AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1319720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319720 MtrunA17_Chr8g0350751 97.179 319 9 0 1 319 1 319 0.0 642
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319720 AT3G61080.1 75.926 324 73 3 1 319 3 326 0.0 519
Msa1319720 AT3G61080.2 70.286 350 73 4 1 319 3 352 0.0 506

Find 91 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGAATTCATAGAATT+TGG 0.175018 8_4:+23489845 Msa1319720:CDS
GCTACTAATGATTGTTTCTT+TGG 0.191437 8_4:+23492442 Msa1319720:three_prime_UTR
TGGTGGTTCTTTCATCATTA+TGG 0.241705 8_4:+23489829 Msa1319720:CDS
CTTGCTTCCCAGTCTGTTCT+AGG 0.246454 8_4:+23489942 Msa1319720:intron
GAGGCTGAGGCTCTTGGTTT+AGG 0.277610 8_4:+23489447 Msa1319720:CDS
ATATAGTGACAGGACCATTT+TGG 0.278148 8_4:+23490248 Msa1319720:CDS
TTAAATCATTACAATCTCTT+TGG 0.303968 8_4:+23492172 Msa1319720:CDS
TGATGATCAAAGAATACTTT+AGG 0.310238 8_4:+23492399 Msa1319720:three_prime_UTR
TTCTCAAAGCCTGGCTGTTT+AGG 0.322766 8_4:-23492118 None:intergenic
ACTTGGTTGTGATTTGGTTT+TGG 0.331326 8_4:-23488410 None:intergenic
GCCTCAGCCTCGAACATTGA+TGG 0.375343 8_4:-23489435 None:intergenic
AAATGGAGAGCCTGTCATAT+TGG 0.376176 8_4:+23491408 Msa1319720:CDS
TTACTTACTTGGTTGTGATT+TGG 0.377372 8_4:-23488416 None:intergenic
GGAAAATCTAGTAAAGGCTT+TGG 0.384648 8_4:+23489993 Msa1319720:CDS
AAATGGTCCTGTCACTATAT+TGG 0.394002 8_4:-23490245 None:intergenic
TTCGGTATGTCTTGGTGTGC+TGG 0.395863 8_4:+23491817 Msa1319720:CDS
ATGTCTTGGTGTGCTGGCTT+TGG 0.400111 8_4:+23491823 Msa1319720:CDS
CATTACAATCTCTTTGGCTC+TGG 0.413408 8_4:+23492178 Msa1319720:CDS
TCTTGGTGTGCTGGCTTTGG+AGG 0.425900 8_4:+23491826 Msa1319720:CDS
ATCTTCAGTACTCTATGAAA+TGG 0.427324 8_4:+23492328 Msa1319720:three_prime_UTR
TTGATACAACCACCACCAAC+TGG 0.433145 8_4:-23489234 None:intergenic
ATTAGTGTGCAGCATGAGTA+AGG 0.434515 8_4:+23489152 Msa1319720:intron
ACCACCAACTGGACTAACTT+TGG 0.437254 8_4:-23489223 None:intergenic
GCTTGCGCAAATGCACAAAT+CGG 0.438481 8_4:+23489971 Msa1319720:CDS
TCTAGCTTATTTAAAAGCTT+AGG 0.444051 8_4:+23492237 Msa1319720:CDS
GGTCAAATGCCAGCTGCAAC+TGG 0.448517 8_4:-23490224 None:intergenic
ATGTTCGAGGCTGAGGCTCT+TGG 0.452747 8_4:+23489441 Msa1319720:CDS
CATTCTTTGTCAAAACAAAC+AGG 0.455546 8_4:+23489289 Msa1319720:CDS
GGACACAATGAGGCAGAATT+CGG 0.455833 8_4:+23491799 Msa1319720:CDS
TCCATCAATGTTCGAGGCTG+AGG 0.456820 8_4:+23489434 Msa1319720:CDS
AACAGCCAGGCTTTGAGAAA+AGG 0.459902 8_4:+23492122 Msa1319720:CDS
AATAGTGATACAGCAGGTAT+AGG 0.467243 8_4:-23492150 None:intergenic
GAGAGAATCCACTCACGAAC+CGG 0.479292 8_4:-23489177 None:intergenic
CTTGCGCAAATGCACAAATC+GGG 0.482331 8_4:+23489972 Msa1319720:CDS
GCTTGCTACATGGAGATCTC+TGG 0.484204 8_4:+23491362 Msa1319720:CDS
AAACTCTATATCAGGAGTAT+TGG 0.488540 8_4:+23489411 Msa1319720:intron
CTGAATCCAGTCTGAAGACC+AGG 0.506368 8_4:-23490175 None:intergenic
TAAATACCTGGTCTTCAGAC+TGG 0.506390 8_4:+23490169 Msa1319720:CDS
CTTAGGCACACGGATGGTCC+TGG 0.510384 8_4:-23489484 None:intergenic
ATGGAATTCATAGAATTTGG+CGG 0.510748 8_4:+23489848 Msa1319720:CDS
ATTTGGCGGATCTAGAGATC+AGG 0.518102 8_4:+23489862 Msa1319720:CDS
TTGTTCTACAGGGCAGAGAC+TGG 0.520409 8_4:+23491294 Msa1319720:intron
TAGGTTGGATCACTACCGTC+TGG 0.532323 8_4:+23489809 Msa1319720:intron
GTGCAGCATGAGTAAGGATC+CGG 0.532558 8_4:+23489158 Msa1319720:CDS
AGAAGAGAAACATGTTGAAG+TGG 0.536929 8_4:-23488368 None:intergenic
AAAGAATACTTTAGGTGGGT+AGG 0.538103 8_4:+23492407 Msa1319720:three_prime_UTR
ACGTTGAAAACACCATTGGC+AGG 0.540479 8_4:+23490021 Msa1319720:CDS
ATTAGGTTACCAGTTGCAGC+TGG 0.542187 8_4:+23490215 Msa1319720:CDS
CCGTGTGCCTAAGCCGTACA+AGG 0.543019 8_4:+23489494 Msa1319720:CDS
TTGACAAGCTTAATCAAATG+AGG 0.546055 8_4:+23492273 Msa1319720:three_prime_UTR
AAAGTTAGTCCAGTTGGTGG+TGG 0.546218 8_4:+23489225 Msa1319720:CDS
AGGCACCCATAGTGTGTGAT+TGG 0.546972 8_4:+23488262 None:intergenic
CAGGTAATGCCTAAACAGCC+AGG 0.547187 8_4:+23492109 Msa1319720:intron
CGTGAGTGGATTCTCTCTGA+AGG 0.549072 8_4:+23489183 Msa1319720:CDS
ATAACCAAAGTTAGTCCAGT+TGG 0.549921 8_4:+23489219 Msa1319720:CDS
AATCGCTACGACACTGATGC+TGG 0.550786 8_4:+23489264 Msa1319720:CDS
AAATCGGGAAAATCTAGTAA+AGG 0.552473 8_4:+23489987 Msa1319720:CDS
CTTCCCAGTCTGTTCTAGGA+AGG 0.552709 8_4:+23489946 Msa1319720:intron
ATAGAACCATGCTTGCTACA+TGG 0.553025 8_4:+23491352 Msa1319720:CDS
AGGCAGAATTCGGTATGTCT+TGG 0.554643 8_4:+23491809 Msa1319720:CDS
CACCCATAGTGTGTGATTGG+TGG 0.555270 8_4:+23488265 None:intergenic
CCTTGTACGGCTTAGGCACA+CGG 0.555435 8_4:-23489494 None:intergenic
ACATGTTGAAGTGGACATCA+TGG 0.555741 8_4:-23488359 None:intergenic
TTTCTCACCTTGTACGGCTT+AGG 0.556722 8_4:-23489501 None:intergenic
TTCGACGTTGAAAACACCAT+TGG 0.558330 8_4:+23490017 Msa1319720:CDS
CATGCTGGATCCAATATGAC+AGG 0.564399 8_4:-23491418 None:intergenic
TTCTACAGGGCAGAGACTGG+TGG 0.568183 8_4:+23491297 Msa1319720:intron
TGATCAAAGAATACTTTAGG+TGG 0.568620 8_4:+23492402 Msa1319720:three_prime_UTR
CTTGACTTACAATAACATGC+TGG 0.571217 8_4:-23491433 None:intergenic
TACAATAACATACCTGCCAA+TGG 0.575680 8_4:-23490033 None:intergenic
AGATCTCCATGTAGCAAGCA+TGG 0.585342 8_4:-23491358 None:intergenic
ACCAAAGTTAGTCCAGTTGG+TGG 0.585827 8_4:+23489222 Msa1319720:CDS
TATTGGTCCATCAATGTTCG+AGG 0.590292 8_4:+23489428 Msa1319720:CDS
CATTTGACCAATATAGTGAC+AGG 0.593763 8_4:+23490238 Msa1319720:CDS
GATTTAAATAGTGATACAGC+AGG 0.595693 8_4:-23492156 None:intergenic
GTAAGGATCCGGTTCGTGAG+TGG 0.599596 8_4:+23489169 Msa1319720:CDS
ACAAATGTATGTATGTGCAT+TGG 0.600281 8_4:-23492363 None:intergenic
GATCAAAGAATACTTTAGGT+GGG 0.611861 8_4:+23492403 Msa1319720:three_prime_UTR
GTGTGATTGGTGGAAAGTAT+TGG 0.617261 8_4:+23488275 None:intergenic
GTGAGTGGATTCTCTCTGAA+GGG 0.617511 8_4:+23489184 Msa1319720:CDS
TTCTATAGATGGACACAATG+AGG 0.626106 8_4:+23491789 Msa1319720:intron
GTACGGCTTAGGCACACGGA+TGG 0.632306 8_4:-23489490 None:intergenic
GAAGACCAGGTATTTATCTG+TGG 0.641183 8_4:-23490162 None:intergenic
CTACATGGAGATCTCTGGAG+TGG 0.660267 8_4:+23491367 Msa1319720:CDS
GTTGGATCACTACCGTCTGG+TGG 0.661067 8_4:+23489812 Msa1319720:CDS
GCACACCACAGATAAATACC+TGG 0.681671 8_4:+23490157 Msa1319720:intron
TAGGAGCTATGTATGAAACC+AGG 0.686441 8_4:+23489466 Msa1319720:CDS
ATCTCTACATCGTCAAACAG+CGG 0.689839 8_4:-23491331 None:intergenic
AAGAAGAAGAGTTGAACACG+TGG 0.690226 8_4:+23488333 Msa1319720:five_prime_UTR
ATGATGAAAGAACCACCAGA+CGG 0.702040 8_4:-23489824 None:intergenic
AGAAGAAGAGTTGAACACGT+GGG 0.738987 8_4:+23488334 Msa1319720:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGTTACTAAAAGAT+TGG - chr8_4:23488481-23488500 None:intergenic 15.0%
!!! ATTCTAAAAAAATTGAAGAA+TGG - chr8_4:23488757-23488776 None:intergenic 15.0%
!! AACAATCATACAATTATATT+AGG + chr8_4:23491736-23491755 Msa1319720:intron 15.0%
!! ACAATTATATTAGGAAAAAT+TGG + chr8_4:23491745-23491764 Msa1319720:intron 15.0%
!!! AGTTATTATTGTTACTTACT+TGG - chr8_4:23488430-23488449 None:intergenic 20.0%
!! AATTCTTGTTCTTAATGTAA+AGG + chr8_4:23488578-23488597 Msa1319720:intron 20.0%
!!! TTTTACAGTTTGTGTATAAT+TGG + chr8_4:23488781-23488800 Msa1319720:intron 20.0%
!!! CATTCTATATCCTTTTTATT+AGG - chr8_4:23488858-23488877 None:intergenic 20.0%
!!! TAAATTACTAGTTTTAGCAT+TGG + chr8_4:23488995-23489014 Msa1319720:intron 20.0%
!! ATTATGGAATTCATAGAATT+TGG + chr8_4:23489845-23489864 Msa1319720:CDS 20.0%
!! GTATGTTATTGTAATTGTTA+CGG + chr8_4:23490043-23490062 Msa1319720:intron 20.0%
!! CAAGAATATATGTAAAAACA+AGG - chr8_4:23490717-23490736 None:intergenic 20.0%
!!! CTTGTTTTTACATATATTCT+TGG + chr8_4:23490715-23490734 Msa1319720:intron 20.0%
!!! ATTCTATAACTCTTATTTTG+AGG + chr8_4:23491852-23491871 Msa1319720:CDS 20.0%
!! GAAACAAAATAATTAGTATC+AGG + chr8_4:23491886-23491905 Msa1319720:intron 20.0%
!!! TAATTTTAAATAATCTCTCC+AGG + chr8_4:23492090-23492109 Msa1319720:intron 20.0%
!! TTAAATCATTACAATCTCTT+TGG + chr8_4:23492172-23492191 Msa1319720:CDS 20.0%
! TGTTCTTAATGTAAAGGATA+TGG + chr8_4:23488584-23488603 Msa1319720:intron 25.0%
! GTGTAATTGTCCTAATAAAA+AGG + chr8_4:23488845-23488864 Msa1319720:intron 25.0%
!! TGTCATATACCATCATATTT+TGG + chr8_4:23489647-23489666 Msa1319720:intron 25.0%
!!! GAAGTCTTTTGTAATTTGTA+TGG + chr8_4:23490098-23490117 Msa1319720:intron 25.0%
!! AAAGTTACCTTTTTCCAAAA+TGG - chr8_4:23490265-23490284 None:intergenic 25.0%
! AAATGTCATACACTAAAATC+AGG - chr8_4:23490347-23490366 None:intergenic 25.0%
! TTATATTGAATAAACTGAGC+AGG + chr8_4:23490365-23490384 Msa1319720:intron 25.0%
!! TTTTATTACTACAAGGAATC+CGG - chr8_4:23490452-23490471 None:intergenic 25.0%
! AGATTACACATTCACTAAAT+CGG + chr8_4:23490528-23490547 Msa1319720:intron 25.0%
!!! TTCACTAAATCGGTTTTAAA+CGG + chr8_4:23490538-23490557 Msa1319720:intron 25.0%
! GAGATTAAGATTCTAAATGA+AGG - chr8_4:23490793-23490812 None:intergenic 25.0%
!!! AAACTACCAATACCTTTTTT+CGG + chr8_4:23490907-23490926 Msa1319720:intron 25.0%
! GTCTGCAATATATATAATCA+AGG - chr8_4:23491071-23491090 None:intergenic 25.0%
!! GATATTTTCTCATTGCAATT+TGG + chr8_4:23491166-23491185 Msa1319720:intron 25.0%
!! TATAAATCGTAGAGTCTTAT+TGG - chr8_4:23491264-23491283 None:intergenic 25.0%
! ATTGCAAAAAACGAATCAAA+CGG - chr8_4:23491565-23491584 None:intergenic 25.0%
!! TCTAGCTTATTTAAAAGCTT+AGG + chr8_4:23492237-23492256 Msa1319720:CDS 25.0%
! TGATGATCAAAGAATACTTT+AGG + chr8_4:23492399-23492418 Msa1319720:three_prime_UTR 25.0%
TTACTTACTTGGTTGTGATT+TGG - chr8_4:23488419-23488438 None:intergenic 30.0%
CTTAATGTAAAGGATATGGA+AGG + chr8_4:23488588-23488607 Msa1319720:intron 30.0%
! CTTCATATTGAAAGTGTATC+TGG + chr8_4:23488617-23488636 Msa1319720:intron 30.0%
TTGAATGTAACCACATATGT+TGG - chr8_4:23488669-23488688 None:intergenic 30.0%
CTTCTGATTGAAAATGTATC+TGG + chr8_4:23488897-23488916 Msa1319720:intron 30.0%
AACAAGTATCAGACATATGT+AGG - chr8_4:23488926-23488945 None:intergenic 30.0%
! TGTCTGTGTTAGTGTTTTAT+TGG + chr8_4:23489042-23489061 Msa1319720:intron 30.0%
TTCCTCAAAGCTTATCTTAT+TGG - chr8_4:23489097-23489116 None:intergenic 30.0%
CATTCTTTGTCAAAACAAAC+AGG + chr8_4:23489289-23489308 Msa1319720:CDS 30.0%
!!! TTCTGCTGTTTTTCTTTTGA+TGG + chr8_4:23489335-23489354 Msa1319720:intron 30.0%
! TGTTGGTTATTTGGATTTGT+TGG + chr8_4:23489369-23489388 Msa1319720:intron 30.0%
GAAAGTTGAAACTCTATATC+AGG + chr8_4:23489403-23489422 Msa1319720:intron 30.0%
! AAACTCTATATCAGGAGTAT+TGG + chr8_4:23489411-23489430 Msa1319720:intron 30.0%
! TAATGTTTTCTCACCTTGTA+CGG - chr8_4:23489510-23489529 None:intergenic 30.0%
!!! TGTTTTTGCTAGTTTGTTAG+AGG + chr8_4:23489756-23489775 Msa1319720:intron 30.0%
!!! GTTTTTGCTAGTTTGTTAGA+GGG + chr8_4:23489757-23489776 Msa1319720:intron 30.0%
AATTGAGGTAACTAATTGCT+AGG + chr8_4:23489781-23489800 Msa1319720:intron 30.0%
AACTAATTGCTAGGATTTGT+AGG + chr8_4:23489790-23489809 Msa1319720:intron 30.0%
ATGGAATTCATAGAATTTGG+CGG + chr8_4:23489848-23489867 Msa1319720:CDS 30.0%
AAATCGGGAAAATCTAGTAA+AGG + chr8_4:23489987-23490006 Msa1319720:CDS 30.0%
! ATTTATCATGTCCTTTTTCC+AGG + chr8_4:23490071-23490090 Msa1319720:intron 30.0%
ATACACTAAAATCAGGTGTA+TGG - chr8_4:23490340-23490359 None:intergenic 30.0%
TTTGTGCACTCAATTTCAAT+TGG - chr8_4:23490391-23490410 None:intergenic 30.0%
ATTACGTCAAGTTTACAATC+CGG + chr8_4:23490430-23490449 Msa1319720:intron 30.0%
! TGTGAGCTTTTATTACTACA+AGG - chr8_4:23490459-23490478 None:intergenic 30.0%
!! TCAATGGTAAAGAGTGTTTA+CGG - chr8_4:23490490-23490509 None:intergenic 30.0%
ACTGTACGATCTTAAATCAA+TGG - chr8_4:23490506-23490525 None:intergenic 30.0%
AAACGGCCATTAATTTAGAT+CGG + chr8_4:23490555-23490574 Msa1319720:intron 30.0%
! AAGATTTTAAATAGCAGTCG+CGG + chr8_4:23490830-23490849 Msa1319720:intron 30.0%
CGTTAAAGAATTTGCGATTT+CGG + chr8_4:23490856-23490875 Msa1319720:intron 30.0%
! AACATAAGCTCTGACAAAAA+TGG + chr8_4:23491391-23491410 Msa1319720:CDS 30.0%
!!! TGTATGAAGCTGTTGTTTTT+CGG + chr8_4:23491460-23491479 Msa1319720:intron 30.0%
! ATACTGTCTTGTTCTATAGA+TGG + chr8_4:23491778-23491797 Msa1319720:intron 30.0%
CAACATTGTGACTATATGTT+TGG + chr8_4:23491967-23491986 Msa1319720:intron 30.0%
GATTTAAATAGTGATACAGC+AGG - chr8_4:23492159-23492178 None:intergenic 30.0%
TTGACAAGCTTAATCAAATG+AGG + chr8_4:23492273-23492292 Msa1319720:three_prime_UTR 30.0%
ATCTTCAGTACTCTATGAAA+TGG + chr8_4:23492328-23492347 Msa1319720:three_prime_UTR 30.0%
ACAAATGTATGTATGTGCAT+TGG - chr8_4:23492366-23492385 None:intergenic 30.0%
TGATCAAAGAATACTTTAGG+TGG + chr8_4:23492402-23492421 Msa1319720:three_prime_UTR 30.0%
GATCAAAGAATACTTTAGGT+GGG + chr8_4:23492403-23492422 Msa1319720:three_prime_UTR 30.0%
! GCTACTAATGATTGTTTCTT+TGG + chr8_4:23492442-23492461 Msa1319720:three_prime_UTR 30.0%
! CTTCTTCTTTTGCCTTTCTT+TGG - chr8_4:23488322-23488341 None:intergenic 35.0%
AGAAGAGAAACATGTTGAAG+TGG - chr8_4:23488371-23488390 None:intergenic 35.0%
!!! GATTTGGTTTTGGTGAAAGA+AGG - chr8_4:23488403-23488422 None:intergenic 35.0%
!!! ACTTGGTTGTGATTTGGTTT+TGG - chr8_4:23488413-23488432 None:intergenic 35.0%
! TGGTGATGTCTAAAAGAACA+TGG - chr8_4:23488461-23488480 None:intergenic 35.0%
TTGTCCAATACCAACATATG+TGG + chr8_4:23488656-23488675 Msa1319720:intron 35.0%
GTAACCACATATGTTGGTAT+TGG - chr8_4:23488663-23488682 None:intergenic 35.0%
CGATACTGACAGATAAACAT+CGG - chr8_4:23488717-23488736 None:intergenic 35.0%
TTGAATGTAGCCAGATAAGT+CGG - chr8_4:23488960-23488979 None:intergenic 35.0%
!!! TTTTAGCATTGGTGTACATG+TGG + chr8_4:23489006-23489025 Msa1319720:intron 35.0%
TGCCAATAAGATAAGCTTTG+AGG + chr8_4:23489092-23489111 Msa1319720:intron 35.0%
ATAACCAAAGTTAGTCCAGT+TGG + chr8_4:23489219-23489238 Msa1319720:CDS 35.0%
! TGAGCTATCTGTTGGTTATT+TGG + chr8_4:23489360-23489379 Msa1319720:intron 35.0%
TTGAATGTGACAACATGTCT+CGG + chr8_4:23489624-23489643 Msa1319720:intron 35.0%
!! TACCATCATATTTTGGACAC+TGG + chr8_4:23489654-23489673 Msa1319720:intron 35.0%
!! ACCATCATATTTTGGACACT+GGG + chr8_4:23489655-23489674 Msa1319720:intron 35.0%
!! AGTTTGTTAGAGGGAAATTG+AGG + chr8_4:23489766-23489785 Msa1319720:intron 35.0%
AATTGCTAGGATTTGTAGGT+TGG + chr8_4:23489794-23489813 Msa1319720:intron 35.0%
TGGTGGTTCTTTCATCATTA+TGG + chr8_4:23489829-23489848 Msa1319720:CDS 35.0%
AAGCACAAGTACTCGTAATT+CGG - chr8_4:23489908-23489927 None:intergenic 35.0%
GGAAAATCTAGTAAAGGCTT+TGG + chr8_4:23489993-23490012 Msa1319720:CDS 35.0%
TACAATAACATACCTGCCAA+TGG - chr8_4:23490036-23490055 None:intergenic 35.0%
TTACAAAAGACTTCCTTACC+TGG - chr8_4:23490092-23490111 None:intergenic 35.0%
! TCAGACTGGATTCAGTTTTA+CGG + chr8_4:23490183-23490202 Msa1319720:CDS 35.0%
CATTTGACCAATATAGTGAC+AGG + chr8_4:23490238-23490257 Msa1319720:CDS 35.0%
AAATGGTCCTGTCACTATAT+TGG - chr8_4:23490248-23490267 None:intergenic 35.0%
! ATATAGTGACAGGACCATTT+TGG + chr8_4:23490248-23490267 Msa1319720:CDS 35.0%
TGGTAGTACTGTCACTATAT+TGG - chr8_4:23490291-23490310 None:intergenic 35.0%
AACCCTCCGATCTAAATTAA+TGG - chr8_4:23490564-23490583 None:intergenic 35.0%
TATGCAGTAAACTTGGGAAA+TGG - chr8_4:23490625-23490644 None:intergenic 35.0%
ATTTCCCAAGTTTACTGCAT+AGG + chr8_4:23490624-23490643 Msa1319720:intron 35.0%
TTTCCCAAGTTTACTGCATA+GGG + chr8_4:23490625-23490644 Msa1319720:intron 35.0%
TTTCCCTATGCAGTAAACTT+GGG - chr8_4:23490631-23490650 None:intergenic 35.0%
! AGGAGGCTATTATTTTCTTG+AGG + chr8_4:23490652-23490671 Msa1319720:intron 35.0%
!! AGACACTTGTTCTAGGATTA+AGG - chr8_4:23490743-23490762 None:intergenic 35.0%
! AAACAGCCGAAAAAAGGTAT+TGG - chr8_4:23490916-23490935 None:intergenic 35.0%
!! AAATCGTAGAGTCTTATTGG+AGG - chr8_4:23491261-23491280 None:intergenic 35.0%
!! ATCTGATTGACTTGTTCTAC+AGG + chr8_4:23491283-23491302 Msa1319720:intron 35.0%
!! TCTGATTGACTTGTTCTACA+GGG + chr8_4:23491284-23491303 Msa1319720:intron 35.0%
CTTGACTTACAATAACATGC+TGG - chr8_4:23491436-23491455 None:intergenic 35.0%
!!! GTATGAAGCTGTTGTTTTTC+GGG + chr8_4:23491461-23491480 Msa1319720:intron 35.0%
!!! TCAAACGGTCTCTTTTTTGT+TGG - chr8_4:23491550-23491569 None:intergenic 35.0%
TCAATTACAACCAAAGCTAG+AGG - chr8_4:23491692-23491711 None:intergenic 35.0%
TTCTATAGATGGACACAATG+AGG + chr8_4:23491789-23491808 Msa1319720:intron 35.0%
AATAGTGATACAGCAGGTAT+AGG - chr8_4:23492153-23492172 None:intergenic 35.0%
AAAGAATACTTTAGGTGGGT+AGG + chr8_4:23492407-23492426 Msa1319720:three_prime_UTR 35.0%
!!! TTTTGCCTTTCTTTGGCTTG+GGG - chr8_4:23488315-23488334 None:intergenic 40.0%
!! CTTTTGCCTTTCTTTGGCTT+GGG - chr8_4:23488316-23488335 None:intergenic 40.0%
! TCTTTTGCCTTTCTTTGGCT+TGG - chr8_4:23488317-23488336 None:intergenic 40.0%
AAGAAGAAGAGTTGAACACG+TGG + chr8_4:23488333-23488352 Msa1319720:five_prime_UTR 40.0%
AGAAGAAGAGTTGAACACGT+GGG + chr8_4:23488334-23488353 Msa1319720:five_prime_UTR 40.0%
ACATGTTGAAGTGGACATCA+TGG - chr8_4:23488362-23488381 None:intergenic 40.0%
GTCTAAAAGAACATGGTACG+AGG - chr8_4:23488454-23488473 None:intergenic 40.0%
ACTAACACAGACACGAATAC+TGG - chr8_4:23489035-23489054 None:intergenic 40.0%
ATTAGTGTGCAGCATGAGTA+AGG + chr8_4:23489152-23489171 Msa1319720:intron 40.0%
TATTGGTCCATCAATGTTCG+AGG + chr8_4:23489428-23489447 Msa1319720:CDS 40.0%
TAGGAGCTATGTATGAAACC+AGG + chr8_4:23489466-23489485 Msa1319720:CDS 40.0%
ACACTATCGCTTCAGATTGA+AGG - chr8_4:23489685-23489704 None:intergenic 40.0%
TTAGCAGTAGTCAGTTGTGA+AGG + chr8_4:23489719-23489738 Msa1319720:intron 40.0%
GTAGTCAGTTGTGAAGGAAT+CGG + chr8_4:23489725-23489744 Msa1319720:intron 40.0%
TAGTCAGTTGTGAAGGAATC+GGG + chr8_4:23489726-23489745 Msa1319720:intron 40.0%
ATGATGAAAGAACCACCAGA+CGG - chr8_4:23489827-23489846 None:intergenic 40.0%
TTCGACGTTGAAAACACCAT+TGG + chr8_4:23490017-23490036 Msa1319720:CDS 40.0%
! TCATGTCCTTTTTCCAGGTA+AGG + chr8_4:23490076-23490095 Msa1319720:intron 40.0%
AGACTTCCTTACCTGGAAAA+AGG - chr8_4:23490085-23490104 None:intergenic 40.0%
GAAGACCAGGTATTTATCTG+TGG - chr8_4:23490165-23490184 None:intergenic 40.0%
! TAAATACCTGGTCTTCAGAC+TGG + chr8_4:23490169-23490188 Msa1319720:CDS 40.0%
!! GACAGGACCATTTTGGAAAA+AGG + chr8_4:23490255-23490274 Msa1319720:CDS 40.0%
TCATCAGCGAATGGAAAGAA+CGG - chr8_4:23490314-23490333 None:intergenic 40.0%
TTCTTTCCATTCGCTGATGA+TGG + chr8_4:23490314-23490333 Msa1319720:intron 40.0%
GGCCATTAATTTAGATCGGA+GGG + chr8_4:23490559-23490578 Msa1319720:intron 40.0%
TAATTTAGATCGGAGGGTTG+AGG + chr8_4:23490565-23490584 Msa1319720:intron 40.0%
GGTTGAGGTCAGTAATTGTT+TGG + chr8_4:23490580-23490599 Msa1319720:intron 40.0%
!! TTGTTTGGTTCTGTTACTGC+AGG + chr8_4:23490595-23490614 Msa1319720:intron 40.0%
!! TGTTTGGTTCTGTTACTGCA+GGG + chr8_4:23490596-23490615 Msa1319720:intron 40.0%
GTTTCCCTATGCAGTAAACT+TGG - chr8_4:23490632-23490651 None:intergenic 40.0%
AGTTTACTGCATAGGGAAAC+AGG + chr8_4:23490632-23490651 Msa1319720:intron 40.0%
GTCTCATAGACACTTGTTCT+AGG - chr8_4:23490750-23490769 None:intergenic 40.0%
ATTTGCGATTTCGGCTGTTA+CGG + chr8_4:23490865-23490884 Msa1319720:intron 40.0%
!!! TTTTTTCGGCTGTTTCATCG+CGG + chr8_4:23490921-23490940 Msa1319720:intron 40.0%
GGCGTAATTGTGTTCTATCA+CGG + chr8_4:23490942-23490961 Msa1319720:intron 40.0%
ATCTCTACATCGTCAAACAG+CGG - chr8_4:23491334-23491353 None:intergenic 40.0%
! ATAGAACCATGCTTGCTACA+TGG + chr8_4:23491352-23491371 Msa1319720:CDS 40.0%
AAATGGAGAGCCTGTCATAT+TGG + chr8_4:23491408-23491427 Msa1319720:CDS 40.0%
!! TTTTCGGGACTGGATTATCT+TGG + chr8_4:23491476-23491495 Msa1319720:intron 40.0%
TTTCGGGACTGGATTATCTT+GGG + chr8_4:23491477-23491496 Msa1319720:intron 40.0%
!!! CGGTCTCTTTTTTGTTGGTT+AGG - chr8_4:23491545-23491564 None:intergenic 40.0%
!! GTTGGTTTGGTGGATCAATT+TGG + chr8_4:23491625-23491644 Msa1319720:intron 40.0%
! CATTACAATCTCTTTGGCTC+TGG + chr8_4:23492178-23492197 Msa1319720:CDS 40.0%
!! TTGTCCAACACCGACTTATC+TGG + chr8_4:23488947-23488966 Msa1319720:intron 45.0%
! GTGAGTGGATTCTCTCTGAA+GGG + chr8_4:23489184-23489203 Msa1319720:CDS 45.0%
ACCAAAGTTAGTCCAGTTGG+TGG + chr8_4:23489222-23489241 Msa1319720:CDS 45.0%
ACCACCAACTGGACTAACTT+TGG - chr8_4:23489226-23489245 None:intergenic 45.0%
!! AAAGTTAGTCCAGTTGGTGG+TGG + chr8_4:23489225-23489244 Msa1319720:CDS 45.0%
TTGATACAACCACCACCAAC+TGG - chr8_4:23489237-23489256 None:intergenic 45.0%
! TGATGGTGTGAGCTATCTGT+TGG + chr8_4:23489352-23489371 Msa1319720:intron 45.0%
TTTCTCACCTTGTACGGCTT+AGG - chr8_4:23489504-23489523 None:intergenic 45.0%
GCCCAGTGTCCAAAATATGA+TGG - chr8_4:23489659-23489678 None:intergenic 45.0%
! ATTTGGCGGATCTAGAGATC+AGG + chr8_4:23489862-23489881 Msa1319720:CDS 45.0%
CTTCCTTCCTAGAACAGACT+GGG - chr8_4:23489952-23489971 None:intergenic 45.0%
GCTTGCGCAAATGCACAAAT+CGG + chr8_4:23489971-23489990 Msa1319720:CDS 45.0%
CTTGCGCAAATGCACAAATC+GGG + chr8_4:23489972-23489991 Msa1319720:CDS 45.0%
ACGTTGAAAACACCATTGGC+AGG + chr8_4:23490021-23490040 Msa1319720:CDS 45.0%
GCACACCACAGATAAATACC+TGG + chr8_4:23490157-23490176 Msa1319720:intron 45.0%
! TTTTACGGCGAGCACAGATT+AGG + chr8_4:23490198-23490217 Msa1319720:CDS 45.0%
ATTAGGTTACCAGTTGCAGC+TGG + chr8_4:23490215-23490234 Msa1319720:CDS 45.0%
CGGCCATTAATTTAGATCGG+AGG + chr8_4:23490558-23490577 Msa1319720:intron 45.0%
TTACTGCATAGGGAAACAGG+AGG + chr8_4:23490635-23490654 Msa1319720:intron 45.0%
ATTTCGGCTGTTACGGAGTA+TGG + chr8_4:23490872-23490891 Msa1319720:intron 45.0%
GCGATGAAACAGCCGAAAAA+AGG - chr8_4:23490922-23490941 None:intergenic 45.0%
TGAAGACGGTCGTGACAAAA+AGG - chr8_4:23491024-23491043 None:intergenic 45.0%
! TTTTGTCACGACCGTCTTCA+CGG + chr8_4:23491024-23491043 Msa1319720:intron 45.0%
!! GTAGAGTCTTATTGGAGGAG+AGG - chr8_4:23491256-23491275 None:intergenic 45.0%
AGATCTCCATGTAGCAAGCA+TGG - chr8_4:23491361-23491380 None:intergenic 45.0%
CATGCTGGATCCAATATGAC+AGG - chr8_4:23491421-23491440 None:intergenic 45.0%
!!! AAGCTGTTGTTTTTCGGGAC+TGG + chr8_4:23491466-23491485 Msa1319720:intron 45.0%
TTCGGGACTGGATTATCTTG+GGG + chr8_4:23491478-23491497 Msa1319720:intron 45.0%
TATCTTGGGGTGTAACGAGT+CGG + chr8_4:23491491-23491510 Msa1319720:intron 45.0%
AAGAGCCAAACCATGAAGAG+CGG + chr8_4:23491602-23491621 Msa1319720:intron 45.0%
! CAAGCTAGAACCTCTAGCTT+TGG + chr8_4:23491679-23491698 Msa1319720:intron 45.0%
GGACACAATGAGGCAGAATT+CGG + chr8_4:23491799-23491818 Msa1319720:CDS 45.0%
AGGCAGAATTCGGTATGTCT+TGG + chr8_4:23491809-23491828 Msa1319720:CDS 45.0%
TTCTCAAAGCCTGGCTGTTT+AGG - chr8_4:23492121-23492140 None:intergenic 45.0%
!! AACAGCCAGGCTTTGAGAAA+AGG + chr8_4:23492122-23492141 Msa1319720:CDS 45.0%
! TCTCTCCTTTTCTCAAAGCC+TGG - chr8_4:23492130-23492149 None:intergenic 45.0%
GTAGCCAGATAAGTCGGTGT+TGG - chr8_4:23488954-23488973 None:intergenic 50.0%
GTGCAGCATGAGTAAGGATC+CGG + chr8_4:23489158-23489177 Msa1319720:CDS 50.0%
GAGAGAATCCACTCACGAAC+CGG - chr8_4:23489180-23489199 None:intergenic 50.0%
! CGTGAGTGGATTCTCTCTGA+AGG + chr8_4:23489183-23489202 Msa1319720:CDS 50.0%
AATCGCTACGACACTGATGC+TGG + chr8_4:23489264-23489283 Msa1319720:CDS 50.0%
TCCATCAATGTTCGAGGCTG+AGG + chr8_4:23489434-23489453 Msa1319720:CDS 50.0%
AGACACACAGACACAGAAGC+TGG + chr8_4:23489551-23489570 Msa1319720:intron 50.0%
! TAGGTTGGATCACTACCGTC+TGG + chr8_4:23489809-23489828 Msa1319720:intron 50.0%
CTTGCTTCCCAGTCTGTTCT+AGG + chr8_4:23489942-23489961 Msa1319720:intron 50.0%
!! CTTCCCAGTCTGTTCTAGGA+AGG + chr8_4:23489946-23489965 Msa1319720:intron 50.0%
GCTTCCTTCCTAGAACAGAC+TGG - chr8_4:23489953-23489972 None:intergenic 50.0%
CTGAATCCAGTCTGAAGACC+AGG - chr8_4:23490178-23490197 None:intergenic 50.0%
TCAGCGAATGGAAAGAACGG+TGG - chr8_4:23490311-23490330 None:intergenic 50.0%
GTATGGCCATCATCAGCGAA+TGG - chr8_4:23490323-23490342 None:intergenic 50.0%
TTGTTCTACAGGGCAGAGAC+TGG + chr8_4:23491294-23491313 Msa1319720:intron 50.0%
! GCTTGCTACATGGAGATCTC+TGG + chr8_4:23491362-23491381 Msa1319720:CDS 50.0%
! CTACATGGAGATCTCTGGAG+TGG + chr8_4:23491367-23491386 Msa1319720:CDS 50.0%
!! GCTCTTCATGGTTTGGCTCT+TGG - chr8_4:23491603-23491622 None:intergenic 50.0%
AGAGCCAAACCATGAAGAGC+GGG + chr8_4:23491603-23491622 Msa1319720:intron 50.0%
! TTCGGTATGTCTTGGTGTGC+TGG + chr8_4:23491817-23491836 Msa1319720:CDS 50.0%
!! ATGTCTTGGTGTGCTGGCTT+TGG + chr8_4:23491823-23491842 Msa1319720:CDS 50.0%
CTGGCTGTTTAGGCATTACC+TGG - chr8_4:23492111-23492130 None:intergenic 50.0%
CAGGTAATGCCTAAACAGCC+AGG + chr8_4:23492109-23492128 Msa1319720:intron 50.0%
!! TCTTTGGCTTGGGGTGTGGT+TGG - chr8_4:23488306-23488325 None:intergenic 55.0%
!! CCTTTCTTTGGCTTGGGGTG+TGG - chr8_4:23488310-23488329 None:intergenic 55.0%
CCACACCCCAAGCCAAAGAA+AGG + chr8_4:23488307-23488326 Msa1319720:intron 55.0%
! GTAAGGATCCGGTTCGTGAG+TGG + chr8_4:23489169-23489188 Msa1319720:CDS 55.0%
GCCTCAGCCTCGAACATTGA+TGG - chr8_4:23489438-23489457 None:intergenic 55.0%
ATGTTCGAGGCTGAGGCTCT+TGG + chr8_4:23489441-23489460 Msa1319720:CDS 55.0%
GAGGCTGAGGCTCTTGGTTT+AGG + chr8_4:23489447-23489466 Msa1319720:CDS 55.0%
CCTTGTACGGCTTAGGCACA+CGG - chr8_4:23489497-23489516 None:intergenic 55.0%
GTTGGATCACTACCGTCTGG+TGG + chr8_4:23489812-23489831 Msa1319720:CDS 55.0%
GGTCAAATGCCAGCTGCAAC+TGG - chr8_4:23490227-23490246 None:intergenic 55.0%
CACGACCGTCTTCACGGTAA+CGG + chr8_4:23491030-23491049 Msa1319720:intron 55.0%
ACGACCGTCTTCACGGTAAC+GGG + chr8_4:23491031-23491050 Msa1319720:intron 55.0%
ACGTCCCGTTACCGTGAAGA+CGG - chr8_4:23491038-23491057 None:intergenic 55.0%
TTCTACAGGGCAGAGACTGG+TGG + chr8_4:23491297-23491316 Msa1319720:intron 55.0%
TGGGGTGTAACGAGTCGGTT+TGG + chr8_4:23491496-23491515 Msa1319720:intron 55.0%
CCAACCCGCTCTTCATGGTT+TGG - chr8_4:23491610-23491629 None:intergenic 55.0%
CCAAACCATGAAGAGCGGGT+TGG + chr8_4:23491607-23491626 Msa1319720:intron 55.0%
CCAAACCAACCCGCTCTTCA+TGG - chr8_4:23491615-23491634 None:intergenic 55.0%
!! CCATGAAGAGCGGGTTGGTT+TGG + chr8_4:23491612-23491631 Msa1319720:intron 55.0%
!! TGAAGAGCGGGTTGGTTTGG+TGG + chr8_4:23491615-23491634 Msa1319720:intron 55.0%
!! TCTTGGTGTGCTGGCTTTGG+AGG + chr8_4:23491826-23491845 Msa1319720:CDS 55.0%
CTTAGGCACACGGATGGTCC+TGG - chr8_4:23489487-23489506 None:intergenic 60.0%
GTACGGCTTAGGCACACGGA+TGG - chr8_4:23489493-23489512 None:intergenic 60.0%
CCGTGTGCCTAAGCCGTACA+AGG + chr8_4:23489494-23489513 Msa1319720:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 23488276 23492474 23488276 ID=Msa1319720;Name=Msa1319720
chr8_4 mRNA 23488276 23492474 23488276 ID=Msa1319720-mRNA-1;Parent=Msa1319720;Name=Msa1319720-mRNA-1;_AED=0.17;_eAED=0.17;_QI=63|1|1|1|0.77|0.7|10|216|319
chr8_4 exon 23488276 23488302 23488276 ID=Msa1319720-mRNA-1:exon:8155;Parent=Msa1319720-mRNA-1
chr8_4 exon 23488325 23488430 23488325 ID=Msa1319720-mRNA-1:exon:8156;Parent=Msa1319720-mRNA-1
chr8_4 exon 23489157 23489310 23489157 ID=Msa1319720-mRNA-1:exon:8157;Parent=Msa1319720-mRNA-1
chr8_4 exon 23489425 23489515 23489425 ID=Msa1319720-mRNA-1:exon:8158;Parent=Msa1319720-mRNA-1
chr8_4 exon 23489812 23489883 23489812 ID=Msa1319720-mRNA-1:exon:8159;Parent=Msa1319720-mRNA-1
chr8_4 exon 23489954 23490042 23489954 ID=Msa1319720-mRNA-1:exon:8160;Parent=Msa1319720-mRNA-1
chr8_4 exon 23490158 23490276 23490158 ID=Msa1319720-mRNA-1:exon:8161;Parent=Msa1319720-mRNA-1
chr8_4 exon 23491305 23491445 23491305 ID=Msa1319720-mRNA-1:exon:8162;Parent=Msa1319720-mRNA-1
chr8_4 exon 23491797 23491873 23491797 ID=Msa1319720-mRNA-1:exon:8163;Parent=Msa1319720-mRNA-1
chr8_4 exon 23492112 23492474 23492112 ID=Msa1319720-mRNA-1:exon:8164;Parent=Msa1319720-mRNA-1
chr8_4 five_prime_UTR 23488276 23488302 23488276 ID=Msa1319720-mRNA-1:five_prime_utr;Parent=Msa1319720-mRNA-1
chr8_4 five_prime_UTR 23488325 23488360 23488325 ID=Msa1319720-mRNA-1:five_prime_utr;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23488361 23488430 23488361 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23489157 23489310 23489157 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23489425 23489515 23489425 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23489812 23489883 23489812 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23489954 23490042 23489954 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23490158 23490276 23490158 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23491305 23491445 23491305 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23491797 23491873 23491797 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 CDS 23492112 23492258 23492112 ID=Msa1319720-mRNA-1:cds;Parent=Msa1319720-mRNA-1
chr8_4 three_prime_UTR 23492259 23492474 23492259 ID=Msa1319720-mRNA-1:three_prime_utr;Parent=Msa1319720-mRNA-1
Gene Sequence

>Msa1319720

ATGATGTCCACTTCAACATGTTTCTCTTCTCTTCTTCTACCTTCTTTCACCAAAACCAAATCACAACCAATGTGCAGCATGAGTAAGGATCCGGTTCGTGAGTGGATTCTCTCTGAAGGGAAAGCTTCAAAGATAACCAAAGTTAGTCCAGTTGGTGGTGGTTGTATCAATTTTGCGAATCGCTACGACACTGATGCTGGTTCATTCTTTGTCAAAACAAACAGGAGTATTGGTCCATCAATGTTCGAGGCTGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCAGGACCATCCGTGTGCCTAAGCCGTACAAGGTTGGATCACTACCGTCTGGTGGTTCTTTCATCATTATGGAATTCATAGAATTTGGCGGATCTAGAGATCAGTCTGTTCTAGGAAGGAAGCTTGCGCAAATGCACAAATCGGGAAAATCTAGTAAAGGCTTTGGTTTCGACGTTGAAAACACCATTGGCAGCACACCACAGATAAATACCTGGTCTTCAGACTGGATTCAGTTTTACGGCGAGCACAGATTAGGTTACCAGTTGCAGCTGGCATTTGACCAATATAGTGACAGGACCATTTTGGAAAAAGGGCAGAGACTGGTGGAGAACATTGCGCCGCTGTTTGACGATGTAGAGATAGAACCATGCTTGCTACATGGAGATCTCTGGAGTGGTAACATAAGCTCTGACAAAAATGGAGAGCCTGTCATATTGGATCCAGCATGTTATTATGGACACAATGAGGCAGAATTCGGTATGTCTTGGTGTGCTGGCTTTGGAGGCTCATTCTATAACTCTTATTTTGAGGTAATGCCTAAACAGCCAGGCTTTGAGAAAAGGAGAGACCTATACCTGCTGTATCACTATTTAAATCATTACAATCTCTTTGGCTCTGGATACAGATCATCTGCTATGTCTATCATTGATGATTATCTAGCTTATTTAAAAGCTTAG

Protein sequence

>Msa1319720

MMSTSTCFSSLLLPSFTKTKSQPMCSMSKDPVREWILSEGKASKITKVSPVGGGCINFANRYDTDAGSFFVKTNRSIGPSMFEAEALGLGAMYETRTIRVPKPYKVGSLPSGGSFIIMEFIEFGGSRDQSVLGRKLAQMHKSGKSSKGFGFDVENTIGSTPQINTWSSDWIQFYGEHRLGYQLQLAFDQYSDRTILEKGQRLVENIAPLFDDVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLAYLKA*