Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259750 | XP_003597966.1 | 89.172 | 314 | 30 | 4 | 36 | 348 | 1 | 311 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259750 | sp|Q9T072|BH025_ARATH | 38.462 | 221 | 120 | 5 | 131 | 345 | 116 | 326 | 1.36e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259750 | G7IMA7 | 89.172 | 314 | 30 | 4 | 36 | 348 | 1 | 311 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0259750 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038910 | Msa0259750 | 0.807241 | 5.565754e-50 | -8.615850e-47 |
| Msa0060740 | Msa0259750 | 0.809657 | 1.698057e-50 | -8.615850e-47 |
| Msa0092390 | Msa0259750 | 0.805663 | 1.197529e-49 | -8.615850e-47 |
| Msa0110350 | Msa0259750 | 0.820601 | 6.293990e-53 | -8.615850e-47 |
| Msa0135400 | Msa0259750 | 0.805026 | 1.628194e-49 | -8.615850e-47 |
| Msa0151810 | Msa0259750 | 0.803408 | 3.537051e-49 | -8.615850e-47 |
| Msa0173850 | Msa0259750 | 0.800893 | 1.163676e-48 | -8.615850e-47 |
| Msa0181690 | Msa0259750 | 0.803566 | 3.279989e-49 | -8.615850e-47 |
| Msa0183960 | Msa0259750 | 0.807031 | 6.163817e-50 | -8.615850e-47 |
| Msa0187820 | Msa0259750 | 0.801033 | 1.089596e-48 | -8.615850e-47 |
| Msa0194370 | Msa0259750 | 0.811913 | 5.518639e-51 | -8.615850e-47 |
| Msa0207150 | Msa0259750 | 0.806974 | 6.338635e-50 | -8.615850e-47 |
| Msa0210870 | Msa0259750 | 0.851531 | 8.353609e-61 | -8.615850e-47 |
| Msa0227100 | Msa0259750 | 0.890758 | 7.373779e-74 | -8.615850e-47 |
| Msa0249670 | Msa0259750 | 0.800772 | 1.232079e-48 | -8.615850e-47 |
| Msa0253510 | Msa0259750 | 0.810990 | 8.758575e-51 | -8.615850e-47 |
| Msa0256120 | Msa0259750 | 0.800432 | 1.445415e-48 | -8.615850e-47 |
| Msa0259750 | Msa0274890 | 0.810329 | 1.216635e-50 | -8.615850e-47 |
| Msa0259750 | Msa0305470 | 0.807837 | 4.158032e-50 | -8.615850e-47 |
| Msa0259750 | Msa0310260 | 0.812514 | 4.081294e-51 | -8.615850e-47 |
| Msa0259750 | Msa0323790 | 0.801287 | 9.668641e-49 | -8.615850e-47 |
| Msa0259750 | Msa0361500 | 0.835303 | 1.814704e-56 | -8.615850e-47 |
| Msa0259750 | Msa0390840 | 0.839605 | 1.434129e-57 | -8.615850e-47 |
| Msa0259750 | Msa0409000 | 0.823264 | 1.521370e-53 | -8.615850e-47 |
| Msa0259750 | Msa0440220 | 0.800934 | 1.141479e-48 | -8.615850e-47 |
| Msa0259750 | Msa0558220 | 0.802204 | 6.268939e-49 | -8.615850e-47 |
| Msa0259750 | Msa0560010 | 0.800922 | 1.148195e-48 | -8.615850e-47 |
| Msa0259750 | Msa0575970 | 0.812021 | 5.228634e-51 | -8.615850e-47 |
| Msa0259750 | Msa0589680 | 0.805386 | 1.368606e-49 | -8.615850e-47 |
| Msa0259750 | Msa0591570 | 0.807235 | 5.579809e-50 | -8.615850e-47 |
| Msa0259750 | Msa0597300 | 0.808325 | 3.274197e-50 | -8.615850e-47 |
| Msa0259750 | Msa0632040 | 0.800651 | 1.304126e-48 | -8.615850e-47 |
| Msa0259750 | Msa0635070 | 0.802464 | 5.540977e-49 | -8.615850e-47 |
| Msa0259750 | Msa0644610 | 0.805748 | 1.149086e-49 | -8.615850e-47 |
| Msa0259750 | Msa0655360 | 0.800200 | 1.611624e-48 | -8.615850e-47 |
| Msa0259750 | Msa0657820 | 0.806169 | 9.372972e-50 | -8.615850e-47 |
| Msa0259750 | Msa0658280 | 0.808554 | 2.925195e-50 | -8.615850e-47 |
| Msa0259750 | Msa0691150 | 0.827506 | 1.506626e-54 | -8.615850e-47 |
| Msa0259750 | Msa0691180 | 0.809978 | 1.448078e-50 | -8.615850e-47 |
| Msa0259750 | Msa0743630 | 0.808735 | 2.676126e-50 | -8.615850e-47 |
| Msa0259750 | Msa0762390 | 0.819512 | 1.117407e-52 | -8.615850e-47 |
| Msa0259750 | Msa0762470 | 0.823231 | 1.548077e-53 | -8.615850e-47 |
| Msa0259750 | Msa0785670 | 0.825138 | 5.518853e-54 | -8.615850e-47 |
| Msa0259750 | Msa0902810 | 0.807119 | 5.904559e-50 | -8.615850e-47 |
| Msa0259750 | Msa0905290 | 0.801168 | 1.022522e-48 | -8.615850e-47 |
| Msa0259750 | Msa0930090 | 0.805001 | 1.648101e-49 | -8.615850e-47 |
| Msa0259750 | Msa0933050 | 0.825615 | 4.255111e-54 | -8.615850e-47 |
| Msa0259750 | Msa0947520 | -0.806553 | 7.777831e-50 | -8.615850e-47 |
| Msa0259750 | Msa0974570 | 0.808741 | 2.667738e-50 | -8.615850e-47 |
| Msa0259750 | Msa1008960 | 0.802501 | 5.445464e-49 | -8.615850e-47 |
| Msa0259750 | Msa1050320 | 0.812624 | 3.860599e-51 | -8.615850e-47 |
| Msa0259750 | Msa1083930 | 0.800705 | 1.271722e-48 | -8.615850e-47 |
| Msa0259750 | Msa1090020 | 0.805592 | 1.239489e-49 | -8.615850e-47 |
| Msa0259750 | Msa1093250 | 0.814255 | 1.691312e-51 | -8.615850e-47 |
| Msa0259750 | Msa1096280 | 0.801992 | 6.931693e-49 | -8.615850e-47 |
| Msa0259750 | Msa1129320 | 0.805389 | 1.367148e-49 | -8.615850e-47 |
| Msa0259750 | Msa1173670 | 0.819232 | 1.293826e-52 | -8.615850e-47 |
| Msa0259750 | Msa1177360 | 0.828353 | 9.422542e-55 | -8.615850e-47 |
| Msa0259750 | Msa1192790 | 0.803503 | 3.380223e-49 | -8.615850e-47 |
| Msa0259750 | Msa1196990 | 0.812049 | 5.153562e-51 | -8.615850e-47 |
| Msa0259750 | Msa1235960 | 0.804536 | 2.060777e-49 | -8.615850e-47 |
| Msa0259750 | Msa1235990 | 0.806538 | 7.837480e-50 | -8.615850e-47 |
| Msa0259750 | Msa1236740 | 0.832555 | 8.843741e-56 | -8.615850e-47 |
| Msa0259750 | Msa1251960 | 0.803191 | 3.921959e-49 | -8.615850e-47 |
| Msa0259750 | Msa1275920 | 0.815137 | 1.078371e-51 | -8.615850e-47 |
| Msa0259750 | Msa1317140 | 0.813335 | 2.696225e-51 | -8.615850e-47 |
| Msa0259750 | Msa1327400 | 0.802282 | 6.040874e-49 | -8.615850e-47 |
| Msa0259750 | Msa1327420 | 0.805438 | 1.334857e-49 | -8.615850e-47 |
| Msa0259750 | Msa1327690 | 0.800149 | 1.650246e-48 | -8.615850e-47 |
| Msa0259750 | Msa1344870 | 0.813257 | 2.805076e-51 | -8.615850e-47 |
| Msa0259750 | Msa1344880 | 0.819781 | 9.699429e-53 | -8.615850e-47 |
| Msa0259750 | Msa1372470 | 0.817327 | 3.492847e-52 | -8.615850e-47 |
| Msa0259750 | Msa1391600 | 0.807648 | 4.561591e-50 | -8.615850e-47 |
| Msa0259750 | Msa1418780 | 0.800597 | 1.337718e-48 | -8.615850e-47 |
| Msa0259750 | Msa1434850 | 0.812048 | 5.156923e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259750 | MtrunA17_Chr2g0333641 | 89.172 | 314 | 30 | 4 | 36 | 348 | 1 | 311 | 0.0 | 559 |
| Msa0259750 | MtrunA17_Chr2g0333621 | 78.981 | 314 | 56 | 6 | 36 | 343 | 1 | 310 | 8.48e-165 | 463 |
| Msa0259750 | MtrunA17_Chr4g0002801 | 43.266 | 349 | 137 | 10 | 36 | 343 | 1 | 329 | 2.37e-74 | 234 |
| Msa0259750 | MtrunA17_Chr4g0002781 | 42.577 | 357 | 147 | 10 | 36 | 343 | 1 | 348 | 3.93e-69 | 221 |
| Msa0259750 | MtrunA17_Chr8g0336681 | 47.934 | 242 | 113 | 6 | 111 | 343 | 97 | 334 | 3.27e-55 | 185 |
| Msa0259750 | MtrunA17_Chr7g0249811 | 37.278 | 338 | 171 | 6 | 36 | 343 | 1 | 327 | 1.11e-52 | 178 |
| Msa0259750 | MtrunA17_Chr5g0400621 | 43.277 | 238 | 106 | 5 | 116 | 339 | 102 | 324 | 3.33e-45 | 158 |
| Msa0259750 | MtrunA17_Chr5g0400661 | 38.436 | 307 | 139 | 11 | 76 | 343 | 38 | 333 | 6.23e-43 | 152 |
| Msa0259750 | MtrunA17_Chr6g0468491 | 40.659 | 273 | 135 | 9 | 79 | 339 | 47 | 304 | 1.15e-42 | 151 |
| Msa0259750 | MtrunA17_Chr2g0307131 | 41.475 | 217 | 118 | 5 | 131 | 339 | 131 | 346 | 3.64e-42 | 150 |
| Msa0259750 | MtrunA17_Chr4g0033391 | 40.670 | 209 | 117 | 3 | 140 | 343 | 109 | 315 | 1.03e-40 | 146 |
| Msa0259750 | MtrunA17_Chr4g0054581 | 39.759 | 249 | 124 | 6 | 116 | 339 | 122 | 369 | 1.46e-40 | 147 |
| Msa0259750 | MtrunA17_Chr4g0033291 | 37.121 | 264 | 147 | 6 | 93 | 347 | 74 | 327 | 2.07e-39 | 143 |
| Msa0259750 | MtrunA17_Chr4g0049331 | 45.402 | 174 | 93 | 1 | 174 | 345 | 135 | 308 | 2.87e-38 | 139 |
| Msa0259750 | MtrunA17_Chr2g0280161 | 46.703 | 182 | 88 | 3 | 170 | 345 | 173 | 351 | 3.86e-38 | 140 |
| Msa0259750 | MtrunA17_Chr2g0307141 | 40.271 | 221 | 120 | 4 | 130 | 339 | 131 | 350 | 1.36e-37 | 139 |
| Msa0259750 | MtrunA17_Chr2g0333611 | 42.932 | 191 | 95 | 3 | 156 | 339 | 27 | 210 | 1.98e-37 | 134 |
| Msa0259750 | MtrunA17_Chr4g0054561 | 42.708 | 192 | 100 | 4 | 157 | 343 | 138 | 324 | 1.59e-36 | 135 |
| Msa0259750 | MtrunA17_Chr2g0333541 | 35.374 | 294 | 150 | 9 | 60 | 344 | 6 | 268 | 2.91e-36 | 133 |
| Msa0259750 | MtrunA17_Chr4g0054551 | 42.188 | 192 | 101 | 4 | 157 | 343 | 138 | 324 | 1.53e-35 | 132 |
| Msa0259750 | MtrunA17_Chr7g0225901 | 42.442 | 172 | 93 | 4 | 157 | 324 | 71 | 240 | 3.71e-33 | 124 |
| Msa0259750 | MtrunA17_Chr4g0054621 | 39.227 | 181 | 101 | 3 | 161 | 339 | 159 | 332 | 3.77e-33 | 126 |
| Msa0259750 | MtrunA17_Chr4g0033281 | 36.800 | 250 | 140 | 6 | 93 | 339 | 82 | 316 | 5.91e-33 | 125 |
| Msa0259750 | MtrunA17_Chr5g0400671 | 34.016 | 244 | 149 | 5 | 104 | 343 | 87 | 322 | 1.42e-32 | 124 |
| Msa0259750 | MtrunA17_Chr4g0054571 | 30.178 | 338 | 199 | 7 | 17 | 339 | 9 | 324 | 4.67e-30 | 117 |
| Msa0259750 | MtrunA17_Chr5g0400641 | 43.038 | 158 | 84 | 3 | 177 | 330 | 1 | 156 | 2.10e-28 | 108 |
| Msa0259750 | MtrunA17_Chr7g0233441 | 38.503 | 187 | 100 | 3 | 164 | 346 | 23 | 198 | 5.78e-28 | 108 |
| Msa0259750 | MtrunA17_Chr4g0002831 | 39.759 | 166 | 84 | 4 | 185 | 346 | 53 | 206 | 6.79e-25 | 100 |
| Msa0259750 | MtrunA17_Chr4g0002851 | 38.667 | 150 | 76 | 2 | 197 | 346 | 65 | 198 | 8.37e-23 | 94.7 |
| Msa0259750 | MtrunA17_Chr6g0468461 | 34.081 | 223 | 122 | 5 | 102 | 324 | 114 | 311 | 6.92e-22 | 95.5 |
| Msa0259750 | MtrunA17_Chr8g0368371 | 38.816 | 152 | 69 | 6 | 60 | 203 | 6 | 141 | 6.45e-17 | 77.0 |
| Msa0259750 | MtrunA17_Chr8g0366751 | 29.379 | 177 | 102 | 3 | 150 | 308 | 438 | 609 | 1.64e-15 | 78.2 |
| Msa0259750 | MtrunA17_Chr5g0411341 | 25.108 | 231 | 150 | 3 | 101 | 308 | 410 | 640 | 5.64e-15 | 76.6 |
| Msa0259750 | MtrunA17_Chr8g0346161 | 29.310 | 174 | 108 | 6 | 141 | 308 | 264 | 428 | 1.18e-14 | 75.1 |
| Msa0259750 | MtrunA17_Chr7g0275821 | 34.211 | 114 | 61 | 2 | 173 | 282 | 251 | 354 | 1.94e-12 | 68.2 |
| Msa0259750 | MtrunA17_Chr1g0185621 | 23.711 | 194 | 135 | 4 | 163 | 343 | 464 | 657 | 2.20e-12 | 68.6 |
| Msa0259750 | MtrunA17_Chr8g0336671 | 47.500 | 80 | 38 | 2 | 139 | 218 | 2 | 77 | 1.16e-11 | 60.1 |
| Msa0259750 | MtrunA17_Chr8g0346151 | 25.000 | 176 | 116 | 6 | 142 | 308 | 251 | 419 | 5.60e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259750 | AT4G37850.2 | 38.462 | 221 | 120 | 5 | 131 | 345 | 116 | 326 | 1.38e-37 | 138 |
| Msa0259750 | AT4G37850.1 | 38.462 | 221 | 120 | 5 | 131 | 345 | 116 | 326 | 1.38e-37 | 138 |
| Msa0259750 | AT2G22750.2 | 36.948 | 249 | 136 | 6 | 112 | 347 | 65 | 305 | 2.80e-33 | 126 |
| Msa0259750 | AT2G22750.5 | 36.948 | 249 | 136 | 6 | 112 | 347 | 89 | 329 | 3.71e-33 | 126 |
| Msa0259750 | AT2G22750.3 | 36.948 | 249 | 136 | 6 | 112 | 347 | 93 | 333 | 3.86e-33 | 126 |
| Msa0259750 | AT2G22760.1 | 41.667 | 180 | 99 | 3 | 166 | 339 | 111 | 290 | 7.34e-32 | 122 |
| Msa0259750 | AT2G22750.1 | 36.948 | 249 | 135 | 7 | 112 | 347 | 65 | 304 | 7.46e-32 | 122 |
| Msa0259750 | AT2G22750.4 | 36.948 | 249 | 135 | 7 | 112 | 347 | 93 | 332 | 1.15e-31 | 122 |
| Msa0259750 | AT2G22760.2 | 42.073 | 164 | 90 | 2 | 166 | 324 | 111 | 274 | 8.56e-28 | 110 |
| Msa0259750 | AT2G22770.1 | 36.170 | 188 | 103 | 2 | 174 | 344 | 132 | 319 | 1.11e-24 | 103 |
| Msa0259750 | AT5G46760.1 | 28.800 | 250 | 148 | 9 | 75 | 308 | 320 | 555 | 1.48e-16 | 81.6 |
| Msa0259750 | AT4G17880.1 | 27.650 | 217 | 141 | 5 | 97 | 308 | 347 | 552 | 5.01e-16 | 80.1 |
| Msa0259750 | AT4G09820.1 | 33.803 | 142 | 76 | 2 | 164 | 305 | 353 | 476 | 1.23e-15 | 78.6 |
| Msa0259750 | AT2G46510.1 | 36.800 | 125 | 62 | 4 | 157 | 280 | 377 | 485 | 3.47e-14 | 74.3 |
| Msa0259750 | AT1G32640.1 | 28.571 | 182 | 111 | 7 | 157 | 323 | 434 | 611 | 2.13e-12 | 68.9 |
Find 73 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTCCCTTCCTCCAAC+TGG | 0.191139 | 2_2:+57025008 | None:intergenic |
| CAGCAACCTGTTACATATTC+TGG | 0.210205 | 2_2:-57027412 | Msa0259750:CDS |
| GCTAGCAGTGTATTGGCTTT+TGG | 0.252967 | 2_2:-57026493 | Msa0259750:CDS |
| GATTCTTTGCTATTCTTGTT+TGG | 0.275304 | 2_2:+57026721 | None:intergenic |
| TTACTTCTACTCTTTGTTCT+TGG | 0.277856 | 2_2:+57027223 | None:intergenic |
| ACTTCTTGTTCTGATTCTTC+TGG | 0.307827 | 2_2:+57027247 | None:intergenic |
| TGATGTTAAAGCAAGAATAT+TGG | 0.324656 | 2_2:-57026611 | Msa0259750:CDS |
| GCACTTTCAGCTACTATTCC+TGG | 0.324686 | 2_2:-57027067 | Msa0259750:CDS |
| AGTAGTAGTAGCTGGTATTA+TGG | 0.354699 | 2_2:+57027273 | None:intergenic |
| AGCTAATGGAATGGGGATAA+GGG | 0.360309 | 2_2:+57027735 | None:intergenic |
| TAGAAGTGGTTCTCAGTGTT+TGG | 0.364117 | 2_2:-57027143 | Msa0259750:CDS |
| TGTCACTGCTAGCAGTGTAT+TGG | 0.365840 | 2_2:-57026500 | Msa0259750:CDS |
| AAGCTAATGGAATGGGGATA+AGG | 0.375867 | 2_2:+57027734 | None:intergenic |
| TGAGCCATCCATCTCATTAG+AGG | 0.377502 | 2_2:+57027375 | None:intergenic |
| AAGTAATAATAAGAGGAGTT+TGG | 0.391916 | 2_2:-57027206 | Msa0259750:CDS |
| TCAGTGTTTGGATCACATTA+TGG | 0.401190 | 2_2:-57027131 | Msa0259750:CDS |
| CGAAATGACGGTGATTGATT+TGG | 0.404748 | 2_2:-57025639 | Msa0259750:CDS |
| CTGCTTCCAGAATATGTAAC+AGG | 0.414669 | 2_2:+57027406 | None:intergenic |
| CTGGATGAAGCTAATGGAAT+GGG | 0.417691 | 2_2:+57027727 | None:intergenic |
| AGAGTAGAAGTAATAATAAG+AGG | 0.424376 | 2_2:-57027213 | Msa0259750:CDS |
| TGGCTTTACTATTGTCGCTC+AGG | 0.443880 | 2_2:-57026458 | Msa0259750:intron |
| GGAACATTGGCCTCTTCATT+CGG | 0.453854 | 2_2:-57027668 | Msa0259750:intron |
| CTTCTTCCCTTCCTCCAACT+GGG | 0.463799 | 2_2:+57025009 | None:intergenic |
| AGAACATCATGGAGGAATCA+TGG | 0.464890 | 2_2:-57027690 | Msa0259750:CDS |
| TTCTACTCTTCTTTCCACTT+TGG | 0.465419 | 2_2:+57027161 | None:intergenic |
| TTTATTACCTTCTTCAAGCC+AGG | 0.465921 | 2_2:+57027049 | None:intergenic |
| AAAGATAGAATAAATGTCCT+TGG | 0.468384 | 2_2:+57027307 | None:intergenic |
| AGCAAGAATATTGGAAAATG+AGG | 0.474113 | 2_2:-57026602 | Msa0259750:CDS |
| TAATGGTGACAATAGGAATT+GGG | 0.480317 | 2_2:-57027514 | Msa0259750:intron |
| TACCACCTCAAATTCTGATC+AGG | 0.481127 | 2_2:-57026656 | Msa0259750:CDS |
| TATTCACTGGATGAAGCTAA+TGG | 0.482747 | 2_2:+57027721 | None:intergenic |
| ATGGATGGCTCAGATTGCTC+AGG | 0.485183 | 2_2:-57027364 | Msa0259750:CDS |
| CCAGTTGGAGGAAGGGAAGA+AGG | 0.509133 | 2_2:-57025008 | Msa0259750:CDS |
| TGGAGGAATCATGGGAACAT+TGG | 0.515296 | 2_2:-57027681 | Msa0259750:CDS |
| TACTATTCCTGGCTTGAAGA+AGG | 0.517604 | 2_2:-57027056 | Msa0259750:intron |
| TCTGGTGTAGTAGTAGTAGC+TGG | 0.520741 | 2_2:+57027265 | None:intergenic |
| TCATAACCCAGTTGGAGGAA+GGG | 0.521814 | 2_2:-57025015 | Msa0259750:CDS |
| GGAATGGGGATAAGGGAGGA+TGG | 0.529986 | 2_2:+57027742 | None:intergenic |
| ATAGGAATTGGGTGATGTTG+AGG | 0.530496 | 2_2:-57027503 | Msa0259750:intron |
| GCAATCCTGATCAGAATTTG+AGG | 0.532272 | 2_2:+57026651 | None:intergenic |
| GTCATAACCCAGTTGGAGGA+AGG | 0.543020 | 2_2:-57025016 | Msa0259750:CDS |
| ACTGGATGAAGCTAATGGAA+TGG | 0.547841 | 2_2:+57027726 | None:intergenic |
| AAGAGTCATAACCCAGTTGG+AGG | 0.557437 | 2_2:-57025020 | Msa0259750:CDS |
| TCTTTCATCCTCTAATGAGA+TGG | 0.562481 | 2_2:-57027383 | Msa0259750:CDS |
| AGTGGAAAGAAGAGTAGAAG+TGG | 0.563816 | 2_2:-57027157 | Msa0259750:CDS |
| TAATGGAATGGGGATAAGGG+AGG | 0.565036 | 2_2:+57027738 | None:intergenic |
| GTTCTGTGATGTGTATTCAC+TGG | 0.566034 | 2_2:+57027708 | None:intergenic |
| GGTGATGTTGAGGATTTGCT+AGG | 0.567202 | 2_2:-57027493 | Msa0259750:CDS |
| TAGAATAAATGTCCTTGGAG+TGG | 0.581040 | 2_2:+57027312 | None:intergenic |
| ATGGACAAGAACTATATACT+TGG | 0.584966 | 2_2:-57026799 | Msa0259750:CDS |
| GCAAAAGCAAGTAACCAAAG+TGG | 0.587147 | 2_2:-57027175 | Msa0259750:CDS |
| TGGACGGTGTTGATGAAGGA+TGG | 0.592345 | 2_2:+57027332 | None:intergenic |
| AAGTAATTAATGTTTGATCG+TGG | 0.592571 | 2_2:-57027796 | Msa0259750:exon |
| GGAGTGGACGGTGTTGATGA+AGG | 0.594219 | 2_2:+57027328 | None:intergenic |
| GAACATCATGGAGGAATCAT+GGG | 0.596545 | 2_2:-57027689 | Msa0259750:CDS |
| GGTGTCTTGCAGATGGGTGA+AGG | 0.598134 | 2_2:-57025665 | Msa0259750:intron |
| ATAAATGTCCTTGGAGTGGA+CGG | 0.600736 | 2_2:+57027316 | None:intergenic |
| GGGTGAAGGGTACGAAATGA+CGG | 0.601090 | 2_2:-57025651 | Msa0259750:CDS |
| CATTCAGATCCACTGTGAGA+AGG | 0.601974 | 2_2:-57026575 | Msa0259750:CDS |
| TCATCCTCTAATGAGATGGA+TGG | 0.603818 | 2_2:-57027379 | Msa0259750:CDS |
| CTTGCTTTAACATCAAAGAG+TGG | 0.605135 | 2_2:+57026619 | None:intergenic |
| AATATGTAACAGGTTGCTGA+AGG | 0.616197 | 2_2:+57027416 | None:intergenic |
| CATCAACACCGTCCACTCCA+AGG | 0.620000 | 2_2:-57027324 | Msa0259750:CDS |
| ATACACATCACAGAACATCA+TGG | 0.634001 | 2_2:-57027701 | Msa0259750:CDS |
| GTGTCTTGCAGATGGGTGAA+GGG | 0.634582 | 2_2:-57025664 | Msa0259750:intron |
| AGAACGTGTGAAGGAGCTAG+AGG | 0.643700 | 2_2:-57026746 | Msa0259750:CDS |
| GTGATGTTGAGGATTTGCTA+GGG | 0.643753 | 2_2:-57027492 | Msa0259750:CDS |
| ACTACTTCAAGAACGTGTGA+AGG | 0.653803 | 2_2:-57026755 | Msa0259750:CDS |
| TGGATGGCTCAGATTGCTCA+GGG | 0.676528 | 2_2:-57027363 | Msa0259750:CDS |
| TGTCAATTTCCTTCTCACAG+TGG | 0.679003 | 2_2:+57026566 | None:intergenic |
| TGGATGAAGCTAATGGAATG+GGG | 0.684423 | 2_2:+57027728 | None:intergenic |
| ATCCTGATCAGAATTTGAGG+TGG | 0.691103 | 2_2:+57026654 | None:intergenic |
| CACATCACAGAACATCATGG+AGG | 0.746318 | 2_2:-57027698 | Msa0259750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATCATTTCAATTAA+TGG | - | chr2_2:57025279-57025298 | Msa0259750:intron | 10.0% |
| !!! | TATAATATCATAATGTTTTA+TGG | + | chr2_2:57026404-57026423 | None:intergenic | 10.0% |
| !! | AGAAAAAAACAAAAAAAAAA+GGG | + | chr2_2:57027459-57027478 | None:intergenic | 10.0% |
| !! | AAGAAAAAAACAAAAAAAAA+AGG | + | chr2_2:57027460-57027479 | None:intergenic | 10.0% |
| !! | TGCATAAATTAATTAATAGA+TGG | - | chr2_2:57025992-57026011 | Msa0259750:intron | 15.0% |
| !! | ATGTTTAGCTATTTAAATAT+GGG | + | chr2_2:57026724-57026743 | None:intergenic | 15.0% |
| !! | AATGTTTAGCTATTTAAATA+TGG | + | chr2_2:57026725-57026744 | None:intergenic | 15.0% |
| !!! | AATTATTTTAATCAAGTTGT+AGG | - | chr2_2:57026871-57026890 | Msa0259750:intron | 15.0% |
| !! | CAATCTAATATTTAATAACA+TGG | - | chr2_2:57027124-57027143 | Msa0259750:CDS | 15.0% |
| !!! | AATTATTATTTGAAGAGTTT+TGG | + | chr2_2:57027751-57027770 | None:intergenic | 15.0% |
| !!! | TTAAGAGCACTAATTAAATT+GGG | + | chr2_2:57025800-57025819 | None:intergenic | 20.0% |
| !!! | ATTAAGAGCACTAATTAAAT+TGG | + | chr2_2:57025801-57025820 | None:intergenic | 20.0% |
| !!! | TATTTTATAACGGATTGAAT+TGG | - | chr2_2:57025953-57025972 | Msa0259750:intron | 20.0% |
| !!! | ATTTTATAACGGATTGAATT+GGG | - | chr2_2:57025954-57025973 | Msa0259750:intron | 20.0% |
| !! | AGACGTTTGATAAATTTATA+AGG | + | chr2_2:57026499-57026518 | None:intergenic | 20.0% |
| !! | TCTCATGAGATAATATTTAA+AGG | - | chr2_2:57026516-57026535 | Msa0259750:CDS | 20.0% |
| !! | CTCATGAGATAATATTTAAA+GGG | - | chr2_2:57026517-57026536 | Msa0259750:CDS | 20.0% |
| !!! | TCAAAAACAGTTTTCTTTTA+TGG | - | chr2_2:57026640-57026659 | Msa0259750:CDS | 20.0% |
| !!! | ATGGTAATAATTCACTTTTA+TGG | - | chr2_2:57026659-57026678 | Msa0259750:CDS | 20.0% |
| !! | TATTAATGAATAGTTTGACT+TGG | + | chr2_2:57026820-57026839 | None:intergenic | 20.0% |
| !!! | TTTCTAATATTGTTTTTCCT+CGG | + | chr2_2:57027370-57027389 | None:intergenic | 20.0% |
| !! | AAACAATATTAGAAAAACCT+CGG | - | chr2_2:57027375-57027394 | Msa0259750:CDS | 20.0% |
| !! | TGAAGAAAATTACTCTAATT+GGG | + | chr2_2:57027605-57027624 | None:intergenic | 20.0% |
| !! | TTGAAGAAAATTACTCTAAT+TGG | + | chr2_2:57027606-57027625 | None:intergenic | 20.0% |
| !! | TGAAGAAAATTACTCTAATT+GGG | + | chr2_2:57027605-57027624 | None:intergenic | 20.0% |
| !! | TTGAAGAAAATTACTCTAAT+TGG | + | chr2_2:57027606-57027625 | None:intergenic | 20.0% |
| ! | AAGTAATTAATGTTTGATCG+TGG | - | chr2_2:57025014-57025033 | Msa0259750:CDS | 25.0% |
| !!! | TGTTCTATGTCATTTTTTTG+AGG | - | chr2_2:57025211-57025230 | Msa0259750:intron | 25.0% |
| ! | TTTATGTCAGAAAATAGTAC+TGG | + | chr2_2:57025263-57025282 | None:intergenic | 25.0% |
| ! | TTTCAATTAATGGTGACAAT+AGG | - | chr2_2:57025289-57025308 | Msa0259750:intron | 25.0% |
| ! | AAAGATAGAATAAATGTCCT+TGG | + | chr2_2:57025506-57025525 | None:intergenic | 25.0% |
| ! | AGAGTAGAAGTAATAATAAG+AGG | - | chr2_2:57025597-57025616 | Msa0259750:CDS | 25.0% |
| ! | AAGTAATAATAAGAGGAGTT+TGG | - | chr2_2:57025604-57025623 | Msa0259750:CDS | 25.0% |
| ! | TGATGTTAAAGCAAGAATAT+TGG | - | chr2_2:57026199-57026218 | Msa0259750:intron | 25.0% |
| ! | ACTGGTTAAAGATATGAAAA+AGG | - | chr2_2:57026565-57026584 | Msa0259750:CDS | 25.0% |
| !!! | TTGGCTACTATTTTATTTAC+TGG | + | chr2_2:57026801-57026820 | None:intergenic | 25.0% |
| ! | TGAAGAAGAAGAAAAAAGAA+GGG | + | chr2_2:57027425-57027444 | None:intergenic | 25.0% |
| ! | ATGAAGAAGAAGAAAAAAGA+AGG | + | chr2_2:57027426-57027445 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGGGATTGAAG+TGG | + | chr2_2:57027449-57027468 | None:intergenic | 25.0% |
| ! | GAGTATATTTCTTCAATCAA+AGG | - | chr2_2:57027538-57027557 | Msa0259750:intron | 25.0% |
| ! | TTTCCATGAAGAAAATTTAC+TGG | + | chr2_2:57027661-57027680 | None:intergenic | 25.0% |
| ! | TTCATGGAAAATTCAATTGA+AGG | - | chr2_2:57027671-57027690 | Msa0259750:CDS | 25.0% |
| ! | AACATAAAAAACTCAACCTA+TGG | - | chr2_2:57027711-57027730 | Msa0259750:CDS | 25.0% |
| !!! | TATTATTTGAAGAGTTTTGG+AGG | + | chr2_2:57027748-57027767 | None:intergenic | 25.0% |
| !! | AGTATTTTTACCGAATGAAG+AGG | + | chr2_2:57025155-57025174 | None:intergenic | 30.0% |
| TTAATGGTGACAATAGGAAT+TGG | - | chr2_2:57025295-57025314 | Msa0259750:intron | 30.0% | |
| TAATGGTGACAATAGGAATT+GGG | - | chr2_2:57025296-57025315 | Msa0259750:intron | 30.0% | |
| TTACTTCTACTCTTTGTTCT+TGG | + | chr2_2:57025590-57025609 | None:intergenic | 30.0% | |
| AGAAGAACATATTAATCCCT+CGG | + | chr2_2:57025902-57025921 | None:intergenic | 30.0% | |
| ATGGACAAGAACTATATACT+TGG | - | chr2_2:57026011-57026030 | Msa0259750:intron | 30.0% | |
| !! | GATTCTTTGCTATTCTTGTT+TGG | + | chr2_2:57026092-57026111 | None:intergenic | 30.0% |
| AGCAAGAATATTGGAAAATG+AGG | - | chr2_2:57026208-57026227 | Msa0259750:intron | 30.0% | |
| ATTTAAAGGGAAATGCTAAC+CGG | - | chr2_2:57026530-57026549 | Msa0259750:CDS | 30.0% | |
| !! | TTTTATTTACTGGACCTTGA+TGG | + | chr2_2:57026791-57026810 | None:intergenic | 30.0% |
| ! | CAGTCGGATTTTAAATTCTT+CGG | + | chr2_2:57027311-57027330 | None:intergenic | 30.0% |
| TAGTTGGATTCTGGATAATT+GGG | + | chr2_2:57027507-57027526 | None:intergenic | 30.0% | |
| TACTCAAATTTACTGCTAGT+TGG | + | chr2_2:57027523-57027542 | None:intergenic | 30.0% | |
| ! | ACACCAGTAAATTTTCTTCA+TGG | - | chr2_2:57027655-57027674 | Msa0259750:intron | 30.0% |
| TATTCACTGGATGAAGCTAA+TGG | + | chr2_2:57025092-57025111 | None:intergenic | 35.0% | |
| ATACACATCACAGAACATCA+TGG | - | chr2_2:57025109-57025128 | Msa0259750:intron | 35.0% | |
| AATATGTAACAGGTTGCTGA+AGG | + | chr2_2:57025397-57025416 | None:intergenic | 35.0% | |
| TCTTTCATCCTCTAATGAGA+TGG | - | chr2_2:57025427-57025446 | Msa0259750:intron | 35.0% | |
| TAGAATAAATGTCCTTGGAG+TGG | + | chr2_2:57025501-57025520 | None:intergenic | 35.0% | |
| AGTAGTAGTAGCTGGTATTA+TGG | + | chr2_2:57025540-57025559 | None:intergenic | 35.0% | |
| ACTTCTTGTTCTGATTCTTC+TGG | + | chr2_2:57025566-57025585 | None:intergenic | 35.0% | |
| !! | TGGTTACTTGCTTTTGCTTT+TGG | + | chr2_2:57025632-57025651 | None:intergenic | 35.0% |
| TTCTACTCTTCTTTCCACTT+TGG | + | chr2_2:57025652-57025671 | None:intergenic | 35.0% | |
| TCAGTGTTTGGATCACATTA+TGG | - | chr2_2:57025679-57025698 | Msa0259750:intron | 35.0% | |
| TTTATTACCTTCTTCAAGCC+AGG | + | chr2_2:57025764-57025783 | None:intergenic | 35.0% | |
| !! | GTAGAAAGATTGATTTGTCC+CGG | - | chr2_2:57025869-57025888 | Msa0259750:intron | 35.0% |
| TTAATCCCTCGGTTAAATAC+CGG | + | chr2_2:57025891-57025910 | None:intergenic | 35.0% | |
| CTTGCTTTAACATCAAAGAG+TGG | + | chr2_2:57026194-57026213 | None:intergenic | 35.0% | |
| ATATCTTTAACCAGTGTCTC+GGG | + | chr2_2:57026560-57026579 | None:intergenic | 35.0% | |
| CATATCTTTAACCAGTGTCT+CGG | + | chr2_2:57026561-57026580 | None:intergenic | 35.0% | |
| CTAAATGTTCCATTCCATCA+AGG | - | chr2_2:57026774-57026793 | Msa0259750:CDS | 35.0% | |
| ! | AAAGAAGGGTCTGTTTTACT+CGG | + | chr2_2:57027411-57027430 | None:intergenic | 35.0% |
| CTAGTTGGATTCTGGATAAT+TGG | + | chr2_2:57027508-57027527 | None:intergenic | 35.0% | |
| ATTTACTGCTAGTTGGATTC+TGG | + | chr2_2:57027516-57027535 | None:intergenic | 35.0% | |
| AAAAAGAGTCATAACCCAGT+TGG | - | chr2_2:57027787-57027806 | Msa0259750:CDS | 35.0% | |
| AGCTAATGGAATGGGGATAA+GGG | + | chr2_2:57025078-57025097 | None:intergenic | 40.0% | |
| AAGCTAATGGAATGGGGATA+AGG | + | chr2_2:57025079-57025098 | None:intergenic | 40.0% | |
| TGGATGAAGCTAATGGAATG+GGG | + | chr2_2:57025085-57025104 | None:intergenic | 40.0% | |
| CTGGATGAAGCTAATGGAAT+GGG | + | chr2_2:57025086-57025105 | None:intergenic | 40.0% | |
| ACTGGATGAAGCTAATGGAA+TGG | + | chr2_2:57025087-57025106 | None:intergenic | 40.0% | |
| GTTCTGTGATGTGTATTCAC+TGG | + | chr2_2:57025105-57025124 | None:intergenic | 40.0% | |
| AGAACATCATGGAGGAATCA+TGG | - | chr2_2:57025120-57025139 | Msa0259750:intron | 40.0% | |
| GAACATCATGGAGGAATCAT+GGG | - | chr2_2:57025121-57025140 | Msa0259750:intron | 40.0% | |
| ATAGGAATTGGGTGATGTTG+AGG | - | chr2_2:57025307-57025326 | Msa0259750:intron | 40.0% | |
| !! | GTGATGTTGAGGATTTGCTA+GGG | - | chr2_2:57025318-57025337 | Msa0259750:intron | 40.0% |
| CAGCAACCTGTTACATATTC+TGG | - | chr2_2:57025398-57025417 | Msa0259750:intron | 40.0% | |
| CTGCTTCCAGAATATGTAAC+AGG | + | chr2_2:57025407-57025426 | None:intergenic | 40.0% | |
| TCATCCTCTAATGAGATGGA+TGG | - | chr2_2:57025431-57025450 | Msa0259750:intron | 40.0% | |
| ATAAATGTCCTTGGAGTGGA+CGG | + | chr2_2:57025497-57025516 | None:intergenic | 40.0% | |
| GCAAAAGCAAGTAACCAAAG+TGG | - | chr2_2:57025635-57025654 | Msa0259750:CDS | 40.0% | |
| AGTGGAAAGAAGAGTAGAAG+TGG | - | chr2_2:57025653-57025672 | Msa0259750:CDS | 40.0% | |
| TAGAAGTGGTTCTCAGTGTT+TGG | - | chr2_2:57025667-57025686 | Msa0259750:intron | 40.0% | |
| ! | TACTATTCCTGGCTTGAAGA+AGG | - | chr2_2:57025754-57025773 | Msa0259750:intron | 40.0% |
| TAATCCCTCGGTTAAATACC+GGG | + | chr2_2:57025890-57025909 | None:intergenic | 40.0% | |
| ACTACTTCAAGAACGTGTGA+AGG | - | chr2_2:57026055-57026074 | Msa0259750:intron | 40.0% | |
| TACCACCTCAAATTCTGATC+AGG | - | chr2_2:57026154-57026173 | Msa0259750:intron | 40.0% | |
| ATCCTGATCAGAATTTGAGG+TGG | + | chr2_2:57026159-57026178 | None:intergenic | 40.0% | |
| GCAATCCTGATCAGAATTTG+AGG | + | chr2_2:57026162-57026181 | None:intergenic | 40.0% | |
| TGTCAATTTCCTTCTCACAG+TGG | + | chr2_2:57026247-57026266 | None:intergenic | 40.0% | |
| !!! | GCTTTTGGAACTTCAACTCT+TGG | - | chr2_2:57026332-57026351 | Msa0259750:intron | 40.0% |
| TATCTTTAACCAGTGTCTCG+GGG | + | chr2_2:57026559-57026578 | None:intergenic | 40.0% | |
| TTTACTGGACCTTGATGGAA+TGG | + | chr2_2:57026786-57026805 | None:intergenic | 40.0% | |
| ATAACATGGTGTCTTGCAGA+TGG | - | chr2_2:57027138-57027157 | Msa0259750:CDS | 40.0% | |
| TAACATGGTGTCTTGCAGAT+GGG | - | chr2_2:57027139-57027158 | Msa0259750:CDS | 40.0% | |
| CGAAATGACGGTGATTGATT+TGG | - | chr2_2:57027171-57027190 | Msa0259750:CDS | 40.0% | |
| ! | AAAATACGATTTTGCCCCCT+CGG | - | chr2_2:57027275-57027294 | Msa0259750:CDS | 40.0% |
| ! | TTAACTACCGAGGTTTTCCT+CGG | + | chr2_2:57027344-57027363 | None:intergenic | 40.0% |
| GGAGGTTATGATGATTCCAT+AGG | + | chr2_2:57027730-57027749 | None:intergenic | 40.0% | |
| TAATGGAATGGGGATAAGGG+AGG | + | chr2_2:57025075-57025094 | None:intergenic | 45.0% | |
| CACATCACAGAACATCATGG+AGG | - | chr2_2:57025112-57025131 | Msa0259750:intron | 45.0% | |
| TGGAGGAATCATGGGAACAT+TGG | - | chr2_2:57025129-57025148 | Msa0259750:intron | 45.0% | |
| ! | GGAACATTGGCCTCTTCATT+CGG | - | chr2_2:57025142-57025161 | Msa0259750:intron | 45.0% |
| ! | GGTGATGTTGAGGATTTGCT+AGG | - | chr2_2:57025317-57025336 | Msa0259750:intron | 45.0% |
| TGAGCCATCCATCTCATTAG+AGG | + | chr2_2:57025438-57025457 | None:intergenic | 45.0% | |
| TCTGGTGTAGTAGTAGTAGC+TGG | + | chr2_2:57025548-57025567 | None:intergenic | 45.0% | |
| GCACTTTCAGCTACTATTCC+TGG | - | chr2_2:57025743-57025762 | Msa0259750:intron | 45.0% | |
| TTTGTCCCGGTATTTAACCG+AGG | - | chr2_2:57025882-57025901 | Msa0259750:intron | 45.0% | |
| TTGTCCCGGTATTTAACCGA+GGG | - | chr2_2:57025883-57025902 | Msa0259750:intron | 45.0% | |
| CATTCAGATCCACTGTGAGA+AGG | - | chr2_2:57026235-57026254 | Msa0259750:intron | 45.0% | |
| TGTCACTGCTAGCAGTGTAT+TGG | - | chr2_2:57026310-57026329 | Msa0259750:intron | 45.0% | |
| !!! | GCTAGCAGTGTATTGGCTTT+TGG | - | chr2_2:57026317-57026336 | Msa0259750:intron | 45.0% |
| ! | TGGCTTTACTATTGTCGCTC+AGG | - | chr2_2:57026352-57026371 | Msa0259750:intron | 45.0% |
| TAAATATGGGTCCCGCTAAC+CGG | + | chr2_2:57026711-57026730 | None:intergenic | 45.0% | |
| TTAACTGCCGAGGAAAACCT+CGG | - | chr2_2:57027334-57027353 | Msa0259750:CDS | 45.0% | |
| TACTCGGTAGTTAACTACCG+AGG | + | chr2_2:57027395-57027414 | None:intergenic | 45.0% | |
| AAGAGTCATAACCCAGTTGG+AGG | - | chr2_2:57027790-57027809 | Msa0259750:CDS | 45.0% | |
| TCATAACCCAGTTGGAGGAA+GGG | - | chr2_2:57027795-57027814 | Msa0259750:exon | 45.0% | |
| !!! | TTAATGATTTTATTTTATAA+CGG | - | chr2_2:57025943-57025962 | Msa0259750:intron | 5.0% |
| ATGGATGGCTCAGATTGCTC+AGG | - | chr2_2:57025446-57025465 | Msa0259750:intron | 50.0% | |
| TGGATGGCTCAGATTGCTCA+GGG | - | chr2_2:57025447-57025466 | Msa0259750:intron | 50.0% | |
| !! | TGGACGGTGTTGATGAAGGA+TGG | + | chr2_2:57025481-57025500 | None:intergenic | 50.0% |
| AGAACGTGTGAAGGAGCTAG+AGG | - | chr2_2:57026064-57026083 | Msa0259750:intron | 50.0% | |
| TATGATTAACCAGTGCCCCG+AGG | - | chr2_2:57026682-57026701 | Msa0259750:CDS | 50.0% | |
| GTGTCTTGCAGATGGGTGAA+GGG | - | chr2_2:57027146-57027165 | Msa0259750:CDS | 50.0% | |
| ! | GGGTGAAGGGTACGAAATGA+CGG | - | chr2_2:57027159-57027178 | Msa0259750:CDS | 50.0% |
| GTCATAACCCAGTTGGAGGA+AGG | - | chr2_2:57027794-57027813 | Msa0259750:exon | 50.0% | |
| CTTCTTCCCTTCCTCCAACT+GGG | + | chr2_2:57027804-57027823 | None:intergenic | 50.0% | |
| GGAATGGGGATAAGGGAGGA+TGG | + | chr2_2:57025071-57025090 | None:intergenic | 55.0% | |
| !! | GGAGTGGACGGTGTTGATGA+AGG | + | chr2_2:57025485-57025504 | None:intergenic | 55.0% |
| CATCAACACCGTCCACTCCA+AGG | - | chr2_2:57025486-57025505 | Msa0259750:intron | 55.0% | |
| GGTGTCTTGCAGATGGGTGA+AGG | - | chr2_2:57027145-57027164 | Msa0259750:CDS | 55.0% | |
| TTCGGCAGTTAACTGCCGAG+GGG | + | chr2_2:57027293-57027312 | None:intergenic | 55.0% | |
| CTTCGGCAGTTAACTGCCGA+GGG | + | chr2_2:57027294-57027313 | None:intergenic | 55.0% | |
| TCTTCGGCAGTTAACTGCCG+AGG | + | chr2_2:57027295-57027314 | None:intergenic | 55.0% | |
| CCTCGGCAGTTAACTGCAGT+CGG | + | chr2_2:57027327-57027346 | None:intergenic | 55.0% | |
| ACCTCGGTAGTTAACTGCCG+AGG | - | chr2_2:57027350-57027369 | Msa0259750:CDS | 55.0% | |
| TCCTCGGCAGTTAACTACCG+AGG | + | chr2_2:57027354-57027373 | None:intergenic | 55.0% | |
| CCTTCTTCCCTTCCTCCAAC+TGG | + | chr2_2:57027805-57027824 | None:intergenic | 55.0% | |
| CCAGTTGGAGGAAGGGAAGA+AGG | - | chr2_2:57027802-57027821 | Msa0259750:exon | 55.0% | |
| AACCAGTGTCTCGGGGACAC+CGG | + | chr2_2:57026552-57026571 | None:intergenic | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | + | chr2_2:57027292-57027311 | None:intergenic | 60.0% | |
| CCGACTGCAGTTAACTGCCG+AGG | - | chr2_2:57027324-57027343 | Msa0259750:CDS | 60.0% | |
| AACCGGTGTCCCCGAGACAC+TGG | - | chr2_2:57026547-57026566 | Msa0259750:CDS | 65.0% | |
| AACCAGTGCCCCGAGGACAC+CGG | - | chr2_2:57026689-57026708 | Msa0259750:CDS | 65.0% | |
| TCCCGCTAACCGGTGTCCTC+GGG | + | chr2_2:57026701-57026720 | None:intergenic | 65.0% | |
| GTCCCGCTAACCGGTGTCCT+CGG | + | chr2_2:57026702-57026721 | None:intergenic | 65.0% | |
| AACCGGTGTCCTCGGGGCAC+TGG | + | chr2_2:57026694-57026713 | None:intergenic | 70.0% | |
| ! | GCCCCGAGGACACCGGTTAG+CGG | - | chr2_2:57026696-57026715 | Msa0259750:CDS | 70.0% |
| CCCGCTAACCGGTGTCCTCG+GGG | + | chr2_2:57026700-57026719 | None:intergenic | 70.0% | |
| ! | CCCCGAGGACACCGGTTAGC+GGG | - | chr2_2:57026697-57026716 | Msa0259750:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57024994 | 57027838 | 57024994 | ID=Msa0259750;Name=Msa0259750 |
| chr2_2 | mRNA | 57024994 | 57027838 | 57024994 | ID=Msa0259750-mRNA-1;Parent=Msa0259750;Name=Msa0259750-mRNA-1;_AED=0.28;_eAED=0.28;_QI=29|0.75|0.6|1|1|1|5|0|378 |
| chr2_2 | exon | 57024994 | 57025045 | 57024994 | ID=Msa0259750-mRNA-1:exon:17292;Parent=Msa0259750-mRNA-1 |
| chr2_2 | exon | 57025560 | 57025675 | 57025560 | ID=Msa0259750-mRNA-1:exon:17291;Parent=Msa0259750-mRNA-1 |
| chr2_2 | exon | 57026459 | 57026821 | 57026459 | ID=Msa0259750-mRNA-1:exon:17290;Parent=Msa0259750-mRNA-1 |
| chr2_2 | exon | 57027057 | 57027521 | 57027057 | ID=Msa0259750-mRNA-1:exon:17289;Parent=Msa0259750-mRNA-1 |
| chr2_2 | exon | 57027669 | 57027838 | 57027669 | ID=Msa0259750-mRNA-1:exon:17288;Parent=Msa0259750-mRNA-1 |
| chr2_2 | five_prime_UTR | 57027810 | 57027838 | 57027810 | ID=Msa0259750-mRNA-1:five_prime_utr;Parent=Msa0259750-mRNA-1 |
| chr2_2 | CDS | 57027669 | 57027809 | 57027669 | ID=Msa0259750-mRNA-1:cds;Parent=Msa0259750-mRNA-1 |
| chr2_2 | CDS | 57027057 | 57027521 | 57027057 | ID=Msa0259750-mRNA-1:cds;Parent=Msa0259750-mRNA-1 |
| chr2_2 | CDS | 57026459 | 57026821 | 57026459 | ID=Msa0259750-mRNA-1:cds;Parent=Msa0259750-mRNA-1 |
| chr2_2 | CDS | 57025560 | 57025675 | 57025560 | ID=Msa0259750-mRNA-1:cds;Parent=Msa0259750-mRNA-1 |
| chr2_2 | CDS | 57024994 | 57025045 | 57024994 | ID=Msa0259750-mRNA-1:cds;Parent=Msa0259750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
