Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227100 | XP_003597966.1 | 89.274 | 317 | 29 | 4 | 36 | 351 | 1 | 313 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227100 | sp|Q9T072|BH025_ARATH | 38.462 | 221 | 120 | 5 | 132 | 346 | 116 | 326 | 5.47e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227100 | G7IMA7 | 89.274 | 317 | 29 | 4 | 36 | 351 | 1 | 313 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0227100 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0227100 | 0.817390 | 3.380256e-52 | -8.615850e-47 |
| Msa0050850 | Msa0227100 | 0.812906 | 3.348418e-51 | -8.615850e-47 |
| Msa0082250 | Msa0227100 | 0.819275 | 1.264814e-52 | -8.615850e-47 |
| Msa0094060 | Msa0227100 | 0.818092 | 2.347672e-52 | -8.615850e-47 |
| Msa0112800 | Msa0227100 | 0.817082 | 3.964798e-52 | -8.615850e-47 |
| Msa0114960 | Msa0227100 | 0.814486 | 1.503792e-51 | -8.615850e-47 |
| Msa0155500 | Msa0227100 | 0.800591 | 1.341277e-48 | -8.615850e-47 |
| Msa0166580 | Msa0227100 | 0.816377 | 5.707953e-52 | -8.615850e-47 |
| Msa0207220 | Msa0227100 | 0.811816 | 5.792428e-51 | -8.615850e-47 |
| Msa0210870 | Msa0227100 | 0.829457 | 5.092053e-55 | -8.615850e-47 |
| Msa0222510 | Msa0227100 | 0.800393 | 1.472167e-48 | -8.615850e-47 |
| Msa0227100 | Msa0259750 | 0.890758 | 7.373779e-74 | -8.615850e-47 |
| Msa0227100 | Msa0265780 | 0.819794 | 9.632007e-53 | -8.615850e-47 |
| Msa0227100 | Msa0288270 | 0.811599 | 6.459080e-51 | -8.615850e-47 |
| Msa0227100 | Msa0288280 | 0.814784 | 1.291654e-51 | -8.615850e-47 |
| Msa0227100 | Msa0303780 | 0.806054 | 9.910937e-50 | -8.615850e-47 |
| Msa0227100 | Msa0305470 | 0.827687 | 1.363522e-54 | -8.615850e-47 |
| Msa0227100 | Msa0359230 | 0.801654 | 8.132962e-49 | -8.615850e-47 |
| Msa0227100 | Msa0361500 | 0.801258 | 9.799543e-49 | -8.615850e-47 |
| Msa0227100 | Msa0390840 | 0.807248 | 5.546710e-50 | -8.615850e-47 |
| Msa0227100 | Msa0576150 | 0.801595 | 8.362786e-49 | -8.615850e-47 |
| Msa0227100 | Msa0591570 | 0.823689 | 1.209810e-53 | -8.615850e-47 |
| Msa0227100 | Msa0622400 | 0.801074 | 1.069033e-48 | -8.615850e-47 |
| Msa0227100 | Msa0639880 | 0.814333 | 1.625469e-51 | -8.615850e-47 |
| Msa0227100 | Msa0657820 | 0.800101 | 1.687778e-48 | -8.615850e-47 |
| Msa0227100 | Msa0762390 | 0.805895 | 1.070405e-49 | -8.615850e-47 |
| Msa0227100 | Msa0762470 | 0.805035 | 1.620914e-49 | -8.615850e-47 |
| Msa0227100 | Msa0815340 | 0.805295 | 1.430569e-49 | -8.615850e-47 |
| Msa0227100 | Msa0933050 | 0.814103 | 1.826465e-51 | -8.615850e-47 |
| Msa0227100 | Msa1008960 | 0.809731 | 1.637014e-50 | -8.615850e-47 |
| Msa0227100 | Msa1018720 | 0.816440 | 5.523842e-52 | -8.615850e-47 |
| Msa0227100 | Msa1038420 | 0.816774 | 4.649709e-52 | -8.615850e-47 |
| Msa0227100 | Msa1096280 | 0.805656 | 1.201399e-49 | -8.615850e-47 |
| Msa0227100 | Msa1173670 | 0.837235 | 5.859716e-57 | -8.615850e-47 |
| Msa0227100 | Msa1177340 | 0.830531 | 2.787363e-55 | -8.615850e-47 |
| Msa0227100 | Msa1177360 | 0.821252 | 4.456625e-53 | -8.615850e-47 |
| Msa0227100 | Msa1192790 | 0.802910 | 4.482417e-49 | -8.615850e-47 |
| Msa0227100 | Msa1211280 | 0.807942 | 3.949879e-50 | -8.615850e-47 |
| Msa0227100 | Msa1227090 | 0.807763 | 4.311967e-50 | -8.615850e-47 |
| Msa0227100 | Msa1236740 | 0.818610 | 1.792103e-52 | -8.615850e-47 |
| Msa0227100 | Msa1251960 | 0.815901 | 7.289295e-52 | -8.615850e-47 |
| Msa0227100 | Msa1306540 | 0.801272 | 9.738348e-49 | -8.615850e-47 |
| Msa0227100 | Msa1327420 | 0.801992 | 6.931547e-49 | -8.615850e-47 |
| Msa0227100 | Msa1329820 | 0.807065 | 6.062799e-50 | -8.615850e-47 |
| Msa0227100 | Msa1344880 | 0.808888 | 2.481893e-50 | -8.615850e-47 |
| Msa0227100 | Msa1351370 | 0.801867 | 7.352912e-49 | -8.615850e-47 |
| Msa0227100 | Msa1391600 | 0.819499 | 1.124985e-52 | -8.615850e-47 |
| Msa0227100 | Msa1413880 | 0.809385 | 1.942733e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227100 | MtrunA17_Chr2g0333641 | 89.274 | 317 | 29 | 4 | 36 | 351 | 1 | 313 | 0.0 | 565 |
| Msa0227100 | MtrunA17_Chr2g0333621 | 78.730 | 315 | 56 | 6 | 36 | 344 | 1 | 310 | 4.80e-165 | 463 |
| Msa0227100 | MtrunA17_Chr4g0002801 | 43.143 | 350 | 137 | 10 | 36 | 344 | 1 | 329 | 1.98e-74 | 233 |
| Msa0227100 | MtrunA17_Chr4g0002781 | 42.458 | 358 | 147 | 10 | 36 | 344 | 1 | 348 | 2.78e-69 | 220 |
| Msa0227100 | MtrunA17_Chr8g0336681 | 47.581 | 248 | 116 | 6 | 111 | 349 | 97 | 339 | 1.73e-56 | 187 |
| Msa0227100 | MtrunA17_Chr7g0249811 | 37.278 | 338 | 172 | 6 | 36 | 344 | 1 | 327 | 4.57e-53 | 178 |
| Msa0227100 | MtrunA17_Chr5g0400621 | 43.096 | 239 | 106 | 5 | 116 | 340 | 102 | 324 | 2.04e-45 | 158 |
| Msa0227100 | MtrunA17_Chr5g0400661 | 38.111 | 307 | 141 | 11 | 76 | 344 | 38 | 333 | 2.40e-43 | 152 |
| Msa0227100 | MtrunA17_Chr6g0468491 | 41.026 | 273 | 135 | 9 | 79 | 340 | 47 | 304 | 8.38e-43 | 150 |
| Msa0227100 | MtrunA17_Chr2g0307131 | 41.475 | 217 | 118 | 5 | 132 | 340 | 131 | 346 | 1.91e-42 | 150 |
| Msa0227100 | MtrunA17_Chr4g0033291 | 37.358 | 265 | 146 | 6 | 93 | 348 | 74 | 327 | 4.88e-41 | 146 |
| Msa0227100 | MtrunA17_Chr4g0054581 | 39.357 | 249 | 126 | 5 | 116 | 340 | 122 | 369 | 5.54e-41 | 147 |
| Msa0227100 | MtrunA17_Chr4g0033391 | 40.670 | 209 | 117 | 3 | 141 | 344 | 109 | 315 | 6.08e-41 | 146 |
| Msa0227100 | MtrunA17_Chr4g0049331 | 45.402 | 174 | 93 | 1 | 175 | 346 | 135 | 308 | 9.95e-39 | 140 |
| Msa0227100 | MtrunA17_Chr2g0280161 | 46.703 | 182 | 88 | 3 | 171 | 346 | 173 | 351 | 1.23e-38 | 140 |
| Msa0227100 | MtrunA17_Chr2g0333611 | 42.000 | 200 | 102 | 3 | 157 | 349 | 27 | 219 | 7.19e-38 | 135 |
| Msa0227100 | MtrunA17_Chr2g0307141 | 45.562 | 169 | 88 | 3 | 175 | 340 | 183 | 350 | 7.32e-38 | 139 |
| Msa0227100 | MtrunA17_Chr4g0054561 | 42.708 | 192 | 100 | 4 | 158 | 344 | 138 | 324 | 5.92e-37 | 135 |
| Msa0227100 | MtrunA17_Chr2g0333541 | 35.017 | 297 | 152 | 9 | 58 | 345 | 4 | 268 | 2.57e-36 | 132 |
| Msa0227100 | MtrunA17_Chr4g0054551 | 41.489 | 188 | 108 | 2 | 158 | 344 | 138 | 324 | 5.31e-36 | 133 |
| Msa0227100 | MtrunA17_Chr4g0054621 | 39.227 | 181 | 101 | 3 | 162 | 340 | 159 | 332 | 7.82e-34 | 127 |
| Msa0227100 | MtrunA17_Chr7g0225901 | 42.442 | 172 | 93 | 4 | 158 | 325 | 71 | 240 | 1.37e-33 | 124 |
| Msa0227100 | MtrunA17_Chr4g0033281 | 36.653 | 251 | 140 | 6 | 93 | 340 | 82 | 316 | 3.75e-33 | 125 |
| Msa0227100 | MtrunA17_Chr5g0400671 | 32.319 | 263 | 153 | 7 | 101 | 344 | 66 | 322 | 8.44e-32 | 122 |
| Msa0227100 | MtrunA17_Chr4g0054571 | 30.205 | 341 | 196 | 7 | 17 | 340 | 9 | 324 | 2.11e-30 | 118 |
| Msa0227100 | MtrunA17_Chr5g0400641 | 43.038 | 158 | 84 | 3 | 178 | 331 | 1 | 156 | 1.23e-28 | 108 |
| Msa0227100 | MtrunA17_Chr7g0233441 | 38.503 | 187 | 100 | 3 | 165 | 347 | 23 | 198 | 2.93e-28 | 108 |
| Msa0227100 | MtrunA17_Chr4g0002831 | 39.759 | 166 | 84 | 4 | 186 | 347 | 53 | 206 | 3.99e-25 | 100 |
| Msa0227100 | MtrunA17_Chr4g0002851 | 38.667 | 150 | 76 | 2 | 198 | 347 | 65 | 198 | 4.59e-23 | 95.1 |
| Msa0227100 | MtrunA17_Chr6g0468461 | 36.517 | 178 | 96 | 3 | 148 | 325 | 151 | 311 | 2.60e-22 | 96.3 |
| Msa0227100 | MtrunA17_Chr8g0368371 | 38.562 | 153 | 69 | 6 | 60 | 204 | 6 | 141 | 7.02e-17 | 76.6 |
| Msa0227100 | MtrunA17_Chr8g0366751 | 25.781 | 256 | 157 | 6 | 80 | 309 | 361 | 609 | 6.09e-16 | 79.0 |
| Msa0227100 | MtrunA17_Chr5g0411341 | 25.431 | 232 | 149 | 4 | 101 | 309 | 410 | 640 | 2.59e-15 | 77.0 |
| Msa0227100 | MtrunA17_Chr8g0346161 | 29.310 | 174 | 108 | 6 | 142 | 309 | 264 | 428 | 5.79e-15 | 75.9 |
| Msa0227100 | MtrunA17_Chr1g0185621 | 23.618 | 199 | 139 | 4 | 159 | 344 | 459 | 657 | 5.72e-13 | 70.1 |
| Msa0227100 | MtrunA17_Chr7g0275821 | 34.211 | 114 | 61 | 2 | 174 | 283 | 251 | 354 | 1.54e-12 | 68.2 |
| Msa0227100 | MtrunA17_Chr7g0260841 | 23.485 | 264 | 160 | 5 | 65 | 327 | 264 | 486 | 1.15e-11 | 65.9 |
| Msa0227100 | MtrunA17_Chr8g0336671 | 47.500 | 80 | 38 | 2 | 140 | 219 | 2 | 77 | 1.16e-11 | 60.1 |
| Msa0227100 | MtrunA17_Chr8g0346151 | 25.000 | 176 | 116 | 6 | 143 | 309 | 251 | 419 | 2.76e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227100 | AT4G37850.2 | 38.462 | 221 | 120 | 5 | 132 | 346 | 116 | 326 | 5.56e-38 | 139 |
| Msa0227100 | AT4G37850.1 | 38.462 | 221 | 120 | 5 | 132 | 346 | 116 | 326 | 5.56e-38 | 139 |
| Msa0227100 | AT2G22750.2 | 36.546 | 249 | 138 | 6 | 112 | 348 | 65 | 305 | 9.79e-33 | 124 |
| Msa0227100 | AT2G22750.3 | 36.546 | 249 | 138 | 6 | 112 | 348 | 93 | 333 | 1.27e-32 | 124 |
| Msa0227100 | AT2G22750.5 | 36.546 | 249 | 138 | 6 | 112 | 348 | 89 | 329 | 1.35e-32 | 124 |
| Msa0227100 | AT2G22760.1 | 41.667 | 180 | 99 | 3 | 167 | 340 | 111 | 290 | 2.95e-32 | 122 |
| Msa0227100 | AT2G22750.1 | 36.546 | 249 | 137 | 7 | 112 | 348 | 65 | 304 | 2.33e-31 | 120 |
| Msa0227100 | AT2G22750.4 | 36.546 | 249 | 137 | 7 | 112 | 348 | 93 | 332 | 3.50e-31 | 120 |
| Msa0227100 | AT2G22760.2 | 42.073 | 164 | 90 | 2 | 167 | 325 | 111 | 274 | 4.42e-28 | 111 |
| Msa0227100 | AT2G22770.1 | 35.638 | 188 | 104 | 2 | 175 | 345 | 132 | 319 | 4.83e-25 | 103 |
| Msa0227100 | AT4G17880.1 | 27.523 | 218 | 141 | 5 | 97 | 309 | 347 | 552 | 2.35e-16 | 80.5 |
| Msa0227100 | AT4G09820.1 | 33.803 | 142 | 76 | 2 | 165 | 306 | 353 | 476 | 5.39e-16 | 79.3 |
| Msa0227100 | AT5G46760.1 | 28.400 | 250 | 150 | 10 | 75 | 309 | 320 | 555 | 1.35e-15 | 78.2 |
| Msa0227100 | AT2G46510.1 | 36.800 | 125 | 62 | 4 | 158 | 281 | 377 | 485 | 1.77e-14 | 75.1 |
| Msa0227100 | AT1G32640.1 | 27.753 | 227 | 137 | 9 | 113 | 324 | 397 | 611 | 1.37e-13 | 72.4 |
| Msa0227100 | AT1G01260.1 | 39.706 | 68 | 40 | 1 | 162 | 228 | 419 | 486 | 8.14e-11 | 63.5 |
| Msa0227100 | AT1G01260.2 | 39.706 | 68 | 40 | 1 | 162 | 228 | 419 | 486 | 8.14e-11 | 63.5 |
| Msa0227100 | AT1G01260.3 | 39.706 | 68 | 40 | 1 | 162 | 228 | 419 | 486 | 8.14e-11 | 63.5 |
Find 70 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAACCTGTTACATATTC+TGG | 0.210205 | 2_1:-77704791 | Msa0227100:CDS |
| GCTAGCAGTGTATTGGCTTT+TGG | 0.252967 | 2_1:-77703870 | Msa0227100:CDS |
| GATTCTTTGCTATTCTTGTT+TGG | 0.275304 | 2_1:+77704098 | None:intergenic |
| GTGTATCATGCAAGCTGTTT+GGG | 0.277580 | 2_1:-77702949 | Msa0227100:three_prime_UTR |
| TTACTTCTACTCTTTGTTCT+TGG | 0.277856 | 2_1:+77704599 | None:intergenic |
| ACTTCTTGTTCTGATTCTTC+TGG | 0.307827 | 2_1:+77704623 | None:intergenic |
| AGTAGTAGTAGCTGGTATTA+TGG | 0.315619 | 2_1:+77704652 | None:intergenic |
| AGTGTATCATGCAAGCTGTT+TGG | 0.321167 | 2_1:-77702950 | Msa0227100:three_prime_UTR |
| TGATGTTAAAGCAAGAATAT+TGG | 0.324656 | 2_1:-77703988 | Msa0227100:CDS |
| GCACTTTCAGCTACTATTCC+TGG | 0.324686 | 2_1:-77704443 | Msa0227100:CDS |
| TCAGTGTTTGGATCACATTA+TGG | 0.344284 | 2_1:-77704507 | Msa0227100:CDS |
| AGCTAATGGAATGGGGATAA+GGG | 0.360309 | 2_1:+77705113 | None:intergenic |
| TAGAAGTGGTTCTCAGTGTT+TGG | 0.364117 | 2_1:-77704519 | Msa0227100:CDS |
| TGTCACTGCTAGCAGTGTAT+TGG | 0.365840 | 2_1:-77703877 | Msa0227100:CDS |
| AAGCTAATGGAATGGGGATA+AGG | 0.375867 | 2_1:+77705112 | None:intergenic |
| TGAGCCATCCATCTCATTAG+AGG | 0.377502 | 2_1:+77704754 | None:intergenic |
| AAGTAATAATAAGAGGAGTT+TGG | 0.391916 | 2_1:-77704582 | Msa0227100:CDS |
| CGAAATGACGGTGATTGATT+TGG | 0.404748 | 2_1:-77703018 | Msa0227100:CDS |
| CTGCTTCCAGAATATGTAAC+AGG | 0.414669 | 2_1:+77704785 | None:intergenic |
| CTGGATGAAGCTAATGGAAT+GGG | 0.417691 | 2_1:+77705105 | None:intergenic |
| AGAGTAGAAGTAATAATAAG+AGG | 0.424376 | 2_1:-77704589 | Msa0227100:CDS |
| TGGCTTTACTATTGTCGCTC+AGG | 0.443880 | 2_1:-77703835 | Msa0227100:intron |
| GGAACATTGGCCTCTTCATT+CGG | 0.453854 | 2_1:-77705046 | Msa0227100:intron |
| AGAACATCATGGAGGAATCA+TGG | 0.464890 | 2_1:-77705068 | Msa0227100:CDS |
| TTCTACTCTTCTTTCCACTT+TGG | 0.465419 | 2_1:+77704537 | None:intergenic |
| TTTATTACCTTCTTCAAGCC+AGG | 0.465921 | 2_1:+77704425 | None:intergenic |
| AAAGATAGAATAAATGTCCT+TGG | 0.468384 | 2_1:+77704686 | None:intergenic |
| AGCAAGAATATTGGAAAATG+AGG | 0.474113 | 2_1:-77703979 | Msa0227100:CDS |
| TAATGGTGACAATAGGAATT+GGG | 0.480317 | 2_1:-77704893 | Msa0227100:intron |
| TACCACCTCAAATTCTGATC+AGG | 0.481127 | 2_1:-77704033 | Msa0227100:CDS |
| TATTCACTGGATGAAGCTAA+TGG | 0.482747 | 2_1:+77705099 | None:intergenic |
| ATGGATGGCTCAGATTGCTC+AGG | 0.485183 | 2_1:-77704743 | Msa0227100:CDS |
| TGGAGGAATCATGGGAACAT+TGG | 0.515296 | 2_1:-77705059 | Msa0227100:CDS |
| TACTATTCCTGGCTTGAAGA+AGG | 0.517604 | 2_1:-77704432 | Msa0227100:intron |
| GGAATGGGGATAAGGGAGGA+TGG | 0.529986 | 2_1:+77705120 | None:intergenic |
| ATAGGAATTGGGTGATGTTG+AGG | 0.530496 | 2_1:-77704882 | Msa0227100:intron |
| GCAATCCTGATCAGAATTTG+AGG | 0.532272 | 2_1:+77704028 | None:intergenic |
| ACTGGATGAAGCTAATGGAA+TGG | 0.547841 | 2_1:+77705104 | None:intergenic |
| TCTTTCATCCTCTAATGAGA+TGG | 0.562481 | 2_1:-77704762 | Msa0227100:CDS |
| AGTGGAAAGAAGAGTAGAAG+TGG | 0.563816 | 2_1:-77704533 | Msa0227100:CDS |
| TAATGGAATGGGGATAAGGG+AGG | 0.565036 | 2_1:+77705116 | None:intergenic |
| GTTCTGTGATGTGTATTCAC+TGG | 0.566034 | 2_1:+77705086 | None:intergenic |
| GGTGATGTTGAGGATTTGCT+AGG | 0.567202 | 2_1:-77704872 | Msa0227100:CDS |
| TAGAATAAATGTCCTTGGAG+TGG | 0.581040 | 2_1:+77704691 | None:intergenic |
| ATGGACAAGAACTATATACT+TGG | 0.584966 | 2_1:-77704176 | Msa0227100:CDS |
| GCAAAAGCAAGTAACCAAAG+TGG | 0.587147 | 2_1:-77704551 | Msa0227100:CDS |
| TGGACGGTGTTGATGAAGGA+TGG | 0.592345 | 2_1:+77704711 | None:intergenic |
| AAGTAATTAATGTTTGATCG+TGG | 0.592571 | 2_1:-77705174 | Msa0227100:exon |
| GGAGTGGACGGTGTTGATGA+AGG | 0.594219 | 2_1:+77704707 | None:intergenic |
| GAACATCATGGAGGAATCAT+GGG | 0.596545 | 2_1:-77705067 | Msa0227100:CDS |
| GGTGTCTTGCAGATGGGTGA+AGG | 0.598134 | 2_1:-77703044 | Msa0227100:intron |
| ATAAATGTCCTTGGAGTGGA+CGG | 0.600736 | 2_1:+77704695 | None:intergenic |
| GGGTGAAGGGTACGAAATGA+CGG | 0.601090 | 2_1:-77703030 | Msa0227100:CDS |
| CATTCAGATCCACTGTGAGA+AGG | 0.601974 | 2_1:-77703952 | Msa0227100:CDS |
| TCATCCTCTAATGAGATGGA+TGG | 0.603818 | 2_1:-77704758 | Msa0227100:CDS |
| CTTGCTTTAACATCAAAGAG+TGG | 0.605135 | 2_1:+77703996 | None:intergenic |
| AATATGTAACAGGTTGCTGA+AGG | 0.616197 | 2_1:+77704795 | None:intergenic |
| CATCAACACCGTCCACTCCA+AGG | 0.620000 | 2_1:-77704703 | Msa0227100:CDS |
| TGTATCATGCAAGCTGTTTG+GGG | 0.632009 | 2_1:-77702948 | Msa0227100:three_prime_UTR |
| ATACACATCACAGAACATCA+TGG | 0.634001 | 2_1:-77705079 | Msa0227100:CDS |
| GTGTCTTGCAGATGGGTGAA+GGG | 0.634582 | 2_1:-77703043 | Msa0227100:intron |
| AGAACGTGTGAAGGAGCTAG+AGG | 0.643700 | 2_1:-77704123 | Msa0227100:CDS |
| GTGATGTTGAGGATTTGCTA+GGG | 0.643753 | 2_1:-77704871 | Msa0227100:CDS |
| ACTACTTCAAGAACGTGTGA+AGG | 0.653803 | 2_1:-77704132 | Msa0227100:CDS |
| TGGATGGCTCAGATTGCTCA+GGG | 0.676528 | 2_1:-77704742 | Msa0227100:CDS |
| GCTTGCATGATACACTAGAA+CGG | 0.677038 | 2_1:+77702957 | None:intergenic |
| TGTCAATTTCCTTCTCACAG+TGG | 0.679003 | 2_1:+77703943 | None:intergenic |
| TGGATGAAGCTAATGGAATG+GGG | 0.684423 | 2_1:+77705106 | None:intergenic |
| ATCCTGATCAGAATTTGAGG+TGG | 0.691103 | 2_1:+77704031 | None:intergenic |
| CACATCACAGAACATCATGG+AGG | 0.746318 | 2_1:-77705076 | Msa0227100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATCATTTCAATTAA+TGG | - | chr2_1:77703114-77703133 | Msa0227100:intron | 10.0% |
| !!! | TATAATATCATAATGTTTTA+TGG | + | chr2_1:77704241-77704260 | None:intergenic | 10.0% |
| !!! | ATTTTTAAGTATCTTTTTAA+GGG | - | chr2_1:77705142-77705161 | Msa0227100:CDS | 10.0% |
| !! | TAAATAATCATTTCAATTAA+TGG | - | chr2_1:77703114-77703133 | Msa0227100:intron | 10.0% |
| !!! | TATAATATCATAATGTTTTA+TGG | + | chr2_1:77704241-77704260 | None:intergenic | 10.0% |
| !!! | ATTTTTAAGTATCTTTTTAA+GGG | - | chr2_1:77705142-77705161 | Msa0227100:CDS | 10.0% |
| !! | TGCATAAATTAATTAATAGA+TGG | - | chr2_1:77703829-77703848 | Msa0227100:intron | 15.0% |
| !!! | TCAAAAACAATTTTCTTTTA+TGG | - | chr2_1:77704477-77704496 | Msa0227100:CDS | 15.0% |
| !! | ATGTTTAGCTATTTAAATAT+GGG | + | chr2_1:77704561-77704580 | None:intergenic | 15.0% |
| !! | AATGTTTAGCTATTTAAATA+TGG | + | chr2_1:77704562-77704581 | None:intergenic | 15.0% |
| !! | CAATCTAATATTTAATAACA+TGG | - | chr2_1:77704959-77704978 | Msa0227100:intron | 15.0% |
| !!! | CATTTTTAAGTATCTTTTTA+AGG | - | chr2_1:77705141-77705160 | Msa0227100:CDS | 15.0% |
| !! | TGCATAAATTAATTAATAGA+TGG | - | chr2_1:77703829-77703848 | Msa0227100:intron | 15.0% |
| !!! | TCAAAAACAATTTTCTTTTA+TGG | - | chr2_1:77704477-77704496 | Msa0227100:CDS | 15.0% |
| !! | ATGTTTAGCTATTTAAATAT+GGG | + | chr2_1:77704561-77704580 | None:intergenic | 15.0% |
| !! | AATGTTTAGCTATTTAAATA+TGG | + | chr2_1:77704562-77704581 | None:intergenic | 15.0% |
| !! | CAATCTAATATTTAATAACA+TGG | - | chr2_1:77704959-77704978 | Msa0227100:intron | 15.0% |
| !!! | CATTTTTAAGTATCTTTTTA+AGG | - | chr2_1:77705141-77705160 | Msa0227100:CDS | 15.0% |
| !!! | ATTAAGAGCACTAATTAAAT+TGG | + | chr2_1:77703639-77703658 | None:intergenic | 20.0% |
| !!! | TTATTTTATACGGATTGAAT+TGG | - | chr2_1:77703790-77703809 | Msa0227100:intron | 20.0% |
| !!! | TATTTTATACGGATTGAATT+GGG | - | chr2_1:77703791-77703810 | Msa0227100:intron | 20.0% |
| !! | AGACGTTTGATAAATTTATA+AGG | + | chr2_1:77704336-77704355 | None:intergenic | 20.0% |
| !! | CTCATGAGATAATATTTAAA+AGG | - | chr2_1:77704354-77704373 | Msa0227100:intron | 20.0% |
| !!! | ATGGTAATAATTCACTTTTA+TGG | - | chr2_1:77704496-77704515 | Msa0227100:CDS | 20.0% |
| !!! | TTGGCTACTATTTTATTTAA+TGG | + | chr2_1:77704638-77704657 | None:intergenic | 20.0% |
| !! | TATTAATGAATAGTTTGACT+TGG | + | chr2_1:77704657-77704676 | None:intergenic | 20.0% |
| !!! | ATTAAGAGCACTAATTAAAT+TGG | + | chr2_1:77703639-77703658 | None:intergenic | 20.0% |
| !!! | TTATTTTATACGGATTGAAT+TGG | - | chr2_1:77703790-77703809 | Msa0227100:intron | 20.0% |
| !!! | TATTTTATACGGATTGAATT+GGG | - | chr2_1:77703791-77703810 | Msa0227100:intron | 20.0% |
| !! | AGACGTTTGATAAATTTATA+AGG | + | chr2_1:77704336-77704355 | None:intergenic | 20.0% |
| !! | CTCATGAGATAATATTTAAA+AGG | - | chr2_1:77704354-77704373 | Msa0227100:intron | 20.0% |
| !!! | ATGGTAATAATTCACTTTTA+TGG | - | chr2_1:77704496-77704515 | Msa0227100:CDS | 20.0% |
| !!! | TTGGCTACTATTTTATTTAA+TGG | + | chr2_1:77704638-77704657 | None:intergenic | 20.0% |
| !! | TATTAATGAATAGTTTGACT+TGG | + | chr2_1:77704657-77704676 | None:intergenic | 20.0% |
| ! | AAGTAATTAATGTTTGATCG+TGG | - | chr2_1:77702850-77702869 | Msa0227100:three_prime_UTR | 25.0% |
| ! | TTTATGTCAGAAAATAGTAC+TGG | + | chr2_1:77703098-77703117 | None:intergenic | 25.0% |
| ! | TTTCAATTAATGGTGACAAT+AGG | - | chr2_1:77703124-77703143 | Msa0227100:intron | 25.0% |
| ! | AAAGATAGAATAAATGTCCT+TGG | + | chr2_1:77703341-77703360 | None:intergenic | 25.0% |
| ! | AGAGTAGAAGTAATAATAAG+AGG | - | chr2_1:77703435-77703454 | Msa0227100:intron | 25.0% |
| ! | AAGTAATAATAAGAGGAGTT+TGG | - | chr2_1:77703442-77703461 | Msa0227100:intron | 25.0% |
| ! | TGATGTTAAAGCAAGAATAT+TGG | - | chr2_1:77704036-77704055 | Msa0227100:CDS | 25.0% |
| ! | ATTTAAAAGGAAATGCTAAC+CGG | - | chr2_1:77704367-77704386 | Msa0227100:intron | 25.0% |
| ! | ACTGGTTAAAGATATGAAAA+AGG | - | chr2_1:77704402-77704421 | Msa0227100:intron | 25.0% |
| !!! | TTTTATTTAATGGACCTTGA+TGG | + | chr2_1:77704628-77704647 | None:intergenic | 25.0% |
| ! | TTTCGACTGCTATATATAAA+TGG | + | chr2_1:77702832-77702851 | None:intergenic | 25.0% |
| ! | AAGTAATTAATGTTTGATCG+TGG | - | chr2_1:77702850-77702869 | Msa0227100:three_prime_UTR | 25.0% |
| ! | TTTATGTCAGAAAATAGTAC+TGG | + | chr2_1:77703098-77703117 | None:intergenic | 25.0% |
| ! | TTTCAATTAATGGTGACAAT+AGG | - | chr2_1:77703124-77703143 | Msa0227100:intron | 25.0% |
| ! | AAAGATAGAATAAATGTCCT+TGG | + | chr2_1:77703341-77703360 | None:intergenic | 25.0% |
| ! | AGAGTAGAAGTAATAATAAG+AGG | - | chr2_1:77703435-77703454 | Msa0227100:intron | 25.0% |
| ! | AAGTAATAATAAGAGGAGTT+TGG | - | chr2_1:77703442-77703461 | Msa0227100:intron | 25.0% |
| ! | TGATGTTAAAGCAAGAATAT+TGG | - | chr2_1:77704036-77704055 | Msa0227100:CDS | 25.0% |
| ! | ATTTAAAAGGAAATGCTAAC+CGG | - | chr2_1:77704367-77704386 | Msa0227100:intron | 25.0% |
| ! | ACTGGTTAAAGATATGAAAA+AGG | - | chr2_1:77704402-77704421 | Msa0227100:intron | 25.0% |
| !!! | TTTTATTTAATGGACCTTGA+TGG | + | chr2_1:77704628-77704647 | None:intergenic | 25.0% |
| !! | AGTATTTTTACCGAATGAAG+AGG | + | chr2_1:77702991-77703010 | None:intergenic | 30.0% |
| TTAATGGTGACAATAGGAAT+TGG | - | chr2_1:77703130-77703149 | Msa0227100:intron | 30.0% | |
| TAATGGTGACAATAGGAATT+GGG | - | chr2_1:77703131-77703150 | Msa0227100:intron | 30.0% | |
| TTACTTCTACTCTTTGTTCT+TGG | + | chr2_1:77703428-77703447 | None:intergenic | 30.0% | |
| AGAAGAACATATTAATCCCT+CGG | + | chr2_1:77703740-77703759 | None:intergenic | 30.0% | |
| ATGGACAAGAACTATATACT+TGG | - | chr2_1:77703848-77703867 | Msa0227100:CDS | 30.0% | |
| !! | GATTCTTTGCTATTCTTGTT+TGG | + | chr2_1:77703929-77703948 | None:intergenic | 30.0% |
| AGCAAGAATATTGGAAAATG+AGG | - | chr2_1:77704045-77704064 | Msa0227100:CDS | 30.0% | |
| !! | AGTATTTTTACCGAATGAAG+AGG | + | chr2_1:77702991-77703010 | None:intergenic | 30.0% |
| TTAATGGTGACAATAGGAAT+TGG | - | chr2_1:77703130-77703149 | Msa0227100:intron | 30.0% | |
| TAATGGTGACAATAGGAATT+GGG | - | chr2_1:77703131-77703150 | Msa0227100:intron | 30.0% | |
| TTACTTCTACTCTTTGTTCT+TGG | + | chr2_1:77703428-77703447 | None:intergenic | 30.0% | |
| AGAAGAACATATTAATCCCT+CGG | + | chr2_1:77703740-77703759 | None:intergenic | 30.0% | |
| ATGGACAAGAACTATATACT+TGG | - | chr2_1:77703848-77703867 | Msa0227100:CDS | 30.0% | |
| !! | GATTCTTTGCTATTCTTGTT+TGG | + | chr2_1:77703929-77703948 | None:intergenic | 30.0% |
| AGCAAGAATATTGGAAAATG+AGG | - | chr2_1:77704045-77704064 | Msa0227100:CDS | 30.0% | |
| TATTCACTGGATGAAGCTAA+TGG | + | chr2_1:77702928-77702947 | None:intergenic | 35.0% | |
| ATACACATCACAGAACATCA+TGG | - | chr2_1:77702945-77702964 | Msa0227100:three_prime_UTR | 35.0% | |
| AATATGTAACAGGTTGCTGA+AGG | + | chr2_1:77703232-77703251 | None:intergenic | 35.0% | |
| TCTTTCATCCTCTAATGAGA+TGG | - | chr2_1:77703262-77703281 | Msa0227100:intron | 35.0% | |
| TAGAATAAATGTCCTTGGAG+TGG | + | chr2_1:77703336-77703355 | None:intergenic | 35.0% | |
| AGTAGTAGTAGCTGGTATTA+TGG | + | chr2_1:77703375-77703394 | None:intergenic | 35.0% | |
| ACTTCTTGTTCTGATTCTTC+TGG | + | chr2_1:77703404-77703423 | None:intergenic | 35.0% | |
| !! | TGGTTACTTGCTTTTGCTTT+TGG | + | chr2_1:77703470-77703489 | None:intergenic | 35.0% |
| TTCTACTCTTCTTTCCACTT+TGG | + | chr2_1:77703490-77703509 | None:intergenic | 35.0% | |
| TCAGTGTTTGGATCACATTA+TGG | - | chr2_1:77703517-77703536 | Msa0227100:intron | 35.0% | |
| TTTATTACCTTCTTCAAGCC+AGG | + | chr2_1:77703602-77703621 | None:intergenic | 35.0% | |
| !! | GTAGAAAGATTGATTTGTCC+CGG | - | chr2_1:77703707-77703726 | Msa0227100:intron | 35.0% |
| TTAATCCCTCGGTTAAATAC+CGG | + | chr2_1:77703729-77703748 | None:intergenic | 35.0% | |
| CTTGCTTTAACATCAAAGAG+TGG | + | chr2_1:77704031-77704050 | None:intergenic | 35.0% | |
| ATATCTTTAACCAGTGTCTC+GGG | + | chr2_1:77704397-77704416 | None:intergenic | 35.0% | |
| CATATCTTTAACCAGTGTCT+CGG | + | chr2_1:77704398-77704417 | None:intergenic | 35.0% | |
| CTAAATGTTCCATTCCATCA+AGG | - | chr2_1:77704611-77704630 | Msa0227100:CDS | 35.0% | |
| ! | TTTAATGGACCTTGATGGAA+TGG | + | chr2_1:77704623-77704642 | None:intergenic | 35.0% |
| TATTCACTGGATGAAGCTAA+TGG | + | chr2_1:77702928-77702947 | None:intergenic | 35.0% | |
| ATACACATCACAGAACATCA+TGG | - | chr2_1:77702945-77702964 | Msa0227100:three_prime_UTR | 35.0% | |
| AATATGTAACAGGTTGCTGA+AGG | + | chr2_1:77703232-77703251 | None:intergenic | 35.0% | |
| TCTTTCATCCTCTAATGAGA+TGG | - | chr2_1:77703262-77703281 | Msa0227100:intron | 35.0% | |
| TAGAATAAATGTCCTTGGAG+TGG | + | chr2_1:77703336-77703355 | None:intergenic | 35.0% | |
| AGTAGTAGTAGCTGGTATTA+TGG | + | chr2_1:77703375-77703394 | None:intergenic | 35.0% | |
| ACTTCTTGTTCTGATTCTTC+TGG | + | chr2_1:77703404-77703423 | None:intergenic | 35.0% | |
| !! | TGGTTACTTGCTTTTGCTTT+TGG | + | chr2_1:77703470-77703489 | None:intergenic | 35.0% |
| TTCTACTCTTCTTTCCACTT+TGG | + | chr2_1:77703490-77703509 | None:intergenic | 35.0% | |
| TCAGTGTTTGGATCACATTA+TGG | - | chr2_1:77703517-77703536 | Msa0227100:intron | 35.0% | |
| TTTATTACCTTCTTCAAGCC+AGG | + | chr2_1:77703602-77703621 | None:intergenic | 35.0% | |
| !! | GTAGAAAGATTGATTTGTCC+CGG | - | chr2_1:77703707-77703726 | Msa0227100:intron | 35.0% |
| TTAATCCCTCGGTTAAATAC+CGG | + | chr2_1:77703729-77703748 | None:intergenic | 35.0% | |
| CTTGCTTTAACATCAAAGAG+TGG | + | chr2_1:77704031-77704050 | None:intergenic | 35.0% | |
| ATATCTTTAACCAGTGTCTC+GGG | + | chr2_1:77704397-77704416 | None:intergenic | 35.0% | |
| CATATCTTTAACCAGTGTCT+CGG | + | chr2_1:77704398-77704417 | None:intergenic | 35.0% | |
| CTAAATGTTCCATTCCATCA+AGG | - | chr2_1:77704611-77704630 | Msa0227100:CDS | 35.0% | |
| ! | TTTAATGGACCTTGATGGAA+TGG | + | chr2_1:77704623-77704642 | None:intergenic | 35.0% |
| AGCTAATGGAATGGGGATAA+GGG | + | chr2_1:77702914-77702933 | None:intergenic | 40.0% | |
| AAGCTAATGGAATGGGGATA+AGG | + | chr2_1:77702915-77702934 | None:intergenic | 40.0% | |
| TGGATGAAGCTAATGGAATG+GGG | + | chr2_1:77702921-77702940 | None:intergenic | 40.0% | |
| CTGGATGAAGCTAATGGAAT+GGG | + | chr2_1:77702922-77702941 | None:intergenic | 40.0% | |
| ACTGGATGAAGCTAATGGAA+TGG | + | chr2_1:77702923-77702942 | None:intergenic | 40.0% | |
| GTTCTGTGATGTGTATTCAC+TGG | + | chr2_1:77702941-77702960 | None:intergenic | 40.0% | |
| AGAACATCATGGAGGAATCA+TGG | - | chr2_1:77702956-77702975 | Msa0227100:exon | 40.0% | |
| GAACATCATGGAGGAATCAT+GGG | - | chr2_1:77702957-77702976 | Msa0227100:exon | 40.0% | |
| ATAGGAATTGGGTGATGTTG+AGG | - | chr2_1:77703142-77703161 | Msa0227100:intron | 40.0% | |
| !! | GTGATGTTGAGGATTTGCTA+GGG | - | chr2_1:77703153-77703172 | Msa0227100:intron | 40.0% |
| CAGCAACCTGTTACATATTC+TGG | - | chr2_1:77703233-77703252 | Msa0227100:intron | 40.0% | |
| CTGCTTCCAGAATATGTAAC+AGG | + | chr2_1:77703242-77703261 | None:intergenic | 40.0% | |
| TCATCCTCTAATGAGATGGA+TGG | - | chr2_1:77703266-77703285 | Msa0227100:intron | 40.0% | |
| ATAAATGTCCTTGGAGTGGA+CGG | + | chr2_1:77703332-77703351 | None:intergenic | 40.0% | |
| GCAAAAGCAAGTAACCAAAG+TGG | - | chr2_1:77703473-77703492 | Msa0227100:intron | 40.0% | |
| AGTGGAAAGAAGAGTAGAAG+TGG | - | chr2_1:77703491-77703510 | Msa0227100:intron | 40.0% | |
| TAGAAGTGGTTCTCAGTGTT+TGG | - | chr2_1:77703505-77703524 | Msa0227100:intron | 40.0% | |
| ! | TACTATTCCTGGCTTGAAGA+AGG | - | chr2_1:77703592-77703611 | Msa0227100:intron | 40.0% |
| TAATCCCTCGGTTAAATACC+GGG | + | chr2_1:77703728-77703747 | None:intergenic | 40.0% | |
| ACTACTTCAAGAACGTGTGA+AGG | - | chr2_1:77703892-77703911 | Msa0227100:CDS | 40.0% | |
| TACCACCTCAAATTCTGATC+AGG | - | chr2_1:77703991-77704010 | Msa0227100:CDS | 40.0% | |
| ATCCTGATCAGAATTTGAGG+TGG | + | chr2_1:77703996-77704015 | None:intergenic | 40.0% | |
| GCAATCCTGATCAGAATTTG+AGG | + | chr2_1:77703999-77704018 | None:intergenic | 40.0% | |
| TGTCAATTTCCTTCTCACAG+TGG | + | chr2_1:77704084-77704103 | None:intergenic | 40.0% | |
| !!! | GCTTTTGGAACTTCAACTCT+TGG | - | chr2_1:77704169-77704188 | Msa0227100:CDS | 40.0% |
| TATCTTTAACCAGTGTCTCG+GGG | + | chr2_1:77704396-77704415 | None:intergenic | 40.0% | |
| TATGATTAACCAGTGCCTCT+GGG | - | chr2_1:77704519-77704538 | Msa0227100:CDS | 40.0% | |
| TAAATATGGGTCCCGTTAAC+CGG | + | chr2_1:77704548-77704567 | None:intergenic | 40.0% | |
| ATAACATGGTGTCTTGCAGA+TGG | - | chr2_1:77704973-77704992 | Msa0227100:intron | 40.0% | |
| TAACATGGTGTCTTGCAGAT+GGG | - | chr2_1:77704974-77704993 | Msa0227100:intron | 40.0% | |
| CGAAATGACGGTGATTGATT+TGG | - | chr2_1:77705006-77705025 | Msa0227100:intron | 40.0% | |
| GCTTGCATGATACACTAGAA+CGG | + | chr2_1:77705070-77705089 | None:intergenic | 40.0% | |
| AGTGTATCATGCAAGCTGTT+TGG | - | chr2_1:77705074-77705093 | Msa0227100:CDS | 40.0% | |
| GTGTATCATGCAAGCTGTTT+GGG | - | chr2_1:77705075-77705094 | Msa0227100:CDS | 40.0% | |
| TGTATCATGCAAGCTGTTTG+GGG | - | chr2_1:77705076-77705095 | Msa0227100:CDS | 40.0% | |
| AGCTAATGGAATGGGGATAA+GGG | + | chr2_1:77702914-77702933 | None:intergenic | 40.0% | |
| AAGCTAATGGAATGGGGATA+AGG | + | chr2_1:77702915-77702934 | None:intergenic | 40.0% | |
| TGGATGAAGCTAATGGAATG+GGG | + | chr2_1:77702921-77702940 | None:intergenic | 40.0% | |
| CTGGATGAAGCTAATGGAAT+GGG | + | chr2_1:77702922-77702941 | None:intergenic | 40.0% | |
| ACTGGATGAAGCTAATGGAA+TGG | + | chr2_1:77702923-77702942 | None:intergenic | 40.0% | |
| GTTCTGTGATGTGTATTCAC+TGG | + | chr2_1:77702941-77702960 | None:intergenic | 40.0% | |
| AGAACATCATGGAGGAATCA+TGG | - | chr2_1:77702956-77702975 | Msa0227100:exon | 40.0% | |
| GAACATCATGGAGGAATCAT+GGG | - | chr2_1:77702957-77702976 | Msa0227100:exon | 40.0% | |
| ATAGGAATTGGGTGATGTTG+AGG | - | chr2_1:77703142-77703161 | Msa0227100:intron | 40.0% | |
| !! | GTGATGTTGAGGATTTGCTA+GGG | - | chr2_1:77703153-77703172 | Msa0227100:intron | 40.0% |
| CAGCAACCTGTTACATATTC+TGG | - | chr2_1:77703233-77703252 | Msa0227100:intron | 40.0% | |
| CTGCTTCCAGAATATGTAAC+AGG | + | chr2_1:77703242-77703261 | None:intergenic | 40.0% | |
| TCATCCTCTAATGAGATGGA+TGG | - | chr2_1:77703266-77703285 | Msa0227100:intron | 40.0% | |
| ATAAATGTCCTTGGAGTGGA+CGG | + | chr2_1:77703332-77703351 | None:intergenic | 40.0% | |
| GCAAAAGCAAGTAACCAAAG+TGG | - | chr2_1:77703473-77703492 | Msa0227100:intron | 40.0% | |
| AGTGGAAAGAAGAGTAGAAG+TGG | - | chr2_1:77703491-77703510 | Msa0227100:intron | 40.0% | |
| TAGAAGTGGTTCTCAGTGTT+TGG | - | chr2_1:77703505-77703524 | Msa0227100:intron | 40.0% | |
| ! | TACTATTCCTGGCTTGAAGA+AGG | - | chr2_1:77703592-77703611 | Msa0227100:intron | 40.0% |
| TAATCCCTCGGTTAAATACC+GGG | + | chr2_1:77703728-77703747 | None:intergenic | 40.0% | |
| ACTACTTCAAGAACGTGTGA+AGG | - | chr2_1:77703892-77703911 | Msa0227100:CDS | 40.0% | |
| TACCACCTCAAATTCTGATC+AGG | - | chr2_1:77703991-77704010 | Msa0227100:CDS | 40.0% | |
| ATCCTGATCAGAATTTGAGG+TGG | + | chr2_1:77703996-77704015 | None:intergenic | 40.0% | |
| GCAATCCTGATCAGAATTTG+AGG | + | chr2_1:77703999-77704018 | None:intergenic | 40.0% | |
| TGTCAATTTCCTTCTCACAG+TGG | + | chr2_1:77704084-77704103 | None:intergenic | 40.0% | |
| !!! | GCTTTTGGAACTTCAACTCT+TGG | - | chr2_1:77704169-77704188 | Msa0227100:CDS | 40.0% |
| TATCTTTAACCAGTGTCTCG+GGG | + | chr2_1:77704396-77704415 | None:intergenic | 40.0% | |
| TATGATTAACCAGTGCCTCT+GGG | - | chr2_1:77704519-77704538 | Msa0227100:CDS | 40.0% | |
| TAAATATGGGTCCCGTTAAC+CGG | + | chr2_1:77704548-77704567 | None:intergenic | 40.0% | |
| ATAACATGGTGTCTTGCAGA+TGG | - | chr2_1:77704973-77704992 | Msa0227100:intron | 40.0% | |
| TAACATGGTGTCTTGCAGAT+GGG | - | chr2_1:77704974-77704993 | Msa0227100:intron | 40.0% | |
| CGAAATGACGGTGATTGATT+TGG | - | chr2_1:77705006-77705025 | Msa0227100:intron | 40.0% | |
| GCTTGCATGATACACTAGAA+CGG | + | chr2_1:77705070-77705089 | None:intergenic | 40.0% | |
| AGTGTATCATGCAAGCTGTT+TGG | - | chr2_1:77705074-77705093 | Msa0227100:CDS | 40.0% | |
| GTGTATCATGCAAGCTGTTT+GGG | - | chr2_1:77705075-77705094 | Msa0227100:CDS | 40.0% | |
| TGTATCATGCAAGCTGTTTG+GGG | - | chr2_1:77705076-77705095 | Msa0227100:CDS | 40.0% | |
| TAATGGAATGGGGATAAGGG+AGG | + | chr2_1:77702911-77702930 | None:intergenic | 45.0% | |
| CACATCACAGAACATCATGG+AGG | - | chr2_1:77702948-77702967 | Msa0227100:three_prime_UTR | 45.0% | |
| TGGAGGAATCATGGGAACAT+TGG | - | chr2_1:77702965-77702984 | Msa0227100:exon | 45.0% | |
| ! | GGAACATTGGCCTCTTCATT+CGG | - | chr2_1:77702978-77702997 | Msa0227100:CDS | 45.0% |
| ! | GGTGATGTTGAGGATTTGCT+AGG | - | chr2_1:77703152-77703171 | Msa0227100:intron | 45.0% |
| TGAGCCATCCATCTCATTAG+AGG | + | chr2_1:77703273-77703292 | None:intergenic | 45.0% | |
| GGTGTAGTAGTAGTAGTAGC+TGG | + | chr2_1:77703383-77703402 | None:intergenic | 45.0% | |
| GCACTTTCAGCTACTATTCC+TGG | - | chr2_1:77703581-77703600 | Msa0227100:intron | 45.0% | |
| TTTGTCCCGGTATTTAACCG+AGG | - | chr2_1:77703720-77703739 | Msa0227100:intron | 45.0% | |
| TTGTCCCGGTATTTAACCGA+GGG | - | chr2_1:77703721-77703740 | Msa0227100:intron | 45.0% | |
| CATTCAGATCCACTGTGAGA+AGG | - | chr2_1:77704072-77704091 | Msa0227100:CDS | 45.0% | |
| TGTCACTGCTAGCAGTGTAT+TGG | - | chr2_1:77704147-77704166 | Msa0227100:CDS | 45.0% | |
| !!! | GCTAGCAGTGTATTGGCTTT+TGG | - | chr2_1:77704154-77704173 | Msa0227100:CDS | 45.0% |
| ! | TGGCTTTACTATTGTCGCTC+AGG | - | chr2_1:77704189-77704208 | Msa0227100:intron | 45.0% |
| GTATGATTAACCAGTGCCTC+TGG | - | chr2_1:77704518-77704537 | Msa0227100:CDS | 45.0% | |
| TAATGGAATGGGGATAAGGG+AGG | + | chr2_1:77702911-77702930 | None:intergenic | 45.0% | |
| CACATCACAGAACATCATGG+AGG | - | chr2_1:77702948-77702967 | Msa0227100:three_prime_UTR | 45.0% | |
| TGGAGGAATCATGGGAACAT+TGG | - | chr2_1:77702965-77702984 | Msa0227100:exon | 45.0% | |
| ! | GGAACATTGGCCTCTTCATT+CGG | - | chr2_1:77702978-77702997 | Msa0227100:CDS | 45.0% |
| ! | GGTGATGTTGAGGATTTGCT+AGG | - | chr2_1:77703152-77703171 | Msa0227100:intron | 45.0% |
| TGAGCCATCCATCTCATTAG+AGG | + | chr2_1:77703273-77703292 | None:intergenic | 45.0% | |
| GGTGTAGTAGTAGTAGTAGC+TGG | + | chr2_1:77703383-77703402 | None:intergenic | 45.0% | |
| GCACTTTCAGCTACTATTCC+TGG | - | chr2_1:77703581-77703600 | Msa0227100:intron | 45.0% | |
| TTTGTCCCGGTATTTAACCG+AGG | - | chr2_1:77703720-77703739 | Msa0227100:intron | 45.0% | |
| TTGTCCCGGTATTTAACCGA+GGG | - | chr2_1:77703721-77703740 | Msa0227100:intron | 45.0% | |
| CATTCAGATCCACTGTGAGA+AGG | - | chr2_1:77704072-77704091 | Msa0227100:CDS | 45.0% | |
| TGTCACTGCTAGCAGTGTAT+TGG | - | chr2_1:77704147-77704166 | Msa0227100:CDS | 45.0% | |
| !!! | GCTAGCAGTGTATTGGCTTT+TGG | - | chr2_1:77704154-77704173 | Msa0227100:CDS | 45.0% |
| ! | TGGCTTTACTATTGTCGCTC+AGG | - | chr2_1:77704189-77704208 | Msa0227100:intron | 45.0% |
| GTATGATTAACCAGTGCCTC+TGG | - | chr2_1:77704518-77704537 | Msa0227100:CDS | 45.0% | |
| !!! | ATTAATGATTTTATTTTATA+CGG | - | chr2_1:77703780-77703799 | Msa0227100:intron | 5.0% |
| !!! | TAATTATTTTAATTATTTGT+AGG | - | chr2_1:77704707-77704726 | Msa0227100:CDS | 5.0% |
| !! | TAAAAAAATCATTTATAATT+TGG | + | chr2_1:77705112-77705131 | None:intergenic | 5.0% |
| !!! | ATTAATGATTTTATTTTATA+CGG | - | chr2_1:77703780-77703799 | Msa0227100:intron | 5.0% |
| !!! | TAATTATTTTAATTATTTGT+AGG | - | chr2_1:77704707-77704726 | Msa0227100:CDS | 5.0% |
| !! | TAAAAAAATCATTTATAATT+TGG | + | chr2_1:77705112-77705131 | None:intergenic | 5.0% |
| ATGGATGGCTCAGATTGCTC+AGG | - | chr2_1:77703281-77703300 | Msa0227100:intron | 50.0% | |
| TGGATGGCTCAGATTGCTCA+GGG | - | chr2_1:77703282-77703301 | Msa0227100:intron | 50.0% | |
| !! | TGGACGGTGTTGATGAAGGA+TGG | + | chr2_1:77703316-77703335 | None:intergenic | 50.0% |
| AGAACGTGTGAAGGAGCTAG+AGG | - | chr2_1:77703901-77703920 | Msa0227100:CDS | 50.0% | |
| GTGTCTTGCAGATGGGTGAA+GGG | - | chr2_1:77704981-77705000 | Msa0227100:intron | 50.0% | |
| ! | GGGTGAAGGGTACGAAATGA+CGG | - | chr2_1:77704994-77705013 | Msa0227100:intron | 50.0% |
| ATGGATGGCTCAGATTGCTC+AGG | - | chr2_1:77703281-77703300 | Msa0227100:intron | 50.0% | |
| TGGATGGCTCAGATTGCTCA+GGG | - | chr2_1:77703282-77703301 | Msa0227100:intron | 50.0% | |
| !! | TGGACGGTGTTGATGAAGGA+TGG | + | chr2_1:77703316-77703335 | None:intergenic | 50.0% |
| AGAACGTGTGAAGGAGCTAG+AGG | - | chr2_1:77703901-77703920 | Msa0227100:CDS | 50.0% | |
| GTGTCTTGCAGATGGGTGAA+GGG | - | chr2_1:77704981-77705000 | Msa0227100:intron | 50.0% | |
| ! | GGGTGAAGGGTACGAAATGA+CGG | - | chr2_1:77704994-77705013 | Msa0227100:intron | 50.0% |
| GGAATGGGGATAAGGGAGGA+TGG | + | chr2_1:77702907-77702926 | None:intergenic | 55.0% | |
| !! | GGAGTGGACGGTGTTGATGA+AGG | + | chr2_1:77703320-77703339 | None:intergenic | 55.0% |
| CATCAACACCGTCCACTCCA+AGG | - | chr2_1:77703321-77703340 | Msa0227100:intron | 55.0% | |
| GGTGTCTTGCAGATGGGTGA+AGG | - | chr2_1:77704980-77704999 | Msa0227100:intron | 55.0% | |
| GGAATGGGGATAAGGGAGGA+TGG | + | chr2_1:77702907-77702926 | None:intergenic | 55.0% | |
| !! | GGAGTGGACGGTGTTGATGA+AGG | + | chr2_1:77703320-77703339 | None:intergenic | 55.0% |
| CATCAACACCGTCCACTCCA+AGG | - | chr2_1:77703321-77703340 | Msa0227100:intron | 55.0% | |
| GGTGTCTTGCAGATGGGTGA+AGG | - | chr2_1:77704980-77704999 | Msa0227100:intron | 55.0% | |
| AACCAGTGTCTCGGGGACAC+CGG | + | chr2_1:77704389-77704408 | None:intergenic | 60.0% | |
| !! | AACCAGTGCCTCTGGGACAC+CGG | - | chr2_1:77704526-77704545 | Msa0227100:CDS | 60.0% |
| !! | GCCTCTGGGACACCGGTTAA+CGG | - | chr2_1:77704533-77704552 | Msa0227100:CDS | 60.0% |
| !! | CCTCTGGGACACCGGTTAAC+GGG | - | chr2_1:77704534-77704553 | Msa0227100:CDS | 60.0% |
| AACCAGTGTCTCGGGGACAC+CGG | + | chr2_1:77704389-77704408 | None:intergenic | 60.0% | |
| !! | AACCAGTGCCTCTGGGACAC+CGG | - | chr2_1:77704526-77704545 | Msa0227100:CDS | 60.0% |
| !! | GCCTCTGGGACACCGGTTAA+CGG | - | chr2_1:77704533-77704552 | Msa0227100:CDS | 60.0% |
| !! | CCTCTGGGACACCGGTTAAC+GGG | - | chr2_1:77704534-77704553 | Msa0227100:CDS | 60.0% |
| AACCGGTGTCCCCGAGACAC+TGG | - | chr2_1:77704384-77704403 | Msa0227100:intron | 65.0% | |
| ! | AACCGGTGTCCCAGAGGCAC+TGG | + | chr2_1:77704531-77704550 | None:intergenic | 65.0% |
| CCCGTTAACCGGTGTCCCAG+AGG | + | chr2_1:77704537-77704556 | None:intergenic | 65.0% | |
| AACCGGTGTCCCCGAGACAC+TGG | - | chr2_1:77704384-77704403 | Msa0227100:intron | 65.0% | |
| ! | AACCGGTGTCCCAGAGGCAC+TGG | + | chr2_1:77704531-77704550 | None:intergenic | 65.0% |
| CCCGTTAACCGGTGTCCCAG+AGG | + | chr2_1:77704537-77704556 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 77702830 | 77705216 | 77702830 | ID=Msa0227100;Name=Msa0227100 |
| chr2_1 | mRNA | 77702830 | 77705216 | 77702830 | ID=Msa0227100-mRNA-1;Parent=Msa0227100;Name=Msa0227100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=29|1|0.75|1|1|1|4|141|351 |
| chr2_1 | exon | 77702830 | 77703054 | 77702830 | ID=Msa0227100-mRNA-1:exon:23691;Parent=Msa0227100-mRNA-1 |
| chr2_1 | exon | 77703836 | 77704198 | 77703836 | ID=Msa0227100-mRNA-1:exon:23690;Parent=Msa0227100-mRNA-1 |
| chr2_1 | exon | 77704433 | 77704900 | 77704433 | ID=Msa0227100-mRNA-1:exon:23689;Parent=Msa0227100-mRNA-1 |
| chr2_1 | exon | 77705047 | 77705216 | 77705047 | ID=Msa0227100-mRNA-1:exon:23688;Parent=Msa0227100-mRNA-1 |
| chr2_1 | five_prime_UTR | 77705188 | 77705216 | 77705188 | ID=Msa0227100-mRNA-1:five_prime_utr;Parent=Msa0227100-mRNA-1 |
| chr2_1 | CDS | 77705047 | 77705187 | 77705047 | ID=Msa0227100-mRNA-1:cds;Parent=Msa0227100-mRNA-1 |
| chr2_1 | CDS | 77704433 | 77704900 | 77704433 | ID=Msa0227100-mRNA-1:cds;Parent=Msa0227100-mRNA-1 |
| chr2_1 | CDS | 77703836 | 77704198 | 77703836 | ID=Msa0227100-mRNA-1:cds;Parent=Msa0227100-mRNA-1 |
| chr2_1 | CDS | 77702971 | 77703054 | 77702971 | ID=Msa0227100-mRNA-1:cds;Parent=Msa0227100-mRNA-1 |
| chr2_1 | three_prime_UTR | 77702830 | 77702970 | 77702830 | ID=Msa0227100-mRNA-1:three_prime_utr;Parent=Msa0227100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
