AlfalfaGEDB | Msa0891670

M. sativa cultivar zhongmu-4 / Msa0891670

KEGG: -
GO: -
PFAM: PF13178.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891670	XP_013443349.1	94.932	296	15	0	1	296	161	456	0.0	574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891670	sp\|Q9FIT1\|IQD23_ARATH	39.700	267	88	12	1	263	161	358	7.54e-22	97.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891670	A0A072TIL7	94.932	296	15	0	1	296	161	456	0.0	574

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018010	Msa0891670	0.826780	2.248264e-54	-8.615850e-47
Msa0022230	Msa0891670	0.848758	4.997088e-60	-8.615850e-47
Msa0026120	Msa0891670	0.800624	1.320615e-48	-8.615850e-47
Msa0028450	Msa0891670	0.809482	1.851509e-50	-8.615850e-47
Msa0033580	Msa0891670	0.805732	1.157948e-49	-8.615850e-47
Msa0039200	Msa0891670	0.808558	2.919988e-50	-8.615850e-47
Msa0046670	Msa0891670	0.823679	1.216752e-53	-8.615850e-47
Msa0049670	Msa0891670	0.805041	1.616428e-49	-8.615850e-47
Msa0050560	Msa0891670	0.808925	2.437188e-50	-8.615850e-47
Msa0072710	Msa0891670	0.816597	5.094992e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891670	MtrunA17_Chr6g0472551	94.932	296	15	0	1	296	161	456	0.0	574
Msa0891670	MtrunA17_Chr1g0203711	65.781	301	80	9	1	296	159	441	5.39e-118	346
Msa0891670	MtrunA17_Chr4g0057321	33.226	310	176	8	2	296	133	426	1.55e-34	129
Msa0891670	MtrunA17_Chr1g0204901	33.516	182	104	7	87	261	215	386	1.48e-11	64.7
Msa0891670	MtrunA17_Chr1g0166431	33.951	162	94	6	107	261	216	371	3.40e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891670	AT5G62070.1	39.700	267	88	12	1	263	161	358	7.66e-23	97.8
Msa0891670	AT5G07240.1	35.273	275	91	13	1	263	150	349	2.68e-22	96.3
Msa0891670	AT5G07240.2	35.273	275	91	13	1	263	196	395	2.91e-22	96.7
Msa0891670	AT4G23060.1	29.206	315	160	11	2	296	212	483	9.23e-15	74.7

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Find 75 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCAAAAGTCAACCATG+TGG	0.740937	6_1:+67728061	None:intergenic
AAATGCCTGTGGACTACTCT+CGG	0.594597	6_1:+67728799	None:intergenic
AAATTCTTGAAGTAGATACT+TGG	0.490960	6_1:-67729015	Msa0891670:CDS
AAATTGCAAGCATTAGTGAG+AGG	0.679400	6_1:-67730548	Msa0891670:five_prime_UTR
AAATTGGTTAGACAGTTGGA+TGG	0.594225	6_1:-67729107	Msa0891670:CDS
AACACATGGAGCCAAACCGT+CGG	0.647970	6_1:-67729079	Msa0891670:CDS
AACCGCCGAGAGTAGTCCAC+AGG	0.576504	6_1:-67728804	Msa0891670:CDS
AACTTTGAAAGAGCCCGGTT+AGG	0.518762	6_1:-67729133	Msa0891670:CDS
AAGTATGAAATTAAGACAAA+AGG	0.500227	6_1:-67727977	Msa0891670:three_prime_UTR
AATCATGAATACCTTGAGGA+TGG	0.581465	6_1:+67729368	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCATTGAAATCGTAAATGT+TGG	-	chr6_1:67728183-67728202	Msa0891670:three_prime_UTR	30.0%
TTGTTGGAAAAGCTATGTAA+TGG	-	chr6_1:67728480-67728499	Msa0891670:CDS	30.0%
AGATTCCAAATTGCAAGAAT+TGG	+	chr6_1:67728617-67728636	None:intergenic	30.0%
GTAGGCATCATCATATAATT+TGG	+	chr6_1:67728941-67728960	None:intergenic	30.0%
TATCCAATCCTTACAATTTC+AGG	-	chr6_1:67728978-67728997	Msa0891670:CDS	30.0%
ATCCAATCCTTACAATTTCA+GGG	-	chr6_1:67728979-67728998	Msa0891670:CDS	30.0%
ATTTAGTCCCTGAAATTGTA+AGG	+	chr6_1:67728989-67729008	None:intergenic	30.0%
GGATTCATAGATGATTTACA+TGG	-	chr6_1:67729205-67729224	Msa0891670:intron	30.0%
AGTATACATGTAACATGTGT+TGG	-	chr6_1:67729296-67729315	Msa0891670:intron	30.0%
CTATGTTGTGATTTCAAATG+TGG	+	chr6_1:67729542-67729561	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	67727943	67730607	67727943	ID=Msa0891670;Name=Msa0891670
chr6_1	mRNA	67727943	67730607	67727943	ID=Msa0891670-mRNA-1;Parent=Msa0891670;Name=Msa0891670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=88\|1\|1\|1\|1\|1\|3\|535\|296
chr6_1	exon	67727943	67729188	67727943	ID=Msa0891670-mRNA-1:exon:12037;Parent=Msa0891670-mRNA-1
chr6_1	exon	67729380	67729448	67729380	ID=Msa0891670-mRNA-1:exon:12036;Parent=Msa0891670-mRNA-1
chr6_1	exon	67730409	67730607	67730409	ID=Msa0891670-mRNA-1:exon:12035;Parent=Msa0891670-mRNA-1
chr6_1	five_prime_UTR	67730520	67730607	67730520	ID=Msa0891670-mRNA-1:five_prime_utr;Parent=Msa0891670-mRNA-1
chr6_1	CDS	67730409	67730519	67730409	ID=Msa0891670-mRNA-1:cds;Parent=Msa0891670-mRNA-1
chr6_1	CDS	67729380	67729448	67729380	ID=Msa0891670-mRNA-1:cds;Parent=Msa0891670-mRNA-1
chr6_1	CDS	67728478	67729188	67728478	ID=Msa0891670-mRNA-1:cds;Parent=Msa0891670-mRNA-1
chr6_1	three_prime_UTR	67727943	67728477	67727943	ID=Msa0891670-mRNA-1:three_prime_utr;Parent=Msa0891670-mRNA-1

Gene Sequence

>Msa0891670

ATGCTAAGACGAATGCAAACATTGGTTCGACTTCAGTCTCGGGCACGAGCAAGTCGTGTGCACATTTCGGATAATATGCACTCTTTCAAGTCTTCGCTTTCTCGTTACCCTGTTCCTGATGATTATGAACACCCACTTCGCGTCTATAGTATGAAATTTGATGGATCTTCCATCCTCAAGAGATGTAGCTCAAATGCAAATTTTAGAGACATGAACTTTGAAAGAGCCCGGTTAGGTTCAAATTGGTTAGACAGTTGGATGGAAGAAAACACATGGAGCCAAACCGTCGGCGCTTCATCGAAAAATGTAAATGATGATGAGAAGAGTGACAAAATTCTTGAAGTAGATACTTGGAAACCACATTTGAAATCACAACATAGTACTAGCACCTCTTTTCAACATCATTATTCATCTTCTGATTACAATAATGAAAATTTTATGGTACATGAGTCGCCGTCGAAACGCTCTTCTAAAGCTTATAATCCAAGTCTCTCTTCTATGAAGCATCAGAAAGGAAAAGAAGAAGAAGTAGCTTCTTCCCGAACCGCCGAGAGTAGTCCACAGGCATTTTTGGCTTCTTCAAGACTCGAAAGTGGTTCGAGGCGAGGTCCTTTTACACCTACTAAAAGTGAGAGTTCATGGGGATTTTTCAATGCTTACTCTGGTTATCCTAGTTATATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTAGAGTTTGAGAGATATGGTTCATCTACTAGGTCTATTCAAGGCCTTTGGGAATCAGGGTCTAATTCAGAAATAGATTCTGATTTTAGGAGCAAGGTTTATCCAGCCACAAGTAGCTTGAACAGAATTGGGAGTAGTACCAATTTAAGGTGA

Protein sequence

>Msa0891670

MLRRMQTLVRLQSRARASRVHISDNMHSFKSSLSRYPVPDDYEHPLRVYSMKFDGSSILKRCSSNANFRDMNFERARLGSNWLDSWMEENTWSQTVGASSKNVNDDEKSDKILEVDTWKPHLKSQHSTSTSFQHHYSSSDYNNENFMVHESPSKRSSKAYNPSLSSMKHQKGKEEEVASSRTAESSPQAFLASSRLESGSRRGPFTPTKSESSWGFFNAYSGYPSYMANTQSSRAKVRSQSAPRQRLEFERYGSSTRSIQGLWESGSNSEIDSDFRSKVYPATSSLNRIGSSTNLR*