGAATTTAACCTTTCCTA+TGG 0.452291 2_3:-4814901 Msa0273270:three_prime_UTR
ATCCTGAAGAAGGGGAGCTC+AGG 0.452372 2_3:-4815435 Msa0273270:CDS
TGAAGTTAACTCTGTAGAAC+AGG 0.454733 2_3:-4816742 Msa0273270:intron
AAACAGAGCTGCTAAAGCTT+TGG 0.461836 2_3:-4815137 Msa0273270:CDS
TGTCCAACTATAGCAGCAAA+AGG 0.468363 2_3:+4815976 None:intergenic
TCTTTGGATCAATCACGTTA+AGG 0.470100 2_3:+4815929 None:intergenic
CTTCTTATCCGGATGGTTGG+AGG 0.472558 2_3:-4817162 Msa0273270:five_prime_UTR
CCCAGAAGATCCAGAAGTCA+TGG 0.480402 2_3:-4815791 Msa0273270:CDS
ATCTCAAGGTGAAAATCTCT+AGG 0.491689 2_3:-4815207 Msa0273270:CDS
TTGGAATGCATGCTCAAGTC+GGG 0.491946 2_3:-4815393 Msa0273270:CDS
TATCTTCTTATCCGGATGGT+TGG 0.493487 2_3:-4817165 Msa0273270:five_prime_UTR
GTTGGAATTAGTAGCACAAA+GGG 0.494468 2_3:-4816798 Msa0273270:CDS
TTTCTATCTCGCATCCTGCT+CGG 0.495735 2_3:-4815480 Msa0273270:CDS
GGTGTCAAGGCATTTGAGCC+AGG 0.499700 2_3:-4815628 Msa0273270:CDS
TCACTTGGTTGATGTGCTGT+TGG 0.502545 2_3:-4815545 Msa0273270:CDS
AGCTCTCACTGAGGGTGTCA+AGG 0.503283 2_3:-4815641 Msa0273270:CDS
CCTATTGGCCTCCAACCATC+CGG 0.505617 2_3:+4817154 None:intergenic
GAGTGTGTGAGTGGAAGGGT+TGG 0.517304 2_3:+4816976 None:intergenic
CCTGAATCTATTGACTCCAA+TGG 0.518336 2_3:+4815028 None:intergenic
CAGGGAAATCAACTACGGTT+AGG 0.519735 2_3:-4815873 Msa0273270:CDS
TGCTCAAGTCGGGACTGTTA+GGG 0.522981 2_3:-4815383 Msa0273270:CDS
CTTGAGACACCGTCTTAGAA+AGG 0.523882 2_3:-4815053 Msa0273270:CDS
TGGATTCTGCTGCATCAGGT+TGG 0.525455 2_3:-4815525 Msa0273270:CDS
GAATTTAACCTTTCCTATGG+CGG 0.526063 2_3:-4814898 Msa0273270:three_prime_UTR
ATTAGGAGCTACAGAAGATA+GGG 0.526401 2_3:-4815689 Msa0273270:CDS
TGGTTATGTGTTGTAGTAAG+GGG 0.530247 2_3:-4814762 Msa0273270:three_prime_UTR
AGAGACTTACAAAGCCGAGC+AGG 0.533133 2_3:-4815293 Msa0273270:CDS
GGTTCGGGAAATCCTGAAGA+AGG 0.534941 2_3:-4815445 Msa0273270:CDS
TTGGAGGTGTAATGATTATG+GGG 0.535125 2_3:-4815906 Msa0273270:CDS
TTAGCTTTAGCTAATAGTCC+TGG 0.538067 2_3:+4815610 None:intergenic
GGTTGGAAGAAGGAGAAGAA+AGG 0.540036 2_3:+4816993 None:intergenic
CAATATCCTCTACAGTCACT+TGG 0.541710 2_3:+4815095 None:intergenic
TGTGCAGAGTTGAATGTGGA+TGG 0.543317 2_3:-4815181 Msa0273270:CDS
CTATTAGCTAAAGCTAATAG+AGG 0.543722 2_3:-4815604 Msa0273270:CDS
TGAGTGGAAGGGTTGGAAGA+AGG 0.543842 2_3:+4816983 None:intergenic
CACACACTCTCTTTAAGCTC+AGG 0.546920 2_3:-4816962 Msa0273270:intron
ATGGTTATGTGTTGTAGTAA+GGG 0.551998 2_3:-4814763 Msa0273270:three_prime_UTR
CCAAATTGATCAAGATCTCA+AGG 0.555254 2_3:-4815221 Msa0273270:CDS
GGAGAAGAAAGGTAACGTGA+AGG 0.556964 2_3:+4817004 None:intergenic
AATAAATATAGTATAAGAGA+AGG 0.557426 2_3:+4814797 None:intergenic
CATAAAATCCGCCATAGGAA+AGG 0.562276 2_3:+4814890 None:intergenic
GCTACAGAAGATAGGGTATG+TGG 0.565619 2_3:-4815682 Msa0273270:CDS
TATCTATCTTCTTATCCGGA+TGG 0.566754 2_3:-4817169 Msa0273270:five_prime_UTR
TTGGAACACAGTGGAGAGAG+AGG 0.569168 2_3:-4815506 Msa0273270:CDS
GTAGTATAAAATGAATAAAG+GGG 0.570894 2_3:+4817218 None:intergenic
CCAGAAGATCCAGAAGTCAT+GGG 0.571144 2_3:-4815790 Msa0273270:CDS
CCAATTAAGATAAACCGAGC+AGG 0.575699 2_3:+4815466 None:intergenic
ATATAACAGTTTGTCTGCTG+TGG 0.577669 2_3:-4814950 Msa0273270:three_prime_UTR
GTCCAACTATAGCAGCAAAA+GGG 0.581894 2_3:+4815977 None:intergenic
CCGTCTTAGAAAGGATCCAT+TGG 0.583615 2_3:-4815044 Msa0273270:CDS
GTTCGGGAAATCCTGAAGAA+GGG 0.590838 2_3:-4815444 Msa0273270:CDS
TCTCAAGGTGAAAATCTCTA+GGG 0.593212 2_3:-4815206 Msa0273270:CDS
GGTTATGTGTTGTAGTAAGG+GGG 0.593356 2_3:-4814761 Msa0273270:three_prime_UTR
CCAAATCTATCTAATAGTTG+TGG 0.593953 2_3:+4815412 None:intergenic
TTCTACAGAGTTAACTTCAG+TGG 0.594027 2_3:+4816746 None:intergenic
GTGATTGATCCAAAGATTGG+AGG 0.596512 2_3:-4815922 Msa0273270:CDS
ACTATGTCTTCTACAACACT+AGG 0.601368 2_3:-4817049 Msa0273270:CDS
AAGACCATAAAATCCGCCAT+AGG 0.602662 2_3:+4814885 None:intergenic
AAGAGAGTGTGTGAGTGGAA+GGG 0.605818 2_3:+4816972 None:intergenic
CCAATGGATCCTTTCTAAGA+CGG 0.606040 2_3:+4815044 None:intergenic
GTAGCACAAAGGGAAAGTCT+AGG 0.606575 2_3:-4816788 Msa0273270:CDS
AAGAGACCAAGTGACTGTAG+AGG 0.612252 2_3:-4815101 Msa0273270:CDS
TTCGGGAAATCCTGAAGAAG+GGG 0.616573 2_3:-4815443 Msa0273270:CDS
GCTTAAAGAGAGTGTGTGAG+TGG 0.619697 2_3:+4816967 None:intergenic
TTTGGAATGCATGCTCAAGT+CGG 0.624410 2_3:-4815394 Msa0273270:CDS
TTGAATGTGGATGGATTGAG+AGG 0.624939 2_3:-4815172 Msa0273270:CDS
CAGATCAAATTACCTCGGCA+AGG 0.628152 2_3:-4815261 Msa0273270:CDS
CGAAAGTATCTTCCTTGCCG+AGG 0.629459 2_3:+4815249 None:intergenic
ACGTGAAGGAAGAAATGCAA+TGG 0.631404 2_3:+4817018 None:intergenic
AGTTGGAATTAGTAGCACAA+AGG 0.634276 2_3:-4816799 Msa0273270:CDS
TGGAGGTGTAATGATTATGG+GGG 0.635560 2_3:-4815905 Msa0273270:CDS
TAGTATAAAATGAATAAAGG+GGG 0.636150 2_3:+4817219 None:intergenic
TAGGTTTGACAAGAATCCAA+AGG 0.644338 2_3:-4815323 Msa0273270:CDS
AGGAACAGGGAAATCAACTA+CGG 0.645219 2_3:-4815878 Msa0273270:CDS
TGGAACACAGTGGAGAGAGA+GGG 0.656944 2_3:-4815505 Msa0273270:CDS
GAGAGATCGAGTTATAAAAG+GGG 0.661074 2_3:-4815758 Msa0273270:CDS
GCTGAGAGTGAAGATTGTAG+AGG 0.661411 2_3:-4815353 Msa0273270:CDS
TGTAGTAAGAAGCTTTATGG+AGG 0.665312 2_3:-4816822 Msa0273270:CDS
GCTCACAGATCAAATTACCT+CGG 0.673145 2_3:-4815266 Msa0273270:CDS
AGGAATCTTATATGTTGACG+AGG 0.675249 2_3:-4815584 Msa0273270:CDS
ATAGCAGCAAAAGGGTACAC+CGG 0.687026 2_3:+4815985 None:intergenic
CTATTTCTAAAGAAAGCGCG+AGG 0.690036 2_3:-4816008 Msa0273270:CDS
GGTGTGTGCAGAGTTGAATG+TGG 0.691143 2_3:-4815185 Msa0273270:CDS
CAGTGGCAACATTAACAACA+GGG 0.692478 2_3:+4816763 None:intergenic
TGTGTTGAGCAAAATCAACA+TGG 0.720795 2_3:-4815722 Msa0273270:CDS
TGCATCAGGTTGGAACACAG+TGG 0.734702 2_3:-4815515 Msa0273270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAGTATAAAATGAATAAA+GGG + chr2_3:4814714-4814733 None:intergenic 15.0%
!! TAGTAGTATAAAATGAATAA+AGG + chr2_3:4814715-4814734 None:intergenic 15.0%
!!! ATTCATTTTATACTACTAAA+AGG - chr2_3:4814717-4814736 Msa0273270:three_prime_UTR 15.0%
!!! TATTCTATTTTAGCAAATTA+TGG - chr2_3:4815229-4815248 Msa0273270:CDS 15.0%
!! TAAACTTATATAAGTATGTT+TGG - chr2_3:4815316-4815335 Msa0273270:CDS 15.0%
!!! CGTTATTTTATCTTTTATTA+TGG - chr2_3:4815507-4815526 Msa0273270:CDS 15.0%
!! AATAAATATAGTATAAGAGA+AGG + chr2_3:4817134-4817153 None:intergenic 15.0%
!! TAGTATAAAATGAATAAAGG+GGG + chr2_3:4814712-4814731 None:intergenic 20.0%
!! GTAGTATAAAATGAATAAAG+GGG + chr2_3:4814713-4814732 None:intergenic 20.0%
!!! ACTCAAGTTTATTTGTTTTA+TGG + chr2_3:4814814-4814833 None:intergenic 20.0%
!! TTCTCAGATAAAATAAGATT+AGG + chr2_3:4815724-4815743 None:intergenic 20.0%
!! TTCATAAATTTCTTGTATAC+AGG - chr2_3:4817081-4817100 Msa0273270:five_prime_UTR 20.0%
!! TATTTATTTATAGCCTGATA+TGG - chr2_3:4817146-4817165 Msa0273270:five_prime_UTR 20.0%
! AATCTATCTATCTTCTTATC+CGG - chr2_3:4814755-4814774 Msa0273270:three_prime_UTR 25.0%
!!! TTTATTTGTTTTATGGCAGA+TGG + chr2_3:4814807-4814826 None:intergenic 25.0%
! AAGTTGTTTATCCAAACAAT+AGG - chr2_3:4815575-4815594 Msa0273270:CDS 25.0%
! AGTTGTTTATCCAAACAATA+GGG - chr2_3:4815576-4815595 Msa0273270:CDS 25.0%
! TTGTAAGTTGTAACACTTAT+AGG + chr2_3:4815750-4815769 None:intergenic 25.0%
! TGCATGAAATTAGTATACTT+TGG + chr2_3:4815789-4815808 None:intergenic 25.0%
! ACTAATTTCATGCATTTGTT+AGG - chr2_3:4815795-4815814 Msa0273270:CDS 25.0%
! TTCTTAGACGTAAATGATTA+GGG - chr2_3:4815818-4815837 Msa0273270:CDS 25.0%
! TTAGAATTTAACCTTTCCTA+TGG - chr2_3:4817027-4817046 Msa0273270:CDS 25.0%
!!! GACTGTTTTAAGTAAATACT+TGG + chr2_3:4817112-4817131 None:intergenic 25.0%
!! TTTCCTTGCTTTTCTTGTTT+TGG - chr2_3:4815029-4815048 Msa0273270:CDS 30.0%
TTTGGACATTATGTGATTGT+TGG - chr2_3:4815047-4815066 Msa0273270:CDS 30.0%
ATTGAAATGTTGTCTTTGCA+GGG - chr2_3:4815077-4815096 Msa0273270:CDS 30.0%
AACTGTAGTAAGAAGCTTTA+TGG - chr2_3:4815103-4815122 Msa0273270:CDS 30.0%
TTAAATATGTGCAATGTGCA+AGG + chr2_3:4815299-4815318 None:intergenic 30.0%
CTATCGACATATCAAGTATT+TGG + chr2_3:4815603-4815622 None:intergenic 30.0%
ACTTACAAGCTAATTCAAAC+TGG - chr2_3:4815762-4815781 Msa0273270:CDS 30.0%
GTTCTTAGACGTAAATGATT+AGG - chr2_3:4815817-4815836 Msa0273270:CDS 30.0%
TAGAAATAGTATTCAGACTC+TGG + chr2_3:4815909-4815928 None:intergenic 30.0%
! ATTGGAGGTGTAATGATTAT+GGG - chr2_3:4816021-4816040 Msa0273270:CDS 30.0%
TGAGAGATCGAGTTATAAAA+GGG - chr2_3:4816169-4816188 Msa0273270:intron 30.0%
CTATTAGCTAAAGCTAATAG+AGG - chr2_3:4816324-4816343 Msa0273270:intron 30.0%
! TAATCTTTTGGATGATCACT+TGG - chr2_3:4816368-4816387 Msa0273270:intron 30.0%
TCGGTTTATCTTAATTGGTT+CGG - chr2_3:4816467-4816486 Msa0273270:intron 30.0%
CCAAATCTATCTAATAGTTG+TGG + chr2_3:4816519-4816538 None:intergenic 30.0%
CCACAACTATTAGATAGATT+TGG - chr2_3:4816516-4816535 Msa0273270:intron 30.0%
TATGGTTATGTGTTGTAGTA+AGG - chr2_3:4817164-4817183 Msa0273270:five_prime_UTR 30.0%
ATGGTTATGTGTTGTAGTAA+GGG - chr2_3:4817165-4817184 Msa0273270:five_prime_UTR 30.0%
TATCTATCTTCTTATCCGGA+TGG - chr2_3:4814759-4814778 Msa0273270:three_prime_UTR 35.0%
GTTGTAGAAGACATAGTTGA+AGG + chr2_3:4814876-4814895 None:intergenic 35.0%
ACTATGTCTTCTACAACACT+AGG - chr2_3:4814879-4814898 Msa0273270:three_prime_UTR 35.0%
TGTCCAAAACAAGAAAAGCA+AGG + chr2_3:4815035-4815054 None:intergenic 35.0%
CATTGAAATGTTGTCTTTGC+AGG - chr2_3:4815076-4815095 Msa0273270:CDS 35.0%
! TGTAGTAAGAAGCTTTATGG+AGG - chr2_3:4815106-4815125 Msa0273270:CDS 35.0%
AGTTGGAATTAGTAGCACAA+AGG - chr2_3:4815129-4815148 Msa0273270:CDS 35.0%
GTTGGAATTAGTAGCACAAA+GGG - chr2_3:4815130-4815149 Msa0273270:CDS 35.0%
TTCTACAGAGTTAACTTCAG+TGG + chr2_3:4815185-4815204 None:intergenic 35.0%
TGAAGTTAACTCTGTAGAAC+AGG - chr2_3:4815186-4815205 Msa0273270:CDS 35.0%
TAAACACTGATGCAACTGTT+TGG - chr2_3:4815368-4815387 Msa0273270:CDS 35.0%
AAACACTGATGCAACTGTTT+GGG - chr2_3:4815369-4815388 Msa0273270:CDS 35.0%
AGTATTTGGACCCTATTGTT+TGG + chr2_3:4815589-4815608 None:intergenic 35.0%
TCTTTGGATCAATCACGTTA+AGG + chr2_3:4816002-4816021 None:intergenic 35.0%
AACGTGATTGATCCAAAGAT+TGG - chr2_3:4816003-4816022 Msa0273270:CDS 35.0%
ATCATTACACCTCCAATCTT+TGG + chr2_3:4816018-4816037 None:intergenic 35.0%
! GATTGGAGGTGTAATGATTA+TGG - chr2_3:4816020-4816039 Msa0273270:CDS 35.0%
! TTGGAGGTGTAATGATTATG+GGG - chr2_3:4816022-4816041 Msa0273270:intron 35.0%
GTGAGAGATCGAGTTATAAA+AGG - chr2_3:4816168-4816187 Msa0273270:intron 35.0%
GAGAGATCGAGTTATAAAAG+GGG - chr2_3:4816170-4816189 Msa0273270:intron 35.0%
!! GTTGATTTTGCTCAACACAA+TGG + chr2_3:4816205-4816224 None:intergenic 35.0%
TGTGTTGAGCAAAATCAACA+TGG - chr2_3:4816206-4816225 Msa0273270:intron 35.0%
!! AACATGGTTGATTTGCCATT+AGG - chr2_3:4816222-4816241 Msa0273270:intron 35.0%
ATTAGGAGCTACAGAAGATA+GGG - chr2_3:4816239-4816258 Msa0273270:intron 35.0%
ATTGAAAAAGCTCTCACTGA+GGG - chr2_3:4816279-4816298 Msa0273270:intron 35.0%
!! TTAGCTTTAGCTAATAGTCC+TGG + chr2_3:4816321-4816340 None:intergenic 35.0%
AGGAATCTTATATGTTGACG+AGG - chr2_3:4816344-4816363 Msa0273270:intron 35.0%
! TGTTGACGAGGTTAATCTTT+TGG - chr2_3:4816356-4816375 Msa0273270:intron 35.0%
! CGGTTTATCTTAATTGGTTC+GGG - chr2_3:4816468-4816487 Msa0273270:intron 35.0%
TAGGTTTGACAAGAATCCAA+AGG - chr2_3:4816605-4816624 Msa0273270:intron 35.0%
TAAGTCTCTCGAAATTCCTT+TGG + chr2_3:4816624-4816643 None:intergenic 35.0%
CCTTGAGATCTTGATCAATT+TGG + chr2_3:4816710-4816729 None:intergenic 35.0%
CCAAATTGATCAAGATCTCA+AGG - chr2_3:4816707-4816726 Msa0273270:intron 35.0%
ATCTCAAGGTGAAAATCTCT+AGG - chr2_3:4816721-4816740 Msa0273270:intron 35.0%
TCTCAAGGTGAAAATCTCTA+GGG - chr2_3:4816722-4816741 Msa0273270:intron 35.0%
ATATAACAGTTTGTCTGCTG+TGG - chr2_3:4816978-4816997 Msa0273270:CDS 35.0%
GAATTTAACCTTTCCTATGG+CGG - chr2_3:4817030-4817049 Msa0273270:CDS 35.0%
CTACAACACATAACCATATC+AGG + chr2_3:4817162-4817181 None:intergenic 35.0%
TGGTTATGTGTTGTAGTAAG+GGG - chr2_3:4817166-4817185 Msa0273270:five_prime_UTR 35.0%
ACTAAAAGGAGAGAGAGAGA+AGG - chr2_3:4814731-4814750 Msa0273270:three_prime_UTR 40.0%
TATCTTCTTATCCGGATGGT+TGG - chr2_3:4814763-4814782 Msa0273270:three_prime_UTR 40.0%
ACGTGAAGGAAGAAATGCAA+TGG + chr2_3:4814913-4814932 None:intergenic 40.0%
! AAGAAGCTTTATGGAGGAGT+TGG - chr2_3:4815112-4815131 Msa0273270:CDS 40.0%
CAGTGGCAACATTAACAACA+GGG + chr2_3:4815168-4815187 None:intergenic 40.0%
TCAGTGGCAACATTAACAAC+AGG + chr2_3:4815169-4815188 None:intergenic 40.0%
GACGTAAATGATTAGGGTCT+TGG - chr2_3:4815824-4815843 Msa0273270:CDS 40.0%
GGACATCAAAAGTTCAGAGT+TGG + chr2_3:4815888-4815907 None:intergenic 40.0%
!! CTATTTCTAAAGAAAGCGCG+AGG - chr2_3:4815920-4815939 Msa0273270:CDS 40.0%
! TACCCTTTTGCTGCTATAGT+TGG - chr2_3:4815949-4815968 Msa0273270:CDS 40.0%
GTCCAACTATAGCAGCAAAA+GGG + chr2_3:4815954-4815973 None:intergenic 40.0%
TGTCCAACTATAGCAGCAAA+AGG + chr2_3:4815955-4815974 None:intergenic 40.0%
! TTTTGCTGCTATAGTTGGAC+AGG - chr2_3:4815954-4815973 Msa0273270:CDS 40.0%
GTGATTGATCCAAAGATTGG+AGG - chr2_3:4816006-4816025 Msa0273270:CDS 40.0%
! TGGAGGTGTAATGATTATGG+GGG - chr2_3:4816023-4816042 Msa0273270:intron 40.0%
GTAATGATTATGGGGGATAG+AGG - chr2_3:4816030-4816049 Msa0273270:intron 40.0%
AGGAACAGGGAAATCAACTA+CGG - chr2_3:4816050-4816069 Msa0273270:intron 40.0%
ATCAACTACGGTTAGGTCAT+TGG - chr2_3:4816062-4816081 Msa0273270:intron 40.0%
CGATTTACTTCCTGAGATCA+AGG - chr2_3:4816086-4816105 Msa0273270:intron 40.0%
CCAAAAACAACCTTGATCTC+AGG + chr2_3:4816099-4816118 None:intergenic 40.0%
!! CCTGAGATCAAGGTTGTTTT+TGG - chr2_3:4816096-4816115 Msa0273270:intron 40.0%
TCTTCTGGGTCTGAGTTATA+TGG + chr2_3:4816126-4816145 None:intergenic 40.0%
CTATCTTCTGTAGCTCCTAA+TGG + chr2_3:4816240-4816259 None:intergenic 40.0%
CATTAGGAGCTACAGAAGAT+AGG - chr2_3:4816238-4816257 Msa0273270:intron 40.0%
CATTGAAAAAGCTCTCACTG+AGG - chr2_3:4816278-4816297 Msa0273270:intron 40.0%
CCAATTAAGATAAACCGAGC+AGG + chr2_3:4816465-4816484 None:intergenic 40.0%
CCTGCTCGGTTTATCTTAAT+TGG - chr2_3:4816462-4816481 Msa0273270:intron 40.0%
! TTTGGAATGCATGCTCAAGT+CGG - chr2_3:4816534-4816553 Msa0273270:intron 40.0%
GCTCACAGATCAAATTACCT+CGG - chr2_3:4816662-4816681 Msa0273270:intron 40.0%
!! TTGAATGTGGATGGATTGAG+AGG - chr2_3:4816756-4816775 Msa0273270:CDS 40.0%
AAACAGAGCTGCTAAAGCTT+TGG - chr2_3:4816791-4816810 Msa0273270:CDS 40.0%
! TAAAGCTTTGGCTGCTCTTA+AGG - chr2_3:4816803-4816822 Msa0273270:CDS 40.0%
! AAAGCTTTGGCTGCTCTTAA+GGG - chr2_3:4816804-4816823 Msa0273270:CDS 40.0%
CAATATCCTCTACAGTCACT+TGG + chr2_3:4816836-4816855 None:intergenic 40.0%
! CCAATGGATCCTTTCTAAGA+CGG + chr2_3:4816887-4816906 None:intergenic 40.0%
!! CCTGAATCTATTGACTCCAA+TGG + chr2_3:4816903-4816922 None:intergenic 40.0%
CCATTGGAGTCAATAGATTC+AGG - chr2_3:4816900-4816919 Msa0273270:intron 40.0%
CATAAAATCCGCCATAGGAA+AGG + chr2_3:4817041-4817060 None:intergenic 40.0%
!!! CTTTCCTATGGCGGATTTTA+TGG - chr2_3:4817039-4817058 Msa0273270:CDS 40.0%
AAGACCATAAAATCCGCCAT+AGG + chr2_3:4817046-4817065 None:intergenic 40.0%
GGTTATGTGTTGTAGTAAGG+GGG - chr2_3:4817167-4817186 Msa0273270:five_prime_UTR 40.0%
GGAGAAGAAAGGTAACGTGA+AGG + chr2_3:4814927-4814946 None:intergenic 45.0%
GGTTGGAAGAAGGAGAAGAA+AGG + chr2_3:4814938-4814957 None:intergenic 45.0%
! AAGAGAGTGTGTGAGTGGAA+GGG + chr2_3:4814959-4814978 None:intergenic 45.0%
! AAAGAGAGTGTGTGAGTGGA+AGG + chr2_3:4814960-4814979 None:intergenic 45.0%
! GCTTAAAGAGAGTGTGTGAG+TGG + chr2_3:4814964-4814983 None:intergenic 45.0%
CACACACTCTCTTTAAGCTC+AGG - chr2_3:4814966-4814985 Msa0273270:three_prime_UTR 45.0%
GTAGCACAAAGGGAAAGTCT+AGG - chr2_3:4815140-4815159 Msa0273270:CDS 45.0%
! TGTAGAACAGGTACTGTTGC+TGG - chr2_3:4815198-4815217 Msa0273270:CDS 45.0%
CAACTGTTTGGGAGAGCTTA+TGG - chr2_3:4815380-4815399 Msa0273270:CDS 45.0%
! ATAGCAGCAAAAGGGTACAC+CGG + chr2_3:4815946-4815965 None:intergenic 45.0%
ATTATGGGGGATAGAGGAAC+AGG - chr2_3:4816036-4816055 Msa0273270:intron 45.0%
TTATGGGGGATAGAGGAACA+GGG - chr2_3:4816037-4816056 Msa0273270:intron 45.0%
CAGGGAAATCAACTACGGTT+AGG - chr2_3:4816055-4816074 Msa0273270:intron 45.0%
CCATGACTTCTGGATCTTCT+GGG + chr2_3:4816140-4816159 None:intergenic 45.0%
CCAGAAGATCCAGAAGTCAT+GGG - chr2_3:4816138-4816157 Msa0273270:intron 45.0%
ACTTCTACTCCCATGACTTC+TGG + chr2_3:4816150-4816169 None:intergenic 45.0%
GCTACAGAAGATAGGGTATG+TGG - chr2_3:4816246-4816265 Msa0273270:intron 45.0%
! TCACTTGGTTGATGTGCTGT+TGG - chr2_3:4816383-4816402 Msa0273270:intron 45.0%
TTTCTATCTCGCATCCTGCT+CGG - chr2_3:4816448-4816467 Msa0273270:intron 45.0%
GTTCGGGAAATCCTGAAGAA+GGG - chr2_3:4816484-4816503 Msa0273270:intron 45.0%
TTCGGGAAATCCTGAAGAAG+GGG - chr2_3:4816485-4816504 Msa0273270:intron 45.0%
TTGGAATGCATGCTCAAGTC+GGG - chr2_3:4816535-4816554 Msa0273270:intron 45.0%
GCTGAGAGTGAAGATTGTAG+AGG - chr2_3:4816575-4816594 Msa0273270:intron 45.0%
AGATTGTAGAGGAGAGAGCT+AGG - chr2_3:4816586-4816605 Msa0273270:intron 45.0%
CAGATCAAATTACCTCGGCA+AGG - chr2_3:4816667-4816686 Msa0273270:intron 45.0%
TGTGCAGAGTTGAATGTGGA+TGG - chr2_3:4816747-4816766 Msa0273270:CDS 45.0%
AAGAGACCAAGTGACTGTAG+AGG - chr2_3:4816827-4816846 Msa0273270:CDS 45.0%
CTTGAGACACCGTCTTAGAA+AGG - chr2_3:4816875-4816894 Msa0273270:intron 45.0%
CCGTCTTAGAAAGGATCCAT+TGG - chr2_3:4816884-4816903 Msa0273270:intron 45.0%
CTTCTTATCCGGATGGTTGG+AGG - chr2_3:4814766-4814785 Msa0273270:three_prime_UTR 50.0%
GCAGATGGCATGCTTCCTAT+TGG + chr2_3:4814792-4814811 None:intergenic 50.0%
TGAGTGGAAGGGTTGGAAGA+AGG + chr2_3:4814948-4814967 None:intergenic 50.0%
! TTCTAAAGAAAGCGCGAGGC+CGG - chr2_3:4815924-4815943 Msa0273270:CDS 50.0%
CCCAGAAGATCCAGAAGTCA+TGG - chr2_3:4816137-4816156 Msa0273270:intron 50.0%
CCCATGACTTCTGGATCTTC+TGG + chr2_3:4816141-4816160 None:intergenic 50.0%
CTGTTGGATTCTGCTGCATC+AGG - chr2_3:4816399-4816418 Msa0273270:intron 50.0%
TGGATTCTGCTGCATCAGGT+TGG - chr2_3:4816403-4816422 Msa0273270:intron 50.0%
!! TGCATCAGGTTGGAACACAG+TGG - chr2_3:4816413-4816432 Msa0273270:intron 50.0%
TTGGAACACAGTGGAGAGAG+AGG - chr2_3:4816422-4816441 Msa0273270:intron 50.0%
TGGAACACAGTGGAGAGAGA+GGG - chr2_3:4816423-4816442 Msa0273270:intron 50.0%
GGTTCGGGAAATCCTGAAGA+AGG - chr2_3:4816483-4816502 Msa0273270:intron 50.0%
ATGCTCAAGTCGGGACTGTT+AGG - chr2_3:4816544-4816563 Msa0273270:intron 50.0%
TGCTCAAGTCGGGACTGTTA+GGG - chr2_3:4816545-4816564 Msa0273270:intron 50.0%
AGAGACTTACAAAGCCGAGC+AGG - chr2_3:4816635-4816654 Msa0273270:intron 50.0%
ATCTGTGAGCTTCTCCTGCT+CGG + chr2_3:4816652-4816671 None:intergenic 50.0%
!! CGAAAGTATCTTCCTTGCCG+AGG + chr2_3:4816682-4816701 None:intergenic 50.0%
GGTGTGTGCAGAGTTGAATG+TGG - chr2_3:4816743-4816762 Msa0273270:CDS 50.0%
GACGGTGTCTCAAGCAGTTA+GGG + chr2_3:4816869-4816888 None:intergenic 50.0%
AGACGGTGTCTCAAGCAGTT+AGG + chr2_3:4816870-4816889 None:intergenic 50.0%
! CCTATTGGCCTCCAACCATC+CGG + chr2_3:4814777-4814796 None:intergenic 55.0%
GAGTGTGTGAGTGGAAGGGT+TGG + chr2_3:4814955-4814974 None:intergenic 55.0%
!! AGCTCTCACTGAGGGTGTCA+AGG - chr2_3:4816287-4816306 Msa0273270:intron 55.0%
! GGTGTCAAGGCATTTGAGCC+AGG - chr2_3:4816300-4816319 Msa0273270:intron 55.0%
ATCCTGAAGAAGGGGAGCTC+AGG - chr2_3:4816493-4816512 Msa0273270:intron 55.0%
CCGGATGGTTGGAGGCCAAT+AGG - chr2_3:4814774-4814793 Msa0273270:three_prime_UTR 60.0%
GGCCTGAGCTCCCCTTCTTC+AGG + chr2_3:4816498-4816517 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 4814701 4817249 4814701 ID=Msa0273270;Name=Msa0273270
chr2_3 mRNA 4814701 4817249 4814701 ID=Msa0273270-mRNA-1;Parent=Msa0273270;Name=Msa0273270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=181|1|1|1|1|1|3|287|422
chr2_3 exon 4814701 4816040 4814701 ID=Msa0273270-mRNA-1:exon:2392;Parent=Msa0273270-mRNA-1
chr2_3 exon 4816743 4816852 4816743 ID=Msa0273270-mRNA-1:exon:2391;Parent=Msa0273270-mRNA-1
chr2_3 exon 4816963 4817249 4816963 ID=Msa0273270-mRNA-1:exon:2390;Parent=Msa0273270-mRNA-1
chr2_3 five_prime_UTR 4817069 4817249 4817069 ID=Msa0273270-mRNA-1:five_prime_utr;Parent=Msa0273270-mRNA-1
chr2_3 CDS 4816963 4817068 4816963 ID=Msa0273270-mRNA-1:cds;Parent=Msa0273270-mRNA-1
chr2_3 CDS 4816743 4816852 4816743 ID=Msa0273270-mRNA-1:cds;Parent=Msa0273270-mRNA-1
chr2_3 CDS 4814988 4816040 4814988 ID=Msa0273270-mRNA-1:cds;Parent=Msa0273270-mRNA-1
chr2_3 three_prime_UTR 4814701 4814987 4814701 ID=Msa0273270-mRNA-1:three_prime_utr;Parent=Msa0273270-mRNA-1
Gene Sequence

>Msa0273270

ATGTCTTCTACAACACTAGGCACTTCTTCCATTGCATTTCTTCCTTCACGTTACCTTTCTTCTCCTTCTTCCAACCCTTCCACTCACACACTCTCTTTAAGCTCAGGGCAAAACTGTAGTAAGAAGCTTTATGGAGGAGTTGGAATTAGTAGCACAAAGGGAAAGTCTAGGTTCCCTGTTGTTAATGTTGCCACTGAAGTTAACTCTGTAGAACAGAGTCTGAATACTATTTCTAAAGAAAGCGCGAGGCCGGTGTACCCTTTTGCTGCTATAGTTGGACAGGATGAGATGAAGCTTTGTCTTCTCCTTAACGTGATTGATCCAAAGATTGGAGGTGTAATGATTATGGGGGATAGAGGAACAGGGAAATCAACTACGGTTAGGTCATTGGTCGATTTACTTCCTGAGATCAAGGTTGTTTTTGGTGATCCATATAACTCAGACCCAGAAGATCCAGAAGTCATGGGAGTAGAAGTGAGAGATCGAGTTATAAAAGGGGAGCAACTTTCCATTGTGTTGAGCAAAATCAACATGGTTGATTTGCCATTAGGAGCTACAGAAGATAGGGTATGTGGAACGATTGACATTGAAAAAGCTCTCACTGAGGGTGTCAAGGCATTTGAGCCAGGACTATTAGCTAAAGCTAATAGAGGAATCTTATATGTTGACGAGGTTAATCTTTTGGATGATCACTTGGTTGATGTGCTGTTGGATTCTGCTGCATCAGGTTGGAACACAGTGGAGAGAGAGGGTATTTCTATCTCGCATCCTGCTCGGTTTATCTTAATTGGTTCGGGAAATCCTGAAGAAGGGGAGCTCAGGCCACAACTATTAGATAGATTTGGAATGCATGCTCAAGTCGGGACTGTTAGGGATGCTGAGCTGAGAGTGAAGATTGTAGAGGAGAGAGCTAGGTTTGACAAGAATCCAAAGGAATTTCGAGAGACTTACAAAGCCGAGCAGGAGAAGCTCACAGATCAAATTACCTCGGCAAGGAAGATACTTTCGTCTGTCCAAATTGATCAAGATCTCAAGGTGAAAATCTCTAGGGTGTGTGCAGAGTTGAATGTGGATGGATTGAGAGGAGACATAGTATCAAACAGAGCTGCTAAAGCTTTGGCTGCTCTTAAGGGAAGAGACCAAGTGACTGTAGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGTCTTAGAAAGGATCCATTGGAGTCAATAGATTCAGGTTTACTTGTTACAGAGAAATTTTATGAAGTATTCAGCTGA

Protein sequence

>Msa0273270

MSSTTLGTSSIAFLPSRYLSSPSSNPSTHTLSLSSGQNCSKKLYGGVGISSTKGKSRFPVVNVATEVNSVEQSLNTISKESARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVFGDPYNSDPEDPEVMGVEVRDRVIKGEQLSIVLSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRETYKAEQEKLTDQITSARKILSSVQIDQDLKVKISRVCAELNVDGLRGDIVSNRAAKALAALKGRDQVTVEDIATVIPNCLRHRLRKDPLESIDSGLLVTEKFYEVFS*