AlfalfaGEDB | Msa0841980

M. sativa cultivar zhongmu-4 / Msa0841980

KEGG: K00600
GO: GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
PFAM: PF00464.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841980	XP_003612954.1	99.807	518	1	0	1	518	1	518	0.0	1073

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841980	sp\|P34899\|GLYM_PEA	95.560	518	23	0	1	518	1	518	0.0	1040

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841980	A9YWS0	99.807	518	1	0	1	518	1	518	0.0	1073

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0841980	0.828545	8.472800e-55	-8.615850e-47
Msa0000220	Msa0841980	0.908140	2.366784e-81	-8.615850e-47
Msa0001040	Msa0841980	0.811388	7.179927e-51	-8.615850e-47
Msa0001460	Msa0841980	0.828777	7.445398e-55	-8.615850e-47
Msa0001540	Msa0841980	0.809565	1.776954e-50	-8.615850e-47
Msa0002060	Msa0841980	0.803715	3.054153e-49	-8.615850e-47
Msa0003470	Msa0841980	0.815749	7.880306e-52	-8.615850e-47
Msa0005160	Msa0841980	0.835215	1.909823e-56	-8.615850e-47
Msa0005690	Msa0841980	0.807936	3.962405e-50	-8.615850e-47
Msa0006050	Msa0841980	0.811225	7.786165e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841980	MtrunA17_Chr5g0411661	99.807	518	1	0	1	518	1	518	0.0	1073
Msa0841980	MtrunA17_Chr5g0428001	83.915	516	74	1	3	518	1	507	0.0	897
Msa0841980	MtrunA17_Chr2g0285171	59.825	458	175	2	52	508	83	532	0.0	573
Msa0841980	MtrunA17_Chr8g0378091	58.369	466	187	4	53	516	9	469	0.0	557
Msa0841980	MtrunA17_Chr3g0121851	58.584	466	186	4	53	516	9	469	0.0	555
Msa0841980	MtrunA17_Chr2g0277581	54.140	471	201	6	47	510	130	592	1.98e-173	501
Msa0841980	MtrunA17_Chr3g0115291	53.291	471	202	6	46	509	116	575	9.18e-171	494
Msa0841980	MtrunA17_Chr7g0268951	64.571	175	62	0	81	255	1	175	1.21e-76	239
Msa0841980	MtrunA17_Chr1g0186271	37.048	332	151	7	171	501	10	284	7.41e-56	189
Msa0841980	MtrunA17_Chr7g0268941	46.358	151	80	1	360	509	16	166	2.68e-38	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0841980	AT4G37930.1	88.953	516	56	1	1	516	1	515	0.0	968
Msa0841980	AT5G26780.1	85.106	517	76	1	3	518	1	517	0.0	923
Msa0841980	AT5G26780.4	85.106	517	76	1	3	518	1	517	0.0	923
Msa0841980	AT5G26780.2	82.739	533	75	2	3	518	1	533	0.0	914
Msa0841980	AT5G26780.3	82.739	533	75	2	3	518	1	533	0.0	914
Msa0841980	AT4G32520.2	58.753	497	187	6	22	508	40	528	0.0	602
Msa0841980	AT4G32520.1	58.753	497	187	6	22	508	40	528	0.0	602
Msa0841980	AT4G13930.1	58.155	466	188	4	53	516	9	469	0.0	553
Msa0841980	AT4G13890.1	56.209	459	194	4	53	509	9	462	0.0	527
Msa0841980	AT4G13890.2	59.008	383	155	2	53	433	9	391	2.63e-165	474

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Find 129 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTATGAGCTTGTTTC+TGG	0.242132	5_4:-18821774	Msa0841980:CDS
AAATACAGTGAAGGTTATCC+TGG	0.420592	5_4:-18824058	Msa0841980:CDS
AACTCCTGCTCTTACTTCAA+GGG	0.559611	5_4:-18821243	Msa0841980:CDS
AAGATCAAGGCAGAGAGCAA+AGG	0.565204	5_4:-18821155	Msa0841980:intron
AAGTCACTTCGTGGACCACG+TGG	0.667056	5_4:-18822603	Msa0841980:CDS
AATCCCCTTGAAGTAAGAGC+AGG	0.586622	5_4:+18821239	None:intergenic
AATCTCTGACTGCACGTAGG+AGG	0.581158	5_4:+18820968	None:intergenic
AATTGCTGAGAACCTGCTCT+TGG	0.549215	5_4:+18821936	None:intergenic
AATTTCATTTGGACCCTGTT+TGG	0.342033	5_4:-18820326	Msa0841980:three_prime_UTR
ACAACTCACAAGTCACTTCG+TGG	0.500888	5_4:-18822612	Msa0841980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAGATGAGATAGATAGA+TGG	+	chr5_4:18820652-18820671	None:intergenic	30.0%
TTATCTCTAAACCATACCAT+GGG	+	chr5_4:18821457-18821476	None:intergenic	30.0%
ATTATCTCTAAACCATACCA+TGG	+	chr5_4:18821458-18821477	None:intergenic	30.0%
TTAACACACAATCAAACAGT+TGG	+	chr5_4:18821703-18821722	None:intergenic	30.0%
ATGACAAACAAATACAGTGA+AGG	-	chr5_4:18821913-18821932	Msa0841980:intron	30.0%
CAAGACAATAGTTTCTTTGT+TGG	-	chr5_4:18822195-18822214	Msa0841980:intron	30.0%
CAAGTATAATATCGCTTGTT+TGG	-	chr5_4:18822240-18822259	Msa0841980:intron	30.0%
TGAAATCTACAATCGATGTA+TGG	-	chr5_4:18822624-18822643	Msa0841980:CDS	30.0%
TATAGTCATGAATTCTGTCT+TGG	-	chr5_4:18822744-18822763	Msa0841980:intron	30.0%
TGTTTCATGAGTTCAACTTA+GGG	+	chr5_4:18823219-18823238	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	18820131	18825871	18820131	ID=Msa0841980;Name=Msa0841980
chr5_4	mRNA	18820131	18825871	18820131	ID=Msa0841980-mRNA-1;Parent=Msa0841980;Name=Msa0841980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=519\|1\|1\|1\|0.87\|0.76\|17\|469\|518
chr5_4	exon	18820131	18820577	18820131	ID=Msa0841980-mRNA-1:exon:7847;Parent=Msa0841980-mRNA-1
chr5_4	exon	18820859	18821029	18820859	ID=Msa0841980-mRNA-1:exon:7846;Parent=Msa0841980-mRNA-1
chr5_4	exon	18821156	18821266	18821156	ID=Msa0841980-mRNA-1:exon:7845;Parent=Msa0841980-mRNA-1
chr5_4	exon	18821355	18821466	18821355	ID=Msa0841980-mRNA-1:exon:7844;Parent=Msa0841980-mRNA-1
chr5_4	exon	18821731	18821808	18821731	ID=Msa0841980-mRNA-1:exon:7843;Parent=Msa0841980-mRNA-1
chr5_4	exon	18821919	18821984	18821919	ID=Msa0841980-mRNA-1:exon:7842;Parent=Msa0841980-mRNA-1
chr5_4	exon	18822276	18822380	18822276	ID=Msa0841980-mRNA-1:exon:7841;Parent=Msa0841980-mRNA-1
chr5_4	exon	18822548	18822745	18822548	ID=Msa0841980-mRNA-1:exon:7840;Parent=Msa0841980-mRNA-1
chr5_4	exon	18822880	18822972	18822880	ID=Msa0841980-mRNA-1:exon:7839;Parent=Msa0841980-mRNA-1
chr5_4	exon	18823086	18823178	18823086	ID=Msa0841980-mRNA-1:exon:7838;Parent=Msa0841980-mRNA-1
chr5_4	exon	18823415	18823539	18823415	ID=Msa0841980-mRNA-1:exon:7837;Parent=Msa0841980-mRNA-1
chr5_4	exon	18823817	18823893	18823817	ID=Msa0841980-mRNA-1:exon:7836;Parent=Msa0841980-mRNA-1
chr5_4	exon	18824034	18824155	18824034	ID=Msa0841980-mRNA-1:exon:7835;Parent=Msa0841980-mRNA-1
chr5_4	exon	18824687	18824773	18824687	ID=Msa0841980-mRNA-1:exon:7834;Parent=Msa0841980-mRNA-1
chr5_4	exon	18825067	18825117	18825067	ID=Msa0841980-mRNA-1:exon:7833;Parent=Msa0841980-mRNA-1
chr5_4	exon	18825240	18825524	18825240	ID=Msa0841980-mRNA-1:exon:7832;Parent=Msa0841980-mRNA-1
chr5_4	exon	18825548	18825871	18825548	ID=Msa0841980-mRNA-1:exon:7831;Parent=Msa0841980-mRNA-1
chr5_4	five_prime_UTR	18825548	18825871	18825548	ID=Msa0841980-mRNA-1:five_prime_utr;Parent=Msa0841980-mRNA-1
chr5_4	five_prime_UTR	18825330	18825524	18825330	ID=Msa0841980-mRNA-1:five_prime_utr;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18825240	18825329	18825240	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18825067	18825117	18825067	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18824687	18824773	18824687	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18824034	18824155	18824034	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18823817	18823893	18823817	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18823415	18823539	18823415	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18823086	18823178	18823086	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18822880	18822972	18822880	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18822548	18822745	18822548	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18822276	18822380	18822276	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18821919	18821984	18821919	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18821731	18821808	18821731	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18821355	18821466	18821355	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18821156	18821266	18821156	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	CDS	18820881	18821029	18820881	ID=Msa0841980-mRNA-1:cds;Parent=Msa0841980-mRNA-1
chr5_4	three_prime_UTR	18820859	18820880	18820859	ID=Msa0841980-mRNA-1:three_prime_utr;Parent=Msa0841980-mRNA-1
chr5_4	three_prime_UTR	18820131	18820577	18820131	ID=Msa0841980-mRNA-1:three_prime_utr;Parent=Msa0841980-mRNA-1

Gene Sequence

>Msa0841980

ATGGCAATGGCAATGGCTCTTCGTAGGCTTTCTTCTTCAATTAACAAATCTTCACGTCCTCTCTTCAGTGCTTCTTCTGTTTACTACAAGTCATCTTTGCCTGATGAAGCTGTGTATGATAAGGAGAATTCACGTGTTTCGTGGCCAAAGCAATTGAATTCTCCACTTGAGGAAATTGATCCTGAAATTGCTGATATTATTGAGCTTGAGAAAGCTAGACAATGGAAGGGGCTGGAACTGATTCCATCAGAAAACTTCACTTCTCTATCTGTTATGCAAGCTGTTGGATCTATCATGACAAACAAATACAGTGAAGGTTATCCTGGAGCAAGATATTACGGAGGAAATGAATATATTGACATGGCAGAAACACTATGCCAAAAGCGTGCCTTGGAAGCATTTCGGTTGGATCCAGCTAAATGGGGAGTGAACGTGCAGCCTTTGTCTGGTTCACCGTCAAATTTTCATGTTTACACTGCATTGCTGAAACCTCATGATAGAATCATGGCACTTGATCTCCCTCATGGAGGACATCTTTCTCATGGTTACCAGACCGACACCAAAAAGATATCTGCAGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGATTATGACCAGCTAGAGAAATCTGCTACCCTCTTCAGGCCAAAACTAATTGTTGCTGGTGCTAGTGCCTATGCACGTCTGTATGATTATGCACGCATTCGCAAGGTGTGCGATAAACAAAAAGCTGTGATGTTAGCAGATATGGCACATATCAGTGGACTGGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATGTAGTGACTACCACAACTCACAAGTCACTTCGTGGACCACGTGGAGCTATGATCTTTTTCAGGAAGGGATTAAAAGAAGTCAACAAACAAGGAAAAGAGGTGTTCTATGACTATGAGGACAAAATCAATCAAGCTGTCTTCCCTGGACTGCAAGGTGGTCCTCACAACCATACCATTACTGGTTTAGCTGTTGCGTTGAAGCAGGCTACAACTCCAGAGTATAAAGCATACCAAGAGCAGGTTCTCAGCAATTGCGCAAAATTTGCACAGGCTCTGAGTGAGAAAGGTTATGAGCTTGTTTCTGGTGGGACTGAGAATCATCTAGTTTTGGTGAATCTCAAGAATAAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTACATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCTATGGTTCCTGGTGGTATCAGGATGGGAACTCCTGCTCTTACTTCAAGGGGATTCGTCGAGGAGGATTTCGTTAAGGTAGCAGAGTATTTCGATGCATCTGTGAATTTGGCTTTGAAGATCAAGGCAGAGAGCAAAGGAACAAAATTAAAGGACTTTGTAGAAACATTGCAATCATCCTCCTACGTGCAGTCAGAGATTTCCAAGCTTCGTCATGATGTTGAGGAGTTCGCAAAACAATTCCCAACCATTGGTTTTGAAAAATCAAGCATGAAGTACAACAAATAA

Protein sequence

>Msa0841980

MAMAMALRRLSSSINKSSRPLFSASSVYYKSSLPDEAVYDKENSRVSWPKQLNSPLEEIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSIMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCAKFAQALSEKGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVNLALKIKAESKGTKLKDFVETLQSSSYVQSEISKLRHDVEEFAKQFPTIGFEKSSMKYNK*