AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0234930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234930 MtrunA17_Chr2g0283351 99.052 422 4 0 1 422 1 422 0.0 848
Msa0234930 MtrunA17_Chr4g0046081 84.080 402 61 1 24 422 19 420 0.0 696
Msa0234930 MtrunA17_Chr5g0396481 39.550 311 186 1 83 391 72 382 6.61e-63 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0234930 AT5G45930.1 84.896 384 56 1 41 422 35 418 0.0 645
Msa0234930 AT4G18480.1 80.615 423 79 2 3 422 2 424 0.0 645
Msa0234930 AT1G08520.1 38.762 307 186 1 83 387 80 386 2.52e-62 214

Find 129 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGATCTTGATCAATT+TGG 0.148397 2_2:+7700233 None:intergenic
CCTGCTCGGTTTATCTTAAT+TGG 0.162278 2_2:-7700478 Msa0234930:CDS
CCCATGACTTCTGGATCTTC+TGG 0.179989 2_2:+7700802 None:intergenic
GTGAGAGATCGAGTTATAAA+AGG 0.190778 2_2:-7700772 Msa0234930:CDS
AACTGTAGTAAGAAGCTTTA+TGG 0.217969 2_2:-7701836 Msa0234930:CDS
GATTGGAGGTGTAATGATTA+TGG 0.219072 2_2:-7700920 Msa0234930:CDS
TGTTGACGAGGTTAATCTTT+TGG 0.253152 2_2:-7700584 Msa0234930:CDS
ATCATTACACCTCCAATCTT+TGG 0.264491 2_2:+7700925 None:intergenic
GGCCTGAGCTCCCCTTCTTC+AGG 0.282009 2_2:+7700445 None:intergenic
TAAAGCTTTGGCTGCTCTTA+AGG 0.287507 2_2:-7700137 Msa0234930:CDS
TATTTATTTATAGCCTGATA+TGG 0.289819 2_2:-7699796 Msa0234930:three_prime_UTR
CGGTTTATCTTAATTGGTTC+GGG 0.302908 2_2:-7700472 Msa0234930:CDS
ATGCTCAAGTCGGGACTGTT+AGG 0.321538 2_2:-7700396 Msa0234930:CDS
CCACAACTATTAGATAGATT+TGG 0.329771 2_2:-7700424 Msa0234930:CDS
TTCATAAATTTCTTGTATAC+AGG 0.330795 2_2:-7699859 Msa0234930:three_prime_UTR
TCGGTTTATCTTAATTGGTT+CGG 0.341266 2_2:-7700473 Msa0234930:CDS
CCATTGGAGTCAATAGATTC+AGG 0.345881 2_2:-7700040 Msa0234930:CDS
TCTTCTGGGTCTGAGTTATA+TGG 0.351902 2_2:+7700817 None:intergenic
CTACAACACATAACCATATC+AGG 0.354520 2_2:+7699783 None:intergenic
ACTTCTACTCCCATGACTTC+TGG 0.365261 2_2:+7700793 None:intergenic
CCATGACTTCTGGATCTTCT+GGG 0.365705 2_2:+7700803 None:intergenic
TAAGTCTCTCGAAATTCCTT+TGG 0.366656 2_2:+7700319 None:intergenic
AACATGGTTGATTTGCCATT+AGG 0.368329 2_2:-7700718 Msa0234930:CDS
TGAGAGATCGAGTTATAAAA+GGG 0.371671 2_2:-7700771 Msa0234930:CDS
ATTGGAGGTGTAATGATTAT+GGG 0.375076 2_2:-7700919 Msa0234930:CDS
AGATTGTAGAGGAGAGAGCT+AGG 0.378530 2_2:-7700354 Msa0234930:CDS
CATTAGGAGCTACAGAAGAT+AGG 0.380883 2_2:-7700702 Msa0234930:CDS
CTGTTGGATTCTGCTGCATC+AGG 0.384173 2_2:-7700541 Msa0234930:CDS
AGACGGTGTCTCAAGCAGTT+AGG 0.384711 2_2:+7700073 None:intergenic
AAAGCTTTGGCTGCTCTTAA+GGG 0.402953 2_2:-7700136 Msa0234930:CDS
ATCTGTGAGCTTCTCCTGCT+CGG 0.406916 2_2:+7700291 None:intergenic
GCAGATGGCATGCTTCCTAT+TGG 0.415599 2_2:+7702150 None:intergenic
AAGAAGCTTTATGGAGGAGT+TGG 0.417087 2_2:-7701827 Msa0234930:CDS
TATGGTTATGTGTTGTAGTA+AGG 0.417386 2_2:-7699778 Msa0234930:three_prime_UTR
CTATCTTCTGTAGCTCCTAA+TGG 0.422295 2_2:+7700703 None:intergenic
AAAGAGAGTGTGTGAGTGGA+AGG 0.427740 2_2:+7701982 None:intergenic
GTTGTAGAAGACATAGTTGA+AGG 0.434570 2_2:+7702066 None:intergenic
CGATTTACTTCCTGAGATCA+AGG 0.435603 2_2:-7700854 Msa0234930:CDS
CCGGATGGTTGGAGGCCAAT+AGG 0.436290 2_2:-7702165 Msa0234930:five_prime_UTR
ATCAACTACGGTTAGGTCAT+TGG 0.437961 2_2:-7700878 Msa0234930:CDS
AACGTGATTGATCCAAAGAT+TGG 0.439659 2_2:-7700937 Msa0234930:CDS
TTCTAAAGAAAGCGCGAGGC+CGG 0.441064 2_2:-7701016 Msa0234930:CDS
TCAGTGGCAACATTAACAAC+AGG 0.445906 2_2:+7701773 None:intergenic
GACGGTGTCTCAAGCAGTTA+GGG 0.450521 2_2:+7700074 None:intergenic
AATCTATCTATCTTCTTATC+CGG 0.450606 2_2:-7702184 Msa0234930:five_prime_UTR
TTAGAATTTAACCTTTCCTA+TGG 0.452291 2_2:-7699913 Msa0234930:three_prime_UTR
ATCCTGAAGAAGGGGAGCTC+AGG 0.452372 2_2:-7700447 Msa0234930:CDS
TGAAGTTAACTCTGTAGAAC+AGG 0.454733 2_2:-7701753 Msa0234930:intron
AAACAGAGCTGCTAAAGCTT+TGG 0.461836 2_2:-7700149 Msa0234930:CDS
TGTCCAACTATAGCAGCAAA+AGG 0.468363 2_2:+7700988 None:intergenic
TCTTTGGATCAATCACGTTA+AGG 0.470100 2_2:+7700941 None:intergenic
CTTCTTATCCGGATGGTTGG+AGG 0.472558 2_2:-7702173 Msa0234930:five_prime_UTR
CCCAGAAGATCCAGAAGTCA+TGG 0.480402 2_2:-7700803 Msa0234930:CDS
ATCTCAAGGTGAAAATCTCT+AGG 0.491689 2_2:-7700219 Msa0234930:CDS
TTGGAATGCATGCTCAAGTC+GGG 0.491946 2_2:-7700405 Msa0234930:CDS
TATCTTCTTATCCGGATGGT+TGG 0.493487 2_2:-7702176 Msa0234930:five_prime_UTR
GTTGGAATTAGTAGCACAAA+GGG 0.494468 2_2:-7701809 Msa0234930:CDS
TTTCTATCTCGCATCCTGCT+CGG 0.495735 2_2:-7700492 Msa0234930:CDS
GGTGTCAAGGCATTTGAGCC+AGG 0.499700 2_2:-7700640 Msa0234930:CDS
TCACTTGGTTGATGTGCTGT+TGG 0.502545 2_2:-7700557 Msa0234930:CDS
AGCTCTCACTGAGGGTGTCA+AGG 0.503283 2_2:-7700653 Msa0234930:CDS
CCTATTGGCCTCCAACCATC+CGG 0.505617 2_2:+7702165 None:intergenic
GAGTGTGTGAGTGGAAGGGT+TGG 0.517304 2_2:+7701987 None:intergenic
CCTGAATCTATTGACTCCAA+TGG 0.518336 2_2:+7700040 None:intergenic
CAGGGAAATCAACTACGGTT+AGG 0.519735 2_2:-7700885 Msa0234930:CDS
TGCTCAAGTCGGGACTGTTA+GGG 0.522981 2_2:-7700395 Msa0234930:CDS
CTTGAGACACCGTCTTAGAA+AGG 0.523882 2_2:-7700065 Msa0234930:CDS
TGGATTCTGCTGCATCAGGT+TGG 0.525455 2_2:-7700537 Msa0234930:CDS
GAATTTAACCTTTCCTATGG+CGG 0.526063 2_2:-7699910 Msa0234930:three_prime_UTR
ATTAGGAGCTACAGAAGATA+GGG 0.526401 2_2:-7700701 Msa0234930:CDS
TGGTTATGTGTTGTAGTAAG+GGG 0.530247 2_2:-7699776 Msa0234930:three_prime_UTR
AGAGACTTACAAAGCCGAGC+AGG 0.533133 2_2:-7700305 Msa0234930:CDS
GGTTCGGGAAATCCTGAAGA+AGG 0.534941 2_2:-7700457 Msa0234930:CDS
TTGGAGGTGTAATGATTATG+GGG 0.535125 2_2:-7700918 Msa0234930:CDS
TTAGCTTTAGCTAATAGTCC+TGG 0.538067 2_2:+7700622 None:intergenic
GGTTGGAAGAAGGAGAAGAA+AGG 0.540036 2_2:+7702004 None:intergenic
CAATATCCTCTACAGTCACT+TGG 0.541710 2_2:+7700107 None:intergenic
TGTGCAGAGTTGAATGTGGA+TGG 0.543317 2_2:-7700193 Msa0234930:CDS
CTATTAGCTAAAGCTAATAG+AGG 0.543722 2_2:-7700616 Msa0234930:CDS
TGAGTGGAAGGGTTGGAAGA+AGG 0.543842 2_2:+7701994 None:intergenic
TAAATAAATATTATAAGAGA+AGG 0.545235 2_2:+7699809 None:intergenic
CACACACTCTCTTTAAGCTC+AGG 0.546920 2_2:-7701973 Msa0234930:intron
ATGGTTATGTGTTGTAGTAA+GGG 0.551998 2_2:-7699777 Msa0234930:three_prime_UTR
CCAAATTGATCAAGATCTCA+AGG 0.555254 2_2:-7700233 Msa0234930:CDS
GGAGAAGAAAGGTAACGTGA+AGG 0.556964 2_2:+7702015 None:intergenic
CATAAAATCCGCCATAGGAA+AGG 0.562276 2_2:+7699902 None:intergenic
GCTACAGAAGATAGGGTATG+TGG 0.565619 2_2:-7700694 Msa0234930:CDS
TATCTATCTTCTTATCCGGA+TGG 0.566754 2_2:-7702180 Msa0234930:five_prime_UTR
TTGGAACACAGTGGAGAGAG+AGG 0.569168 2_2:-7700518 Msa0234930:CDS
CCAGAAGATCCAGAAGTCAT+GGG 0.571144 2_2:-7700802 Msa0234930:CDS
CCAATTAAGATAAACCGAGC+AGG 0.575699 2_2:+7700478 None:intergenic
ATATAACAGTTTGTCTGCTG+TGG 0.577669 2_2:-7699962 Msa0234930:three_prime_UTR
GTCCAACTATAGCAGCAAAA+GGG 0.581894 2_2:+7700989 None:intergenic
CCGTCTTAGAAAGGATCCAT+TGG 0.583615 2_2:-7700056 Msa0234930:CDS
GTTCGGGAAATCCTGAAGAA+GGG 0.590838 2_2:-7700456 Msa0234930:CDS
TCTCAAGGTGAAAATCTCTA+GGG 0.593212 2_2:-7700218 Msa0234930:CDS
GGTTATGTGTTGTAGTAAGG+GGG 0.593356 2_2:-7699775 Msa0234930:three_prime_UTR
CCAAATCTATCTAATAGTTG+TGG 0.593953 2_2:+7700424 None:intergenic
TTCTACAGAGTTAACTTCAG+TGG 0.594027 2_2:+7701757 None:intergenic
GTGATTGATCCAAAGATTGG+AGG 0.596512 2_2:-7700934 Msa0234930:CDS
ACTATGTCTTCTACAACACT+AGG 0.601368 2_2:-7702060 Msa0234930:CDS
AAGACCATAAAATCCGCCAT+AGG 0.602662 2_2:+7699897 None:intergenic
AAGAGAGTGTGTGAGTGGAA+GGG 0.605818 2_2:+7701983 None:intergenic
CCAATGGATCCTTTCTAAGA+CGG 0.606040 2_2:+7700056 None:intergenic
GTAGCACAAAGGGAAAGTCT+AGG 0.606575 2_2:-7701799 Msa0234930:CDS
AAGAGACCAAGTGACTGTAG+AGG 0.612252 2_2:-7700113 Msa0234930:CDS
TTCGGGAAATCCTGAAGAAG+GGG 0.616573 2_2:-7700455 Msa0234930:CDS
GCTTAAAGAGAGTGTGTGAG+TGG 0.619697 2_2:+7701978 None:intergenic
TTTGGAATGCATGCTCAAGT+CGG 0.624410 2_2:-7700406 Msa0234930:CDS
TTGAATGTGGATGGATTGAG+AGG 0.624939 2_2:-7700184 Msa0234930:CDS
CAGATCAAATTACCTCGGCA+AGG 0.628152 2_2:-7700273 Msa0234930:CDS
CGAAAGTATCTTCCTTGCCG+AGG 0.629459 2_2:+7700261 None:intergenic
ACGTGAAGGAAGAAATGCAA+TGG 0.631404 2_2:+7702029 None:intergenic
AGTTGGAATTAGTAGCACAA+AGG 0.634276 2_2:-7701810 Msa0234930:CDS
TGGAGGTGTAATGATTATGG+GGG 0.635560 2_2:-7700917 Msa0234930:CDS
TAGGTTTGACAAGAATCCAA+AGG 0.644338 2_2:-7700335 Msa0234930:CDS
AGGAACAGGGAAATCAACTA+CGG 0.645219 2_2:-7700890 Msa0234930:CDS
TGGAACACAGTGGAGAGAGA+GGG 0.656944 2_2:-7700517 Msa0234930:CDS
GAGAGATCGAGTTATAAAAG+GGG 0.661074 2_2:-7700770 Msa0234930:CDS
GCTGAGAGTGAAGATTGTAG+AGG 0.661411 2_2:-7700365 Msa0234930:CDS
TGTAGTAAGAAGCTTTATGG+AGG 0.665312 2_2:-7701833 Msa0234930:CDS
GCTCACAGATCAAATTACCT+CGG 0.673145 2_2:-7700278 Msa0234930:CDS
AGGAATCTTATATGTTGACG+AGG 0.675249 2_2:-7700596 Msa0234930:CDS
ATAGCAGCAAAAGGGTACAC+CGG 0.687026 2_2:+7700997 None:intergenic
CTATTTCTAAAGAAAGCGCG+AGG 0.690036 2_2:-7701020 Msa0234930:CDS
GGTGTGTGCAGAGTTGAATG+TGG 0.691143 2_2:-7700197 Msa0234930:CDS
CAGTGGCAACATTAACAACA+GGG 0.692478 2_2:+7701774 None:intergenic
TGTGTTGAGCAAAATCAACA+TGG 0.720795 2_2:-7700734 Msa0234930:CDS
TGCATCAGGTTGGAACACAG+TGG 0.734702 2_2:-7700527 Msa0234930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATTATAAGAGA+AGG + chr2_2:7702151-7702170 None:intergenic 10.0%
!!! TATTCTATTTTAGCAAATTA+TGG - chr2_2:7700247-7700266 Msa0234930:CDS 15.0%
!! TAAACTTATATAAGTATGTT+TGG - chr2_2:7700334-7700353 Msa0234930:CDS 15.0%
!!! CGTTATTTTATCTTTTATTA+TGG - chr2_2:7700525-7700544 Msa0234930:CDS 15.0%
!!! ACTCAAGTTTATTTGTTTTA+TGG + chr2_2:7699832-7699851 None:intergenic 20.0%
!! TTCTCAGATAAAATAAGATT+AGG + chr2_2:7700741-7700760 None:intergenic 20.0%
!! TTCATAAATTTCTTGTATAC+AGG - chr2_2:7702098-7702117 Msa0234930:five_prime_UTR 20.0%
!! TATTTATTTATAGCCTGATA+TGG - chr2_2:7702161-7702180 Msa0234930:five_prime_UTR 20.0%
! AATCTATCTATCTTCTTATC+CGG - chr2_2:7699773-7699792 Msa0234930:three_prime_UTR 25.0%
!!! TTTATTTGTTTTATGGCAGA+TGG + chr2_2:7699825-7699844 None:intergenic 25.0%
! AAGTTGTTTATCCAAACAAT+AGG - chr2_2:7700593-7700612 Msa0234930:CDS 25.0%
! AGTTGTTTATCCAAACAATA+GGG - chr2_2:7700594-7700613 Msa0234930:CDS 25.0%
! ACTTAAATGAGAATGCTTTA+AGG + chr2_2:7700667-7700686 None:intergenic 25.0%
! TTGTAAGTTGTAACACTTAT+AGG + chr2_2:7700767-7700786 None:intergenic 25.0%
! TGCATGAAATTAGTATACTT+TGG + chr2_2:7700806-7700825 None:intergenic 25.0%
! ACTAATTTCATGCATTTGTT+AGG - chr2_2:7700812-7700831 Msa0234930:CDS 25.0%
! TTCTTAGACGTAAATGATTA+GGG - chr2_2:7700835-7700854 Msa0234930:CDS 25.0%
! TTAGAATTTAACCTTTCCTA+TGG - chr2_2:7702044-7702063 Msa0234930:CDS 25.0%
!!! GACTGTTTTAAGTAAATACT+TGG + chr2_2:7702129-7702148 None:intergenic 25.0%
!! TTTCCTTGCTTTTCTTGTTT+TGG - chr2_2:7700047-7700066 Msa0234930:CDS 30.0%
TTTGGACATTATGTGATTGT+TGG - chr2_2:7700065-7700084 Msa0234930:CDS 30.0%
ATTGAAATGTTGTCTTTGCA+GGG - chr2_2:7700095-7700114 Msa0234930:CDS 30.0%
AACTGTAGTAAGAAGCTTTA+TGG - chr2_2:7700121-7700140 Msa0234930:CDS 30.0%
TTAAATATGTGCAATGTGCA+AGG + chr2_2:7700317-7700336 None:intergenic 30.0%
CTATCCACATATCAAGTATT+TGG + chr2_2:7700621-7700640 None:intergenic 30.0%
ACTTACAAGCTAATTCAAAC+TGG - chr2_2:7700779-7700798 Msa0234930:CDS 30.0%
GTTCTTAGACGTAAATGATT+AGG - chr2_2:7700834-7700853 Msa0234930:CDS 30.0%
TAGAAATAGTATTCAGACTC+TGG + chr2_2:7700926-7700945 None:intergenic 30.0%
! ATTGGAGGTGTAATGATTAT+GGG - chr2_2:7701038-7701057 Msa0234930:intron 30.0%
TGAGAGATCGAGTTATAAAA+GGG - chr2_2:7701186-7701205 Msa0234930:intron 30.0%
CTATTAGCTAAAGCTAATAG+AGG - chr2_2:7701341-7701360 Msa0234930:intron 30.0%
! TAATCTTTTGGATGATCACT+TGG - chr2_2:7701385-7701404 Msa0234930:intron 30.0%
TCGGTTTATCTTAATTGGTT+CGG - chr2_2:7701484-7701503 Msa0234930:intron 30.0%
CCAAATCTATCTAATAGTTG+TGG + chr2_2:7701536-7701555 None:intergenic 30.0%
CCACAACTATTAGATAGATT+TGG - chr2_2:7701533-7701552 Msa0234930:intron 30.0%
TATGGTTATGTGTTGTAGTA+AGG - chr2_2:7702179-7702198 Msa0234930:five_prime_UTR 30.0%
ATGGTTATGTGTTGTAGTAA+GGG - chr2_2:7702180-7702199 Msa0234930:five_prime_UTR 30.0%
TATCTATCTTCTTATCCGGA+TGG - chr2_2:7699777-7699796 Msa0234930:three_prime_UTR 35.0%
GTTGTAGAAGACATAGTTGA+AGG + chr2_2:7699894-7699913 None:intergenic 35.0%
ACTATGTCTTCTACAACACT+AGG - chr2_2:7699897-7699916 Msa0234930:three_prime_UTR 35.0%
TGTCCAAAACAAGAAAAGCA+AGG + chr2_2:7700053-7700072 None:intergenic 35.0%
CATTGAAATGTTGTCTTTGC+AGG - chr2_2:7700094-7700113 Msa0234930:CDS 35.0%
! TGTAGTAAGAAGCTTTATGG+AGG - chr2_2:7700124-7700143 Msa0234930:CDS 35.0%
AGTTGGAATTAGTAGCACAA+AGG - chr2_2:7700147-7700166 Msa0234930:CDS 35.0%
GTTGGAATTAGTAGCACAAA+GGG - chr2_2:7700148-7700167 Msa0234930:CDS 35.0%
TTCTACAGAGTTAACTTCAG+TGG + chr2_2:7700203-7700222 None:intergenic 35.0%
TGAAGTTAACTCTGTAGAAC+AGG - chr2_2:7700204-7700223 Msa0234930:CDS 35.0%
TAAACACTGATGCAACTGTT+TGG - chr2_2:7700386-7700405 Msa0234930:CDS 35.0%
AAACACTGATGCAACTGTTT+GGG - chr2_2:7700387-7700406 Msa0234930:CDS 35.0%
AGTATTTGGACCCTATTGTT+TGG + chr2_2:7700607-7700626 None:intergenic 35.0%
TCTTTGGATCAATCACGTTA+AGG + chr2_2:7701019-7701038 None:intergenic 35.0%
AACGTGATTGATCCAAAGAT+TGG - chr2_2:7701020-7701039 Msa0234930:CDS 35.0%
ATCATTACACCTCCAATCTT+TGG + chr2_2:7701035-7701054 None:intergenic 35.0%
! GATTGGAGGTGTAATGATTA+TGG - chr2_2:7701037-7701056 Msa0234930:intron 35.0%
! TTGGAGGTGTAATGATTATG+GGG - chr2_2:7701039-7701058 Msa0234930:intron 35.0%
GTGAGAGATCGAGTTATAAA+AGG - chr2_2:7701185-7701204 Msa0234930:intron 35.0%
GAGAGATCGAGTTATAAAAG+GGG - chr2_2:7701187-7701206 Msa0234930:intron 35.0%
!! GTTGATTTTGCTCAACACAA+TGG + chr2_2:7701222-7701241 None:intergenic 35.0%
TGTGTTGAGCAAAATCAACA+TGG - chr2_2:7701223-7701242 Msa0234930:intron 35.0%
!! AACATGGTTGATTTGCCATT+AGG - chr2_2:7701239-7701258 Msa0234930:intron 35.0%
ATTAGGAGCTACAGAAGATA+GGG - chr2_2:7701256-7701275 Msa0234930:intron 35.0%
ATTGAAAAAGCTCTCACTGA+GGG - chr2_2:7701296-7701315 Msa0234930:intron 35.0%
!! TTAGCTTTAGCTAATAGTCC+TGG + chr2_2:7701338-7701357 None:intergenic 35.0%
AGGAATCTTATATGTTGACG+AGG - chr2_2:7701361-7701380 Msa0234930:intron 35.0%
! TGTTGACGAGGTTAATCTTT+TGG - chr2_2:7701373-7701392 Msa0234930:intron 35.0%
! CGGTTTATCTTAATTGGTTC+GGG - chr2_2:7701485-7701504 Msa0234930:intron 35.0%
TAGGTTTGACAAGAATCCAA+AGG - chr2_2:7701622-7701641 Msa0234930:intron 35.0%
TAAGTCTCTCGAAATTCCTT+TGG + chr2_2:7701641-7701660 None:intergenic 35.0%
CCTTGAGATCTTGATCAATT+TGG + chr2_2:7701727-7701746 None:intergenic 35.0%
CCAAATTGATCAAGATCTCA+AGG - chr2_2:7701724-7701743 Msa0234930:intron 35.0%
ATCTCAAGGTGAAAATCTCT+AGG - chr2_2:7701738-7701757 Msa0234930:intron 35.0%
TCTCAAGGTGAAAATCTCTA+GGG - chr2_2:7701739-7701758 Msa0234930:intron 35.0%
ATATAACAGTTTGTCTGCTG+TGG - chr2_2:7701995-7702014 Msa0234930:CDS 35.0%
GAATTTAACCTTTCCTATGG+CGG - chr2_2:7702047-7702066 Msa0234930:CDS 35.0%
CTACAACACATAACCATATC+AGG + chr2_2:7702177-7702196 None:intergenic 35.0%
TGGTTATGTGTTGTAGTAAG+GGG - chr2_2:7702181-7702200 Msa0234930:five_prime_UTR 35.0%
TATCTTCTTATCCGGATGGT+TGG - chr2_2:7699781-7699800 Msa0234930:three_prime_UTR 40.0%
ACGTGAAGGAAGAAATGCAA+TGG + chr2_2:7699931-7699950 None:intergenic 40.0%
! AAGAAGCTTTATGGAGGAGT+TGG - chr2_2:7700130-7700149 Msa0234930:CDS 40.0%
CAGTGGCAACATTAACAACA+GGG + chr2_2:7700186-7700205 None:intergenic 40.0%
TCAGTGGCAACATTAACAAC+AGG + chr2_2:7700187-7700206 None:intergenic 40.0%
GGGTCCAAATACTTGATATG+TGG - chr2_2:7700614-7700633 Msa0234930:CDS 40.0%
GACGTAAATGATTAGGGTCT+TGG - chr2_2:7700841-7700860 Msa0234930:CDS 40.0%
GGACATCAAAAGTTCAGAGT+TGG + chr2_2:7700905-7700924 None:intergenic 40.0%
!! CTATTTCTAAAGAAAGCGCG+AGG - chr2_2:7700937-7700956 Msa0234930:CDS 40.0%
! TACCCTTTTGCTGCTATAGT+TGG - chr2_2:7700966-7700985 Msa0234930:CDS 40.0%
GTCCAACTATAGCAGCAAAA+GGG + chr2_2:7700971-7700990 None:intergenic 40.0%
TGTCCAACTATAGCAGCAAA+AGG + chr2_2:7700972-7700991 None:intergenic 40.0%
! TTTTGCTGCTATAGTTGGAC+AGG - chr2_2:7700971-7700990 Msa0234930:CDS 40.0%
GTGATTGATCCAAAGATTGG+AGG - chr2_2:7701023-7701042 Msa0234930:CDS 40.0%
! TGGAGGTGTAATGATTATGG+GGG - chr2_2:7701040-7701059 Msa0234930:intron 40.0%
GTAATGATTATGGGGGATAG+AGG - chr2_2:7701047-7701066 Msa0234930:intron 40.0%
AGGAACAGGGAAATCAACTA+CGG - chr2_2:7701067-7701086 Msa0234930:intron 40.0%
ATCAACTACGGTTAGGTCAT+TGG - chr2_2:7701079-7701098 Msa0234930:intron 40.0%
CGATTTACTTCCTGAGATCA+AGG - chr2_2:7701103-7701122 Msa0234930:intron 40.0%
CCAAAAACAACCTTGATCTC+AGG + chr2_2:7701116-7701135 None:intergenic 40.0%
!! CCTGAGATCAAGGTTGTTTT+TGG - chr2_2:7701113-7701132 Msa0234930:intron 40.0%
TCTTCTGGGTCTGAGTTATA+TGG + chr2_2:7701143-7701162 None:intergenic 40.0%
CTATCTTCTGTAGCTCCTAA+TGG + chr2_2:7701257-7701276 None:intergenic 40.0%
CATTAGGAGCTACAGAAGAT+AGG - chr2_2:7701255-7701274 Msa0234930:intron 40.0%
CATTGAAAAAGCTCTCACTG+AGG - chr2_2:7701295-7701314 Msa0234930:intron 40.0%
CCAATTAAGATAAACCGAGC+AGG + chr2_2:7701482-7701501 None:intergenic 40.0%
CCTGCTCGGTTTATCTTAAT+TGG - chr2_2:7701479-7701498 Msa0234930:intron 40.0%
! TTTGGAATGCATGCTCAAGT+CGG - chr2_2:7701551-7701570 Msa0234930:intron 40.0%
GCTCACAGATCAAATTACCT+CGG - chr2_2:7701679-7701698 Msa0234930:intron 40.0%
!! TTGAATGTGGATGGATTGAG+AGG - chr2_2:7701773-7701792 Msa0234930:CDS 40.0%
AAACAGAGCTGCTAAAGCTT+TGG - chr2_2:7701808-7701827 Msa0234930:CDS 40.0%
! TAAAGCTTTGGCTGCTCTTA+AGG - chr2_2:7701820-7701839 Msa0234930:CDS 40.0%
! AAAGCTTTGGCTGCTCTTAA+GGG - chr2_2:7701821-7701840 Msa0234930:CDS 40.0%
CAATATCCTCTACAGTCACT+TGG + chr2_2:7701853-7701872 None:intergenic 40.0%
! CCAATGGATCCTTTCTAAGA+CGG + chr2_2:7701904-7701923 None:intergenic 40.0%
!! CCTGAATCTATTGACTCCAA+TGG + chr2_2:7701920-7701939 None:intergenic 40.0%
CCATTGGAGTCAATAGATTC+AGG - chr2_2:7701917-7701936 Msa0234930:intron 40.0%
CATAAAATCCGCCATAGGAA+AGG + chr2_2:7702058-7702077 None:intergenic 40.0%
!!! CTTTCCTATGGCGGATTTTA+TGG - chr2_2:7702056-7702075 Msa0234930:CDS 40.0%
AAGACCATAAAATCCGCCAT+AGG + chr2_2:7702063-7702082 None:intergenic 40.0%
GGTTATGTGTTGTAGTAAGG+GGG - chr2_2:7702182-7702201 Msa0234930:five_prime_UTR 40.0%
GGAGAAGAAAGGTAACGTGA+AGG + chr2_2:7699945-7699964 None:intergenic 45.0%
GGTTGGAAGAAGGAGAAGAA+AGG + chr2_2:7699956-7699975 None:intergenic 45.0%
! AAGAGAGTGTGTGAGTGGAA+GGG + chr2_2:7699977-7699996 None:intergenic 45.0%
! AAAGAGAGTGTGTGAGTGGA+AGG + chr2_2:7699978-7699997 None:intergenic 45.0%
! GCTTAAAGAGAGTGTGTGAG+TGG + chr2_2:7699982-7700001 None:intergenic 45.0%
CACACACTCTCTTTAAGCTC+AGG - chr2_2:7699984-7700003 Msa0234930:exon 45.0%
GTAGCACAAAGGGAAAGTCT+AGG - chr2_2:7700158-7700177 Msa0234930:CDS 45.0%
! TGTAGAACAGGTACTGTTGC+TGG - chr2_2:7700216-7700235 Msa0234930:CDS 45.0%
CAACTGTTTGGGAGAGCTTA+TGG - chr2_2:7700398-7700417 Msa0234930:CDS 45.0%
! ATAGCAGCAAAAGGGTACAC+CGG + chr2_2:7700963-7700982 None:intergenic 45.0%
ATTATGGGGGATAGAGGAAC+AGG - chr2_2:7701053-7701072 Msa0234930:intron 45.0%
TTATGGGGGATAGAGGAACA+GGG - chr2_2:7701054-7701073 Msa0234930:intron 45.0%
CAGGGAAATCAACTACGGTT+AGG - chr2_2:7701072-7701091 Msa0234930:intron 45.0%
CCATGACTTCTGGATCTTCT+GGG + chr2_2:7701157-7701176 None:intergenic 45.0%
CCAGAAGATCCAGAAGTCAT+GGG - chr2_2:7701155-7701174 Msa0234930:intron 45.0%
ACTTCTACTCCCATGACTTC+TGG + chr2_2:7701167-7701186 None:intergenic 45.0%
GCTACAGAAGATAGGGTATG+TGG - chr2_2:7701263-7701282 Msa0234930:intron 45.0%
! TCACTTGGTTGATGTGCTGT+TGG - chr2_2:7701400-7701419 Msa0234930:intron 45.0%
TTTCTATCTCGCATCCTGCT+CGG - chr2_2:7701465-7701484 Msa0234930:intron 45.0%
GTTCGGGAAATCCTGAAGAA+GGG - chr2_2:7701501-7701520 Msa0234930:intron 45.0%
TTCGGGAAATCCTGAAGAAG+GGG - chr2_2:7701502-7701521 Msa0234930:intron 45.0%
TTGGAATGCATGCTCAAGTC+GGG - chr2_2:7701552-7701571 Msa0234930:intron 45.0%
GCTGAGAGTGAAGATTGTAG+AGG - chr2_2:7701592-7701611 Msa0234930:intron 45.0%
AGATTGTAGAGGAGAGAGCT+AGG - chr2_2:7701603-7701622 Msa0234930:intron 45.0%
CAGATCAAATTACCTCGGCA+AGG - chr2_2:7701684-7701703 Msa0234930:intron 45.0%
TGTGCAGAGTTGAATGTGGA+TGG - chr2_2:7701764-7701783 Msa0234930:CDS 45.0%
AAGAGACCAAGTGACTGTAG+AGG - chr2_2:7701844-7701863 Msa0234930:CDS 45.0%
CTTGAGACACCGTCTTAGAA+AGG - chr2_2:7701892-7701911 Msa0234930:intron 45.0%
CCGTCTTAGAAAGGATCCAT+TGG - chr2_2:7701901-7701920 Msa0234930:intron 45.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr2_2:7699731-7699750 Msa0234930:three_prime_UTR 50.0%
CTTCTTATCCGGATGGTTGG+AGG - chr2_2:7699784-7699803 Msa0234930:three_prime_UTR 50.0%
GCAGATGGCATGCTTCCTAT+TGG + chr2_2:7699810-7699829 None:intergenic 50.0%
TGAGTGGAAGGGTTGGAAGA+AGG + chr2_2:7699966-7699985 None:intergenic 50.0%
! TTCTAAAGAAAGCGCGAGGC+CGG - chr2_2:7700941-7700960 Msa0234930:CDS 50.0%
CCCAGAAGATCCAGAAGTCA+TGG - chr2_2:7701154-7701173 Msa0234930:intron 50.0%
CCCATGACTTCTGGATCTTC+TGG + chr2_2:7701158-7701177 None:intergenic 50.0%
CTGTTGGATTCTGCTGCATC+AGG - chr2_2:7701416-7701435 Msa0234930:intron 50.0%
TGGATTCTGCTGCATCAGGT+TGG - chr2_2:7701420-7701439 Msa0234930:intron 50.0%
!! TGCATCAGGTTGGAACACAG+TGG - chr2_2:7701430-7701449 Msa0234930:intron 50.0%
TTGGAACACAGTGGAGAGAG+AGG - chr2_2:7701439-7701458 Msa0234930:intron 50.0%
TGGAACACAGTGGAGAGAGA+GGG - chr2_2:7701440-7701459 Msa0234930:intron 50.0%
GGTTCGGGAAATCCTGAAGA+AGG - chr2_2:7701500-7701519 Msa0234930:intron 50.0%
ATGCTCAAGTCGGGACTGTT+AGG - chr2_2:7701561-7701580 Msa0234930:intron 50.0%
TGCTCAAGTCGGGACTGTTA+GGG - chr2_2:7701562-7701581 Msa0234930:intron 50.0%
AGAGACTTACAAAGCCGAGC+AGG - chr2_2:7701652-7701671 Msa0234930:intron 50.0%
ATCTGTGAGCTTCTCCTGCT+CGG + chr2_2:7701669-7701688 None:intergenic 50.0%
!! CGAAAGTATCTTCCTTGCCG+AGG + chr2_2:7701699-7701718 None:intergenic 50.0%
GGTGTGTGCAGAGTTGAATG+TGG - chr2_2:7701760-7701779 Msa0234930:CDS 50.0%
GACGGTGTCTCAAGCAGTTA+GGG + chr2_2:7701886-7701905 None:intergenic 50.0%
AGACGGTGTCTCAAGCAGTT+AGG + chr2_2:7701887-7701906 None:intergenic 50.0%
! CCTATTGGCCTCCAACCATC+CGG + chr2_2:7699795-7699814 None:intergenic 55.0%
GAGTGTGTGAGTGGAAGGGT+TGG + chr2_2:7699973-7699992 None:intergenic 55.0%
!! AGCTCTCACTGAGGGTGTCA+AGG - chr2_2:7701304-7701323 Msa0234930:intron 55.0%
! GGTGTCAAGGCATTTGAGCC+AGG - chr2_2:7701317-7701336 Msa0234930:intron 55.0%
ATCCTGAAGAAGGGGAGCTC+AGG - chr2_2:7701510-7701529 Msa0234930:intron 55.0%
CCGGATGGTTGGAGGCCAAT+AGG - chr2_2:7699792-7699811 Msa0234930:three_prime_UTR 60.0%
GGCCTGAGCTCCCCTTCTTC+AGG + chr2_2:7701515-7701534 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 7699730 7702249 7699730 ID=Msa0234930;Name=Msa0234930
chr2_2 mRNA 7699730 7702249 7699730 ID=Msa0234930-mRNA-1;Parent=Msa0234930;Name=Msa0234930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|3|270|422
chr2_2 exon 7699730 7701052 7699730 ID=Msa0234930-mRNA-1:exon:3392;Parent=Msa0234930-mRNA-1
chr2_2 exon 7701754 7701863 7701754 ID=Msa0234930-mRNA-1:exon:3391;Parent=Msa0234930-mRNA-1
chr2_2 exon 7701974 7702249 7701974 ID=Msa0234930-mRNA-1:exon:3390;Parent=Msa0234930-mRNA-1
chr2_2 five_prime_UTR 7702080 7702249 7702080 ID=Msa0234930-mRNA-1:five_prime_utr;Parent=Msa0234930-mRNA-1
chr2_2 CDS 7701974 7702079 7701974 ID=Msa0234930-mRNA-1:cds;Parent=Msa0234930-mRNA-1
chr2_2 CDS 7701754 7701863 7701754 ID=Msa0234930-mRNA-1:cds;Parent=Msa0234930-mRNA-1
chr2_2 CDS 7700000 7701052 7700000 ID=Msa0234930-mRNA-1:cds;Parent=Msa0234930-mRNA-1
chr2_2 three_prime_UTR 7699730 7699999 7699730 ID=Msa0234930-mRNA-1:three_prime_utr;Parent=Msa0234930-mRNA-1
Gene Sequence

>Msa0234930

ATGTCTTCTACAACACTAGGCACTTCTTCCATTGCATTTCTTCCTTCACGTTACCTTTCTTCTCCTTCTTCCAACCCTTCCACTCACACACTCTCTTTAAGCTCAGGGCAAAACTGTAGTAAGAAGCTTTATGGAGGAGTTGGAATTAGTAGCACAAAGGGAAAGTCTAGGTTCCCTGTTGTTAATGTTGCCACTGAAGTTAACTCTGTAGAACAGAGTCTGAATACTATTTCTAAAGAAAGCGCGAGGCCGGTGTACCCTTTTGCTGCTATAGTTGGACAGGATGAGATGAAGCTTTGTCTTCTCCTTAACGTGATTGATCCAAAGATTGGAGGTGTAATGATTATGGGGGATAGAGGAACAGGGAAATCAACTACGGTTAGGTCATTGGTCGATTTACTTCCTGAGATCAAGGTTGTTTTTGGTGATCCATATAACTCAGACCCAGAAGATCCAGAAGTCATGGGAGTAGAAGTGAGAGATCGAGTTATAAAAGGGGAGCAACTTTCCATTGTGTTGAGCAAAATCAACATGGTTGATTTGCCATTAGGAGCTACAGAAGATAGGGTATGTGGAACGATTGACATTGAAAAAGCTCTCACTGAGGGTGTCAAGGCATTTGAGCCAGGACTATTAGCTAAAGCTAATAGAGGAATCTTATATGTTGACGAGGTTAATCTTTTGGATGATCACTTGGTTGATGTGCTGTTGGATTCTGCTGCATCAGGTTGGAACACAGTGGAGAGAGAGGGTATTTCTATCTCGCATCCTGCTCGGTTTATCTTAATTGGTTCGGGAAATCCTGAAGAAGGGGAGCTCAGGCCACAACTATTAGATAGATTTGGAATGCATGCTCAAGTCGGGACTGTTAGGGATGCTGAGCTGAGAGTGAAGATTGTAGAGGAGAGAGCTAGGTTTGACAAGAATCCAAAGGAATTTCGAGAGACTTACAAAGCCGAGCAGGAGAAGCTCACAGATCAAATTACCTCGGCAAGGAAGATACTTTCGTCTGTCCAAATTGATCAAGATCTCAAGGTGAAAATCTCTAGGGTGTGTGCAGAGTTGAATGTGGATGGATTGAGAGGAGACATAGTATCAAACAGAGCTGCTAAAGCTTTGGCTGCTCTTAAGGGAAGAGACCAAGTGACTGTAGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGTCTTAGAAAGGATCCATTGGAGTCAATAGATTCAGGTTTACTTGTTACAGAGAAATTTTATGAAGTATTCAGCTGA

Protein sequence

>Msa0234930

MSSTTLGTSSIAFLPSRYLSSPSSNPSTHTLSLSSGQNCSKKLYGGVGISSTKGKSRFPVVNVATEVNSVEQSLNTISKESARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVFGDPYNSDPEDPEVMGVEVRDRVIKGEQLSIVLSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDKNPKEFRETYKAEQEKLTDQITSARKILSSVQIDQDLKVKISRVCAELNVDGLRGDIVSNRAAKALAALKGRDQVTVEDIATVIPNCLRHRLRKDPLESIDSGLLVTEKFYEVFS*