Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305470 | KEH39615.1 | 84.564 | 298 | 19 | 6 | 36 | 308 | 1 | 296 | 8.88e-167 | 475 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305470 | sp|Q9T072|BH025_ARATH | 33.010 | 206 | 99 | 7 | 123 | 299 | 109 | 304 | 1.98e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305470 | A0A072VN90 | 84.564 | 298 | 19 | 6 | 36 | 308 | 1 | 296 | 4.24e-167 | 475 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046670 | Msa0305470 | 0.801876 | 7.320488e-49 | -8.615850e-47 |
| Msa0144510 | Msa0305470 | 0.802231 | 6.187751e-49 | -8.615850e-47 |
| Msa0164630 | Msa0305470 | 0.801295 | 9.632261e-49 | -8.615850e-47 |
| Msa0206600 | Msa0305470 | 0.805964 | 1.034960e-49 | -8.615850e-47 |
| Msa0227100 | Msa0305470 | 0.827687 | 1.363522e-54 | -8.615850e-47 |
| Msa0251140 | Msa0305470 | 0.812360 | 4.409782e-51 | -8.615850e-47 |
| Msa0259750 | Msa0305470 | 0.807837 | 4.158032e-50 | -8.615850e-47 |
| Msa0305470 | Msa0331780 | 0.805877 | 1.079499e-49 | -8.615850e-47 |
| Msa0305470 | Msa0371610 | 0.812056 | 5.137015e-51 | -8.615850e-47 |
| Msa0305470 | Msa0413740 | 0.801717 | 7.892071e-49 | -8.615850e-47 |
| Msa0305470 | Msa0420070 | 0.809874 | 1.524913e-50 | -8.615850e-47 |
| Msa0305470 | Msa0507190 | 0.801738 | 7.815971e-49 | -8.615850e-47 |
| Msa0305470 | Msa0517300 | 0.801917 | 7.181209e-49 | -8.615850e-47 |
| Msa0305470 | Msa0643800 | 0.800079 | 1.705093e-48 | -8.615850e-47 |
| Msa0305470 | Msa0677590 | 0.804779 | 1.833517e-49 | -8.615850e-47 |
| Msa0305470 | Msa0678240 | 0.800776 | 1.229435e-48 | -8.615850e-47 |
| Msa0305470 | Msa0714020 | 0.803343 | 3.647940e-49 | -8.615850e-47 |
| Msa0305470 | Msa0749900 | 0.811886 | 5.594993e-51 | -8.615850e-47 |
| Msa0305470 | Msa0830120 | 0.817140 | 3.849116e-52 | -8.615850e-47 |
| Msa0305470 | Msa0830450 | 0.813027 | 3.150234e-51 | -8.615850e-47 |
| Msa0305470 | Msa0840570 | 0.802342 | 5.872587e-49 | -8.615850e-47 |
| Msa0305470 | Msa0841980 | 0.803241 | 3.829223e-49 | -8.615850e-47 |
| Msa0305470 | Msa0891670 | 0.802763 | 4.807729e-49 | -8.615850e-47 |
| Msa0305470 | Msa1018720 | 0.852642 | 4.038753e-61 | -8.615850e-47 |
| Msa0305470 | Msa1147190 | 0.801274 | 9.726000e-49 | -8.615850e-47 |
| Msa0305470 | Msa1147200 | 0.819454 | 1.151780e-52 | -8.615850e-47 |
| Msa0305470 | Msa1173670 | 0.991212 | 1.824326e-186 | -8.615850e-47 |
| Msa0305470 | Msa1177340 | 0.839341 | 1.679076e-57 | -8.615850e-47 |
| Msa0305470 | Msa1201990 | 0.803163 | 3.973489e-49 | -8.615850e-47 |
| Msa0305470 | Msa1208250 | 0.801744 | 7.793065e-49 | -8.615850e-47 |
| Msa0305470 | Msa1211280 | 0.813640 | 2.310196e-51 | -8.615850e-47 |
| Msa0305470 | Msa1236740 | 0.830738 | 2.479560e-55 | -8.615850e-47 |
| Msa0305470 | Msa1254210 | 0.804974 | 1.669482e-49 | -8.615850e-47 |
| Msa0305470 | Msa1295010 | 0.809666 | 1.690009e-50 | -8.615850e-47 |
| Msa0305470 | Msa1302150 | 0.812632 | 3.844393e-51 | -8.615850e-47 |
| Msa0305470 | Msa1306540 | 0.800775 | 1.230038e-48 | -8.615850e-47 |
| Msa0305470 | Msa1319720 | 0.802413 | 5.676424e-49 | -8.615850e-47 |
| Msa0305470 | Msa1344880 | 0.801687 | 8.003639e-49 | -8.615850e-47 |
| Msa0305470 | Msa1352820 | 0.801986 | 6.951056e-49 | -8.615850e-47 |
| Msa0305470 | Msa1357380 | 0.802945 | 4.409179e-49 | -8.615850e-47 |
| Msa0305470 | Msa1375400 | 0.810889 | 9.207748e-51 | -8.615850e-47 |
| Msa0305470 | Msa1388230 | 0.804434 | 2.164590e-49 | -8.615850e-47 |
| Msa0305470 | Msa1397540 | 0.801535 | 8.601634e-49 | -8.615850e-47 |
| Msa0305470 | Msa1413880 | 0.803153 | 3.992692e-49 | -8.615850e-47 |
| Msa0305470 | Msa1437650 | 0.817366 | 3.422678e-52 | -8.615850e-47 |
| Msa0305470 | Msa1439160 | 0.800937 | 1.140222e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305470 | MtrunA17_Chr2g0333641 | 84.083 | 289 | 20 | 5 | 36 | 300 | 1 | 287 | 2.68e-165 | 462 |
| Msa0305470 | MtrunA17_Chr2g0333621 | 74.403 | 293 | 45 | 6 | 36 | 300 | 1 | 291 | 1.83e-138 | 394 |
| Msa0305470 | MtrunA17_Chr4g0002801 | 38.415 | 328 | 121 | 11 | 36 | 300 | 1 | 310 | 1.82e-53 | 177 |
| Msa0305470 | MtrunA17_Chr4g0002781 | 38.596 | 342 | 129 | 12 | 36 | 303 | 1 | 335 | 1.22e-51 | 173 |
| Msa0305470 | MtrunA17_Chr8g0336681 | 40.090 | 222 | 98 | 6 | 111 | 300 | 97 | 315 | 8.76e-35 | 129 |
| Msa0305470 | MtrunA17_Chr7g0249811 | 32.615 | 325 | 142 | 7 | 36 | 300 | 1 | 308 | 9.71e-33 | 123 |
| Msa0305470 | MtrunA17_Chr6g0468491 | 38.824 | 255 | 111 | 11 | 79 | 300 | 47 | 289 | 3.59e-28 | 110 |
| Msa0305470 | MtrunA17_Chr5g0400661 | 34.050 | 279 | 128 | 12 | 76 | 300 | 38 | 314 | 2.01e-25 | 103 |
| Msa0305470 | MtrunA17_Chr4g0033291 | 34.599 | 237 | 120 | 6 | 93 | 300 | 74 | 304 | 4.41e-25 | 102 |
| Msa0305470 | MtrunA17_Chr5g0400621 | 35.874 | 223 | 94 | 6 | 116 | 302 | 102 | 311 | 1.03e-24 | 101 |
| Msa0305470 | MtrunA17_Chr2g0307131 | 34.711 | 242 | 119 | 8 | 92 | 300 | 96 | 331 | 2.10e-24 | 101 |
| Msa0305470 | MtrunA17_Chr7g0225901 | 35.676 | 185 | 91 | 5 | 142 | 300 | 58 | 240 | 1.55e-23 | 97.1 |
| Msa0305470 | MtrunA17_Chr4g0054581 | 33.333 | 234 | 106 | 5 | 116 | 300 | 122 | 354 | 4.99e-23 | 97.8 |
| Msa0305470 | MtrunA17_Chr4g0033391 | 38.037 | 163 | 74 | 4 | 161 | 300 | 138 | 296 | 1.22e-22 | 95.9 |
| Msa0305470 | MtrunA17_Chr4g0033281 | 34.052 | 232 | 117 | 5 | 93 | 300 | 82 | 301 | 7.30e-22 | 94.0 |
| Msa0305470 | MtrunA17_Chr2g0280161 | 36.471 | 170 | 79 | 3 | 168 | 308 | 173 | 342 | 6.33e-21 | 91.7 |
| Msa0305470 | MtrunA17_Chr2g0307141 | 39.610 | 154 | 67 | 4 | 172 | 300 | 183 | 335 | 8.13e-21 | 91.3 |
| Msa0305470 | MtrunA17_Chr2g0333541 | 31.481 | 270 | 133 | 9 | 58 | 300 | 4 | 248 | 1.44e-20 | 89.4 |
| Msa0305470 | MtrunA17_Chr4g0049331 | 34.545 | 165 | 80 | 2 | 172 | 308 | 135 | 299 | 7.52e-20 | 87.8 |
| Msa0305470 | MtrunA17_Chr4g0054551 | 35.676 | 185 | 83 | 6 | 155 | 308 | 138 | 317 | 1.18e-19 | 87.8 |
| Msa0305470 | MtrunA17_Chr4g0054561 | 35.135 | 185 | 84 | 6 | 155 | 308 | 138 | 317 | 1.40e-19 | 87.4 |
| Msa0305470 | MtrunA17_Chr2g0333611 | 37.278 | 169 | 84 | 4 | 154 | 300 | 27 | 195 | 1.43e-19 | 85.5 |
| Msa0305470 | MtrunA17_Chr5g0400671 | 29.915 | 234 | 130 | 7 | 104 | 308 | 87 | 315 | 8.62e-19 | 85.1 |
| Msa0305470 | MtrunA17_Chr4g0054621 | 33.333 | 186 | 87 | 5 | 139 | 300 | 145 | 317 | 1.18e-18 | 85.1 |
| Msa0305470 | MtrunA17_Chr8g0368371 | 39.597 | 149 | 68 | 6 | 60 | 200 | 6 | 140 | 4.56e-17 | 76.6 |
| Msa0305470 | MtrunA17_Chr4g0054571 | 29.358 | 218 | 123 | 3 | 114 | 300 | 92 | 309 | 4.69e-15 | 74.7 |
| Msa0305470 | MtrunA17_Chr5g0400641 | 37.500 | 152 | 67 | 4 | 175 | 300 | 1 | 150 | 1.45e-14 | 70.1 |
| Msa0305470 | MtrunA17_Chr7g0233441 | 44.706 | 85 | 44 | 1 | 219 | 300 | 92 | 176 | 5.40e-14 | 69.7 |
| Msa0305470 | MtrunA17_Chr6g0468461 | 30.387 | 181 | 91 | 3 | 149 | 306 | 149 | 317 | 4.37e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305470 | AT4G37850.2 | 33.010 | 206 | 99 | 7 | 123 | 299 | 109 | 304 | 2.02e-19 | 87.4 |
| Msa0305470 | AT4G37850.1 | 33.010 | 206 | 99 | 7 | 123 | 299 | 109 | 304 | 2.02e-19 | 87.4 |
| Msa0305470 | AT2G22760.2 | 37.349 | 166 | 77 | 3 | 164 | 302 | 111 | 276 | 7.58e-19 | 85.1 |
| Msa0305470 | AT2G22760.1 | 36.585 | 164 | 77 | 3 | 164 | 300 | 111 | 274 | 8.80e-18 | 82.4 |
| Msa0305470 | AT2G22750.4 | 32.889 | 225 | 106 | 8 | 112 | 299 | 93 | 309 | 1.22e-16 | 79.7 |
| Msa0305470 | AT2G22750.1 | 32.889 | 225 | 106 | 8 | 112 | 299 | 65 | 281 | 1.26e-16 | 79.3 |
| Msa0305470 | AT2G22750.2 | 32.889 | 225 | 106 | 8 | 112 | 299 | 65 | 281 | 1.34e-16 | 79.3 |
| Msa0305470 | AT2G22750.5 | 32.889 | 225 | 106 | 8 | 112 | 299 | 89 | 305 | 1.54e-16 | 79.3 |
| Msa0305470 | AT2G22750.3 | 32.889 | 225 | 106 | 8 | 112 | 299 | 93 | 309 | 1.55e-16 | 79.3 |
| Msa0305470 | AT2G22770.1 | 29.756 | 205 | 90 | 5 | 150 | 300 | 95 | 299 | 1.02e-12 | 68.2 |
Find 61 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTACTTCTTGTTCTGATTC+TGG | 0.178025 | 2_3:+63204291 | None:intergenic |
| CAGCAACCTGTTACATATTC+TGG | 0.210205 | 2_3:-63204453 | Msa0305470:CDS |
| CTACTTCTACTCTTTGTTCT+TGG | 0.252338 | 2_3:+63204270 | None:intergenic |
| GCTAGCAGTGTATTGGCTTT+TGG | 0.252967 | 2_3:-63203540 | Msa0305470:CDS |
| GATTCTTTGCTATTCTTGTT+TGG | 0.275304 | 2_3:+63203768 | None:intergenic |
| TGATGTTAAAGCAAGAATAT+TGG | 0.324656 | 2_3:-63203658 | Msa0305470:CDS |
| GCACTTTCAGCTACTATTCC+TGG | 0.324686 | 2_3:-63204114 | Msa0305470:CDS |
| TCAGTGTTTGGATCACATTA+TGG | 0.344284 | 2_3:-63204178 | Msa0305470:CDS |
| AGCTAATGGAATGGGGATAA+GGG | 0.360309 | 2_3:+63204776 | None:intergenic |
| TGTAGTAGTAGCTGGTATTA+TGG | 0.362086 | 2_3:+63204314 | None:intergenic |
| TAGAAGTGGTTCTCAGTGTT+TGG | 0.364117 | 2_3:-63204190 | Msa0305470:CDS |
| TGTCACTGCTAGCAGTGTAT+TGG | 0.365840 | 2_3:-63203547 | Msa0305470:CDS |
| AAGCTAATGGAATGGGGATA+AGG | 0.375867 | 2_3:+63204775 | None:intergenic |
| AAGTAGTAATAAGAGGAGTT+TGG | 0.386060 | 2_3:-63204253 | Msa0305470:CDS |
| TGAGCCGTCCATCTCATTAG+AGG | 0.392211 | 2_3:+63204416 | None:intergenic |
| CTGCTTCCAGAATATGTAAC+AGG | 0.414669 | 2_3:+63204447 | None:intergenic |
| CTGGATGAAGCTAATGGAAT+GGG | 0.417691 | 2_3:+63204768 | None:intergenic |
| AGAGTAGAAGTAGTAATAAG+AGG | 0.424376 | 2_3:-63204260 | Msa0305470:CDS |
| TGGCTTTACTATTGTCGCTC+AGG | 0.443880 | 2_3:-63203505 | Msa0305470:CDS |
| GGAACATTGGCCTCTTCATT+CGG | 0.453854 | 2_3:-63204709 | Msa0305470:intron |
| AGAACATCATGGAGGAATCA+TGG | 0.464890 | 2_3:-63204731 | Msa0305470:CDS |
| TTCTACTCTTCTTTCCACTT+TGG | 0.465419 | 2_3:+63204208 | None:intergenic |
| GATTCTGGTGTAGTAGTAGC+TGG | 0.465607 | 2_3:+63204306 | None:intergenic |
| TTTATTACCTTCTTCAAGCC+AGG | 0.465921 | 2_3:+63204096 | None:intergenic |
| AAGGAGAGAATGAATGTCCT+TGG | 0.473742 | 2_3:+63204348 | None:intergenic |
| AGCAAGAATATTGGAAAATG+AGG | 0.474113 | 2_3:-63203649 | Msa0305470:CDS |
| TAATGGTGACAATAGGAATT+GGG | 0.480317 | 2_3:-63204555 | Msa0305470:intron |
| TACCACCTCAAATTCTGATC+AGG | 0.481127 | 2_3:-63203703 | Msa0305470:CDS |
| TATTCACTGGATGAAGCTAA+TGG | 0.482747 | 2_3:+63204762 | None:intergenic |
| TGGAGGAATCATGGGAACAT+TGG | 0.515296 | 2_3:-63204722 | Msa0305470:CDS |
| TACTATTCCTGGCTTGAAGA+AGG | 0.517604 | 2_3:-63204103 | Msa0305470:intron |
| GGAATGGGGATAAGGGAGGA+TGG | 0.529986 | 2_3:+63204783 | None:intergenic |
| ATAGGAATTGGGTGATGTTG+AGG | 0.530496 | 2_3:-63204544 | Msa0305470:intron |
| ATGGACGGCTCAGATAGCTC+AGG | 0.532196 | 2_3:-63204405 | Msa0305470:CDS |
| GCAATCCTGATCAGAATTTG+AGG | 0.532272 | 2_3:+63203698 | None:intergenic |
| ACTGGATGAAGCTAATGGAA+TGG | 0.547841 | 2_3:+63204767 | None:intergenic |
| AGTGGAAAGAAGAGTAGAAG+TGG | 0.563816 | 2_3:-63204204 | Msa0305470:CDS |
| TAATGGAATGGGGATAAGGG+AGG | 0.565036 | 2_3:+63204779 | None:intergenic |
| GTTCTGTGATGTGTATTCAC+TGG | 0.566034 | 2_3:+63204749 | None:intergenic |
| GGTGATGTTGAGGATTTGCT+AGG | 0.567202 | 2_3:-63204534 | Msa0305470:CDS |
| TCTTTCATCCTCTAATGAGA+TGG | 0.567802 | 2_3:-63204424 | Msa0305470:CDS |
| GCAAAAGCTAGTAACCAAAG+TGG | 0.590525 | 2_3:-63204222 | Msa0305470:CDS |
| AAGTAATTAATGTTTGATCG+TGG | 0.592571 | 2_3:-63204837 | Msa0305470:exon |
| GGAGTGGACGGTGTTGATGA+AGG | 0.594219 | 2_3:+63204369 | None:intergenic |
| GAACATCATGGAGGAATCAT+GGG | 0.596545 | 2_3:-63204730 | Msa0305470:CDS |
| CATTCAGATCCACTGTGAGA+AGG | 0.601974 | 2_3:-63203622 | Msa0305470:CDS |
| GAGAATGAATGTCCTTGGAG+TGG | 0.602643 | 2_3:+63204353 | None:intergenic |
| CTTGCTTTAACATCAAAGAG+TGG | 0.605135 | 2_3:+63203666 | None:intergenic |
| AATATGTAACAGGTTGCTGA+AGG | 0.616197 | 2_3:+63204457 | None:intergenic |
| CATCAACACCGTCCACTCCA+AGG | 0.620000 | 2_3:-63204365 | Msa0305470:CDS |
| TCATCCTCTAATGAGATGGA+CGG | 0.623653 | 2_3:-63204420 | Msa0305470:CDS |
| ATGAATGTCCTTGGAGTGGA+CGG | 0.625719 | 2_3:+63204357 | None:intergenic |
| ATACACATCACAGAACATCA+TGG | 0.634001 | 2_3:-63204742 | Msa0305470:CDS |
| TATTATGGTAGATTTATCAA+AGG | 0.640354 | 2_3:+63204329 | None:intergenic |
| AGAACGTGTGAAGGAGCTAG+AGG | 0.643700 | 2_3:-63203793 | Msa0305470:intron |
| GTGATGTTGAGGATTTGCTA+GGG | 0.643753 | 2_3:-63204533 | Msa0305470:CDS |
| TGGACGGCTCAGATAGCTCA+GGG | 0.674267 | 2_3:-63204404 | Msa0305470:CDS |
| TGTCAATTTCCTTCTCACAG+TGG | 0.679003 | 2_3:+63203613 | None:intergenic |
| TGGATGAAGCTAATGGAATG+GGG | 0.684423 | 2_3:+63204769 | None:intergenic |
| ATCCTGATCAGAATTTGAGG+TGG | 0.691103 | 2_3:+63203701 | None:intergenic |
| CACATCACAGAACATCATGG+AGG | 0.746318 | 2_3:-63204739 | Msa0305470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATCATTTCAATTAA+TGG | - | chr2_3:63203758-63203777 | Msa0305470:CDS | 10.0% |
| !! | TAAATAATCATTTCAATTAA+TGG | - | chr2_3:63203758-63203777 | Msa0305470:CDS | 10.0% |
| !! | TGCATAAATTAATTAATAGA+TGG | - | chr2_3:63204465-63204484 | Msa0305470:CDS | 15.0% |
| !! | TGCATAAATTAATTAATAGA+TGG | - | chr2_3:63204465-63204484 | Msa0305470:CDS | 15.0% |
| !! | TATTATGGTAGATTTATCAA+AGG | + | chr2_3:63204004-63204023 | None:intergenic | 20.0% |
| !!! | TTAAGAGCACTAATTAAATT+GGG | + | chr2_3:63204273-63204292 | None:intergenic | 20.0% |
| !!! | ATTAAGAGCACTAATTAAAT+TGG | + | chr2_3:63204274-63204293 | None:intergenic | 20.0% |
| !!! | TATTTTATAACGGATTGAAT+TGG | - | chr2_3:63204426-63204445 | Msa0305470:CDS | 20.0% |
| !!! | ATTTTATAACGGATTGAATT+GGG | - | chr2_3:63204427-63204446 | Msa0305470:CDS | 20.0% |
| !! | TATTATGGTAGATTTATCAA+AGG | + | chr2_3:63204004-63204023 | None:intergenic | 20.0% |
| !!! | TTAAGAGCACTAATTAAATT+GGG | + | chr2_3:63204273-63204292 | None:intergenic | 20.0% |
| !!! | ATTAAGAGCACTAATTAAAT+TGG | + | chr2_3:63204274-63204293 | None:intergenic | 20.0% |
| !!! | TATTTTATAACGGATTGAAT+TGG | - | chr2_3:63204426-63204445 | Msa0305470:CDS | 20.0% |
| !!! | ATTTTATAACGGATTGAATT+GGG | - | chr2_3:63204427-63204446 | Msa0305470:CDS | 20.0% |
| ! | AAGTAATTAATGTTTGATCG+TGG | - | chr2_3:63203493-63203512 | Msa0305470:CDS | 25.0% |
| !!! | TGTTCTATGTCATTTTTTTG+AGG | - | chr2_3:63203690-63203709 | Msa0305470:CDS | 25.0% |
| ! | TTTATGTCAGAAAATAGTAC+TGG | + | chr2_3:63203742-63203761 | None:intergenic | 25.0% |
| ! | TTTCAATTAATGGTGACAAT+AGG | - | chr2_3:63203768-63203787 | Msa0305470:CDS | 25.0% |
| ! | TGATGTTAAAGCAAGAATAT+TGG | - | chr2_3:63204672-63204691 | Msa0305470:intron | 25.0% |
| ! | AAGTAATTAATGTTTGATCG+TGG | - | chr2_3:63203493-63203512 | Msa0305470:CDS | 25.0% |
| !!! | TGTTCTATGTCATTTTTTTG+AGG | - | chr2_3:63203690-63203709 | Msa0305470:CDS | 25.0% |
| ! | TTTATGTCAGAAAATAGTAC+TGG | + | chr2_3:63203742-63203761 | None:intergenic | 25.0% |
| ! | TTTCAATTAATGGTGACAAT+AGG | - | chr2_3:63203768-63203787 | Msa0305470:CDS | 25.0% |
| ! | TGATGTTAAAGCAAGAATAT+TGG | - | chr2_3:63204672-63204691 | Msa0305470:intron | 25.0% |
| !! | AGTATTTTTACCGAATGAAG+AGG | + | chr2_3:63203634-63203653 | None:intergenic | 30.0% |
| TTAATGGTGACAATAGGAAT+TGG | - | chr2_3:63203774-63203793 | Msa0305470:CDS | 30.0% | |
| TAATGGTGACAATAGGAATT+GGG | - | chr2_3:63203775-63203794 | Msa0305470:CDS | 30.0% | |
| AGAGTAGAAGTAGTAATAAG+AGG | - | chr2_3:63204070-63204089 | Msa0305470:intron | 30.0% | |
| AAGTAGTAATAAGAGGAGTT+TGG | - | chr2_3:63204077-63204096 | Msa0305470:intron | 30.0% | |
| AGAAGAACATATTAATCCCT+CGG | + | chr2_3:63204375-63204394 | None:intergenic | 30.0% | |
| ATGGACAAGAACTATATACT+TGG | - | chr2_3:63204484-63204503 | Msa0305470:CDS | 30.0% | |
| !! | GATTCTTTGCTATTCTTGTT+TGG | + | chr2_3:63204565-63204584 | None:intergenic | 30.0% |
| AGCAAGAATATTGGAAAATG+AGG | - | chr2_3:63204681-63204700 | Msa0305470:intron | 30.0% | |
| !! | AGTATTTTTACCGAATGAAG+AGG | + | chr2_3:63203634-63203653 | None:intergenic | 30.0% |
| TTAATGGTGACAATAGGAAT+TGG | - | chr2_3:63203774-63203793 | Msa0305470:CDS | 30.0% | |
| TAATGGTGACAATAGGAATT+GGG | - | chr2_3:63203775-63203794 | Msa0305470:CDS | 30.0% | |
| AGAGTAGAAGTAGTAATAAG+AGG | - | chr2_3:63204070-63204089 | Msa0305470:intron | 30.0% | |
| AAGTAGTAATAAGAGGAGTT+TGG | - | chr2_3:63204077-63204096 | Msa0305470:intron | 30.0% | |
| AGAAGAACATATTAATCCCT+CGG | + | chr2_3:63204375-63204394 | None:intergenic | 30.0% | |
| ATGGACAAGAACTATATACT+TGG | - | chr2_3:63204484-63204503 | Msa0305470:CDS | 30.0% | |
| !! | GATTCTTTGCTATTCTTGTT+TGG | + | chr2_3:63204565-63204584 | None:intergenic | 30.0% |
| AGCAAGAATATTGGAAAATG+AGG | - | chr2_3:63204681-63204700 | Msa0305470:intron | 30.0% | |
| TATTCACTGGATGAAGCTAA+TGG | + | chr2_3:63203571-63203590 | None:intergenic | 35.0% | |
| ATACACATCACAGAACATCA+TGG | - | chr2_3:63203588-63203607 | Msa0305470:CDS | 35.0% | |
| AATATGTAACAGGTTGCTGA+AGG | + | chr2_3:63203876-63203895 | None:intergenic | 35.0% | |
| TCTTTCATCCTCTAATGAGA+TGG | - | chr2_3:63203906-63203925 | Msa0305470:intron | 35.0% | |
| TGTAGTAGTAGCTGGTATTA+TGG | + | chr2_3:63204019-63204038 | None:intergenic | 35.0% | |
| CTACTTCTACTCTTTGTTCT+TGG | + | chr2_3:63204063-63204082 | None:intergenic | 35.0% | |
| TTCTACTCTTCTTTCCACTT+TGG | + | chr2_3:63204125-63204144 | None:intergenic | 35.0% | |
| TCAGTGTTTGGATCACATTA+TGG | - | chr2_3:63204152-63204171 | Msa0305470:CDS | 35.0% | |
| TTTATTACCTTCTTCAAGCC+AGG | + | chr2_3:63204237-63204256 | None:intergenic | 35.0% | |
| !! | GTAGAAAGATTGATTTGTCC+CGG | - | chr2_3:63204342-63204361 | Msa0305470:CDS | 35.0% |
| TTAATCCCTCGGTTAAATAC+CGG | + | chr2_3:63204364-63204383 | None:intergenic | 35.0% | |
| CTTGCTTTAACATCAAAGAG+TGG | + | chr2_3:63204667-63204686 | None:intergenic | 35.0% | |
| TATTCACTGGATGAAGCTAA+TGG | + | chr2_3:63203571-63203590 | None:intergenic | 35.0% | |
| ATACACATCACAGAACATCA+TGG | - | chr2_3:63203588-63203607 | Msa0305470:CDS | 35.0% | |
| AATATGTAACAGGTTGCTGA+AGG | + | chr2_3:63203876-63203895 | None:intergenic | 35.0% | |
| TCTTTCATCCTCTAATGAGA+TGG | - | chr2_3:63203906-63203925 | Msa0305470:intron | 35.0% | |
| TGTAGTAGTAGCTGGTATTA+TGG | + | chr2_3:63204019-63204038 | None:intergenic | 35.0% | |
| CTACTTCTACTCTTTGTTCT+TGG | + | chr2_3:63204063-63204082 | None:intergenic | 35.0% | |
| TTCTACTCTTCTTTCCACTT+TGG | + | chr2_3:63204125-63204144 | None:intergenic | 35.0% | |
| TCAGTGTTTGGATCACATTA+TGG | - | chr2_3:63204152-63204171 | Msa0305470:CDS | 35.0% | |
| TTTATTACCTTCTTCAAGCC+AGG | + | chr2_3:63204237-63204256 | None:intergenic | 35.0% | |
| !! | GTAGAAAGATTGATTTGTCC+CGG | - | chr2_3:63204342-63204361 | Msa0305470:CDS | 35.0% |
| TTAATCCCTCGGTTAAATAC+CGG | + | chr2_3:63204364-63204383 | None:intergenic | 35.0% | |
| CTTGCTTTAACATCAAAGAG+TGG | + | chr2_3:63204667-63204686 | None:intergenic | 35.0% | |
| AGCTAATGGAATGGGGATAA+GGG | + | chr2_3:63203557-63203576 | None:intergenic | 40.0% | |
| AAGCTAATGGAATGGGGATA+AGG | + | chr2_3:63203558-63203577 | None:intergenic | 40.0% | |
| TGGATGAAGCTAATGGAATG+GGG | + | chr2_3:63203564-63203583 | None:intergenic | 40.0% | |
| CTGGATGAAGCTAATGGAAT+GGG | + | chr2_3:63203565-63203584 | None:intergenic | 40.0% | |
| ACTGGATGAAGCTAATGGAA+TGG | + | chr2_3:63203566-63203585 | None:intergenic | 40.0% | |
| GTTCTGTGATGTGTATTCAC+TGG | + | chr2_3:63203584-63203603 | None:intergenic | 40.0% | |
| AGAACATCATGGAGGAATCA+TGG | - | chr2_3:63203599-63203618 | Msa0305470:CDS | 40.0% | |
| GAACATCATGGAGGAATCAT+GGG | - | chr2_3:63203600-63203619 | Msa0305470:CDS | 40.0% | |
| ATAGGAATTGGGTGATGTTG+AGG | - | chr2_3:63203786-63203805 | Msa0305470:intron | 40.0% | |
| !! | GTGATGTTGAGGATTTGCTA+GGG | - | chr2_3:63203797-63203816 | Msa0305470:intron | 40.0% |
| CAGCAACCTGTTACATATTC+TGG | - | chr2_3:63203877-63203896 | Msa0305470:intron | 40.0% | |
| CTGCTTCCAGAATATGTAAC+AGG | + | chr2_3:63203886-63203905 | None:intergenic | 40.0% | |
| TCATCCTCTAATGAGATGGA+CGG | - | chr2_3:63203910-63203929 | Msa0305470:intron | 40.0% | |
| AAGGAGAGAATGAATGTCCT+TGG | + | chr2_3:63203985-63204004 | None:intergenic | 40.0% | |
| GGTACTTCTTGTTCTGATTC+TGG | + | chr2_3:63204042-63204061 | None:intergenic | 40.0% | |
| GCAAAAGCTAGTAACCAAAG+TGG | - | chr2_3:63204108-63204127 | Msa0305470:CDS | 40.0% | |
| AGTGGAAAGAAGAGTAGAAG+TGG | - | chr2_3:63204126-63204145 | Msa0305470:CDS | 40.0% | |
| TAGAAGTGGTTCTCAGTGTT+TGG | - | chr2_3:63204140-63204159 | Msa0305470:CDS | 40.0% | |
| ! | TACTATTCCTGGCTTGAAGA+AGG | - | chr2_3:63204227-63204246 | Msa0305470:CDS | 40.0% |
| TAATCCCTCGGTTAAATACC+GGG | + | chr2_3:63204363-63204382 | None:intergenic | 40.0% | |
| ACTACTTCAAGAACGTGTGA+AGG | - | chr2_3:63204528-63204547 | Msa0305470:CDS | 40.0% | |
| TACCACCTCAAATTCTGATC+AGG | - | chr2_3:63204627-63204646 | Msa0305470:intron | 40.0% | |
| ATCCTGATCAGAATTTGAGG+TGG | + | chr2_3:63204632-63204651 | None:intergenic | 40.0% | |
| GCAATCCTGATCAGAATTTG+AGG | + | chr2_3:63204635-63204654 | None:intergenic | 40.0% | |
| TGTCAATTTCCTTCTCACAG+TGG | + | chr2_3:63204720-63204739 | None:intergenic | 40.0% | |
| !!! | GCTTTTGGAACTTCAACTCT+TGG | - | chr2_3:63204805-63204824 | Msa0305470:CDS | 40.0% |
| AGCTAATGGAATGGGGATAA+GGG | + | chr2_3:63203557-63203576 | None:intergenic | 40.0% | |
| AAGCTAATGGAATGGGGATA+AGG | + | chr2_3:63203558-63203577 | None:intergenic | 40.0% | |
| TGGATGAAGCTAATGGAATG+GGG | + | chr2_3:63203564-63203583 | None:intergenic | 40.0% | |
| CTGGATGAAGCTAATGGAAT+GGG | + | chr2_3:63203565-63203584 | None:intergenic | 40.0% | |
| ACTGGATGAAGCTAATGGAA+TGG | + | chr2_3:63203566-63203585 | None:intergenic | 40.0% | |
| GTTCTGTGATGTGTATTCAC+TGG | + | chr2_3:63203584-63203603 | None:intergenic | 40.0% | |
| AGAACATCATGGAGGAATCA+TGG | - | chr2_3:63203599-63203618 | Msa0305470:CDS | 40.0% | |
| GAACATCATGGAGGAATCAT+GGG | - | chr2_3:63203600-63203619 | Msa0305470:CDS | 40.0% | |
| ATAGGAATTGGGTGATGTTG+AGG | - | chr2_3:63203786-63203805 | Msa0305470:intron | 40.0% | |
| !! | GTGATGTTGAGGATTTGCTA+GGG | - | chr2_3:63203797-63203816 | Msa0305470:intron | 40.0% |
| CAGCAACCTGTTACATATTC+TGG | - | chr2_3:63203877-63203896 | Msa0305470:intron | 40.0% | |
| CTGCTTCCAGAATATGTAAC+AGG | + | chr2_3:63203886-63203905 | None:intergenic | 40.0% | |
| TCATCCTCTAATGAGATGGA+CGG | - | chr2_3:63203910-63203929 | Msa0305470:intron | 40.0% | |
| AAGGAGAGAATGAATGTCCT+TGG | + | chr2_3:63203985-63204004 | None:intergenic | 40.0% | |
| GGTACTTCTTGTTCTGATTC+TGG | + | chr2_3:63204042-63204061 | None:intergenic | 40.0% | |
| GCAAAAGCTAGTAACCAAAG+TGG | - | chr2_3:63204108-63204127 | Msa0305470:CDS | 40.0% | |
| AGTGGAAAGAAGAGTAGAAG+TGG | - | chr2_3:63204126-63204145 | Msa0305470:CDS | 40.0% | |
| TAGAAGTGGTTCTCAGTGTT+TGG | - | chr2_3:63204140-63204159 | Msa0305470:CDS | 40.0% | |
| ! | TACTATTCCTGGCTTGAAGA+AGG | - | chr2_3:63204227-63204246 | Msa0305470:CDS | 40.0% |
| TAATCCCTCGGTTAAATACC+GGG | + | chr2_3:63204363-63204382 | None:intergenic | 40.0% | |
| ACTACTTCAAGAACGTGTGA+AGG | - | chr2_3:63204528-63204547 | Msa0305470:CDS | 40.0% | |
| TACCACCTCAAATTCTGATC+AGG | - | chr2_3:63204627-63204646 | Msa0305470:intron | 40.0% | |
| ATCCTGATCAGAATTTGAGG+TGG | + | chr2_3:63204632-63204651 | None:intergenic | 40.0% | |
| GCAATCCTGATCAGAATTTG+AGG | + | chr2_3:63204635-63204654 | None:intergenic | 40.0% | |
| TGTCAATTTCCTTCTCACAG+TGG | + | chr2_3:63204720-63204739 | None:intergenic | 40.0% | |
| !!! | GCTTTTGGAACTTCAACTCT+TGG | - | chr2_3:63204805-63204824 | Msa0305470:CDS | 40.0% |
| TAATGGAATGGGGATAAGGG+AGG | + | chr2_3:63203554-63203573 | None:intergenic | 45.0% | |
| CACATCACAGAACATCATGG+AGG | - | chr2_3:63203591-63203610 | Msa0305470:CDS | 45.0% | |
| TGGAGGAATCATGGGAACAT+TGG | - | chr2_3:63203608-63203627 | Msa0305470:CDS | 45.0% | |
| ! | GGAACATTGGCCTCTTCATT+CGG | - | chr2_3:63203621-63203640 | Msa0305470:CDS | 45.0% |
| ! | GGTGATGTTGAGGATTTGCT+AGG | - | chr2_3:63203796-63203815 | Msa0305470:intron | 45.0% |
| ATGAATGTCCTTGGAGTGGA+CGG | + | chr2_3:63203976-63203995 | None:intergenic | 45.0% | |
| GAGAATGAATGTCCTTGGAG+TGG | + | chr2_3:63203980-63203999 | None:intergenic | 45.0% | |
| GATTCTGGTGTAGTAGTAGC+TGG | + | chr2_3:63204027-63204046 | None:intergenic | 45.0% | |
| GCACTTTCAGCTACTATTCC+TGG | - | chr2_3:63204216-63204235 | Msa0305470:CDS | 45.0% | |
| TTTGTCCCGGTATTTAACCG+AGG | - | chr2_3:63204355-63204374 | Msa0305470:CDS | 45.0% | |
| TTGTCCCGGTATTTAACCGA+GGG | - | chr2_3:63204356-63204375 | Msa0305470:CDS | 45.0% | |
| CATTCAGATCCACTGTGAGA+AGG | - | chr2_3:63204708-63204727 | Msa0305470:intron | 45.0% | |
| TGTCACTGCTAGCAGTGTAT+TGG | - | chr2_3:63204783-63204802 | Msa0305470:CDS | 45.0% | |
| !!! | GCTAGCAGTGTATTGGCTTT+TGG | - | chr2_3:63204790-63204809 | Msa0305470:CDS | 45.0% |
| ! | TGGCTTTACTATTGTCGCTC+AGG | - | chr2_3:63204825-63204844 | Msa0305470:CDS | 45.0% |
| TAATGGAATGGGGATAAGGG+AGG | + | chr2_3:63203554-63203573 | None:intergenic | 45.0% | |
| CACATCACAGAACATCATGG+AGG | - | chr2_3:63203591-63203610 | Msa0305470:CDS | 45.0% | |
| TGGAGGAATCATGGGAACAT+TGG | - | chr2_3:63203608-63203627 | Msa0305470:CDS | 45.0% | |
| ! | GGAACATTGGCCTCTTCATT+CGG | - | chr2_3:63203621-63203640 | Msa0305470:CDS | 45.0% |
| ! | GGTGATGTTGAGGATTTGCT+AGG | - | chr2_3:63203796-63203815 | Msa0305470:intron | 45.0% |
| ATGAATGTCCTTGGAGTGGA+CGG | + | chr2_3:63203976-63203995 | None:intergenic | 45.0% | |
| GAGAATGAATGTCCTTGGAG+TGG | + | chr2_3:63203980-63203999 | None:intergenic | 45.0% | |
| GATTCTGGTGTAGTAGTAGC+TGG | + | chr2_3:63204027-63204046 | None:intergenic | 45.0% | |
| GCACTTTCAGCTACTATTCC+TGG | - | chr2_3:63204216-63204235 | Msa0305470:CDS | 45.0% | |
| TTTGTCCCGGTATTTAACCG+AGG | - | chr2_3:63204355-63204374 | Msa0305470:CDS | 45.0% | |
| TTGTCCCGGTATTTAACCGA+GGG | - | chr2_3:63204356-63204375 | Msa0305470:CDS | 45.0% | |
| CATTCAGATCCACTGTGAGA+AGG | - | chr2_3:63204708-63204727 | Msa0305470:intron | 45.0% | |
| TGTCACTGCTAGCAGTGTAT+TGG | - | chr2_3:63204783-63204802 | Msa0305470:CDS | 45.0% | |
| !!! | GCTAGCAGTGTATTGGCTTT+TGG | - | chr2_3:63204790-63204809 | Msa0305470:CDS | 45.0% |
| ! | TGGCTTTACTATTGTCGCTC+AGG | - | chr2_3:63204825-63204844 | Msa0305470:CDS | 45.0% |
| !!! | TTAATGATTTTATTTTATAA+CGG | - | chr2_3:63204416-63204435 | Msa0305470:CDS | 5.0% |
| !!! | TTAATGATTTTATTTTATAA+CGG | - | chr2_3:63204416-63204435 | Msa0305470:CDS | 5.0% |
| TGAGCCGTCCATCTCATTAG+AGG | + | chr2_3:63203917-63203936 | None:intergenic | 50.0% | |
| AGAACGTGTGAAGGAGCTAG+AGG | - | chr2_3:63204537-63204556 | Msa0305470:CDS | 50.0% | |
| TGAGCCGTCCATCTCATTAG+AGG | + | chr2_3:63203917-63203936 | None:intergenic | 50.0% | |
| AGAACGTGTGAAGGAGCTAG+AGG | - | chr2_3:63204537-63204556 | Msa0305470:CDS | 50.0% | |
| GGAATGGGGATAAGGGAGGA+TGG | + | chr2_3:63203550-63203569 | None:intergenic | 55.0% | |
| ATGGACGGCTCAGATAGCTC+AGG | - | chr2_3:63203925-63203944 | Msa0305470:intron | 55.0% | |
| TGGACGGCTCAGATAGCTCA+GGG | - | chr2_3:63203926-63203945 | Msa0305470:intron | 55.0% | |
| !! | GGAGTGGACGGTGTTGATGA+AGG | + | chr2_3:63203964-63203983 | None:intergenic | 55.0% |
| CATCAACACCGTCCACTCCA+AGG | - | chr2_3:63203965-63203984 | Msa0305470:intron | 55.0% | |
| GGAATGGGGATAAGGGAGGA+TGG | + | chr2_3:63203550-63203569 | None:intergenic | 55.0% | |
| ATGGACGGCTCAGATAGCTC+AGG | - | chr2_3:63203925-63203944 | Msa0305470:intron | 55.0% | |
| TGGACGGCTCAGATAGCTCA+GGG | - | chr2_3:63203926-63203945 | Msa0305470:intron | 55.0% | |
| !! | GGAGTGGACGGTGTTGATGA+AGG | + | chr2_3:63203964-63203983 | None:intergenic | 55.0% |
| CATCAACACCGTCCACTCCA+AGG | - | chr2_3:63203965-63203984 | Msa0305470:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 63203473 | 63204879 | 63203473 | ID=Msa0305470;Name=Msa0305470 |
| chr2_3 | mRNA | 63203473 | 63204879 | 63203473 | ID=Msa0305470-mRNA-1;Parent=Msa0305470;Name=Msa0305470-mRNA-1;_AED=0.31;_eAED=0.31;_QI=29|0.5|0.66|1|1|1|3|0|309 |
| chr2_3 | exon | 63203473 | 63203802 | 63203473 | ID=Msa0305470-mRNA-1:exon:21168;Parent=Msa0305470-mRNA-1 |
| chr2_3 | exon | 63204104 | 63204562 | 63204104 | ID=Msa0305470-mRNA-1:exon:21167;Parent=Msa0305470-mRNA-1 |
| chr2_3 | exon | 63204710 | 63204879 | 63204710 | ID=Msa0305470-mRNA-1:exon:21166;Parent=Msa0305470-mRNA-1 |
| chr2_3 | five_prime_UTR | 63204851 | 63204879 | 63204851 | ID=Msa0305470-mRNA-1:five_prime_utr;Parent=Msa0305470-mRNA-1 |
| chr2_3 | CDS | 63204710 | 63204850 | 63204710 | ID=Msa0305470-mRNA-1:cds;Parent=Msa0305470-mRNA-1 |
| chr2_3 | CDS | 63204104 | 63204562 | 63204104 | ID=Msa0305470-mRNA-1:cds;Parent=Msa0305470-mRNA-1 |
| chr2_3 | CDS | 63203473 | 63203802 | 63203473 | ID=Msa0305470-mRNA-1:cds;Parent=Msa0305470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
