AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250670 MtrunA17_Chr8g0365881 96.319 163 3 1 27 186 166 328 9.72e-114 326
Msa1250670 MtrunA17_Chr8g0364141 72.881 59 16 0 103 161 8 66 4.98e-24 92.4
Msa1250670 MtrunA17_Chr4g0055741 26.415 159 113 2 26 180 140 298 9.47e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250670 AT1G60550.1 87.117 163 18 1 27 186 175 337 1.53e-103 301
Msa1250670 AT4G16800.1 27.673 159 111 2 26 180 141 299 5.31e-13 66.2

Find 90 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCAATTACTGGTTT+TGG 0.240337 8_2:+46422687 None:intergenic
GGCTGTTGAAGCAGAGAAAA+TGG 0.259099 8_2:-46422168 Msa1250670:CDS
CCTTAATGTGTTAGACTTGC+AGG 0.280510 8_2:-46423251 Msa1250670:intron
GAGAGTACCATTGCAATTAC+TGG 0.312032 8_2:+46422681 None:intergenic
ATCTATAGAATAAACTGATT+TGG 0.312344 8_2:-46421356 Msa1250670:three_prime_UTR
GCAGCAGATAATGCTATCTT+TGG 0.320415 8_2:-46422522 Msa1250670:CDS
TTCCCTCTCATGATGTTGTT+TGG 0.337790 8_2:-46424166 Msa1250670:five_prime_UTR
TCAAGTTACCAACGTGTTCA+TGG 0.366573 8_2:-46424194 Msa1250670:five_prime_UTR
TGACGGGCACGCTGGACTTC+AGG 0.368255 8_2:-46421694 Msa1250670:intron
AATGCTATCTTTGGCCAAAC+TGG 0.368332 8_2:-46422513 Msa1250670:CDS
CCTGCAAGTCTAACACATTA+AGG 0.368951 8_2:+46423251 None:intergenic
AAATAGCCCAACCGCAATTC+GGG 0.383989 8_2:-46421745 Msa1250670:CDS
GGGAGCTTTGATGCTGGTTA+TGG 0.384393 8_2:-46422351 Msa1250670:CDS
TTATGTCAATTATAGGAAAT+GGG 0.391046 8_2:-46421553 Msa1250670:intron
GTTTCTCACAAGGTTCTATA+CGG 0.403885 8_2:-46422189 Msa1250670:CDS
CCATTGGAGGAATGAGCTAT+AGG 0.417502 8_2:+46424332 None:intergenic
TATTCTGATCATGAAAATAT+CGG 0.418618 8_2:-46423277 Msa1250670:five_prime_UTR
CAGTCATGTTAGTTTATTTG+AGG 0.423324 8_2:-46421328 Msa1250670:three_prime_UTR
GAAATAGCCCAACCGCAATT+CGG 0.424489 8_2:-46421746 Msa1250670:CDS
GCAGGGTACGCTGTTGGAGG+AGG 0.425187 8_2:-46422579 Msa1250670:CDS
GAAGCACCTTAGGACCAGTT+TGG 0.426368 8_2:+46422499 None:intergenic
AGGAGGGCATATATTGCATA+TGG 0.429416 8_2:-46422562 Msa1250670:CDS
CTCTCATGATGTTGTTTGGA+AGG 0.443330 8_2:-46424162 Msa1250670:five_prime_UTR
CATGTTAGTTTATTTGAGGC+TGG 0.445533 8_2:-46421324 Msa1250670:three_prime_UTR
CTAACATTAAAACAGGTAGC+AGG 0.459076 8_2:-46422597 Msa1250670:CDS
ATGTCTTTGTTGTTTGCCAT+TGG 0.461713 8_2:+46424316 None:intergenic
TTTCCTTCATCATCATCAAA+AGG 0.467159 8_2:+46424134 None:intergenic
TTATTTGCTAACATTAAAAC+AGG 0.472547 8_2:-46422604 Msa1250670:CDS
TTGAGAACCCGAATTGCGGT+TGG 0.473250 8_2:+46421738 None:intergenic
CGAAAAGCATTCCTTCTCTC+AGG 0.474072 8_2:+46423947 None:intergenic
ATCATCTTCTTCAATGCCAT+TGG 0.484203 8_2:-46424367 Msa1250670:five_prime_UTR
CTATTAATGCAGTGGATGAC+GGG 0.487601 8_2:-46421710 Msa1250670:CDS
CTGGTACAACAGTATTGATA+AGG 0.497909 8_2:+46422144 None:intergenic
GCTATTAATGCAGTGGATGA+CGG 0.498064 8_2:-46421711 Msa1250670:CDS
AAATAATTTGCAGCTGCTGA+AGG 0.500500 8_2:+46422621 None:intergenic
GATGATGATGATGGTGGGAG+TGG 0.501186 8_2:+46424384 None:intergenic
TGAGAACCCGAATTGCGGTT+GGG 0.503855 8_2:+46421739 None:intergenic
AAGAAACAATCAAATGGTGT+AGG 0.506674 8_2:-46421779 Msa1250670:CDS
TCATGATCAGAATAACCATC+TGG 0.512939 8_2:+46423286 None:intergenic
CTTTGGCCAAACTGGTCCTA+AGG 0.517904 8_2:-46422505 Msa1250670:intron
TTGATGTTGGAGAGGAAACA+AGG 0.525526 8_2:+46424254 None:intergenic
GCTGTTGAAGCAGAGAAAAT+GGG 0.526704 8_2:-46422167 Msa1250670:CDS
GTTGGTGTCATCATTCTCAC+TGG 0.529021 8_2:-46423866 Msa1250670:five_prime_UTR
TCTTTGTTGTTTGCCATTGG+AGG 0.533365 8_2:+46424319 None:intergenic
TGGAGAGGAAACAAGGTGGT+TGG 0.539271 8_2:+46424261 None:intergenic
GGTGGTGGTGATATTGATGT+TGG 0.539487 8_2:+46424241 None:intergenic
AACCGCAATTCGGGTTCTCA+AGG 0.543466 8_2:-46421736 Msa1250670:CDS
TGTAGGATGTGGATAAGATA+AGG 0.550338 8_2:+46424428 None:intergenic
AGAAACAATCAAATGGTGTA+GGG 0.550444 8_2:-46421778 Msa1250670:CDS
AAGGTTGGGAGCTTTGATGC+TGG 0.551127 8_2:-46422357 Msa1250670:CDS
GGCACTGAAGAAGCAAATGA+AGG 0.554741 8_2:-46421505 Msa1250670:CDS
CATCTGGAGTCCTCAAGGCT+TGG 0.556853 8_2:+46423302 None:intergenic
GATAGCATTATCTGCTGCAA+TGG 0.558797 8_2:+46422527 None:intergenic
GAAGAAGATGATGATGATGG+TGG 0.577415 8_2:+46424378 None:intergenic
CCTATAGCTCATTCCTCCAA+TGG 0.577478 8_2:-46424332 Msa1250670:five_prime_UTR
CAAGAAATAAGTTGAGGTGG+TGG 0.578271 8_2:+46424226 None:intergenic
ATAACCATCTGGAGTCCTCA+AGG 0.585989 8_2:+46423297 None:intergenic
TGTTGGTGAAGGAATTGCCA+AGG 0.590568 8_2:-46424081 Msa1250670:intron
GTAGCAGGGTACGCTGTTGG+AGG 0.594520 8_2:-46422582 Msa1250670:CDS
GGAACAGATGCGTTCTGTAG+TGG 0.596532 8_2:-46423331 Msa1250670:five_prime_UTR
GCGAAATGTGGTTTCTCACA+AGG 0.598757 8_2:-46422199 Msa1250670:CDS
ATGATGATGATGGTGGGAGT+GGG 0.599280 8_2:+46424385 None:intergenic
CAAGGCAGCTATTAATGCAG+TGG 0.600034 8_2:-46421718 Msa1250670:CDS
TGTCATCATTCTCACTGGAA+AGG 0.600797 8_2:-46423861 Msa1250670:intron
ATCAGCTCCTTAACCGTGTG+AGG 0.604886 8_2:+46423923 None:intergenic
ATTGTCTATGAGAAATCTGT+TGG 0.606756 8_2:-46424098 Msa1250670:five_prime_UTR
GCTAGAGATGATCCCTCTGT+TGG 0.608696 8_2:-46423884 Msa1250670:five_prime_UTR
TGCCTTGAGAACCCGAATTG+CGG 0.609132 8_2:+46421734 None:intergenic
GCAGTGGATGACGGGCACGC+TGG 0.611049 8_2:-46421702 Msa1250670:CDS
TGTCAATTATAGGAAATGGG+TGG 0.612210 8_2:-46421550 Msa1250670:intron
ATTGAAGAAGATGATGATGA+TGG 0.620517 8_2:+46424375 None:intergenic
CAGGGTACGCTGTTGGAGGA+GGG 0.621828 8_2:-46422578 Msa1250670:CDS
GTGACACAAGAAATAAGTTG+AGG 0.624849 8_2:+46424220 None:intergenic
CTTCCAAACAACATCATGAG+AGG 0.628016 8_2:+46424163 None:intergenic
AAGAAGATGATGATGATGGT+GGG 0.628161 8_2:+46424379 None:intergenic
AGAATGATGACACCAACAGA+GGG 0.629795 8_2:+46423872 None:intergenic
CAAGCCTTGAGGACTCCAGA+TGG 0.630119 8_2:-46423301 Msa1250670:five_prime_UTR
TCCAAAACCAGTAATTGCAA+TGG 0.632257 8_2:-46422688 Msa1250670:exon
TTCCAAACAACATCATGAGA+GGG 0.632661 8_2:+46424164 None:intergenic
TAACATTAAAACAGGTAGCA+GGG 0.634652 8_2:-46422596 Msa1250670:CDS
GAGAATGATGACACCAACAG+AGG 0.638786 8_2:+46423871 None:intergenic
TATGAGAAATCTGTTGGTGA+AGG 0.644857 8_2:-46424092 Msa1250670:five_prime_UTR
GTATTAATAGGCCTGAGAGA+AGG 0.646223 8_2:-46423958 Msa1250670:five_prime_UTR
ACAGATGCGTTCTGTAGTGG+TGG 0.672100 8_2:-46423328 Msa1250670:five_prime_UTR
TGGTGATATTGATGTTGGAG+AGG 0.678621 8_2:+46424246 None:intergenic
GCGTCTTCGCTCCATATATG+CGG 0.682881 8_2:+46421477 None:intergenic
ACACAAGAAATAAGTTGAGG+TGG 0.708597 8_2:+46424223 None:intergenic
GAACATCACCATGAACACGT+TGG 0.725959 8_2:+46424186 None:intergenic
ATGTTGGAGAGGAAACAAGG+TGG 0.769684 8_2:+46424257 None:intergenic
GTGGTGGTGACCAAGCCTTG+AGG 0.785466 8_2:-46423312 Msa1250670:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTGTCTTTAAAATTA+TGG - chr8_2:46422688-46422707 Msa1250670:exon 10.0%
!!! TTTAAAACTGTAAAAATGTT+GGG - chr8_2:46421669-46421688 Msa1250670:intron 15.0%
!! TACAAATGTTAAAATGAAAA+TGG + chr8_2:46423200-46423219 None:intergenic 15.0%
!!! AATTCAACATTGATATTTTA+TGG - chr8_2:46424138-46424157 Msa1250670:five_prime_UTR 15.0%
!! TATTAAACTTAGAAAAATCT+GGG + chr8_2:46424212-46424231 None:intergenic 15.0%
!!! TATAAATGCTTTTGAAATTA+TGG + chr8_2:46424240-46424259 None:intergenic 15.0%
!!! AGTTAATTTTTGTTATCAAT+TGG - chr8_2:46424271-46424290 Msa1250670:five_prime_UTR 15.0%
!!! GTTAATTTTTGTTATCAATT+GGG - chr8_2:46424272-46424291 Msa1250670:five_prime_UTR 15.0%
!!! CTTTAAAACTGTAAAAATGT+TGG - chr8_2:46421668-46421687 Msa1250670:intron 20.0%
!!! TTTTGCAGATTAGTATTAAT+AGG - chr8_2:46421694-46421713 Msa1250670:intron 20.0%
!! ATATGATTAAAGAAAACCAA+CGG + chr8_2:46422025-46422044 None:intergenic 20.0%
!!! TAATGATATATTGATGATGT+AGG - chr8_2:46422311-46422330 Msa1250670:intron 20.0%
!!! AATGATATATTGATGATGTA+GGG - chr8_2:46422312-46422331 Msa1250670:intron 20.0%
!! TATTCTGATCATGAAAATAT+CGG - chr8_2:46422387-46422406 Msa1250670:intron 20.0%
!!! ACAATATATCAGTTTTTCAT+TGG + chr8_2:46422677-46422696 None:intergenic 20.0%
!!! ATTTTTCTCATTACAAATCA+TGG + chr8_2:46422858-46422877 None:intergenic 20.0%
!!! TTATTTGCTAACATTAAAAC+AGG - chr8_2:46423060-46423079 Msa1250670:intron 20.0%
!!! AAGCACATTTTTTTATCTTT+TGG + chr8_2:46423417-46423436 None:intergenic 20.0%
!!! TAATTTTAGTTTCTCCTTTA+AGG - chr8_2:46423583-46423602 Msa1250670:intron 20.0%
!! TAGAAAAAGAAACAATCAAA+TGG - chr8_2:46423879-46423898 Msa1250670:five_prime_UTR 20.0%
!!! TCATTATAAACTTGTTTTAG+TGG - chr8_2:46423997-46424016 Msa1250670:intron 20.0%
!!! GTTGTTTTTATGTCAATTAT+AGG - chr8_2:46424104-46424123 Msa1250670:five_prime_UTR 20.0%
!! TTTATGTCAATTATAGGAAA+TGG - chr8_2:46424110-46424129 Msa1250670:five_prime_UTR 20.0%
!! TTATGTCAATTATAGGAAAT+GGG - chr8_2:46424111-46424130 Msa1250670:five_prime_UTR 20.0%
!! CTATTAAACTTAGAAAAATC+TGG + chr8_2:46424213-46424232 None:intergenic 20.0%
!! ATCTATAGAATAAACTGATT+TGG - chr8_2:46424308-46424327 Msa1250670:five_prime_UTR 20.0%
!!! TTACTTAAGTTTTGTCTTGT+AGG + chr8_2:46421256-46421275 None:intergenic 25.0%
! GCAATGTATTAATCAGTTAA+AGG + chr8_2:46421941-46421960 None:intergenic 25.0%
! TTCACACAAATAGAAAAATC+TGG + chr8_2:46422453-46422472 None:intergenic 25.0%
! AAAGAGATAACTTGAGTAAT+GGG + chr8_2:46422487-46422506 None:intergenic 25.0%
!!! TATCTCTTTGGTTATTTTTG+AGG - chr8_2:46422498-46422517 Msa1250670:intron 25.0%
! TTTCTCAAACAACATTATAC+TGG + chr8_2:46422560-46422579 None:intergenic 25.0%
! AATTTGAGGACTAAATTAAC+CGG + chr8_2:46422616-46422635 None:intergenic 25.0%
! TCTACTAAATTAGAGAACAT+CGG + chr8_2:46422743-46422762 None:intergenic 25.0%
!!! ATTGTTATTTCTCCAATTTG+AGG - chr8_2:46422767-46422786 Msa1250670:intron 25.0%
!!! TTGTTATTTCTCCAATTTGA+GGG - chr8_2:46422768-46422787 Msa1250670:intron 25.0%
! AAGACAGAACAAAAGAAAAA+GGG + chr8_2:46423265-46423284 None:intergenic 25.0%
! AATTCCAAACATAACCTTAA+AGG + chr8_2:46423600-46423619 None:intergenic 25.0%
! TTCATTATCATTGTATTGCA+TGG - chr8_2:46423762-46423781 Msa1250670:intron 25.0%
!!! GTTAATGCAATGTTTTGATT+TGG - chr8_2:46423841-46423860 Msa1250670:intron 25.0%
! ATTGAAGAAGATGATGATGA+TGG + chr8_2:46421292-46421311 None:intergenic 30.0%
TTTCCTTCATCATCATCAAA+AGG + chr8_2:46421533-46421552 None:intergenic 30.0%
!!! TTTTGATGATGATGAAGGAA+AGG - chr8_2:46421532-46421551 Msa1250670:CDS 30.0%
ATTGTCTATGAGAAATCTGT+TGG - chr8_2:46421566-46421585 Msa1250670:intron 30.0%
!! AATTATTAAAGGGCATCTTG+AGG - chr8_2:46421872-46421891 Msa1250670:intron 30.0%
! TTGTTCAAGTGATTTTCCAT+TGG - chr8_2:46421962-46421981 Msa1250670:intron 30.0%
TGCTGATAAAAGAAAACCAA+TGG + chr8_2:46421981-46422000 None:intergenic 30.0%
ATCATATGATGCTTTCAGTA+CGG - chr8_2:46422038-46422057 Msa1250670:intron 30.0%
! GTTTTCAAAACCAAACCATA+CGG - chr8_2:46422073-46422092 Msa1250670:intron 30.0%
ATCCTTAATGCAGAATTGAA+TGG - chr8_2:46422285-46422304 Msa1250670:intron 30.0%
AACCATTCAATTCTGCATTA+AGG + chr8_2:46422290-46422309 None:intergenic 30.0%
CAAAGAGATAACTTGAGTAA+TGG + chr8_2:46422488-46422507 None:intergenic 30.0%
CATTACTCAAGTTATCTCTT+TGG - chr8_2:46422486-46422505 Msa1250670:intron 30.0%
! ATTGGTTTCAACTGATGTTA+GGG + chr8_2:46422659-46422678 None:intergenic 30.0%
AAAATTATGGTGCTTGATTC+TGG - chr8_2:46422701-46422720 Msa1250670:five_prime_UTR 30.0%
! TCATTCTTTTCTCCTATTAC+AGG - chr8_2:46422937-46422956 Msa1250670:intron 30.0%
GTGCACAAAAAAATGAGATT+TGG + chr8_2:46423019-46423038 None:intergenic 30.0%
TAACATTAAAACAGGTAGCA+GGG - chr8_2:46423068-46423087 Msa1250670:intron 30.0%
AGAACAAAAGAAAAAGGGAA+TGG + chr8_2:46423260-46423279 None:intergenic 30.0%
CAAGACAGAACAAAAGAAAA+AGG + chr8_2:46423266-46423285 None:intergenic 30.0%
! ACTTGTCTTTGTATCGATAA+AGG - chr8_2:46423288-46423307 Msa1250670:five_prime_UTR 30.0%
! TCTTTGTATCGATAAAGGTT+GGG - chr8_2:46423293-46423312 Msa1250670:five_prime_UTR 30.0%
AAAAAATGTGCTTCTCATAC+AGG - chr8_2:46423424-46423443 Msa1250670:intron 30.0%
AGGAGAAACTAAAATTACAG+TGG + chr8_2:46423580-46423599 None:intergenic 30.0%
!! TTCTCCTTTAAGGTTATGTT+TGG - chr8_2:46423593-46423612 Msa1250670:intron 30.0%
AAGAAACAATCAAATGGTGT+AGG - chr8_2:46423885-46423904 Msa1250670:five_prime_UTR 30.0%
AGAAACAATCAAATGGTGTA+GGG - chr8_2:46423886-46423905 Msa1250670:five_prime_UTR 30.0%
TATGCATACATATGCTCTAA+GGG + chr8_2:46424078-46424097 None:intergenic 30.0%
ATATGCATACATATGCTCTA+AGG + chr8_2:46424079-46424098 None:intergenic 30.0%
!! TTTTGTTATCAATTGGGACA+TGG - chr8_2:46424278-46424297 Msa1250670:five_prime_UTR 30.0%
! CAGTCATGTTAGTTTATTTG+AGG - chr8_2:46424336-46424355 Msa1250670:five_prime_UTR 30.0%
! TATTTTCTGTGTGTATCAGT+CGG - chr8_2:46424421-46424440 Msa1250670:five_prime_UTR 30.0%
TGTAGGATGTGGATAAGATA+AGG + chr8_2:46421239-46421258 None:intergenic 35.0%
!! AAGTTTTGTCTTGTAGGATG+TGG + chr8_2:46421250-46421269 None:intergenic 35.0%
!! AAGAAGATGATGATGATGGT+GGG + chr8_2:46421288-46421307 None:intergenic 35.0%
ATCATCTTCTTCAATGCCAT+TGG - chr8_2:46421297-46421316 Msa1250670:three_prime_UTR 35.0%
!! ATGTCTTTGTTGTTTGCCAT+TGG + chr8_2:46421351-46421370 None:intergenic 35.0%
! ACACAAGAAATAAGTTGAGG+TGG + chr8_2:46421444-46421463 None:intergenic 35.0%
GTGACACAAGAAATAAGTTG+AGG + chr8_2:46421447-46421466 None:intergenic 35.0%
TTCCAAACAACATCATGAGA+GGG + chr8_2:46421503-46421522 None:intergenic 35.0%
!!! GTTCCTTTTGATGATGATGA+AGG - chr8_2:46421527-46421546 Msa1250670:CDS 35.0%
! TATGAGAAATCTGTTGGTGA+AGG - chr8_2:46421572-46421591 Msa1250670:intron 35.0%
AAAAACGTGAAGCAAAACCT+TGG + chr8_2:46421603-46421622 None:intergenic 35.0%
GTCTTAAGTGACAAACTACA+TGG + chr8_2:46422258-46422277 None:intergenic 35.0%
TCATGATCAGAATAACCATC+TGG + chr8_2:46422381-46422400 None:intergenic 35.0%
!!! TTTTGAGGCATTCGTTTCAA+TGG - chr8_2:46422513-46422532 Msa1250670:CDS 35.0%
TTTGTCCGTCAAATTGTCTA+AGG - chr8_2:46422589-46422608 Msa1250670:CDS 35.0%
TTGTCCGTCAAATTGTCTAA+GGG - chr8_2:46422590-46422609 Msa1250670:CDS 35.0%
TAGTCCTCAAATTCACGAAA+TGG - chr8_2:46422623-46422642 Msa1250670:CDS 35.0%
! ATTGCCATTTCGTGAATTTG+AGG + chr8_2:46422630-46422649 None:intergenic 35.0%
TTGGTTTCAACTGATGTTAG+GGG + chr8_2:46422658-46422677 None:intergenic 35.0%
!! CATTGGTTTCAACTGATGTT+AGG + chr8_2:46422660-46422679 None:intergenic 35.0%
TCCAATTTGAGGGACTAAAT+TGG - chr8_2:46422778-46422797 Msa1250670:intron 35.0%
!!! TTGCAATTACTGGTTTTGGA+AGG + chr8_2:46422976-46422995 None:intergenic 35.0%
TCCAAAACCAGTAATTGCAA+TGG - chr8_2:46422976-46422995 Msa1250670:intron 35.0%
!!! ACCATTGCAATTACTGGTTT+TGG + chr8_2:46422980-46422999 None:intergenic 35.0%
! AAATAATTTGCAGCTGCTGA+AGG + chr8_2:46423046-46423065 None:intergenic 35.0%
CTAACATTAAAACAGGTAGC+AGG - chr8_2:46423067-46423086 Msa1250670:intron 35.0%
! GCAAATTATTGAAGCACCTT+AGG + chr8_2:46423178-46423197 None:intergenic 35.0%
! GTCTTTGTATCGATAAAGGT+TGG - chr8_2:46423292-46423311 Msa1250670:five_prime_UTR 35.0%
!!! ACATTTCGCGTGCTTTTTTA+GGG + chr8_2:46423454-46423473 None:intergenic 35.0%
GTTTCTCACAAGGTTCTATA+CGG - chr8_2:46423475-46423494 Msa1250670:intron 35.0%
!! CTGGTACAACAGTATTGATA+AGG + chr8_2:46423523-46423542 None:intergenic 35.0%
TGTCAATTATAGGAAATGGG+TGG - chr8_2:46424114-46424133 Msa1250670:five_prime_UTR 35.0%
TGAAGGAAAAACCGCATATA+TGG - chr8_2:46424176-46424195 Msa1250670:five_prime_UTR 35.0%
! CATGTTAGTTTATTTGAGGC+TGG - chr8_2:46424340-46424359 Msa1250670:five_prime_UTR 35.0%
!! GAAGAAGATGATGATGATGG+TGG + chr8_2:46421289-46421308 None:intergenic 40.0%
!! TAGGAGTTGTTTTGCACCAA+TGG + chr8_2:46421316-46421335 None:intergenic 40.0%
!! TCTTTGTTGTTTGCCATTGG+AGG + chr8_2:46421348-46421367 None:intergenic 40.0%
TTGATGTTGGAGAGGAAACA+AGG + chr8_2:46421413-46421432 None:intergenic 40.0%
TGGTGATATTGATGTTGGAG+AGG + chr8_2:46421421-46421440 None:intergenic 40.0%
! CAAGAAATAAGTTGAGGTGG+TGG + chr8_2:46421441-46421460 None:intergenic 40.0%
TCAAGTTACCAACGTGTTCA+TGG - chr8_2:46421470-46421489 Msa1250670:CDS 40.0%
TTCCCTCTCATGATGTTGTT+TGG - chr8_2:46421498-46421517 Msa1250670:CDS 40.0%
CTTCCAAACAACATCATGAG+AGG + chr8_2:46421504-46421523 None:intergenic 40.0%
! CTCTCATGATGTTGTTTGGA+AGG - chr8_2:46421502-46421521 Msa1250670:CDS 40.0%
GTATTAATAGGCCTGAGAGA+AGG - chr8_2:46421706-46421725 Msa1250670:CDS 40.0%
AGAATGATGACACCAACAGA+GGG + chr8_2:46421795-46421814 None:intergenic 40.0%
TGTCATCATTCTCACTGGAA+AGG - chr8_2:46421803-46421822 Msa1250670:intron 40.0%
ATAAATGGCAGTAGCAGAAG+AGG + chr8_2:46421833-46421852 None:intergenic 40.0%
GTCAGATATAAGCTTACCGT+TGG - chr8_2:46422006-46422025 Msa1250670:intron 40.0%
! AGTCTAGTTCAAGGTTCAAC+CGG + chr8_2:46422104-46422123 None:intergenic 40.0%
CCTTGAACTAGACTTTACTG+CGG - chr8_2:46422110-46422129 Msa1250670:intron 40.0%
GGATTTGAACTGCTTGAACT+TGG + chr8_2:46422153-46422172 None:intergenic 40.0%
CCTGCAAGTCTAACACATTA+AGG + chr8_2:46422416-46422435 None:intergenic 40.0%
CCTTAATGTGTTAGACTTGC+AGG - chr8_2:46422413-46422432 Msa1250670:intron 40.0%
GCCAATTTAGTCCCTCAAAT+TGG + chr8_2:46422782-46422801 None:intergenic 40.0%
!! TCCTTTGACTTGAGACTTGT+TGG + chr8_2:46422804-46422823 None:intergenic 40.0%
!!! CAATTACTGGTTTTGGAAGG+CGG + chr8_2:46422973-46422992 None:intergenic 40.0%
!! GAGAGTACCATTGCAATTAC+TGG + chr8_2:46422986-46423005 None:intergenic 40.0%
! AGGAGGGCATATATTGCATA+TGG - chr8_2:46423102-46423121 Msa1250670:intron 40.0%
GATAGCATTATCTGCTGCAA+TGG + chr8_2:46423140-46423159 None:intergenic 40.0%
GCAGCAGATAATGCTATCTT+TGG - chr8_2:46423142-46423161 Msa1250670:intron 40.0%
AATGCTATCTTTGGCCAAAC+TGG - chr8_2:46423151-46423170 Msa1250670:intron 40.0%
GAAGTTCTATCATGTCACGT+TGG - chr8_2:46423335-46423354 Msa1250670:intron 40.0%
AATGTGCTTCTCATACAGGT+AGG - chr8_2:46423428-46423447 Msa1250670:intron 40.0%
!!! CACATTTCGCGTGCTTTTTT+AGG + chr8_2:46423455-46423474 None:intergenic 40.0%
! CTAAAAAAGCACGCGAAATG+TGG - chr8_2:46423453-46423472 Msa1250670:intron 40.0%
GCTGTTGAAGCAGAGAAAAT+GGG - chr8_2:46423497-46423516 Msa1250670:intron 40.0%
TGGAATGGAAAGAAGCTTAC+TGG + chr8_2:46423542-46423561 None:intergenic 40.0%
CGAGTGTTCTATGAATGGAA+TGG + chr8_2:46423557-46423576 None:intergenic 40.0%
GCTATTAATGCAGTGGATGA+CGG - chr8_2:46423953-46423972 Msa1250670:five_prime_UTR 40.0%
CTATTAATGCAGTGGATGAC+GGG - chr8_2:46423954-46423973 Msa1250670:five_prime_UTR 40.0%
!! CATACATATGCTCTAAGGGA+AGG + chr8_2:46424074-46424093 None:intergenic 40.0%
!! ATGATGATGATGGTGGGAGT+GGG + chr8_2:46421282-46421301 None:intergenic 45.0%
CCATTGGAGGAATGAGCTAT+AGG + chr8_2:46421335-46421354 None:intergenic 45.0%
CCTATAGCTCATTCCTCCAA+TGG - chr8_2:46421332-46421351 Msa1250670:three_prime_UTR 45.0%
ATGTTGGAGAGGAAACAAGG+TGG + chr8_2:46421410-46421429 None:intergenic 45.0%
! GGTGGTGGTGATATTGATGT+TGG + chr8_2:46421426-46421445 None:intergenic 45.0%
GAACATCACCATGAACACGT+TGG + chr8_2:46421481-46421500 None:intergenic 45.0%
! TGTTGGTGAAGGAATTGCCA+AGG - chr8_2:46421583-46421602 Msa1250670:intron 45.0%
!! CGAAAAGCATTCCTTCTCTC+AGG + chr8_2:46421720-46421739 None:intergenic 45.0%
! GAATGCTTTTCGACCTCACA+CGG - chr8_2:46421728-46421747 Msa1250670:CDS 45.0%
! TTTTCGACCTCACACGGTTA+AGG - chr8_2:46421734-46421753 Msa1250670:CDS 45.0%
GAGAATGATGACACCAACAG+AGG + chr8_2:46421796-46421815 None:intergenic 45.0%
!! GTTGGTGTCATCATTCTCAC+TGG - chr8_2:46421798-46421817 Msa1250670:CDS 45.0%
ACCAAACCATACGGTTCAAC+CGG - chr8_2:46422082-46422101 Msa1250670:intron 45.0%
! CCGCAGTAAAGTCTAGTTCA+AGG + chr8_2:46422113-46422132 None:intergenic 45.0%
GCTTGAACTTGGACGAAACT+GGG + chr8_2:46422142-46422161 None:intergenic 45.0%
TGCTTGAACTTGGACGAAAC+TGG + chr8_2:46422143-46422162 None:intergenic 45.0%
! ATAACCATCTGGAGTCCTCA+AGG + chr8_2:46422370-46422389 None:intergenic 45.0%
GCCAACAAGTCTCAAGTCAA+AGG - chr8_2:46422800-46422819 Msa1250670:intron 45.0%
TCTATCATGTCACGTTGGTG+AGG - chr8_2:46423340-46423359 Msa1250670:intron 45.0%
GCGAAATGTGGTTTCTCACA+AGG - chr8_2:46423465-46423484 Msa1250670:intron 45.0%
GGCTGTTGAAGCAGAGAAAA+TGG - chr8_2:46423496-46423515 Msa1250670:intron 45.0%
AGTGGCGAGTGTTCTATGAA+TGG + chr8_2:46423562-46423581 None:intergenic 45.0%
ATTCGAACGCGAGAAATGGA+AGG + chr8_2:46423630-46423649 None:intergenic 45.0%
AGACATTCGAACGCGAGAAA+TGG + chr8_2:46423634-46423653 None:intergenic 45.0%
GAAATAGCCCAACCGCAATT+CGG - chr8_2:46423918-46423937 Msa1250670:five_prime_UTR 45.0%
AAATAGCCCAACCGCAATTC+GGG - chr8_2:46423919-46423938 Msa1250670:five_prime_UTR 45.0%
CAAGGCAGCTATTAATGCAG+TGG - chr8_2:46423946-46423965 Msa1250670:five_prime_UTR 45.0%
! GGCACTGAAGAAGCAAATGA+AGG - chr8_2:46424159-46424178 Msa1250670:five_prime_UTR 45.0%
!! CAATAAAAAAATAAAATAAA+TGG + chr8_2:46421848-46421867 None:intergenic 5.0%
!! TTTATTGTAAAAATTATTAA+AGG - chr8_2:46421861-46421880 Msa1250670:intron 5.0%
!! TTATTGTAAAAATTATTAAA+GGG - chr8_2:46421862-46421881 Msa1250670:intron 5.0%
!! GATGATGATGATGGTGGGAG+TGG + chr8_2:46421283-46421302 None:intergenic 50.0%
TGGAGAGGAAACAAGGTGGT+TGG + chr8_2:46421406-46421425 None:intergenic 50.0%
ATCAGCTCCTTAACCGTGTG+AGG + chr8_2:46421744-46421763 None:intergenic 50.0%
GCTAGAGATGATCCCTCTGT+TGG - chr8_2:46421780-46421799 Msa1250670:CDS 50.0%
GGGCATCTTGAGGCAAGAAT+TGG - chr8_2:46421882-46421901 Msa1250670:intron 50.0%
ACCGGTTGAACCGTATGGTT+TGG + chr8_2:46422086-46422105 None:intergenic 50.0%
GTTCAACCGGTTGAACCGTA+TGG + chr8_2:46422091-46422110 None:intergenic 50.0%
AATCCGTTGACGTGACTCAG+AGG - chr8_2:46422168-46422187 Msa1250670:CDS 50.0%
AGACCTCTGAGTCACGTCAA+CGG + chr8_2:46422174-46422193 None:intergenic 50.0%
GGAACAGATGCGTTCTGTAG+TGG - chr8_2:46422333-46422352 Msa1250670:intron 50.0%
ACAGATGCGTTCTGTAGTGG+TGG - chr8_2:46422336-46422355 Msa1250670:CDS 50.0%
CCGGCCCTTAGACAATTTGA+CGG + chr8_2:46422597-46422616 None:intergenic 50.0%
CCGTCAAATTGTCTAAGGGC+CGG - chr8_2:46422594-46422613 Msa1250670:CDS 50.0%
GGCGAATCTGCACCTGTAAT+AGG + chr8_2:46422952-46422971 None:intergenic 50.0%
CTTTGGCCAAACTGGTCCTA+AGG - chr8_2:46423159-46423178 Msa1250670:intron 50.0%
! GAAGCACCTTAGGACCAGTT+TGG + chr8_2:46423168-46423187 None:intergenic 50.0%
! AAGGTTGGGAGCTTTGATGC+TGG - chr8_2:46423307-46423326 Msa1250670:five_prime_UTR 50.0%
! GGGAGCTTTGATGCTGGTTA+TGG - chr8_2:46423313-46423332 Msa1250670:five_prime_UTR 50.0%
TGAGAACCCGAATTGCGGTT+GGG + chr8_2:46423928-46423947 None:intergenic 50.0%
TTGAGAACCCGAATTGCGGT+TGG + chr8_2:46423929-46423948 None:intergenic 50.0%
! AACCGCAATTCGGGTTCTCA+AGG - chr8_2:46423928-46423947 Msa1250670:five_prime_UTR 50.0%
TGCCTTGAGAACCCGAATTG+CGG + chr8_2:46423933-46423952 None:intergenic 50.0%
GCGTCTTCGCTCCATATATG+CGG + chr8_2:46424190-46424209 None:intergenic 50.0%
! CATCTGGAGTCCTCAAGGCT+TGG + chr8_2:46422365-46422384 None:intergenic 55.0%
CAAGCCTTGAGGACTCCAGA+TGG - chr8_2:46422363-46422382 Msa1250670:intron 55.0%
! GTGGTGGTGACCAAGCCTTG+AGG - chr8_2:46422352-46422371 Msa1250670:CDS 60.0%
CAGGTAGCAGGGTACGCTGT+TGG - chr8_2:46423079-46423098 Msa1250670:intron 60.0%
GTAGCAGGGTACGCTGTTGG+AGG - chr8_2:46423082-46423101 Msa1250670:intron 60.0%
CAGGGTACGCTGTTGGAGGA+GGG - chr8_2:46423086-46423105 Msa1250670:intron 60.0%
GCAGGGTACGCTGTTGGAGG+AGG - chr8_2:46423085-46423104 Msa1250670:intron 65.0%
! TGACGGGCACGCTGGACTTC+AGG - chr8_2:46423970-46423989 Msa1250670:intron 65.0%
!! GCAGTGGATGACGGGCACGC+TGG - chr8_2:46423962-46423981 Msa1250670:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 46421222 46424464 46421222 ID=Msa1250670;Name=Msa1250670
chr8_2 mRNA 46421222 46424464 46421222 ID=Msa1250670-mRNA-1;Parent=Msa1250670;Name=Msa1250670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=644|0.85|0.62|1|1|1|8|222|186
chr8_2 exon 46421222 46421560 46421222 ID=Msa1250670-mRNA-1:exon:13999;Parent=Msa1250670-mRNA-1
chr8_2 exon 46421695 46421817 46421695 ID=Msa1250670-mRNA-1:exon:13998;Parent=Msa1250670-mRNA-1
chr8_2 exon 46422145 46422236 46422145 ID=Msa1250670-mRNA-1:exon:13997;Parent=Msa1250670-mRNA-1
chr8_2 exon 46422334 46422376 46422334 ID=Msa1250670-mRNA-1:exon:13996;Parent=Msa1250670-mRNA-1
chr8_2 exon 46422506 46422727 46422506 ID=Msa1250670-mRNA-1:exon:13995;Parent=Msa1250670-mRNA-1
chr8_2 exon 46423252 46423353 46423252 ID=Msa1250670-mRNA-1:exon:13994;Parent=Msa1250670-mRNA-1
chr8_2 exon 46423862 46423984 46423862 ID=Msa1250670-mRNA-1:exon:13993;Parent=Msa1250670-mRNA-1
chr8_2 exon 46424082 46424464 46424082 ID=Msa1250670-mRNA-1:exon:13992;Parent=Msa1250670-mRNA-1
chr8_2 five_prime_UTR 46424082 46424464 46424082 ID=Msa1250670-mRNA-1:five_prime_utr;Parent=Msa1250670-mRNA-1
chr8_2 five_prime_UTR 46423862 46423984 46423862 ID=Msa1250670-mRNA-1:five_prime_utr;Parent=Msa1250670-mRNA-1
chr8_2 five_prime_UTR 46423252 46423353 46423252 ID=Msa1250670-mRNA-1:five_prime_utr;Parent=Msa1250670-mRNA-1
chr8_2 five_prime_UTR 46422692 46422727 46422692 ID=Msa1250670-mRNA-1:five_prime_utr;Parent=Msa1250670-mRNA-1
chr8_2 CDS 46422506 46422691 46422506 ID=Msa1250670-mRNA-1:cds;Parent=Msa1250670-mRNA-1
chr8_2 CDS 46422334 46422376 46422334 ID=Msa1250670-mRNA-1:cds;Parent=Msa1250670-mRNA-1
chr8_2 CDS 46422145 46422236 46422145 ID=Msa1250670-mRNA-1:cds;Parent=Msa1250670-mRNA-1
chr8_2 CDS 46421695 46421817 46421695 ID=Msa1250670-mRNA-1:cds;Parent=Msa1250670-mRNA-1
chr8_2 CDS 46421444 46421560 46421444 ID=Msa1250670-mRNA-1:cds;Parent=Msa1250670-mRNA-1
chr8_2 three_prime_UTR 46421222 46421443 46421222 ID=Msa1250670-mRNA-1:three_prime_utr;Parent=Msa1250670-mRNA-1
Gene Sequence

>Msa1250670

ATGGTACTCTCACTATTTACTCCAAATCTCATTTTTTTGTGCACAAAGCCTTCAGCAGCTGCAAATTATTTGCTAACATTAAAACAGGTAGCAGGGTACGCTGTTGGAGGAGGGCATATATTGCATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCTAAGGTTGGGAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCACGCCCTAAAAAAGCACGCGAAATGTGGTTTCTCACAAGGTTCTATACGGCTGTTGAAGCAGAGAAAATGGGCCTTATCAATACTGTTGTACCACTAGAGAATTTAGAAAAAGAAACAATCAAATGGTGTAGGGAGATACTGAGAAATAGCCCAACCGCAATTCGGGTTCTCAAGGCAGCTATTAATGCAGTGGATGACGGGCACGCTGGACTTCAGGAAATGGGTGGAAATTCAACATTGATATTTTATGGCACTGAAGAAGCAAATGAAGGAAAAACCGCATATATGGAGCGAAGACGCCCAGATTTTTCTAAGTTTAATAGAAGACCATAA

Protein sequence

>Msa1250670

MVLSLFTPNLIFLCTKPSAAANYLLTLKQVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRPKKAREMWFLTRFYTAVEAEKMGLINTVVPLENLEKETIKWCREILRNSPTAIRVLKAAINAVDDGHAGLQEMGGNSTLIFYGTEEANEGKTAYMERRRPDFSKFNRRP*