Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308470 | AFK40933.1 | 97.778 | 90 | 2 | 0 | 13 | 102 | 264 | 353 | 6.96e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308470 | sp|P24102|PER22_ARATH | 52.222 | 90 | 36 | 2 | 13 | 102 | 267 | 349 | 6.52e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011450 | Msa0308470 | -0.805312 | 1.418299e-49 | -8.615850e-47 |
| Msa0030700 | Msa0308470 | 0.809710 | 1.654306e-50 | -8.615850e-47 |
| Msa0078120 | Msa0308470 | 0.811144 | 8.108507e-51 | -8.615850e-47 |
| Msa0113370 | Msa0308470 | -0.810550 | 1.090199e-50 | -8.615850e-47 |
| Msa0138990 | Msa0308470 | -0.802216 | 6.231949e-49 | -8.615850e-47 |
| Msa0152850 | Msa0308470 | 0.825363 | 4.883140e-54 | -8.615850e-47 |
| Msa0217060 | Msa0308470 | 0.823826 | 1.123646e-53 | -8.615850e-47 |
| Msa0220400 | Msa0308470 | -0.800849 | 1.188158e-48 | -8.615850e-47 |
| Msa0234150 | Msa0308470 | 0.820813 | 5.624604e-53 | -8.615850e-47 |
| Msa0256920 | Msa0308470 | 0.803968 | 2.706130e-49 | -8.615850e-47 |
| Msa0287480 | Msa0308470 | 0.838872 | 2.221546e-57 | -8.615850e-47 |
| Msa0308470 | Msa0365210 | 0.819348 | 1.217323e-52 | -8.615850e-47 |
| Msa0308470 | Msa0375330 | -0.801283 | 9.685410e-49 | -8.615850e-47 |
| Msa0308470 | Msa0375790 | 0.801139 | 1.036426e-48 | -8.615850e-47 |
| Msa0308470 | Msa0402070 | -0.831265 | 1.840627e-55 | -8.615850e-47 |
| Msa0308470 | Msa0415100 | 0.803314 | 3.698412e-49 | -8.615850e-47 |
| Msa0308470 | Msa0657710 | 0.814895 | 1.220614e-51 | -8.615850e-47 |
| Msa0308470 | Msa0657720 | 0.841352 | 5.005173e-58 | -8.615850e-47 |
| Msa0308470 | Msa0702790 | 0.841164 | 5.610134e-58 | -8.615850e-47 |
| Msa0308470 | Msa0702800 | 0.817307 | 3.529262e-52 | -8.615850e-47 |
| Msa0308470 | Msa0712880 | 0.813365 | 2.656480e-51 | -8.615850e-47 |
| Msa0308470 | Msa0723090 | 0.808183 | 3.510444e-50 | -8.615850e-47 |
| Msa0308470 | Msa0744640 | 0.806585 | 7.660363e-50 | -8.615850e-47 |
| Msa0308470 | Msa0778570 | 0.803061 | 4.171957e-49 | -8.615850e-47 |
| Msa0308470 | Msa0810330 | 0.800290 | 1.544847e-48 | -8.615850e-47 |
| Msa0308470 | Msa0828950 | 0.848594 | 5.548691e-60 | -8.615850e-47 |
| Msa0308470 | Msa0828960 | 0.816271 | 6.027350e-52 | -8.615850e-47 |
| Msa0308470 | Msa0841730 | 0.807448 | 5.030558e-50 | -8.615850e-47 |
| Msa0308470 | Msa0862480 | -0.800713 | 1.266479e-48 | -8.615850e-47 |
| Msa0308470 | Msa0879930 | 0.813066 | 3.089281e-51 | -8.615850e-47 |
| Msa0308470 | Msa0905570 | 0.818206 | 2.212627e-52 | -8.615850e-47 |
| Msa0308470 | Msa1012710 | 0.802225 | 6.205331e-49 | -8.615850e-47 |
| Msa0308470 | Msa1092310 | 0.800577 | 1.349895e-48 | -8.615850e-47 |
| Msa0308470 | Msa1136760 | 0.801775 | 7.678839e-49 | -8.615850e-47 |
| Msa0308470 | Msa1202800 | 0.827607 | 1.425329e-54 | -8.615850e-47 |
| Msa0308470 | Msa1238660 | 0.800020 | 1.753160e-48 | -8.615850e-47 |
| Msa0308470 | Msa1255210 | 0.843841 | 1.093015e-58 | -8.615850e-47 |
| Msa0308470 | Msa1295650 | 0.845225 | 4.636631e-59 | -8.615850e-47 |
| Msa0308470 | Msa1319560 | 0.800617 | 1.325368e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308470 | MtrunA17_Chr2g0292181 | 97.778 | 90 | 2 | 0 | 13 | 102 | 273 | 362 | 9.85e-57 | 179 |
| Msa0308470 | MtrunA17_Chr2g0292241 | 85.556 | 90 | 11 | 1 | 15 | 102 | 266 | 355 | 4.84e-47 | 153 |
| Msa0308470 | MtrunA17_Chr2g0292211 | 82.955 | 88 | 14 | 1 | 15 | 102 | 277 | 363 | 2.08e-44 | 147 |
| Msa0308470 | MtrunA17_Chr2g0292251 | 84.615 | 78 | 12 | 0 | 15 | 92 | 265 | 342 | 2.59e-37 | 128 |
| Msa0308470 | MtrunA17_Chr2g0292151 | 72.527 | 91 | 24 | 1 | 13 | 102 | 264 | 354 | 2.19e-36 | 125 |
| Msa0308470 | MtrunA17_Chr2g0292111 | 70.652 | 92 | 25 | 1 | 13 | 102 | 264 | 355 | 8.99e-35 | 122 |
| Msa0308470 | MtrunA17_Chr2g0291751 | 72.222 | 90 | 23 | 1 | 15 | 102 | 266 | 355 | 9.68e-35 | 121 |
| Msa0308470 | MtrunA17_Chr2g0292281 | 60.920 | 87 | 32 | 1 | 15 | 101 | 152 | 236 | 9.90e-32 | 111 |
| Msa0308470 | MtrunA17_Chr2g0292291 | 62.353 | 85 | 30 | 1 | 17 | 101 | 270 | 352 | 5.17e-28 | 103 |
| Msa0308470 | MtrunA17_Chr2g0292271 | 58.824 | 85 | 35 | 0 | 17 | 101 | 268 | 352 | 7.37e-25 | 95.5 |
| Msa0308470 | MtrunA17_Chr2g0292091 | 58.824 | 85 | 33 | 1 | 10 | 94 | 256 | 338 | 2.95e-24 | 94.0 |
| Msa0308470 | MtrunA17_Chr2g0292261 | 58.427 | 89 | 32 | 2 | 15 | 101 | 266 | 351 | 2.34e-23 | 91.7 |
| Msa0308470 | MtrunA17_Chr2g0292101 | 56.977 | 86 | 33 | 2 | 17 | 102 | 264 | 345 | 5.85e-22 | 87.8 |
| Msa0308470 | MtrunA17_Chr7g0258811 | 60.938 | 64 | 25 | 0 | 16 | 79 | 308 | 371 | 1.34e-20 | 84.3 |
| Msa0308470 | MtrunA17_Chr1g0175561 | 58.462 | 65 | 27 | 0 | 15 | 79 | 262 | 326 | 9.02e-20 | 81.6 |
| Msa0308470 | MtrunA17_Chr4g0013171 | 53.846 | 65 | 28 | 1 | 15 | 79 | 259 | 321 | 5.81e-15 | 68.6 |
| Msa0308470 | MtrunA17_Chr2g0320031 | 56.250 | 64 | 27 | 1 | 16 | 79 | 257 | 319 | 1.13e-14 | 67.8 |
| Msa0308470 | MtrunA17_Chr3g0129051 | 56.667 | 60 | 24 | 1 | 16 | 75 | 261 | 318 | 1.22e-14 | 67.4 |
| Msa0308470 | MtrunA17_Chr5g0432441 | 56.923 | 65 | 26 | 1 | 15 | 79 | 264 | 326 | 1.30e-14 | 67.4 |
| Msa0308470 | MtrunA17_Chr5g0432341 | 52.308 | 65 | 31 | 0 | 15 | 79 | 257 | 321 | 2.14e-14 | 67.0 |
| Msa0308470 | MtrunA17_Chr3g0107881 | 52.308 | 65 | 31 | 0 | 15 | 79 | 260 | 324 | 2.28e-14 | 67.0 |
| Msa0308470 | MtrunA17_Chr3g0106901 | 50.769 | 65 | 30 | 1 | 15 | 79 | 261 | 323 | 2.70e-14 | 66.6 |
| Msa0308470 | MtrunA17_Chr5g0432331 | 53.846 | 65 | 30 | 0 | 15 | 79 | 288 | 352 | 2.94e-14 | 66.6 |
| Msa0308470 | MtrunA17_Chr5g0432351 | 52.308 | 65 | 31 | 0 | 15 | 79 | 257 | 321 | 3.07e-14 | 66.6 |
| Msa0308470 | MtrunA17_Chr5g0438021 | 54.688 | 64 | 27 | 1 | 16 | 79 | 264 | 325 | 3.56e-14 | 66.2 |
| Msa0308470 | MtrunA17_Chr3g0129061 | 55.000 | 60 | 25 | 1 | 16 | 75 | 261 | 318 | 4.04e-14 | 66.2 |
| Msa0308470 | MtrunA17_Chr4g0038161 | 56.923 | 65 | 26 | 1 | 15 | 79 | 258 | 320 | 1.36e-13 | 64.7 |
| Msa0308470 | MtrunA17_Chr5g0400331 | 52.308 | 65 | 30 | 1 | 16 | 79 | 267 | 331 | 2.77e-13 | 63.9 |
| Msa0308470 | MtrunA17_Chr2g0299691 | 50.000 | 68 | 31 | 1 | 16 | 80 | 292 | 359 | 3.45e-13 | 63.5 |
| Msa0308470 | MtrunA17_Chr5g0432361 | 42.188 | 64 | 37 | 0 | 15 | 78 | 45 | 108 | 4.97e-13 | 60.1 |
| Msa0308470 | MtrunA17_Chr5g0432401 | 45.312 | 64 | 35 | 0 | 15 | 78 | 222 | 285 | 5.13e-13 | 62.8 |
| Msa0308470 | MtrunA17_Chr4g0038171 | 53.846 | 65 | 29 | 1 | 15 | 79 | 258 | 321 | 6.85e-13 | 62.8 |
| Msa0308470 | MtrunA17_Chr4g0013181 | 50.769 | 65 | 30 | 1 | 15 | 79 | 291 | 353 | 7.28e-13 | 62.8 |
| Msa0308470 | MtrunA17_Chr4g0043391 | 53.846 | 65 | 29 | 1 | 15 | 79 | 261 | 324 | 8.52e-13 | 62.4 |
| Msa0308470 | MtrunA17_Chr3g0129041 | 56.250 | 64 | 26 | 1 | 16 | 79 | 261 | 322 | 1.21e-12 | 62.0 |
| Msa0308470 | MtrunA17_Chr3g0106921 | 52.308 | 65 | 29 | 1 | 15 | 79 | 258 | 320 | 1.41e-12 | 62.0 |
| Msa0308470 | MtrunA17_Chr4g0038151 | 53.846 | 65 | 28 | 1 | 15 | 79 | 259 | 321 | 1.76e-12 | 61.6 |
| Msa0308470 | MtrunA17_Chr3g0114451 | 45.455 | 66 | 34 | 1 | 14 | 79 | 255 | 318 | 2.08e-12 | 61.2 |
| Msa0308470 | MtrunA17_Chr7g0244461 | 43.284 | 67 | 36 | 1 | 13 | 79 | 248 | 312 | 2.51e-12 | 61.2 |
| Msa0308470 | MtrunA17_Chr3g0104101 | 46.269 | 67 | 34 | 2 | 16 | 80 | 84 | 150 | 5.02e-12 | 58.5 |
| Msa0308470 | MtrunA17_Chr5g0421411 | 45.714 | 70 | 30 | 3 | 16 | 80 | 220 | 286 | 7.52e-12 | 59.7 |
| Msa0308470 | MtrunA17_Chr5g0402581 | 52.381 | 63 | 28 | 1 | 17 | 79 | 266 | 326 | 7.58e-12 | 59.7 |
| Msa0308470 | MtrunA17_Chr5g0404721 | 45.312 | 64 | 34 | 1 | 16 | 79 | 268 | 330 | 9.17e-12 | 59.7 |
| Msa0308470 | MtrunA17_Chr4g0070951 | 49.254 | 67 | 32 | 1 | 16 | 80 | 264 | 330 | 1.03e-11 | 59.3 |
| Msa0308470 | MtrunA17_Chr2g0320061 | 51.562 | 64 | 30 | 1 | 16 | 79 | 256 | 318 | 1.22e-11 | 59.3 |
| Msa0308470 | MtrunA17_Chr7g0254201 | 43.284 | 67 | 36 | 1 | 15 | 81 | 250 | 314 | 1.55e-11 | 58.9 |
| Msa0308470 | MtrunA17_Chr6g0467161 | 43.939 | 66 | 35 | 1 | 16 | 81 | 275 | 338 | 2.17e-11 | 58.5 |
| Msa0308470 | MtrunA17_Chr4g0013191 | 47.692 | 65 | 32 | 1 | 15 | 79 | 278 | 340 | 4.13e-11 | 57.8 |
| Msa0308470 | MtrunA17_Chr4g0013201 | 47.692 | 65 | 32 | 1 | 15 | 79 | 276 | 338 | 6.40e-11 | 57.4 |
| Msa0308470 | MtrunA17_Chr2g0320051 | 50.000 | 64 | 31 | 1 | 16 | 79 | 256 | 318 | 6.53e-11 | 57.0 |
| Msa0308470 | MtrunA17_Chr7g0225221 | 46.875 | 64 | 32 | 1 | 16 | 79 | 259 | 320 | 8.23e-11 | 57.0 |
| Msa0308470 | MtrunA17_Chr1g0148021 | 44.444 | 63 | 33 | 1 | 17 | 79 | 268 | 328 | 8.53e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308470 | AT2G38380.1 | 52.222 | 90 | 36 | 2 | 13 | 102 | 267 | 349 | 6.63e-23 | 90.9 |
| Msa0308470 | AT2G38390.1 | 51.724 | 87 | 35 | 2 | 16 | 102 | 270 | 349 | 5.57e-21 | 85.5 |
| Msa0308470 | AT5G06730.1 | 54.286 | 70 | 32 | 0 | 13 | 82 | 268 | 337 | 1.18e-20 | 84.7 |
| Msa0308470 | AT5G19880.1 | 50.746 | 67 | 33 | 0 | 13 | 79 | 263 | 329 | 5.65e-19 | 79.7 |
| Msa0308470 | AT4G08770.1 | 53.247 | 77 | 32 | 2 | 7 | 82 | 257 | 330 | 6.87e-19 | 79.7 |
| Msa0308470 | AT5G06720.1 | 55.224 | 67 | 30 | 0 | 13 | 79 | 267 | 333 | 7.90e-19 | 79.7 |
| Msa0308470 | AT4G08780.1 | 51.948 | 77 | 33 | 2 | 7 | 82 | 257 | 330 | 3.58e-18 | 77.8 |
| Msa0308470 | AT3G32980.1 | 50.725 | 69 | 33 | 1 | 16 | 83 | 270 | 338 | 3.67e-16 | 72.4 |
| Msa0308470 | AT3G49120.1 | 44.706 | 85 | 46 | 1 | 13 | 96 | 268 | 352 | 4.08e-16 | 72.4 |
| Msa0308470 | AT3G49110.1 | 44.706 | 85 | 46 | 1 | 13 | 96 | 269 | 353 | 8.16e-16 | 71.2 |
| Msa0308470 | AT1G14550.1 | 58.462 | 65 | 26 | 1 | 15 | 79 | 258 | 321 | 1.98e-15 | 70.1 |
| Msa0308470 | AT4G36430.1 | 53.846 | 65 | 29 | 1 | 16 | 80 | 268 | 331 | 6.84e-15 | 68.6 |
| Msa0308470 | AT1G14540.1 | 56.923 | 65 | 27 | 1 | 15 | 79 | 252 | 315 | 2.59e-14 | 67.0 |
| Msa0308470 | AT2G18150.1 | 50.794 | 63 | 30 | 1 | 17 | 79 | 275 | 336 | 2.17e-13 | 64.7 |
| Msa0308470 | AT1G71695.1 | 48.529 | 68 | 33 | 1 | 15 | 82 | 277 | 342 | 2.99e-13 | 64.3 |
| Msa0308470 | AT5G58390.1 | 49.231 | 65 | 31 | 1 | 15 | 79 | 254 | 316 | 4.95e-13 | 63.5 |
| Msa0308470 | AT5G05340.1 | 52.308 | 65 | 29 | 1 | 15 | 79 | 262 | 324 | 5.10e-13 | 63.5 |
| Msa0308470 | AT2G18140.1 | 50.794 | 63 | 30 | 1 | 17 | 79 | 274 | 335 | 6.63e-13 | 63.2 |
| Msa0308470 | AT5G66390.1 | 48.438 | 64 | 32 | 1 | 16 | 79 | 271 | 333 | 4.00e-12 | 60.8 |
| Msa0308470 | AT3G50990.1 | 46.875 | 64 | 33 | 1 | 16 | 79 | 279 | 341 | 6.53e-12 | 60.5 |
| Msa0308470 | AT1G68850.1 | 44.776 | 67 | 35 | 2 | 16 | 80 | 270 | 336 | 1.56e-11 | 59.3 |
| Msa0308470 | AT5G58400.1 | 51.562 | 64 | 29 | 1 | 16 | 79 | 264 | 325 | 1.97e-11 | 58.9 |
| Msa0308470 | AT5G15180.1 | 41.538 | 65 | 37 | 1 | 15 | 79 | 266 | 329 | 6.80e-11 | 57.4 |
Find 16 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAATCTTCAGGGTAAAA+AGG | 0.165515 | 2_4:+2740790 | Msa0308470:intron |
| TGAAGCCGCAATGATTAAAA+TGG | 0.207698 | 2_4:+2740916 | Msa0308470:CDS |
| ATGATTAAAATGGGTAATAT+TGG | 0.359326 | 2_4:+2740926 | Msa0308470:CDS |
| AATTCAAAATCAGTTGAACT+TGG | 0.466976 | 2_4:+2740998 | Msa0308470:CDS |
| GAAGCCGCAATGATTAAAAT+GGG | 0.473046 | 2_4:+2740917 | Msa0308470:CDS |
| GAACTTGTTGACAATGCTAA+TGG | 0.473631 | 2_4:-2740861 | Msa0308460:intron |
| TTCCACAGATTCATCGGGTA+TGG | 0.479176 | 2_4:+2741036 | Msa0308470:CDS |
| GGTAATATTGGTGTGCTGAC+CGG | 0.495092 | 2_4:+2740938 | Msa0308470:CDS |
| TGTGGCTTCCACAGATTCAT+CGG | 0.516272 | 2_4:+2741030 | Msa0308470:CDS |
| GTAATATTGGTGTGCTGACC+GGG | 0.523801 | 2_4:+2740939 | Msa0308470:CDS |
| GTGGCTTCCACAGATTCATC+GGG | 0.558019 | 2_4:+2741031 | Msa0308470:CDS |
| CAGATGTTGAGAAAAGCTCT+TGG | 0.566213 | 2_4:-2740829 | Msa0308460:CDS |
| AACCATACCCGATGAATCTG+TGG | 0.607568 | 2_4:-2741038 | Msa0308460:intron |
| TATGCAAGAACTGTCCGATG+TGG | 0.616078 | 2_4:+2740219 | None:intergenic |
| TGAACTTGGTCTAATGAATG+TGG | 0.630992 | 2_4:+2741012 | Msa0308470:CDS |
| ATGCAAGAACTGTCCGATGT+GGG | 0.631285 | 2_4:+2740220 | Msa0308470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATGAAATAAAATAATG+TGG | - | chr2_4:2740534-2740553 | Msa0308460:intron | 10.0% |
| !! | TTATATGAAATAAAATAATG+TGG | - | chr2_4:2740534-2740553 | Msa0308460:intron | 10.0% |
| !! | ATATAATGCCATAAATATTT+AGG | + | chr2_4:2740548-2740567 | Msa0308470:intron | 15.0% |
| !! | ATATAATGCCATAAATATTT+AGG | + | chr2_4:2740548-2740567 | Msa0308470:intron | 15.0% |
| !!! | TTCCTTTTCCTAAATATTTA+TGG | - | chr2_4:2740559-2740578 | Msa0308460:intron | 20.0% |
| !! | ATGATTAAAATGGGTAATAT+TGG | + | chr2_4:2740926-2740945 | Msa0308470:CDS | 20.0% |
| !!! | TTCCTTTTCCTAAATATTTA+TGG | - | chr2_4:2740559-2740578 | Msa0308460:intron | 20.0% |
| !! | ATGATTAAAATGGGTAATAT+TGG | + | chr2_4:2740926-2740945 | Msa0308470:CDS | 20.0% |
| ! | ACATTAATAGTGAAATCATG+TGG | - | chr2_4:2740307-2740326 | Msa0308460:intron | 25.0% |
| ! | TGCCATAAATATTTAGGAAA+AGG | + | chr2_4:2740554-2740573 | Msa0308470:intron | 25.0% |
| ! | TAGTTCTTGTCAAATTTATC+AGG | - | chr2_4:2740767-2740786 | Msa0308460:CDS | 25.0% |
| !!! | ATTACCCATTTTAATCATTG+CGG | - | chr2_4:2740924-2740943 | Msa0308460:intron | 25.0% |
| ! | AATTCAAAATCAGTTGAACT+TGG | + | chr2_4:2740998-2741017 | Msa0308470:CDS | 25.0% |
| ! | ACATTAATAGTGAAATCATG+TGG | - | chr2_4:2740307-2740326 | Msa0308460:intron | 25.0% |
| ! | TGCCATAAATATTTAGGAAA+AGG | + | chr2_4:2740554-2740573 | Msa0308470:intron | 25.0% |
| ! | TAGTTCTTGTCAAATTTATC+AGG | - | chr2_4:2740767-2740786 | Msa0308460:CDS | 25.0% |
| !!! | ATTACCCATTTTAATCATTG+CGG | - | chr2_4:2740924-2740943 | Msa0308460:intron | 25.0% |
| ! | AATTCAAAATCAGTTGAACT+TGG | + | chr2_4:2740998-2741017 | Msa0308470:CDS | 25.0% |
| ! | CAGTGTGTTTTGCAAAAAAA+AGG | - | chr2_4:2740267-2740286 | Msa0308460:intron | 30.0% |
| !! | TTTTGAAGAATTCAGTACGT+GGG | - | chr2_4:2740399-2740418 | Msa0308460:intron | 30.0% |
| GGATAGTACAATTAAGAACT+TGG | - | chr2_4:2740489-2740508 | Msa0308460:intron | 30.0% | |
| TCAAAATTGGCTAGGTTATT+TGG | - | chr2_4:2740734-2740753 | Msa0308460:intron | 30.0% | |
| ! | CAGTGTGTTTTGCAAAAAAA+AGG | - | chr2_4:2740267-2740286 | Msa0308460:intron | 30.0% |
| !! | TTTTGAAGAATTCAGTACGT+GGG | - | chr2_4:2740399-2740418 | Msa0308460:intron | 30.0% |
| GGATAGTACAATTAAGAACT+TGG | - | chr2_4:2740489-2740508 | Msa0308460:intron | 30.0% | |
| TCAAAATTGGCTAGGTTATT+TGG | - | chr2_4:2740734-2740753 | Msa0308460:intron | 30.0% | |
| TTTGAAGAATTCAGTACGTG+GGG | - | chr2_4:2740398-2740417 | Msa0308460:intron | 35.0% | |
| !! | CTTTTGAAGAATTCAGTACG+TGG | - | chr2_4:2740400-2740419 | Msa0308460:intron | 35.0% |
| TTACGCAAAATATGCCCTAA+TGG | + | chr2_4:2740701-2740720 | Msa0308470:intron | 35.0% | |
| AAATTGGCTAGGTTATTTGG+TGG | - | chr2_4:2740731-2740750 | Msa0308460:intron | 35.0% | |
| CAAATTTATCAGGAGTCGTT+GGG | - | chr2_4:2740757-2740776 | Msa0308460:CDS | 35.0% | |
| TCAAATTTATCAGGAGTCGT+TGG | - | chr2_4:2740758-2740777 | Msa0308460:CDS | 35.0% | |
| AACTACTACTCCAATCTTCA+GGG | + | chr2_4:2740782-2740801 | Msa0308470:intron | 35.0% | |
| TCCAATCTTCAGGGTAAAAA+GGG | + | chr2_4:2740791-2740810 | Msa0308470:intron | 35.0% | |
| !! | GAACTTGTTGACAATGCTAA+TGG | - | chr2_4:2740864-2740883 | Msa0308460:intron | 35.0% |
| TGAAGCCGCAATGATTAAAA+TGG | + | chr2_4:2740916-2740935 | Msa0308470:CDS | 35.0% | |
| GAAGCCGCAATGATTAAAAT+GGG | + | chr2_4:2740917-2740936 | Msa0308470:CDS | 35.0% | |
| !!! | TCTAATCTCTCCTTTTTTCC+CGG | - | chr2_4:2740960-2740979 | Msa0308460:intron | 35.0% |
| TGAACTTGGTCTAATGAATG+TGG | + | chr2_4:2741012-2741031 | Msa0308470:CDS | 35.0% | |
| TTTGAAGAATTCAGTACGTG+GGG | - | chr2_4:2740398-2740417 | Msa0308460:intron | 35.0% | |
| !! | CTTTTGAAGAATTCAGTACG+TGG | - | chr2_4:2740400-2740419 | Msa0308460:intron | 35.0% |
| TTACGCAAAATATGCCCTAA+TGG | + | chr2_4:2740701-2740720 | Msa0308470:intron | 35.0% | |
| AAATTGGCTAGGTTATTTGG+TGG | - | chr2_4:2740731-2740750 | Msa0308460:intron | 35.0% | |
| CAAATTTATCAGGAGTCGTT+GGG | - | chr2_4:2740757-2740776 | Msa0308460:CDS | 35.0% | |
| TCAAATTTATCAGGAGTCGT+TGG | - | chr2_4:2740758-2740777 | Msa0308460:CDS | 35.0% | |
| AACTACTACTCCAATCTTCA+GGG | + | chr2_4:2740782-2740801 | Msa0308470:intron | 35.0% | |
| TCCAATCTTCAGGGTAAAAA+GGG | + | chr2_4:2740791-2740810 | Msa0308470:intron | 35.0% | |
| !! | GAACTTGTTGACAATGCTAA+TGG | - | chr2_4:2740864-2740883 | Msa0308460:intron | 35.0% |
| TGAAGCCGCAATGATTAAAA+TGG | + | chr2_4:2740916-2740935 | Msa0308470:CDS | 35.0% | |
| GAAGCCGCAATGATTAAAAT+GGG | + | chr2_4:2740917-2740936 | Msa0308470:CDS | 35.0% | |
| !!! | TCTAATCTCTCCTTTTTTCC+CGG | - | chr2_4:2740960-2740979 | Msa0308460:intron | 35.0% |
| TGAACTTGGTCTAATGAATG+TGG | + | chr2_4:2741012-2741031 | Msa0308470:CDS | 35.0% | |
| ! | GTTTTCTGATAGTCCCACAT+CGG | - | chr2_4:2740236-2740255 | Msa0308460:intron | 40.0% |
| TATACTTAGTCGGTACGCTA+CGG | - | chr2_4:2740373-2740392 | Msa0308460:intron | 40.0% | |
| TTGAAGAATTCAGTACGTGG+GGG | - | chr2_4:2740397-2740416 | Msa0308460:intron | 40.0% | |
| AATTGCGAACCATGTGACTA+TGG | + | chr2_4:2740461-2740480 | Msa0308470:intron | 40.0% | |
| ATTGCGAACCATGTGACTAT+GGG | + | chr2_4:2740462-2740481 | Msa0308470:intron | 40.0% | |
| TATATTTGAGAACCACAGCG+GGG | - | chr2_4:2740510-2740529 | Msa0308460:intron | 40.0% | |
| CTATATTTGAGAACCACAGC+GGG | - | chr2_4:2740511-2740530 | Msa0308460:intron | 40.0% | |
| GCTATATTTGAGAACCACAG+CGG | - | chr2_4:2740512-2740531 | Msa0308460:intron | 40.0% | |
| GAACTACTACTCCAATCTTC+AGG | + | chr2_4:2740781-2740800 | Msa0308470:intron | 40.0% | |
| CTCCAATCTTCAGGGTAAAA+AGG | + | chr2_4:2740790-2740809 | Msa0308470:intron | 40.0% | |
| ! | ACCCTTTTTACCCTGAAGAT+TGG | - | chr2_4:2740795-2740814 | Msa0308460:CDS | 40.0% |
| CAGATGTTGAGAAAAGCTCT+TGG | - | chr2_4:2740832-2740851 | Msa0308460:CDS | 40.0% | |
| ! | CAAGAGCTTTTCTCAACATC+TGG | + | chr2_4:2740830-2740849 | Msa0308470:CDS | 40.0% |
| ! | GTTTTCTGATAGTCCCACAT+CGG | - | chr2_4:2740236-2740255 | Msa0308460:intron | 40.0% |
| TATACTTAGTCGGTACGCTA+CGG | - | chr2_4:2740373-2740392 | Msa0308460:intron | 40.0% | |
| TTGAAGAATTCAGTACGTGG+GGG | - | chr2_4:2740397-2740416 | Msa0308460:intron | 40.0% | |
| AATTGCGAACCATGTGACTA+TGG | + | chr2_4:2740461-2740480 | Msa0308470:intron | 40.0% | |
| ATTGCGAACCATGTGACTAT+GGG | + | chr2_4:2740462-2740481 | Msa0308470:intron | 40.0% | |
| TATATTTGAGAACCACAGCG+GGG | - | chr2_4:2740510-2740529 | Msa0308460:intron | 40.0% | |
| CTATATTTGAGAACCACAGC+GGG | - | chr2_4:2740511-2740530 | Msa0308460:intron | 40.0% | |
| GCTATATTTGAGAACCACAG+CGG | - | chr2_4:2740512-2740531 | Msa0308460:intron | 40.0% | |
| GAACTACTACTCCAATCTTC+AGG | + | chr2_4:2740781-2740800 | Msa0308470:intron | 40.0% | |
| CTCCAATCTTCAGGGTAAAA+AGG | + | chr2_4:2740790-2740809 | Msa0308470:intron | 40.0% | |
| ! | ACCCTTTTTACCCTGAAGAT+TGG | - | chr2_4:2740795-2740814 | Msa0308460:CDS | 40.0% |
| CAGATGTTGAGAAAAGCTCT+TGG | - | chr2_4:2740832-2740851 | Msa0308460:CDS | 40.0% | |
| ! | CAAGAGCTTTTCTCAACATC+TGG | + | chr2_4:2740830-2740849 | Msa0308470:CDS | 40.0% |
| ATGCAAGAACTGTCCGATGT+GGG | + | chr2_4:2740220-2740239 | Msa0308470:CDS | 45.0% | |
| ATACTTAGTCGGTACGCTAC+GGG | - | chr2_4:2740372-2740391 | Msa0308460:intron | 45.0% | |
| TGAAGAATTCAGTACGTGGG+GGG | - | chr2_4:2740396-2740415 | Msa0308460:intron | 45.0% | |
| ATTCGTTCTGGTACGTGGTA+CGG | - | chr2_4:2740444-2740463 | Msa0308460:intron | 45.0% | |
| ACATGGTTCGCAATTCGTTC+TGG | - | chr2_4:2740456-2740475 | Msa0308460:intron | 45.0% | |
| AACTTGGTCCCATAGTCACA+TGG | - | chr2_4:2740473-2740492 | Msa0308460:intron | 45.0% | |
| TAATTGTACTATCCCCGCTG+TGG | + | chr2_4:2740495-2740514 | Msa0308470:intron | 45.0% | |
| CGCAAAATATGCCCTAATGG+CGG | + | chr2_4:2740704-2740723 | Msa0308470:intron | 45.0% | |
| ! | TATTTGGTGGTCCGCCATTA+GGG | - | chr2_4:2740718-2740737 | Msa0308460:intron | 45.0% |
| ! | TTATTTGGTGGTCCGCCATT+AGG | - | chr2_4:2740719-2740738 | Msa0308460:intron | 45.0% |
| TCGTTGGGTCAAAATTGGCT+AGG | - | chr2_4:2740742-2740761 | Msa0308460:CDS | 45.0% | |
| AGGAGTCGTTGGGTCAAAAT+TGG | - | chr2_4:2740747-2740766 | Msa0308460:CDS | 45.0% | |
| ! | GGTAATATTGGTGTGCTGAC+CGG | + | chr2_4:2740938-2740957 | Msa0308470:CDS | 45.0% |
| ! | GTAATATTGGTGTGCTGACC+GGG | + | chr2_4:2740939-2740958 | Msa0308470:CDS | 45.0% |
| TGTGGCTTCCACAGATTCAT+CGG | + | chr2_4:2741030-2741049 | Msa0308470:CDS | 45.0% | |
| TTCCACAGATTCATCGGGTA+TGG | + | chr2_4:2741036-2741055 | Msa0308470:CDS | 45.0% | |
| AACCATACCCGATGAATCTG+TGG | - | chr2_4:2741041-2741060 | Msa0308460:intron | 45.0% | |
| ATGCAAGAACTGTCCGATGT+GGG | + | chr2_4:2740220-2740239 | Msa0308470:CDS | 45.0% | |
| ATACTTAGTCGGTACGCTAC+GGG | - | chr2_4:2740372-2740391 | Msa0308460:intron | 45.0% | |
| TGAAGAATTCAGTACGTGGG+GGG | - | chr2_4:2740396-2740415 | Msa0308460:intron | 45.0% | |
| ATTCGTTCTGGTACGTGGTA+CGG | - | chr2_4:2740444-2740463 | Msa0308460:intron | 45.0% | |
| ACATGGTTCGCAATTCGTTC+TGG | - | chr2_4:2740456-2740475 | Msa0308460:intron | 45.0% | |
| AACTTGGTCCCATAGTCACA+TGG | - | chr2_4:2740473-2740492 | Msa0308460:intron | 45.0% | |
| TAATTGTACTATCCCCGCTG+TGG | + | chr2_4:2740495-2740514 | Msa0308470:intron | 45.0% | |
| CGCAAAATATGCCCTAATGG+CGG | + | chr2_4:2740704-2740723 | Msa0308470:intron | 45.0% | |
| ! | TATTTGGTGGTCCGCCATTA+GGG | - | chr2_4:2740718-2740737 | Msa0308460:intron | 45.0% |
| ! | TTATTTGGTGGTCCGCCATT+AGG | - | chr2_4:2740719-2740738 | Msa0308460:intron | 45.0% |
| TCGTTGGGTCAAAATTGGCT+AGG | - | chr2_4:2740742-2740761 | Msa0308460:CDS | 45.0% | |
| AGGAGTCGTTGGGTCAAAAT+TGG | - | chr2_4:2740747-2740766 | Msa0308460:CDS | 45.0% | |
| ! | GGTAATATTGGTGTGCTGAC+CGG | + | chr2_4:2740938-2740957 | Msa0308470:CDS | 45.0% |
| ! | GTAATATTGGTGTGCTGACC+GGG | + | chr2_4:2740939-2740958 | Msa0308470:CDS | 45.0% |
| TGTGGCTTCCACAGATTCAT+CGG | + | chr2_4:2741030-2741049 | Msa0308470:CDS | 45.0% | |
| TTCCACAGATTCATCGGGTA+TGG | + | chr2_4:2741036-2741055 | Msa0308470:CDS | 45.0% | |
| AACCATACCCGATGAATCTG+TGG | - | chr2_4:2741041-2741060 | Msa0308460:intron | 45.0% | |
| ! | ACGTGGGGGGTATACTTAGT+CGG | - | chr2_4:2740383-2740402 | Msa0308460:intron | 50.0% |
| TTCGTTCTGGTACGTGGTAC+GGG | - | chr2_4:2740443-2740462 | Msa0308460:intron | 50.0% | |
| TCGCAATTCGTTCTGGTACG+TGG | - | chr2_4:2740449-2740468 | Msa0308460:intron | 50.0% | |
| GTGGCTTCCACAGATTCATC+GGG | + | chr2_4:2741031-2741050 | Msa0308470:CDS | 50.0% | |
| ! | ACGTGGGGGGTATACTTAGT+CGG | - | chr2_4:2740383-2740402 | Msa0308460:intron | 50.0% |
| TTCGTTCTGGTACGTGGTAC+GGG | - | chr2_4:2740443-2740462 | Msa0308460:intron | 50.0% | |
| TCGCAATTCGTTCTGGTACG+TGG | - | chr2_4:2740449-2740468 | Msa0308460:intron | 50.0% | |
| GTGGCTTCCACAGATTCATC+GGG | + | chr2_4:2741031-2741050 | Msa0308470:CDS | 50.0% | |
| TCTGGTACGTGGTACGGGTT+CGG | - | chr2_4:2740438-2740457 | Msa0308460:intron | 55.0% | |
| ! | GGTGTGCTGACCGGGAAAAA+AGG | + | chr2_4:2740947-2740966 | Msa0308470:CDS | 55.0% |
| TCTGGTACGTGGTACGGGTT+CGG | - | chr2_4:2740438-2740457 | Msa0308460:intron | 55.0% | |
| ! | GGTGTGCTGACCGGGAAAAA+AGG | + | chr2_4:2740947-2740966 | Msa0308470:CDS | 55.0% |
| CTGGTACGTGGTACGGGTTC+GGG | - | chr2_4:2740437-2740456 | Msa0308460:intron | 60.0% | |
| CTGGTACGTGGTACGGGTTC+GGG | - | chr2_4:2740437-2740456 | Msa0308460:intron | 60.0% | |
| GTGGTACGGGTTCGGGTACG+CGG | - | chr2_4:2740430-2740449 | Msa0308460:intron | 65.0% | |
| GTGGTACGGGTTCGGGTACG+CGG | - | chr2_4:2740430-2740449 | Msa0308460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 2740220 | 2741072 | 2740220 | ID=Msa0308470;Name=Msa0308470 |
| chr2_4 | mRNA | 2740220 | 2741072 | 2740220 | ID=Msa0308470-mRNA-1;Parent=Msa0308470;Name=Msa0308470-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0|0|0.5|1|1|2|0|102 |
| chr2_4 | exon | 2740220 | 2740258 | 2740220 | ID=Msa0308470-mRNA-1:exon:715;Parent=Msa0308470-mRNA-1 |
| chr2_4 | exon | 2740803 | 2741072 | 2740803 | ID=Msa0308470-mRNA-1:exon:716;Parent=Msa0308470-mRNA-1 |
| chr2_4 | CDS | 2740220 | 2740258 | 2740220 | ID=Msa0308470-mRNA-1:cds;Parent=Msa0308470-mRNA-1 |
| chr2_4 | CDS | 2740803 | 2741072 | 2740803 | ID=Msa0308470-mRNA-1:cds;Parent=Msa0308470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
