AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841980 MtrunA17_Chr5g0411661 99.807 518 1 0 1 518 1 518 0.0 1073
Msa0841980 MtrunA17_Chr5g0428001 83.915 516 74 1 3 518 1 507 0.0 897
Msa0841980 MtrunA17_Chr2g0285171 59.825 458 175 2 52 508 83 532 0.0 573
Msa0841980 MtrunA17_Chr8g0378091 58.369 466 187 4 53 516 9 469 0.0 557
Msa0841980 MtrunA17_Chr3g0121851 58.584 466 186 4 53 516 9 469 0.0 555
Msa0841980 MtrunA17_Chr2g0277581 54.140 471 201 6 47 510 130 592 1.98e-173 501
Msa0841980 MtrunA17_Chr3g0115291 53.291 471 202 6 46 509 116 575 9.18e-171 494
Msa0841980 MtrunA17_Chr7g0268951 64.571 175 62 0 81 255 1 175 1.21e-76 239
Msa0841980 MtrunA17_Chr1g0186271 37.048 332 151 7 171 501 10 284 7.41e-56 189
Msa0841980 MtrunA17_Chr7g0268941 46.358 151 80 1 360 509 16 166 2.68e-38 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841980 AT4G37930.1 88.953 516 56 1 1 516 1 515 0.0 968
Msa0841980 AT5G26780.1 85.106 517 76 1 3 518 1 517 0.0 923
Msa0841980 AT5G26780.4 85.106 517 76 1 3 518 1 517 0.0 923
Msa0841980 AT5G26780.2 82.739 533 75 2 3 518 1 533 0.0 914
Msa0841980 AT5G26780.3 82.739 533 75 2 3 518 1 533 0.0 914
Msa0841980 AT4G32520.2 58.753 497 187 6 22 508 40 528 0.0 602
Msa0841980 AT4G32520.1 58.753 497 187 6 22 508 40 528 0.0 602
Msa0841980 AT4G13930.1 58.155 466 188 4 53 516 9 469 0.0 553
Msa0841980 AT4G13890.1 56.209 459 194 4 53 509 9 462 0.0 527
Msa0841980 AT4G13890.2 59.008 383 155 2 53 433 9 391 2.63e-165 474
Msa0841980 AT1G36370.1 49.797 492 230 6 21 504 106 588 4.07e-165 481
Msa0841980 AT1G22020.2 49.393 494 235 6 24 510 113 598 1.31e-163 477
Msa0841980 AT1G22020.1 49.393 494 235 6 24 510 113 598 1.31e-163 477

Find 129 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGATGCATCTGTGAATT+TGG 0.197823 5_4:-18821183 Msa0841980:CDS
TTCGGTTGGATCCAGCTAAA+TGG 0.224913 5_4:-18823821 Msa0841980:CDS
AAAGGTTATGAGCTTGTTTC+TGG 0.242132 5_4:-18821774 Msa0841980:CDS
ATAATTAGGAACAAAATTAA+AGG 0.266678 5_4:-18821015 Msa0841980:intron
TTTGGTGAATCTCAAGAATA+AGG 0.268021 5_4:-18821730 Msa0841980:intron
ATTTATTGAACAAAATAAAA+AGG 0.280650 5_4:-18825392 Msa0841980:five_prime_UTR
CTATGGTTCCTGGTGGTATC+AGG 0.288605 5_4:-18821359 Msa0841980:CDS
CCTCACAACCATACCATTAC+TGG 0.309322 5_4:-18822298 Msa0841980:CDS
AGCTGTGATGTTAGCAGATA+TGG 0.329731 5_4:-18822706 Msa0841980:CDS
GTTCAATAAATACTATGATT+TGG 0.331496 5_4:+18825404 None:intergenic
AGGAAGTTGCTTATCCAAAC+AGG 0.336766 5_4:+18820312 None:intergenic
TCAATAATATCAGCAATTTC+AGG 0.336823 5_4:+18824712 None:intergenic
AATTTCATTTGGACCCTGTT+TGG 0.342033 5_4:-18820326 Msa0841980:three_prime_UTR
GTTTATGCTATAACTGCTTA+AGG 0.353417 5_4:+18820292 None:intergenic
GATGTGTCTGCTATGGTTCC+TGG 0.354698 5_4:-18821369 Msa0841980:CDS
GTGCTTTCATCCAATCTATA+TGG 0.358204 5_4:+18823108 None:intergenic
ATAACACTTGCGAGACTGTT+TGG 0.361534 5_4:+18820123 None:intergenic
ATGCTTCCAAGGCACGCTTT+TGG 0.362934 5_4:+18823844 None:intergenic
TTCTTACCTCCCCATTTAGC+TGG 0.365927 5_4:+18823810 None:intergenic
TGAGACAATGCCATATAGAT+TGG 0.372179 5_4:-18823118 Msa0841980:CDS
GACTGAGAATCATCTAGTTT+TGG 0.372451 5_4:-18821748 Msa0841980:CDS
AGAAATCTGCTACCCTCTTC+AGG 0.373752 5_4:-18822946 Msa0841980:CDS
TAAGGAGAATTCACGTGTTT+CGG 0.377664 5_4:-18825066 Msa0841980:intron
TCGGTTGGATCCAGCTAAAT+GGG 0.380732 5_4:-18823820 Msa0841980:CDS
GGCAGTGGTGGTAAAGATTA+TGG 0.381389 5_4:-18820560 Msa0841980:intron
AGTGGAGAATTCAATTGCTT+TGG 0.389470 5_4:+18824748 None:intergenic
AGGCCAAAACTAATTGTTGC+TGG 0.397586 5_4:-18822926 Msa0841980:CDS
TCTAAAGACATTAACGAGTC+TGG 0.398196 5_4:+18825810 None:intergenic
GCACCAGCAACAATTAGTTT+TGG 0.398596 5_4:+18822923 None:intergenic
AAATACAGTGAAGGTTATCC+TGG 0.420592 5_4:-18824058 Msa0841980:CDS
CTCAACATCATGACGAAGCT+TGG 0.426845 5_4:+18820944 None:intergenic
ATCAATCAAGCTGTCTTCCC+TGG 0.430141 5_4:-18822334 Msa0841980:CDS
TATAGCAGATGAAAAGCATT+AGG 0.436447 5_4:-18820484 Msa0841980:three_prime_UTR
TGAGGACCACCTTGCAGTCC+AGG 0.439744 5_4:+18822316 None:intergenic
GTTATAATTATTTATTGAAG+TGG 0.440525 5_4:-18825441 Msa0841980:five_prime_UTR
AGCGTGCCTTGGAAGCATTT+CGG 0.445650 5_4:-18823839 Msa0841980:CDS
TCAAAGATGAGATAGATAGA+TGG 0.449040 5_4:+18825331 None:intergenic
GAACTCCTGCTCTTACTTCA+AGG 0.449715 5_4:-18821244 Msa0841980:CDS
CTATCTGTTATGCAAGCTGT+TGG 0.456660 5_4:-18824097 Msa0841980:CDS
TTATCATACACAGCTTCATC+AGG 0.458812 5_4:+18825086 None:intergenic
TATCCTGGAGCAAGATATTA+CGG 0.473262 5_4:-18824043 Msa0841980:CDS
CGTCGAGGAGGATTTCGTTA+AGG 0.474022 5_4:-18821216 Msa0841980:CDS
GTGAACGTGCAGCCTTTGTC+TGG 0.476132 5_4:-18823518 Msa0841980:CDS
CCTCCGTAATATCTTGCTCC+AGG 0.483511 5_4:+18824040 None:intergenic
TGCCTTGGAAGCATTTCGGT+TGG 0.492777 5_4:-18823835 Msa0841980:CDS
GCAAAACAATTCCCAACCAT+TGG 0.494544 5_4:-18820915 Msa0841980:CDS
TTTAGCTGTTGCGTTGAAGC+AGG 0.495619 5_4:-18822275 Msa0841980:intron
ACAACTCACAAGTCACTTCG+TGG 0.500888 5_4:-18822612 Msa0841980:CDS
TCTTGGTATGCTTTATACTC+TGG 0.501564 5_4:+18821953 None:intergenic
GAATTTGGCTTTGAAGATCA+AGG 0.509614 5_4:-18821168 Msa0841980:CDS
GCTGTCTTCCCTGGACTGCA+AGG 0.511974 5_4:-18822325 Msa0841980:CDS
GGTTCCTGGTGGTATCAGGA+TGG 0.513253 5_4:-18821355 Msa0841980:CDS
CGCAACAGCTAAACCAGTAA+TGG 0.514440 5_4:+18822285 None:intergenic
CAAGCTTCGTCATGATGTTG+AGG 0.517604 5_4:-18820943 Msa0841980:CDS
TGCTTCTTCTGTTTACTACA+AGG 0.517801 5_4:-18825239 Msa0841980:intron
ACTACATCTGCATAATCAAA+AGG 0.519854 5_4:+18822642 None:intergenic
GCAATTGAATTCTCCACTTG+AGG 0.521875 5_4:-18824743 Msa0841980:CDS
GCAGATGAAAAGCATTAGGC+TGG 0.522187 5_4:-18820480 Msa0841980:three_prime_UTR
TCAGGATCAATTTCCTCAAG+TGG 0.525701 5_4:+18824730 None:intergenic
TCCTGGAGATGTGTCTGCTA+TGG 0.527373 5_4:-18821376 Msa0841980:CDS
ACATCTTTCTCATGGTTACC+AGG 0.529057 5_4:-18823414 Msa0841980:intron
GGTTATGAGCTTGTTTCTGG+TGG 0.529989 5_4:-18821771 Msa0841980:CDS
ACTATGCCAAAAGCGTGCCT+TGG 0.531463 5_4:-18823850 Msa0841980:CDS
GAAGGTGTTCTATGACTATG+AGG 0.531695 5_4:-18822362 Msa0841980:intron
CTTTGAGATGGCAATGGCAA+TGG 0.531762 5_4:-18825314 Msa0841980:exon
ACCATAGCAGACACATCTCC+AGG 0.532051 5_4:+18821375 None:intergenic
TTGCAGGCTCTGAGTGAGAA+AGG 0.532506 5_4:-18821792 Msa0841980:intron
GTATAAAGCATACCAAGAGC+AGG 0.537001 5_4:-18821948 Msa0841980:CDS
CATGGAGGACATCTTTCTCA+TGG 0.540963 5_4:-18823422 Msa0841980:CDS
ATGGCACTTGATCTCCCTCA+TGG 0.541789 5_4:-18823440 Msa0841980:CDS
GTTCCTGGTGGTATCAGGAT+GGG 0.544981 5_4:-18821354 Msa0841980:intron
CAATAAATACTATGATTTGG+TGG 0.546160 5_4:+18825407 None:intergenic
CAGCTAAACCAGTAATGGTA+TGG 0.548948 5_4:+18822290 None:intergenic
AATTGCTGAGAACCTGCTCT+TGG 0.549215 5_4:+18821936 None:intergenic
ATCAGTGGACTGGTTGCAGC+TGG 0.551421 5_4:-18822678 Msa0841980:CDS
AGTCAACAAACAAGGAAAAG+AGG 0.553974 5_4:-18822547 Msa0841980:intron
GAAACCTCATGATAGAATCA+TGG 0.554022 5_4:-18823459 Msa0841980:CDS
AACTCCTGCTCTTACTTCAA+GGG 0.559611 5_4:-18821243 Msa0841980:CDS
CAATTGCGCAAAATTTGCAC+AGG 0.560674 5_4:-18821918 Msa0841980:intron
TTCCAACACCTTCTCAACTC+TGG 0.563616 5_4:+18821431 None:intergenic
AAGATCAAGGCAGAGAGCAA+AGG 0.565204 5_4:-18821155 Msa0841980:intron
GTTATGAGCTTGTTTCTGGT+GGG 0.566698 5_4:-18821770 Msa0841980:CDS
TGAGAAAGCTAGACAATGGA+AGG 0.567432 5_4:-18824686 Msa0841980:intron
CTGAAAACAGCTTATGAACA+TGG 0.567587 5_4:-18820168 Msa0841980:three_prime_UTR
TATCTATCTCATCTTTGAGA+TGG 0.568176 5_4:-18825326 Msa0841980:exon
TATAGATTGGATGAAAGCAC+AGG 0.570064 5_4:-18823105 Msa0841980:CDS
TCTGCATAATCAAAAGGTGA+AGG 0.572432 5_4:+18822648 None:intergenic
TTTCTGATTAATGGAAGAGG+AGG 0.573198 5_4:-18820513 Msa0841980:three_prime_UTR
GTGTAAACATGAAAATTTGA+CGG 0.576048 5_4:+18823491 None:intergenic
AATCTCTGACTGCACGTAGG+AGG 0.581158 5_4:+18820968 None:intergenic
CTCCAGAGTTGAGAAGGTGT+TGG 0.584928 5_4:-18821433 Msa0841980:CDS
CAATGGCAATGGCTCTTCGT+AGG 0.584959 5_4:-18825303 Msa0841980:CDS
TGATGGCTCCAGAGTTGAGA+AGG 0.585979 5_4:-18821439 Msa0841980:CDS
AATCCCCTTGAAGTAAGAGC+AGG 0.586622 5_4:+18821239 None:intergenic
ACTCCTGCTCTTACTTCAAG+GGG 0.596470 5_4:-18821242 Msa0841980:CDS
CTGCATAATCAAAAGGTGAA+GGG 0.596849 5_4:+18822649 None:intergenic
CCAGTAATGGTATGGTTGTG+AGG 0.597553 5_4:+18822298 None:intergenic
TATGGCACATATCAGTGGAC+TGG 0.602613 5_4:-18822688 Msa0841980:CDS
TGATGAAGCTGTGTATGATA+AGG 0.604971 5_4:-18825084 Msa0841980:CDS
ATCCAACCGAAATGCTTCCA+AGG 0.610410 5_4:+18823833 None:intergenic
TCTCATCTTTGAGATGGCAA+TGG 0.611876 5_4:-18825320 Msa0841980:exon
TGATTATGCACGCATTCGCA+AGG 0.614686 5_4:-18822879 Msa0841980:intron
GCAGATATGGCACATATCAG+TGG 0.614862 5_4:-18822693 Msa0841980:CDS
TTCCACCATAATCTAAAACA+AGG 0.616378 5_4:+18825732 None:intergenic
GAGAAAGATGTCCTCCATGA+GGG 0.617557 5_4:+18823426 None:intergenic
TACTTCAAGGGGATTCGTCG+AGG 0.620380 5_4:-18821231 Msa0841980:CDS
AGCTTGAGAAAGCTAGACAA+TGG 0.621507 5_4:-18824690 Msa0841980:CDS
ATAATCATACAGACGTGCAT+AGG 0.625798 5_4:+18822895 None:intergenic
GTCTTCCCTGGACTGCAAGG+TGG 0.628225 5_4:-18822322 Msa0841980:CDS
TTCAAGGGGATTCGTCGAGG+AGG 0.629218 5_4:-18821228 Msa0841980:CDS
ATGACAAACAAATACAGTGA+AGG 0.630108 5_4:-18824067 Msa0841980:CDS
ACAGAAGAAGCACTGAAGAG+AGG 0.631325 5_4:+18825250 None:intergenic
ACGAAGTGACTTGTGAGTTG+TGG 0.643535 5_4:+18822614 None:intergenic
CGGTTGGATCCAGCTAAATG+GGG 0.647808 5_4:-18823819 Msa0841980:CDS
GAGGACCACCTTGCAGTCCA+GGG 0.648946 5_4:+18822317 None:intergenic
GGAAGTTGCTTATCCAAACA+GGG 0.651924 5_4:+18820313 None:intergenic
AGTGCCATGATTCTATCATG+AGG 0.654392 5_4:+18823455 None:intergenic
ATACCCATCCTGATACCACC+AGG 0.659126 5_4:+18821351 None:intergenic
TTAAAAGAAGTCAACAAACA+AGG 0.661947 5_4:-18822555 Msa0841980:CDS
AAGTCACTTCGTGGACCACG+TGG 0.667056 5_4:-18822603 Msa0841980:CDS
TTGGATCCAGCTAAATGGGG+AGG 0.668787 5_4:-18823816 Msa0841980:intron
TGAGAAAGATGTCCTCCATG+AGG 0.670745 5_4:+18823425 None:intergenic
TTTGACGGTGAACCAGACAA+AGG 0.671805 5_4:+18823506 None:intergenic
AGGATACATTGATTATGACC+AGG 0.672531 5_4:-18823085 Msa0841980:intron
TCATTACAGATATATTGACA+TGG 0.693044 5_4:-18823880 Msa0841980:intron
GCACTTGATCTCCCTCATGG+AGG 0.702241 5_4:-18823437 Msa0841980:CDS
GGAAATCTCTGACTGCACGT+AGG 0.709632 5_4:+18820965 None:intergenic
GTGTCTGCTATGGTTCCTGG+TGG 0.714961 5_4:-18821366 Msa0841980:CDS
CCTGGAGCAAGATATTACGG+AGG 0.734873 5_4:-18824040 Msa0841980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTACATTTAATTTG+AGG + chr5_4:18820286-18820305 None:intergenic 10.0%
!! TAATAATTTAAGTAAAACAA+GGG + chr5_4:18820464-18820483 None:intergenic 10.0%
!! ATAATAATTTAAGTAAAACA+AGG + chr5_4:18820465-18820484 None:intergenic 10.0%
!! ATTTATTGAACAAAATAAAA+AGG - chr5_4:18820588-18820607 Msa0841980:intron 10.0%
!! AATTTATATTTAGAAAATCA+CGG + chr5_4:18823147-18823166 None:intergenic 10.0%
!! GTTATAATTATTTATTGAAG+TGG - chr5_4:18820539-18820558 Msa0841980:three_prime_UTR 15.0%
!! AAAAAGAGATATGTTATTAA+TGG + chr5_4:18820856-18820875 None:intergenic 15.0%
!!! GATTTTTTAATATGTTAGAA+TGG - chr5_4:18822406-18822425 Msa0841980:intron 15.0%
!!! ATAAAAAATGAATTTTGTTC+AGG + chr5_4:18823473-18823492 None:intergenic 15.0%
!! AATAAATCGAAAAATAATGA+TGG - chr5_4:18823730-18823749 Msa0841980:intron 15.0%
!!! ATTTTTTTAGCTTAAGAAAA+GGG - chr5_4:18823859-18823878 Msa0841980:CDS 15.0%
!!! TTTTCAAAAAAACTTTTTTC+AGG - chr5_4:18824514-18824533 Msa0841980:intron 15.0%
!!! TTTCAAAAAAACTTTTTTCA+GGG - chr5_4:18824515-18824534 Msa0841980:intron 15.0%
!! ATAATTAGGAACAAAATTAA+AGG - chr5_4:18824965-18824984 Msa0841980:intron 15.0%
!!! AACTTTTGATTATGAAGTTT+TGG - chr5_4:18820144-18820163 Msa0841980:three_prime_UTR 20.0%
!!! ACTTTTGATTATGAAGTTTT+GGG - chr5_4:18820145-18820164 Msa0841980:three_prime_UTR 20.0%
!!! TGTAAAAATATTTTGTAGCA+AGG - chr5_4:18820295-18820314 Msa0841980:three_prime_UTR 20.0%
!! GTTCAATAAATACTATGATT+TGG + chr5_4:18820579-18820598 None:intergenic 20.0%
!! TATTGAACAAAATAAAAAGG+AGG - chr5_4:18820591-18820610 Msa0841980:intron 20.0%
!! AATATATCAGTGTACATATT+TGG - chr5_4:18820964-18820983 Msa0841980:CDS 20.0%
!! ACATGAAACATATTAATATC+CGG + chr5_4:18821110-18821129 None:intergenic 20.0%
!!! GATTGTTTGATTATATGTTT+TGG - chr5_4:18821173-18821192 Msa0841980:CDS 20.0%
!!! ATATGTTATTACTTTTTCAG+TGG - chr5_4:18821209-18821228 Msa0841980:CDS 20.0%
!!! ATGTATATATTTGTTGAGTA+TGG - chr5_4:18821381-18821400 Msa0841980:CDS 20.0%
!! AAATCTGTGATTTAATAGAA+CGG + chr5_4:18821494-18821513 None:intergenic 20.0%
!! AGATGCAAAAGATTAATAAT+GGG + chr5_4:18821600-18821619 None:intergenic 20.0%
!! AAGATGCAAAAGATTAATAA+TGG + chr5_4:18821601-18821620 None:intergenic 20.0%
!! TGATTGTGTGTTAAAATATT+TGG - chr5_4:18821709-18821728 Msa0841980:intron 20.0%
!!! ACTTGGATGTTTTATTATTT+TGG - chr5_4:18821819-18821838 Msa0841980:intron 20.0%
!!! ATGTTTTATTATTTTGGTGA+AGG - chr5_4:18821825-18821844 Msa0841980:intron 20.0%
!!! TGTTTTATTATTTTGGTGAA+GGG - chr5_4:18821826-18821845 Msa0841980:intron 20.0%
!! AAAAACAACAGATTATAAGA+AGG + chr5_4:18823173-18823192 None:intergenic 20.0%
!! GAACTTACATAAATATTTGT+AGG + chr5_4:18823555-18823574 None:intergenic 20.0%
!! AATTCTTCTTACTTATTTGA+AGG - chr5_4:18823600-18823619 Msa0841980:intron 20.0%
!!! CATTTTTTTAGCTTAAGAAA+AGG - chr5_4:18823858-18823877 Msa0841980:CDS 20.0%
!! AATAACATTAAATATGTTGC+AGG - chr5_4:18824172-18824191 Msa0841980:intron 20.0%
!! AACATAATATATATACCTGA+TGG + chr5_4:18825140-18825159 None:intergenic 20.0%
!! GTATATATATTATGTTGATG+AGG - chr5_4:18825144-18825163 Msa0841980:intron 20.0%
!! TTATTCTCTTCATTATATTG+AGG + chr5_4:18825218-18825237 None:intergenic 20.0%
!!! CAATGTTTTCAAATTTCATT+TGG - chr5_4:18825643-18825662 Msa0841980:five_prime_UTR 20.0%
!! CAATAAATACTATGATTTGG+TGG + chr5_4:18820576-18820595 None:intergenic 25.0%
! TCAATAATATCAGCAATTTC+AGG + chr5_4:18821271-18821290 None:intergenic 25.0%
! AAATTCACTGATAAGTTAGT+CGG - chr5_4:18821407-18821426 Msa0841980:CDS 25.0%
! TTAGAGATAATCTTGTAATC+TGG - chr5_4:18821467-18821486 Msa0841980:intron 25.0%
! GATGCAAAAGATTAATAATG+GGG + chr5_4:18821599-18821618 None:intergenic 25.0%
! ATTCTATCTTAAAGAGAACT+TGG - chr5_4:18821802-18821821 Msa0841980:intron 25.0%
!!! GTTTTATTATTTTGGTGAAG+GGG - chr5_4:18821827-18821846 Msa0841980:intron 25.0%
! TGCTTGTCTTGAATAATTTA+AGG - chr5_4:18821996-18822015 Msa0841980:intron 25.0%
!! ACTGAATAGAGTAATCATTT+TGG - chr5_4:18822024-18822043 Msa0841980:intron 25.0%
!!! AAGATGCACAATTTTTTAGT+TGG + chr5_4:18822078-18822097 None:intergenic 25.0%
! TCATTACAGATATATTGACA+TGG - chr5_4:18822100-18822119 Msa0841980:intron 25.0%
! AAGTATAATATCGCTTGTTT+GGG - chr5_4:18822241-18822260 Msa0841980:intron 25.0%
!!! TCAAATTTTAACAAGCAAAG+CGG + chr5_4:18822352-18822371 None:intergenic 25.0%
! GTGTAAACATGAAAATTTGA+CGG + chr5_4:18822492-18822511 None:intergenic 25.0%
! ATTGTAGATTTCACTATAAC+AGG + chr5_4:18822617-18822636 None:intergenic 25.0%
! ATAATGCTCATTTCTAAGTT+AGG - chr5_4:18822941-18822960 Msa0841980:CDS 25.0%
! TTATATTTAGAAAATCACGG+TGG + chr5_4:18823144-18823163 None:intergenic 25.0%
!!! TCTGTTGTTTTTAATTTGAG+CGG - chr5_4:18823181-18823200 Msa0841980:intron 25.0%
! TTAAAAGAAGTCAACAAACA+AGG - chr5_4:18823425-18823444 Msa0841980:CDS 25.0%
!! GAAGAATTAGTATCTCTTTT+TGG + chr5_4:18823588-18823607 None:intergenic 25.0%
! CTTCAATATCAAGAAAAATG+TGG + chr5_4:18823791-18823810 None:intergenic 25.0%
! TCTAGTATCACTCAAAAATT+TGG + chr5_4:18823914-18823933 None:intergenic 25.0%
!!! ATCTTTTGTTTTTCCATTTG+TGG - chr5_4:18823989-18824008 Msa0841980:intron 25.0%
! ATATAACAGACACAAAAGAA+GGG + chr5_4:18824868-18824887 None:intergenic 25.0%
! TCCTAATTATGAAAGTTCAT+CGG + chr5_4:18824955-18824974 None:intergenic 25.0%
!!! ATTTTTCAAAACCAATGGTT+GGG + chr5_4:18825079-18825098 None:intergenic 25.0%
! TAGATAGTATAACACAATTG+AGG + chr5_4:18825184-18825203 None:intergenic 25.0%
! TACTAGTAATCTGTTAACTT+TGG - chr5_4:18825254-18825273 Msa0841980:CDS 25.0%
!! TGATCAGTTTTTCTGATTAA+TGG - chr5_4:18825458-18825477 Msa0841980:five_prime_UTR 25.0%
!!! CTCTTCCTTGTTTTAGATTA+TGG - chr5_4:18820243-18820262 Msa0841980:three_prime_UTR 30.0%
!!! TTCCTTGTTTTAGATTATGG+TGG - chr5_4:18820246-18820265 Msa0841980:three_prime_UTR 30.0%
! TTCCACCATAATCTAAAACA+AGG + chr5_4:18820251-18820270 None:intergenic 30.0%
TCAAAGATGAGATAGATAGA+TGG + chr5_4:18820652-18820671 None:intergenic 30.0%
! TATCTATCTCATCTTTGAGA+TGG - chr5_4:18820654-18820673 Msa0841980:intron 30.0%
! AGTGTACATATTTGGAATCA+CGG - chr5_4:18820972-18820991 Msa0841980:CDS 30.0%
! AGACAATGGAAGGTATATAT+AGG - chr5_4:18821304-18821323 Msa0841980:intron 30.0%
TTATCTCTAAACCATACCAT+GGG + chr5_4:18821457-18821476 None:intergenic 30.0%
ATTATCTCTAAACCATACCA+TGG + chr5_4:18821458-18821477 None:intergenic 30.0%
TTAACACACAATCAAACAGT+TGG + chr5_4:18821703-18821722 None:intergenic 30.0%
ATGACAAACAAATACAGTGA+AGG - chr5_4:18821913-18821932 Msa0841980:intron 30.0%
!!! TTTTTTAGTTGGATTCAGTC+TGG + chr5_4:18822067-18822086 None:intergenic 30.0%
CAAGACAATAGTTTCTTTGT+TGG - chr5_4:18822195-18822214 Msa0841980:intron 30.0%
CAAGTATAATATCGCTTGTT+TGG - chr5_4:18822240-18822259 Msa0841980:intron 30.0%
TGAAATCTACAATCGATGTA+TGG - chr5_4:18822624-18822643 Msa0841980:CDS 30.0%
TATAGTCATGAATTCTGTCT+TGG - chr5_4:18822744-18822763 Msa0841980:intron 30.0%
TGTTTCATGAGTTCAACTTA+GGG + chr5_4:18823219-18823238 None:intergenic 30.0%
ATGTTTCATGAGTTCAACTT+AGG + chr5_4:18823220-18823239 None:intergenic 30.0%
AACATATTGCAACTTACAAC+AGG - chr5_4:18823235-18823254 Msa0841980:intron 30.0%
ACTACATCTGCATAATCAAA+AGG + chr5_4:18823341-18823360 None:intergenic 30.0%
ACAAAATGAGTTAATCTCTG+TGG + chr5_4:18824148-18824167 None:intergenic 30.0%
TTTGGTGAATCTCAAGAATA+AGG - chr5_4:18824250-18824269 Msa0841980:intron 30.0%
CTAATCATTTGCGTATTAGT+TGG - chr5_4:18824347-18824366 Msa0841980:intron 30.0%
!! AAACATCCATTTTTGTGGAT+CGG + chr5_4:18824449-18824468 None:intergenic 30.0%
!! AGATGAAACATCCATTTTTG+TGG + chr5_4:18824454-18824473 None:intergenic 30.0%
!!! AACTTTTTTCAGGGTATTGA+TGG - chr5_4:18824524-18824543 Msa0841980:intron 30.0%
GTTGATCTTGATAAATCTTG+TGG - chr5_4:18824706-18824725 Msa0841980:CDS 30.0%
TGATAAATCTTGTGGATTTC+AGG - chr5_4:18824714-18824733 Msa0841980:CDS 30.0%
GATATAACAGACACAAAAGA+AGG + chr5_4:18824869-18824888 None:intergenic 30.0%
ACCGATGAACTTTCATAATT+AGG - chr5_4:18824951-18824970 Msa0841980:intron 30.0%
!! GATTTTTCAAAACCAATGGT+TGG + chr5_4:18825080-18825099 None:intergenic 30.0%
!! GCTTGATTTTTCAAAACCAA+TGG + chr5_4:18825084-18825103 None:intergenic 30.0%
TAGTAATCTGTTAACTTTGG+TGG - chr5_4:18825257-18825276 Msa0841980:CDS 30.0%
! TTTCAAAAGCTTTTCAGCAA+TGG + chr5_4:18825336-18825355 None:intergenic 30.0%
ATCAGAAAAACTGATCACAA+TGG + chr5_4:18825455-18825474 None:intergenic 30.0%
! GTTTTTCTGATTAATGGAAG+AGG - chr5_4:18825464-18825483 Msa0841980:five_prime_UTR 30.0%
!! TATAGCAGATGAAAAGCATT+AGG - chr5_4:18825496-18825515 Msa0841980:five_prime_UTR 30.0%
GTTTATGCTATAACTGCTTA+AGG + chr5_4:18825691-18825710 None:intergenic 30.0%
TCTAAAGACATTAACGAGTC+TGG + chr5_4:18820173-18820192 None:intergenic 35.0%
TGCTTCTTCTGTTTACTACA+AGG - chr5_4:18820741-18820760 Msa0841980:intron 35.0%
TTATCATACACAGCTTCATC+AGG + chr5_4:18820897-18820916 None:intergenic 35.0%
TGATGAAGCTGTGTATGATA+AGG - chr5_4:18820896-18820915 Msa0841980:CDS 35.0%
TAAGGAGAATTCACGTGTTT+CGG - chr5_4:18820914-18820933 Msa0841980:CDS 35.0%
ATTAATATCCGGTGCATCTT+TGG + chr5_4:18821099-18821118 None:intergenic 35.0%
GTTAGAAAAGAGACTTCTTC+TGG - chr5_4:18821128-18821147 Msa0841980:intron 35.0%
AGTGGAGAATTCAATTGCTT+TGG + chr5_4:18821235-18821254 None:intergenic 35.0%
ATCAGAGATGTAGACACTAT+TGG - chr5_4:18821568-18821587 Msa0841980:intron 35.0%
!! CAGCTCTAAAGAAAACAGAT+AGG + chr5_4:18821635-18821654 None:intergenic 35.0%
!!! CTATCTGTTTTCTTTAGAGC+TGG - chr5_4:18821633-18821652 Msa0841980:intron 35.0%
! TGTTGTGAAGAAGCATGATA+TGG - chr5_4:18821740-18821759 Msa0841980:CDS 35.0%
GGTAGACGAAATTTCTCATT+AGG - chr5_4:18821761-18821780 Msa0841980:CDS 35.0%
! AGAGAAGTGAAGTTTTCTGA+TGG + chr5_4:18821865-18821884 None:intergenic 35.0%
AAATACAGTGAAGGTTATCC+TGG - chr5_4:18821922-18821941 Msa0841980:CDS 35.0%
TATCCTGGAGCAAGATATTA+CGG - chr5_4:18821937-18821956 Msa0841980:CDS 35.0%
GATTCAGTCTGGTACTTAAA+AGG + chr5_4:18822056-18822075 None:intergenic 35.0%
! TAAGGTTTGAAATCTGCACT+TGG - chr5_4:18822326-18822345 Msa0841980:CDS 35.0%
GAAACCTCATGATAGAATCA+TGG - chr5_4:18822521-18822540 Msa0841980:intron 35.0%
TCTACAATCGATGTATGGAT+TGG - chr5_4:18822629-18822648 Msa0841980:CDS 35.0%
!! TGCAGATATCTTTTTGGTGT+CGG + chr5_4:18822828-18822847 None:intergenic 35.0%
! AGAGACTGCAGATATCTTTT+TGG + chr5_4:18822834-18822853 None:intergenic 35.0%
TGAGACAATGCCATATAGAT+TGG - chr5_4:18822862-18822881 Msa0841980:intron 35.0%
GTGCTTTCATCCAATCTATA+TGG + chr5_4:18822875-18822894 None:intergenic 35.0%
! TATAGATTGGATGAAAGCAC+AGG - chr5_4:18822875-18822894 Msa0841980:intron 35.0%
! AGGATACATTGATTATGACC+AGG - chr5_4:18822895-18822914 Msa0841980:CDS 35.0%
AAAGAAACTGCAAACATACC+TGG + chr5_4:18822916-18822935 None:intergenic 35.0%
! GGTATGTTTGCAGTTTCTTT+TGG - chr5_4:18822916-18822935 Msa0841980:CDS 35.0%
!!! AATTAGTTTTGGCCTGAAGA+GGG + chr5_4:18823049-18823068 None:intergenic 35.0%
ATAATCATACAGACGTGCAT+AGG + chr5_4:18823088-18823107 None:intergenic 35.0%
CTGCATAATCAAAAGGTGAA+GGG + chr5_4:18823334-18823353 None:intergenic 35.0%
TCTGCATAATCAAAAGGTGA+AGG + chr5_4:18823335-18823354 None:intergenic 35.0%
!!! AGCTATGATCTTTTTCAGGA+AGG - chr5_4:18823400-18823419 Msa0841980:intron 35.0%
!!! GCTATGATCTTTTTCAGGAA+GGG - chr5_4:18823401-18823420 Msa0841980:intron 35.0%
AGTCAACAAACAAGGAAAAG+AGG - chr5_4:18823433-18823452 Msa0841980:CDS 35.0%
ATCAAGAAAAATGTGGACAG+TGG + chr5_4:18823784-18823803 None:intergenic 35.0%
TTAAGAAAAGGGTTTGTCTG+AGG - chr5_4:18823870-18823889 Msa0841980:CDS 35.0%
TAAGAAAAGGGTTTGTCTGA+GGG - chr5_4:18823871-18823890 Msa0841980:CDS 35.0%
! GTTTTTCCATTTGTGGATTC+AGG - chr5_4:18823996-18824015 Msa0841980:intron 35.0%
TCTTGGTATGCTTTATACTC+TGG + chr5_4:18824030-18824049 None:intergenic 35.0%
ATGTCAGTCAACACAACATA+AGG - chr5_4:18824104-18824123 Msa0841980:CDS 35.0%
TGTCAGTCAACACAACATAA+GGG - chr5_4:18824105-18824124 Msa0841980:CDS 35.0%
! AAAGGTTATGAGCTTGTTTC+TGG - chr5_4:18824206-18824225 Msa0841980:intron 35.0%
!! GACTGAGAATCATCTAGTTT+TGG - chr5_4:18824232-18824251 Msa0841980:intron 35.0%
CTCGACAATGCTTATATGTA+TGG + chr5_4:18824295-18824314 None:intergenic 35.0%
AGTTCGAGAGAACATTGTTA+TGG - chr5_4:18824411-18824430 Msa0841980:intron 35.0%
GCTAATAAAAACACTGTTCC+TGG - chr5_4:18824587-18824606 Msa0841980:intron 35.0%
CAAGATCAACTAGTTGAACA+AGG + chr5_4:18824696-18824715 None:intergenic 35.0%
TTTCGATGCATCTGTGAATT+TGG - chr5_4:18824797-18824816 Msa0841980:intron 35.0%
!! GAATTTGGCTTTGAAGATCA+AGG - chr5_4:18824812-18824831 Msa0841980:intron 35.0%
ATATTAGCTGTATGGTTGCT+TGG - chr5_4:18824906-18824925 Msa0841980:intron 35.0%
TCAGCAATGGACAAGAAAAA+CGG + chr5_4:18825323-18825342 None:intergenic 35.0%
TAAGATCAAACTTCTTCCAC+TGG - chr5_4:18825366-18825385 Msa0841980:five_prime_UTR 35.0%
! GACGTATTATGTTTGCTAAG+TGG - chr5_4:18825399-18825418 Msa0841980:five_prime_UTR 35.0%
TTTCTGATTAATGGAAGAGG+AGG - chr5_4:18825467-18825486 Msa0841980:five_prime_UTR 35.0%
AATTTCATTTGGACCCTGTT+TGG - chr5_4:18825654-18825673 Msa0841980:five_prime_UTR 35.0%
CTGAAAACAGCTTATGAACA+TGG - chr5_4:18825812-18825831 Msa0841980:five_prime_UTR 35.0%
!! TCTCATCTTTGAGATGGCAA+TGG - chr5_4:18820660-18820679 Msa0841980:intron 40.0%
GCAATTGAATTCTCCACTTG+AGG - chr5_4:18821237-18821256 Msa0841980:CDS 40.0%
TCAGGATCAATTTCCTCAAG+TGG + chr5_4:18821253-18821272 None:intergenic 40.0%
AGCTTGAGAAAGCTAGACAA+TGG - chr5_4:18821290-18821309 Msa0841980:intron 40.0%
TGAGAAAGCTAGACAATGGA+AGG - chr5_4:18821294-18821313 Msa0841980:intron 40.0%
ACTGATAAGTTAGTCGGAAG+AGG - chr5_4:18821413-18821432 Msa0841980:CDS 40.0%
!!! TATTATTTTGGTGAAGGGGC+TGG - chr5_4:18821831-18821850 Msa0841980:intron 40.0%
CTATCTGTTATGCAAGCTGT+TGG - chr5_4:18821883-18821902 Msa0841980:intron 40.0%
! TCTCTCATGAGCTTTTCTGA+AGG - chr5_4:18822377-18822396 Msa0841980:intron 40.0%
AGTGCCATGATTCTATCATG+AGG + chr5_4:18822528-18822547 None:intergenic 40.0%
ACATCTTTCTCATGGTTACC+AGG - chr5_4:18822566-18822585 Msa0841980:CDS 40.0%
TTTCTCATGGTTACCAGGTA+TGG - chr5_4:18822571-18822590 Msa0841980:CDS 40.0%
AGATGATAGTTGACCATACC+TGG + chr5_4:18822587-18822606 None:intergenic 40.0%
!! TCGATGTATGGATTGGCTTA+TGG - chr5_4:18822636-18822655 Msa0841980:CDS 40.0%
!!! CAATTAGTTTTGGCCTGAAG+AGG + chr5_4:18823050-18823069 None:intergenic 40.0%
AGGCCAAAACTAATTGTTGC+TGG - chr5_4:18823054-18823073 Msa0841980:intron 40.0%
!! GCACCAGCAACAATTAGTTT+TGG + chr5_4:18823060-18823079 None:intergenic 40.0%
GCAAGGTAACACATTCACAA+GGG - chr5_4:18823118-18823137 Msa0841980:CDS 40.0%
AGCTGTGATGTTAGCAGATA+TGG - chr5_4:18823274-18823293 Msa0841980:intron 40.0%
AAAAAGATCATAGCTCCACG+TGG + chr5_4:18823395-18823414 None:intergenic 40.0%
! GTGGAGCTATGATCTTTTTC+AGG - chr5_4:18823396-18823415 Msa0841980:intron 40.0%
! AATTTTGTTCAGGCCTTCAG+GGG + chr5_4:18823463-18823482 None:intergenic 40.0%
! GAATTTTGTTCAGGCCTTCA+GGG + chr5_4:18823464-18823483 None:intergenic 40.0%
! TGAATTTTGTTCAGGCCTTC+AGG + chr5_4:18823465-18823484 None:intergenic 40.0%
!! GAAGGTGTTCTATGACTATG+AGG - chr5_4:18823618-18823637 Msa0841980:intron 40.0%
CAGCTAAACCAGTAATGGTA+TGG + chr5_4:18823693-18823712 None:intergenic 40.0%
AAGAAAAGGGTTTGTCTGAG+GGG - chr5_4:18823872-18823891 Msa0841980:CDS 40.0%
TGAGGGGTTTATTTGAAGAG+TGG - chr5_4:18823888-18823907 Msa0841980:intron 40.0%
TTGTAGCCTGAATCCACAAA+TGG + chr5_4:18824005-18824024 None:intergenic 40.0%
GTATAAAGCATACCAAGAGC+AGG - chr5_4:18824032-18824051 Msa0841980:intron 40.0%
CAATTGCGCAAAATTTGCAC+AGG - chr5_4:18824062-18824081 Msa0841980:CDS 40.0%
TTAATCTCTGTGGTCCAACA+AGG + chr5_4:18824138-18824157 None:intergenic 40.0%
!! GTTATGAGCTTGTTTCTGGT+GGG - chr5_4:18824210-18824229 Msa0841980:intron 40.0%
TGTATGGTCAAAGAGTTGTC+AGG + chr5_4:18824279-18824298 None:intergenic 40.0%
! ACGCAAATGATTAGCACTGA+AGG + chr5_4:18824341-18824360 None:intergenic 40.0%
TTGTGTCCGATCCACAAAAA+TGG - chr5_4:18824440-18824459 Msa0841980:intron 40.0%
AACTCCTGCTCTTACTTCAA+GGG - chr5_4:18824737-18824756 Msa0841980:CDS 40.0%
CACTGCTGATATTAGCTGTA+TGG - chr5_4:18824898-18824917 Msa0841980:intron 40.0%
GCAAAACAATTCCCAACCAT+TGG - chr5_4:18825065-18825084 Msa0841980:intron 40.0%
TACGTCAGAGAATAATCCAG+TGG + chr5_4:18825385-18825404 None:intergenic 40.0%
! TTATGTTTGCTAAGTGGCAG+TGG - chr5_4:18825405-18825424 Msa0841980:five_prime_UTR 40.0%
GGAAGTTGCTTATCCAAACA+GGG + chr5_4:18825670-18825689 None:intergenic 40.0%
AGGAAGTTGCTTATCCAAAC+AGG + chr5_4:18825671-18825690 None:intergenic 40.0%
!! CTTTGAGATGGCAATGGCAA+TGG - chr5_4:18820666-18820685 Msa0841980:intron 45.0%
!! ACAGAAGAAGCACTGAAGAG+AGG + chr5_4:18820733-18820752 None:intergenic 45.0%
AACAAAATCACGTGTCACCG+CGG + chr5_4:18821012-18821031 None:intergenic 45.0%
CCGGTGCATCTTTGGATTAA+CGG + chr5_4:18821091-18821110 None:intergenic 45.0%
CCGTTAATCCAAAGATGCAC+CGG - chr5_4:18821088-18821107 Msa0841980:intron 45.0%
TGAATTTAGCATGCCTCCCA+TGG - chr5_4:18821438-18821457 Msa0841980:CDS 45.0%
TCTCTAAACCATACCATGGG+AGG + chr5_4:18821454-18821473 None:intergenic 45.0%
ATCCAACCGAAATGCTTCCA+AGG + chr5_4:18822150-18822169 None:intergenic 45.0%
TTCGGTTGGATCCAGCTAAA+TGG - chr5_4:18822159-18822178 Msa0841980:intron 45.0%
TCGGTTGGATCCAGCTAAAT+GGG - chr5_4:18822160-18822179 Msa0841980:intron 45.0%
TTCTTACCTCCCCATTTAGC+TGG + chr5_4:18822173-18822192 None:intergenic 45.0%
! AATCAGCAAAGAGCACGCTA+AGG - chr5_4:18822308-18822327 Msa0841980:CDS 45.0%
TGCACGTTCACTGCAAATCA+GGG + chr5_4:18822453-18822472 None:intergenic 45.0%
TTTGACGGTGAACCAGACAA+AGG + chr5_4:18822477-18822496 None:intergenic 45.0%
GAGAAAGATGTCCTCCATGA+GGG + chr5_4:18822557-18822576 None:intergenic 45.0%
TGAGAAAGATGTCCTCCATG+AGG + chr5_4:18822558-18822577 None:intergenic 45.0%
CATGGAGGACATCTTTCTCA+TGG - chr5_4:18822558-18822577 Msa0841980:CDS 45.0%
AGAAATCTGCTACCCTCTTC+AGG - chr5_4:18823034-18823053 Msa0841980:intron 45.0%
TGATTATGCACGCATTCGCA+AGG - chr5_4:18823101-18823120 Msa0841980:CDS 45.0%
CGCAAGGTAACACATTCACA+AGG - chr5_4:18823117-18823136 Msa0841980:CDS 45.0%
GCAGATATGGCACATATCAG+TGG - chr5_4:18823287-18823306 Msa0841980:intron 45.0%
TATGGCACATATCAGTGGAC+TGG - chr5_4:18823292-18823311 Msa0841980:intron 45.0%
! ACGAAGTGACTTGTGAGTTG+TGG + chr5_4:18823369-18823388 None:intergenic 45.0%
ACAACTCACAAGTCACTTCG+TGG - chr5_4:18823368-18823387 Msa0841980:intron 45.0%
ATCAATCAAGCTGTCTTCCC+TGG - chr5_4:18823646-18823665 Msa0841980:intron 45.0%
CCAGTAATGGTATGGTTGTG+AGG + chr5_4:18823685-18823704 None:intergenic 45.0%
CCTCACAACCATACCATTAC+TGG - chr5_4:18823682-18823701 Msa0841980:intron 45.0%
CGCAACAGCTAAACCAGTAA+TGG + chr5_4:18823698-18823717 None:intergenic 45.0%
TTTAGCTGTTGCGTTGAAGC+AGG - chr5_4:18823705-18823724 Msa0841980:intron 45.0%
ATACCACACACACTCTCAGT+CGG + chr5_4:18823941-18823960 None:intergenic 45.0%
AATTGCTGAGAACCTGCTCT+TGG + chr5_4:18824047-18824066 None:intergenic 45.0%
AGTCAACACAACATAAGGGC+TGG - chr5_4:18824109-18824128 Msa0841980:CDS 45.0%
!! GGTTATGAGCTTGTTTCTGG+TGG - chr5_4:18824209-18824228 Msa0841980:intron 45.0%
TTCCAACACCTTCTCAACTC+TGG + chr5_4:18824552-18824571 None:intergenic 45.0%
GAACTCCTGCTCTTACTTCA+AGG - chr5_4:18824736-18824755 Msa0841980:CDS 45.0%
ACTCCTGCTCTTACTTCAAG+GGG - chr5_4:18824738-18824757 Msa0841980:CDS 45.0%
AATCCCCTTGAAGTAAGAGC+AGG + chr5_4:18824744-18824763 None:intergenic 45.0%
AAGATCAAGGCAGAGAGCAA+AGG - chr5_4:18824825-18824844 Msa0841980:intron 45.0%
CTCAACATCATGACGAAGCT+TGG + chr5_4:18825039-18825058 None:intergenic 45.0%
CAAGCTTCGTCATGATGTTG+AGG - chr5_4:18825037-18825056 Msa0841980:intron 45.0%
GGCAGTGGTGGTAAAGATTA+TGG - chr5_4:18825420-18825439 Msa0841980:five_prime_UTR 45.0%
!! GCAGATGAAAAGCATTAGGC+TGG - chr5_4:18825500-18825519 Msa0841980:five_prime_UTR 45.0%
!! TTTATGAAATAATAAAAAAA+TGG + chr5_4:18820498-18820517 None:intergenic 5.0%
!!! AGTTTTTAAAATTTTTAAAA+TGG - chr5_4:18823809-18823828 Msa0841980:intron 5.0%
CAATGGCAATGGCTCTTCGT+AGG - chr5_4:18820677-18820696 Msa0841980:intron 50.0%
CGGTGAGTTTCACAAAACCG+CGG - chr5_4:18820992-18821011 Msa0841980:CDS 50.0%
TTAGCATGCCTCCCATGGTA+TGG - chr5_4:18821443-18821462 Msa0841980:CDS 50.0%
CCTCCGTAATATCTTGCTCC+AGG + chr5_4:18821943-18821962 None:intergenic 50.0%
CCTGGAGCAAGATATTACGG+AGG - chr5_4:18821940-18821959 Msa0841980:CDS 50.0%
! ACTATGCCAAAAGCGTGCCT+TGG - chr5_4:18822130-18822149 Msa0841980:intron 50.0%
! ATGCTTCCAAGGCACGCTTT+TGG + chr5_4:18822139-18822158 None:intergenic 50.0%
!! AGCGTGCCTTGGAAGCATTT+CGG - chr5_4:18822141-18822160 Msa0841980:intron 50.0%
!! TGCCTTGGAAGCATTTCGGT+TGG - chr5_4:18822145-18822164 Msa0841980:intron 50.0%
CGGTTGGATCCAGCTAAATG+GGG - chr5_4:18822161-18822180 Msa0841980:intron 50.0%
TTGGATCCAGCTAAATGGGG+AGG - chr5_4:18822164-18822183 Msa0841980:intron 50.0%
GCACGTTCACTGCAAATCAG+GGG + chr5_4:18822452-18822471 None:intergenic 50.0%
CTGCACGTTCACTGCAAATC+AGG + chr5_4:18822454-18822473 None:intergenic 50.0%
ATGGCACTTGATCTCCCTCA+TGG - chr5_4:18822540-18822559 Msa0841980:intron 50.0%
! ATACCGACTGAGAGTGTGTG+TGG - chr5_4:18823935-18823954 Msa0841980:intron 50.0%
!! ATAAGGGCTGGTCTCCTTGT+TGG - chr5_4:18824121-18824140 Msa0841980:CDS 50.0%
!! TTGCAGGCTCTGAGTGAGAA+AGG - chr5_4:18824188-18824207 Msa0841980:intron 50.0%
TGATGGCTCCAGAGTTGAGA+AGG - chr5_4:18824541-18824560 Msa0841980:intron 50.0%
! CTCCAGAGTTGAGAAGGTGT+TGG - chr5_4:18824547-18824566 Msa0841980:intron 50.0%
TCCTGGAGATGTGTCTGCTA+TGG - chr5_4:18824604-18824623 Msa0841980:intron 50.0%
ACCATAGCAGACACATCTCC+AGG + chr5_4:18824608-18824627 None:intergenic 50.0%
GATGTGTCTGCTATGGTTCC+TGG - chr5_4:18824611-18824630 Msa0841980:intron 50.0%
CTATGGTTCCTGGTGGTATC+AGG - chr5_4:18824621-18824640 Msa0841980:intron 50.0%
GTTCCTGGTGGTATCAGGAT+GGG - chr5_4:18824626-18824645 Msa0841980:intron 50.0%
ATACCCATCCTGATACCACC+AGG + chr5_4:18824632-18824651 None:intergenic 50.0%
TACTTCAAGGGGATTCGTCG+AGG - chr5_4:18824749-18824768 Msa0841980:CDS 50.0%
CGTCGAGGAGGATTTCGTTA+AGG - chr5_4:18824764-18824783 Msa0841980:intron 50.0%
AATCTCTGACTGCACGTAGG+AGG + chr5_4:18825015-18825034 None:intergenic 50.0%
GGAAATCTCTGACTGCACGT+AGG + chr5_4:18825018-18825037 None:intergenic 50.0%
! TGTTTGCTAAGTGGCAGTGG+TGG - chr5_4:18825408-18825427 Msa0841980:five_prime_UTR 50.0%
GTGAACGTGCAGCCTTTGTC+TGG - chr5_4:18822462-18822481 Msa0841980:intron 55.0%
GCACTTGATCTCCCTCATGG+AGG - chr5_4:18822543-18822562 Msa0841980:intron 55.0%
!! ATCAGTGGACTGGTTGCAGC+TGG - chr5_4:18823302-18823321 Msa0841980:intron 55.0%
AAGTCACTTCGTGGACCACG+TGG - chr5_4:18823377-18823396 Msa0841980:intron 55.0%
! GAAAAGAGGTGCACCCCTGA+AGG - chr5_4:18823447-18823466 Msa0841980:CDS 55.0%
GTGTCTGCTATGGTTCCTGG+TGG - chr5_4:18824614-18824633 Msa0841980:intron 55.0%
GGTTCCTGGTGGTATCAGGA+TGG - chr5_4:18824625-18824644 Msa0841980:intron 55.0%
TTCAAGGGGATTCGTCGAGG+AGG - chr5_4:18824752-18824771 Msa0841980:CDS 55.0%
GCTGTCTTCCCTGGACTGCA+AGG - chr5_4:18823655-18823674 Msa0841980:intron 60.0%
GTCTTCCCTGGACTGCAAGG+TGG - chr5_4:18823658-18823677 Msa0841980:intron 60.0%
GAGGACCACCTTGCAGTCCA+GGG + chr5_4:18823666-18823685 None:intergenic 60.0%
TGAGGACCACCTTGCAGTCC+AGG + chr5_4:18823667-18823686 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 18820131 18825871 18820131 ID=Msa0841980;Name=Msa0841980
chr5_4 mRNA 18820131 18825871 18820131 ID=Msa0841980-mRNA-1;Parent=Msa0841980;Name=Msa0841980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=519|1|1|1|0.87|0.76|17|469|518
chr5_4 exon 18820131 18820577 18820131 ID=Msa0841980-mRNA-1:exon:7847;Parent=Msa0841980-mRNA-1
chr5_4 exon 18820859 18821029 18820859 ID=Msa0841980-mRNA-1:exon:7846;Parent=Msa0841980-mRNA-1
chr5_4 exon 18821156 18821266 18821156 ID=Msa0841980-mRNA-1:exon:7845;Parent=Msa0841980-mRNA-1
chr5_4 exon 18821355 18821466 18821355 ID=Msa0841980-mRNA-1:exon:7844;Parent=Msa0841980-mRNA-1
chr5_4 exon 18821731 18821808 18821731 ID=Msa0841980-mRNA-1:exon:7843;Parent=Msa0841980-mRNA-1
chr5_4 exon 18821919 18821984 18821919 ID=Msa0841980-mRNA-1:exon:7842;Parent=Msa0841980-mRNA-1
chr5_4 exon 18822276 18822380 18822276 ID=Msa0841980-mRNA-1:exon:7841;Parent=Msa0841980-mRNA-1
chr5_4 exon 18822548 18822745 18822548 ID=Msa0841980-mRNA-1:exon:7840;Parent=Msa0841980-mRNA-1
chr5_4 exon 18822880 18822972 18822880 ID=Msa0841980-mRNA-1:exon:7839;Parent=Msa0841980-mRNA-1
chr5_4 exon 18823086 18823178 18823086 ID=Msa0841980-mRNA-1:exon:7838;Parent=Msa0841980-mRNA-1
chr5_4 exon 18823415 18823539 18823415 ID=Msa0841980-mRNA-1:exon:7837;Parent=Msa0841980-mRNA-1
chr5_4 exon 18823817 18823893 18823817 ID=Msa0841980-mRNA-1:exon:7836;Parent=Msa0841980-mRNA-1
chr5_4 exon 18824034 18824155 18824034 ID=Msa0841980-mRNA-1:exon:7835;Parent=Msa0841980-mRNA-1
chr5_4 exon 18824687 18824773 18824687 ID=Msa0841980-mRNA-1:exon:7834;Parent=Msa0841980-mRNA-1
chr5_4 exon 18825067 18825117 18825067 ID=Msa0841980-mRNA-1:exon:7833;Parent=Msa0841980-mRNA-1
chr5_4 exon 18825240 18825524 18825240 ID=Msa0841980-mRNA-1:exon:7832;Parent=Msa0841980-mRNA-1
chr5_4 exon 18825548 18825871 18825548 ID=Msa0841980-mRNA-1:exon:7831;Parent=Msa0841980-mRNA-1
chr5_4 five_prime_UTR 18825548 18825871 18825548 ID=Msa0841980-mRNA-1:five_prime_utr;Parent=Msa0841980-mRNA-1
chr5_4 five_prime_UTR 18825330 18825524 18825330 ID=Msa0841980-mRNA-1:five_prime_utr;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18825240 18825329 18825240 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18825067 18825117 18825067 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18824687 18824773 18824687 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18824034 18824155 18824034 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18823817 18823893 18823817 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18823415 18823539 18823415 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18823086 18823178 18823086 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18822880 18822972 18822880 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18822548 18822745 18822548 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18822276 18822380 18822276 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18821919 18821984 18821919 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18821731 18821808 18821731 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18821355 18821466 18821355 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18821156 18821266 18821156 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 CDS 18820881 18821029 18820881 ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4 three_prime_UTR 18820859 18820880 18820859 ID=Msa0841980-mRNA-1:three_prime_utr;Parent=Msa0841980-mRNA-1
chr5_4 three_prime_UTR 18820131 18820577 18820131 ID=Msa0841980-mRNA-1:three_prime_utr;Parent=Msa0841980-mRNA-1
Gene Sequence

>Msa0841980

ATGGCAATGGCAATGGCTCTTCGTAGGCTTTCTTCTTCAATTAACAAATCTTCACGTCCTCTCTTCAGTGCTTCTTCTGTTTACTACAAGTCATCTTTGCCTGATGAAGCTGTGTATGATAAGGAGAATTCACGTGTTTCGTGGCCAAAGCAATTGAATTCTCCACTTGAGGAAATTGATCCTGAAATTGCTGATATTATTGAGCTTGAGAAAGCTAGACAATGGAAGGGGCTGGAACTGATTCCATCAGAAAACTTCACTTCTCTATCTGTTATGCAAGCTGTTGGATCTATCATGACAAACAAATACAGTGAAGGTTATCCTGGAGCAAGATATTACGGAGGAAATGAATATATTGACATGGCAGAAACACTATGCCAAAAGCGTGCCTTGGAAGCATTTCGGTTGGATCCAGCTAAATGGGGAGTGAACGTGCAGCCTTTGTCTGGTTCACCGTCAAATTTTCATGTTTACACTGCATTGCTGAAACCTCATGATAGAATCATGGCACTTGATCTCCCTCATGGAGGACATCTTTCTCATGGTTACCAGACCGACACCAAAAAGATATCTGCAGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGATTATGACCAGCTAGAGAAATCTGCTACCCTCTTCAGGCCAAAACTAATTGTTGCTGGTGCTAGTGCCTATGCACGTCTGTATGATTATGCACGCATTCGCAAGGTGTGCGATAAACAAAAAGCTGTGATGTTAGCAGATATGGCACATATCAGTGGACTGGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATGTAGTGACTACCACAACTCACAAGTCACTTCGTGGACCACGTGGAGCTATGATCTTTTTCAGGAAGGGATTAAAAGAAGTCAACAAACAAGGAAAAGAGGTGTTCTATGACTATGAGGACAAAATCAATCAAGCTGTCTTCCCTGGACTGCAAGGTGGTCCTCACAACCATACCATTACTGGTTTAGCTGTTGCGTTGAAGCAGGCTACAACTCCAGAGTATAAAGCATACCAAGAGCAGGTTCTCAGCAATTGCGCAAAATTTGCACAGGCTCTGAGTGAGAAAGGTTATGAGCTTGTTTCTGGTGGGACTGAGAATCATCTAGTTTTGGTGAATCTCAAGAATAAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTACATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCTATGGTTCCTGGTGGTATCAGGATGGGAACTCCTGCTCTTACTTCAAGGGGATTCGTCGAGGAGGATTTCGTTAAGGTAGCAGAGTATTTCGATGCATCTGTGAATTTGGCTTTGAAGATCAAGGCAGAGAGCAAAGGAACAAAATTAAAGGACTTTGTAGAAACATTGCAATCATCCTCCTACGTGCAGTCAGAGATTTCCAAGCTTCGTCATGATGTTGAGGAGTTCGCAAAACAATTCCCAACCATTGGTTTTGAAAAATCAAGCATGAAGTACAACAAATAA

Protein sequence

>Msa0841980

MAMAMALRRLSSSINKSSRPLFSASSVYYKSSLPDEAVYDKENSRVSWPKQLNSPLEEIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSIMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCAKFAQALSEKGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVNLALKIKAESKGTKLKDFVETLQSSSYVQSEISKLRHDVEEFAKQFPTIGFEKSSMKYNK*