AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287480 MtrunA17_Chr2g0292181 98.913 276 3 0 1 276 87 362 0.0 556
Msa0287480 MtrunA17_Chr2g0292241 85.252 278 39 1 1 276 78 355 2.43e-174 485
Msa0287480 MtrunA17_Chr2g0292211 84.058 276 43 1 1 276 89 363 5.02e-170 474
Msa0287480 MtrunA17_Chr2g0292251 83.083 266 45 0 1 266 77 342 7.45e-163 456
Msa0287480 MtrunA17_Chr2g0292151 75.090 277 68 1 1 276 78 354 1.61e-148 419
Msa0287480 MtrunA17_Chr2g0292111 75.899 278 65 1 1 276 78 355 4.09e-148 418
Msa0287480 MtrunA17_Chr2g0291751 73.741 278 71 1 1 276 78 355 4.18e-146 413
Msa0287480 MtrunA17_Chr2g0292271 69.565 276 84 0 1 276 78 353 3.08e-134 383
Msa0287480 MtrunA17_Chr2g0292091 69.403 268 80 1 1 268 73 338 4.41e-134 382
Msa0287480 MtrunA17_Chr2g0292261 68.592 277 82 2 1 275 78 351 1.03e-130 374
Msa0287480 MtrunA17_Chr2g0292101 67.391 276 86 2 1 276 74 345 5.72e-129 369
Msa0287480 MtrunA17_Chr2g0292291 64.493 276 95 2 1 275 79 352 1.96e-124 358
Msa0287480 MtrunA17_Chr7g0258811 59.449 254 102 1 1 253 118 371 3.66e-103 305
Msa0287480 MtrunA17_Chr1g0175561 57.480 254 107 1 1 253 73 326 4.72e-100 295
Msa0287480 MtrunA17_Chr2g0292281 61.039 231 78 3 45 275 18 236 1.14e-93 276
Msa0287480 MtrunA17_Chr4g0070951 52.734 256 117 2 1 254 77 330 3.85e-85 258
Msa0287480 MtrunA17_Chr2g0299691 51.362 257 120 2 1 254 105 359 3.55e-84 256
Msa0287480 MtrunA17_Chr8g0372601 49.213 254 128 1 1 254 79 331 1.04e-82 251
Msa0287480 MtrunA17_Chr5g0402581 50.394 254 122 3 1 253 76 326 1.72e-82 251
Msa0287480 MtrunA17_Chr5g0404721 50.198 253 125 1 1 253 79 330 4.24e-82 250
Msa0287480 MtrunA17_Chr5g0402571 48.819 254 126 3 1 253 76 326 9.65e-80 244
Msa0287480 MtrunA17_Chr3g0129051 50.598 251 113 3 1 249 77 318 2.04e-75 233
Msa0287480 MtrunA17_Chr5g0438021 49.020 255 119 3 1 253 80 325 6.81e-75 231
Msa0287480 MtrunA17_Chr7g0244461 45.455 253 129 2 1 253 69 312 1.27e-73 228
Msa0287480 MtrunA17_Chr4g0013201 48.221 253 122 2 1 253 95 338 1.97e-73 228
Msa0287480 MtrunA17_Chr4g0013171 49.213 254 118 4 2 253 77 321 2.86e-73 227
Msa0287480 MtrunA17_Chr4g0013191 49.020 255 119 4 1 253 95 340 4.79e-73 227
Msa0287480 MtrunA17_Chr1g0155611 46.640 253 135 0 1 253 95 347 7.23e-73 227
Msa0287480 MtrunA17_Chr3g0106921 49.219 256 118 4 1 253 74 320 7.70e-73 226
Msa0287480 MtrunA17_Chr2g0320031 47.826 253 124 2 1 253 75 319 1.49e-72 225
Msa0287480 MtrunA17_Chr5g0432441 48.638 257 119 4 1 253 79 326 6.05e-72 224
Msa0287480 MtrunA17_Chr2g0320071 46.032 252 127 2 2 253 75 317 8.14e-72 223
Msa0287480 MtrunA17_Chr3g0129061 50.598 251 113 3 1 249 77 318 1.75e-71 222
Msa0287480 MtrunA17_Chr3g0114451 46.640 253 126 2 1 253 75 318 4.03e-71 221
Msa0287480 MtrunA17_Chr4g0068621 44.882 254 135 3 1 253 87 336 4.94e-71 222
Msa0287480 MtrunA17_Chr4g0013181 48.235 255 121 4 1 253 108 353 5.77e-71 222
Msa0287480 MtrunA17_Chr2g0320061 46.825 252 126 2 2 253 75 318 8.52e-71 221
Msa0287480 MtrunA17_Chr2g0320101 46.640 253 124 4 2 253 75 317 2.61e-70 219
Msa0287480 MtrunA17_Chr3g0129041 50.787 254 114 3 2 253 78 322 2.16e-69 217
Msa0287480 MtrunA17_Chr4g0038171 46.094 256 128 3 1 253 73 321 5.27e-69 216
Msa0287480 MtrunA17_Chr2g0320051 46.429 252 127 2 2 253 75 318 6.13e-69 216
Msa0287480 MtrunA17_Chr5g0432341 48.047 256 122 5 1 253 74 321 7.17e-69 216
Msa0287480 MtrunA17_Chr5g0421411 44.186 258 139 5 1 254 30 286 1.35e-68 214
Msa0287480 MtrunA17_Chr5g0432351 48.047 256 122 5 1 253 74 321 1.61e-68 215
Msa0287480 MtrunA17_Chr4g0043391 46.094 256 128 3 1 253 76 324 1.64e-68 215
Msa0287480 MtrunA17_Chr5g0400331 45.914 257 135 2 1 253 75 331 1.84e-68 215
Msa0287480 MtrunA17_Chr4g0038161 46.484 256 126 3 1 253 73 320 8.81e-68 213
Msa0287480 MtrunA17_Chr2g0320091 45.059 253 129 3 2 253 75 318 1.62e-67 212
Msa0287480 MtrunA17_Chr2g0322861 45.490 255 133 5 1 253 136 386 1.88e-67 214
Msa0287480 MtrunA17_Chr4g0013821 42.857 259 143 3 1 259 77 330 3.15e-67 212
Msa0287480 MtrunA17_Chr5g0432331 47.656 256 123 5 1 253 105 352 3.98e-67 212
Msa0287480 MtrunA17_Chr4g0038151 45.312 256 129 3 1 253 74 321 6.08e-67 211
Msa0287480 MtrunA17_Chr7g0244451 45.059 253 130 2 1 253 73 316 1.20e-66 210
Msa0287480 MtrunA17_Chr2g0279041 44.574 258 130 7 1 253 76 325 2.39e-66 209
Msa0287480 MtrunA17_Chr4g0024121 44.488 254 137 3 1 253 76 326 4.75e-66 209
Msa0287480 MtrunA17_Chr1g0213061 44.141 256 132 4 1 254 76 322 1.21e-65 207
Msa0287480 MtrunA17_Chr2g0279061 44.574 258 130 7 1 253 17 266 1.25e-65 206
Msa0287480 MtrunA17_Chr4g0013721 42.745 255 141 3 1 255 149 398 8.69e-65 208
Msa0287480 MtrunA17_Chr3g0106901 43.874 253 133 2 1 253 80 323 7.34e-63 200
Msa0287480 MtrunA17_Chr4g0076211 43.701 254 132 6 1 253 90 333 1.30e-62 200
Msa0287480 MtrunA17_Chr7g0268501 43.478 253 137 4 1 253 74 320 3.37e-62 199
Msa0287480 MtrunA17_Chr7g0268521 43.478 253 137 4 1 253 74 320 3.37e-62 199
Msa0287480 MtrunA17_Chr3g0128061 42.353 255 144 2 1 254 75 327 6.24e-62 198
Msa0287480 MtrunA17_Chr4g0063671 42.683 246 132 5 13 253 79 320 4.89e-61 196
Msa0287480 MtrunA17_Chr7g0224371 39.764 254 143 3 1 254 80 323 1.70e-60 194
Msa0287480 MtrunA17_Chr7g0225221 45.267 243 124 4 13 253 85 320 2.16e-60 194
Msa0287480 MtrunA17_Chr1g0148021 42.578 256 141 4 1 253 76 328 5.21e-60 193
Msa0287480 MtrunA17_Chr4g0046131 44.215 242 130 4 12 250 104 343 1.42e-59 192
Msa0287480 MtrunA17_Chr3g0107881 43.750 256 134 3 1 253 76 324 4.93e-59 191
Msa0287480 MtrunA17_Chr4g0072091 45.133 226 120 2 26 249 96 319 2.36e-58 189
Msa0287480 MtrunA17_Chr7g0254201 40.784 255 142 5 1 255 69 314 2.38e-58 188
Msa0287480 MtrunA17_Chr5g0405991 42.520 254 136 7 1 253 72 316 7.01e-58 187
Msa0287480 MtrunA17_Chr2g0296621 41.569 255 137 6 1 254 99 342 1.09e-57 187
Msa0287480 MtrunA17_Chr5g0401431 40.945 254 145 3 2 252 77 328 1.61e-57 187
Msa0287480 MtrunA17_Chr1g0164891 40.927 259 143 6 1 253 138 392 3.27e-56 185
Msa0287480 MtrunA17_Chr1g0204011 42.292 253 140 4 1 253 76 322 9.48e-56 182
Msa0287480 MtrunA17_Chr6g0467161 42.174 230 123 4 26 255 119 338 3.05e-54 179
Msa0287480 MtrunA17_Chr8g0371381 39.526 253 145 5 1 253 75 319 1.86e-53 176
Msa0287480 MtrunA17_Chr1g0194151 40.385 260 141 5 2 253 80 333 2.36e-53 176
Msa0287480 MtrunA17_Chr6g0467121 43.750 240 123 5 25 262 145 374 5.56e-53 177
Msa0287480 MtrunA17_Chr4g0053871 42.857 252 134 5 1 249 76 320 9.79e-53 174
Msa0287480 MtrunA17_Chr1g0194271 39.773 264 144 4 2 253 80 340 1.42e-52 174
Msa0287480 MtrunA17_Chr2g0278671 39.535 258 144 6 1 253 73 323 4.44e-52 172
Msa0287480 MtrunA17_Chr2g0329641 37.931 261 144 7 1 253 85 335 1.79e-51 171
Msa0287480 MtrunA17_Chr6g0451571 40.625 256 144 5 1 253 84 334 5.94e-51 170
Msa0287480 MtrunA17_Chr1g0197411 39.592 245 140 4 13 253 90 330 6.27e-51 170
Msa0287480 MtrunA17_Chr1g0188431 39.286 252 140 6 2 253 89 327 3.96e-50 167
Msa0287480 MtrunA17_Chr1g0157051 39.442 251 145 4 2 252 74 317 1.38e-49 166
Msa0287480 MtrunA17_Chr3g0114461 45.408 196 99 2 58 253 5 192 3.46e-49 161
Msa0287480 MtrunA17_Chr6g0467251 39.044 251 140 6 1 249 85 324 6.90e-49 165
Msa0287480 MtrunA17_Chr7g0254231 37.500 256 144 6 1 254 71 312 1.59e-48 163
Msa0287480 MtrunA17_Chr4g0075241 36.078 255 156 4 1 253 78 327 9.31e-48 161
Msa0287480 MtrunA17_Chr8g0364291 37.743 257 152 4 1 253 72 324 1.35e-47 161
Msa0287480 MtrunA17_Chr6g0460711 36.863 255 149 6 1 253 70 314 3.48e-47 160
Msa0287480 MtrunA17_Chr6g0477071 36.508 252 147 5 2 253 104 342 3.61e-47 160
Msa0287480 MtrunA17_Chr2g0311251 35.055 271 143 5 14 254 74 341 1.47e-45 156
Msa0287480 MtrunA17_Chr5g0413051 37.452 259 153 6 1 253 122 377 2.09e-45 157
Msa0287480 MtrunA17_Chr2g0316791 35.206 267 140 6 14 250 140 403 6.69e-45 156
Msa0287480 MtrunA17_Chr1g0181511 38.132 257 148 5 1 254 76 324 8.76e-45 154
Msa0287480 MtrunA17_Chr5g0432401 37.795 254 108 4 2 252 79 285 1.70e-44 152
Msa0287480 MtrunA17_Chr2g0316481 34.831 267 141 6 14 250 140 403 3.38e-44 154
Msa0287480 MtrunA17_Chr1g0181481 37.354 257 150 4 1 254 76 324 5.88e-44 151
Msa0287480 MtrunA17_Chr2g0316191 34.572 269 140 6 14 250 140 404 6.62e-44 153
Msa0287480 MtrunA17_Chr1g0181431 36.965 257 151 4 1 254 76 324 2.00e-43 150
Msa0287480 MtrunA17_Chr3g0136751 38.247 251 147 3 1 249 74 318 4.02e-43 149
Msa0287480 MtrunA17_Chr4g0074851 36.398 261 155 4 1 258 81 333 4.28e-43 149
Msa0287480 MtrunA17_Chr2g0316831 34.586 266 141 6 14 249 176 438 5.17e-43 152
Msa0287480 MtrunA17_Chr2g0311241 30.581 327 150 7 1 254 109 431 8.33e-38 138
Msa0287480 MtrunA17_Chr4g0004591 34.746 236 131 4 37 252 123 355 2.20e-37 135
Msa0287480 MtrunA17_Chr2g0316141 31.868 273 133 9 14 254 29 280 1.95e-32 120
Msa0287480 MtrunA17_Chr2g0316181 31.868 273 133 9 14 254 29 280 1.95e-32 120
Msa0287480 MtrunA17_Chr1g0181501 34.197 193 116 4 65 254 6 190 1.88e-27 105
Msa0287480 MtrunA17_Chr2g0316811 35.838 173 94 3 14 171 114 284 2.43e-26 105
Msa0287480 MtrunA17_Chr3g0104101 40.559 143 80 5 116 254 9 150 6.01e-25 97.4
Msa0287480 MtrunA17_Chr5g0432321 43.548 124 62 2 73 196 17 132 1.16e-24 95.9
Msa0287480 MtrunA17_Chr2g0316771 29.348 184 96 4 102 254 7 187 5.67e-21 87.8
Msa0287480 MtrunA17_Chr7g0254181 40.000 105 59 2 14 118 22 122 4.97e-18 79.0
Msa0287480 MtrunA17_Chr5g0432361 40.909 88 51 1 165 252 22 108 4.56e-16 72.4
Msa0287480 MtrunA17_Chr4g0013811 45.833 72 39 0 64 135 7 78 8.84e-15 68.2
Msa0287480 MtrunA17_Chr7g0268491 40.594 101 52 4 155 253 3 97 1.84e-13 65.1
Msa0287480 MtrunA17_Chr3g0124821 29.648 199 112 7 45 237 180 356 3.79e-13 68.9
Msa0287480 MtrunA17_Chr3g0114491 51.667 60 29 0 1 60 67 126 3.73e-12 62.4
Msa0287480 MtrunA17_Chr1g0196191 58.182 55 22 1 2 56 35 88 3.82e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287480 AT2G38380.1 56.318 277 113 3 1 276 80 349 7.42e-106 311
Msa0287480 AT2G38390.1 54.874 277 117 3 1 276 80 349 3.22e-104 307
Msa0287480 AT5G06730.1 56.250 256 112 0 1 256 82 337 1.34e-101 301
Msa0287480 AT5G06720.1 56.917 253 109 0 1 253 81 333 1.43e-101 300
Msa0287480 AT4G08770.1 54.745 274 122 2 1 272 73 346 1.61e-99 295
Msa0287480 AT3G32980.1 55.515 272 119 2 1 270 80 351 3.94e-98 292
Msa0287480 AT3G49120.1 55.515 272 119 2 1 270 81 352 4.16e-98 292
Msa0287480 AT3G49110.1 55.882 272 118 2 1 270 82 353 9.96e-97 288
Msa0287480 AT4G08780.1 52.555 274 128 2 1 272 73 346 4.73e-95 284
Msa0287480 AT5G19880.1 52.344 256 119 2 1 253 74 329 1.15e-89 270
Msa0287480 AT5G19890.1 51.765 255 115 4 1 253 79 327 9.29e-83 252
Msa0287480 AT2G18150.1 49.012 253 128 1 1 253 85 336 4.74e-81 248
Msa0287480 AT2G18140.1 49.012 253 128 1 1 253 84 335 2.34e-80 246
Msa0287480 AT5G66390.1 48.617 253 129 1 1 253 82 333 1.69e-79 244
Msa0287480 AT4G36430.1 48.425 254 130 1 1 254 79 331 1.69e-78 241
Msa0287480 AT5G05340.1 50.000 254 116 3 2 253 80 324 9.63e-78 239
Msa0287480 AT1G14550.1 49.213 254 121 3 1 253 75 321 1.66e-76 236
Msa0287480 AT1G44970.1 47.826 253 132 0 1 253 94 346 1.18e-74 232
Msa0287480 AT3G50990.1 46.640 253 134 1 1 253 90 341 2.44e-74 231
Msa0287480 AT1G49570.1 45.669 254 133 3 1 251 97 348 1.75e-71 224
Msa0287480 AT1G68850.1 45.174 259 136 5 1 254 79 336 1.33e-70 221
Msa0287480 AT4G16270.1 44.882 254 135 4 1 253 99 348 9.96e-70 219
Msa0287480 AT1G14540.1 46.245 253 129 2 1 253 70 315 9.62e-69 216
Msa0287480 AT5G58390.1 46.032 252 124 4 1 249 70 312 1.96e-68 215
Msa0287480 AT2G22420.1 42.205 263 147 3 1 263 72 329 3.74e-67 212
Msa0287480 AT5G58400.1 46.640 253 123 4 1 250 79 322 6.38e-67 211
Msa0287480 AT2G35380.1 45.914 257 135 3 1 253 79 335 6.60e-67 211
Msa0287480 AT2G35380.2 45.749 247 130 3 11 253 1 247 2.73e-65 204
Msa0287480 AT5G15180.1 41.797 256 139 5 1 253 81 329 1.90e-64 205
Msa0287480 AT1G71695.1 44.788 259 131 6 1 256 93 342 1.05e-62 201
Msa0287480 AT2G41480.1 44.355 248 125 6 13 253 87 328 1.96e-62 200
Msa0287480 AT4G30170.1 45.217 230 122 2 26 253 98 325 2.63e-62 199
Msa0287480 AT4G37530.1 43.750 256 139 3 1 253 76 329 3.94e-61 196
Msa0287480 AT2G18980.1 44.747 257 131 5 1 253 74 323 4.61e-61 196
Msa0287480 AT3G01190.1 41.502 253 142 5 1 253 75 321 9.48e-61 195
Msa0287480 AT1G05240.1 42.510 247 129 4 13 253 86 325 1.46e-60 195
Msa0287480 AT1G05250.1 42.510 247 129 4 13 253 86 325 1.46e-60 195
Msa0287480 AT1G05260.1 40.784 255 145 5 2 254 76 326 3.17e-60 194
Msa0287480 AT5G14130.1 43.913 230 122 3 26 253 106 330 8.82e-60 193
Msa0287480 AT5G14130.2 43.913 230 122 3 26 253 147 371 2.26e-59 193
Msa0287480 AT5G64120.1 42.913 254 135 6 1 253 84 328 2.35e-59 192
Msa0287480 AT3G21770.1 41.176 255 144 5 2 254 79 329 4.56e-59 191
Msa0287480 AT3G03670.1 40.625 256 143 4 1 253 72 321 5.45e-59 191
Msa0287480 AT5G67400.1 42.578 256 142 3 1 253 76 329 1.25e-58 190
Msa0287480 AT5G39580.1 43.701 254 134 6 1 253 74 319 3.86e-58 188
Msa0287480 AT5G17820.1 41.339 254 135 7 1 253 73 313 4.93e-58 188
Msa0287480 AT4G37520.1 41.406 256 145 3 1 253 76 329 3.30e-57 186
Msa0287480 AT4G25980.1 40.856 257 141 5 2 253 76 326 3.53e-57 186
Msa0287480 AT4G11290.1 39.453 256 149 5 1 253 74 326 4.02e-57 186
Msa0287480 AT5G17820.2 41.339 254 135 7 1 253 126 366 7.30e-57 186
Msa0287480 AT4G37520.2 41.016 256 143 4 1 253 76 326 8.88e-56 182
Msa0287480 AT5G64110.1 42.578 256 136 5 1 253 83 330 2.95e-55 181
Msa0287480 AT5G51890.1 41.406 256 139 6 1 253 75 322 8.67e-55 180
Msa0287480 AT5G24070.1 39.271 247 140 5 13 254 95 336 1.86e-54 179
Msa0287480 AT3G49960.1 39.844 256 149 3 1 253 76 329 4.17e-54 178
Msa0287480 AT2G43480.1 40.230 261 137 7 1 253 86 335 7.98e-54 178
Msa0287480 AT4G33870.1 34.843 287 145 5 1 250 117 398 6.18e-53 177
Msa0287480 AT4G37530.2 46.569 204 106 2 1 201 76 279 5.25e-52 171
Msa0287480 AT5G40150.1 40.625 256 141 5 1 253 81 328 9.61e-52 172
Msa0287480 AT2G34060.1 41.152 243 136 5 12 250 104 343 1.98e-51 172
Msa0287480 AT4G33420.1 40.316 253 138 6 1 253 86 325 4.07e-51 171
Msa0287480 AT5G64100.1 38.934 244 139 5 13 253 95 331 5.51e-51 170
Msa0287480 AT1G24110.1 40.234 256 146 5 1 253 71 322 6.91e-51 170
Msa0287480 AT4G33420.2 40.316 253 138 6 1 253 133 372 1.44e-50 170
Msa0287480 AT2G39040.1 40.769 260 143 6 1 253 95 350 4.49e-49 166
Msa0287480 AT5G42180.1 38.247 251 148 4 2 252 73 316 2.06e-48 163
Msa0287480 AT1G30870.1 37.165 261 147 7 1 256 100 348 9.24e-48 162
Msa0287480 AT4G17690.1 38.462 260 149 5 1 257 75 326 2.03e-47 161
Msa0287480 AT3G28200.1 37.500 256 148 5 1 253 70 316 2.67e-47 160
Msa0287480 AT1G77100.1 41.558 231 125 4 26 253 96 319 8.63e-47 159
Msa0287480 AT5G47000.1 36.923 260 154 5 1 257 82 334 4.57e-46 157
Msa0287480 AT4G31760.1 37.109 256 151 4 1 253 78 326 1.31e-45 156
Msa0287480 AT5G22410.1 36.220 254 148 7 1 249 77 321 8.46e-45 154
Msa0287480 AT4G26010.2 38.372 258 135 9 1 253 99 337 5.46e-44 152
Msa0287480 AT4G26010.1 38.372 258 135 9 1 253 71 309 5.48e-44 152
Msa0287480 AT2G24800.1 36.820 239 144 4 19 253 94 329 7.07e-42 147
Msa0287480 AT4G21960.1 35.547 256 154 4 1 253 80 327 2.00e-41 145
Msa0287480 AT2G37130.2 36.576 257 151 5 1 253 48 296 1.43e-40 142
Msa0287480 AT2G37130.1 36.576 257 151 5 1 253 79 327 2.30e-40 142
Msa0287480 AT1G34510.1 36.220 254 146 6 1 253 71 309 9.75e-40 140
Msa0287480 AT3G17070.2 36.260 262 149 9 1 253 24 276 4.30e-38 135
Msa0287480 AT3G17070.1 36.260 262 149 9 1 253 87 339 8.99e-38 136
Msa0287480 AT4G25980.2 43.333 120 64 3 2 121 121 236 6.77e-24 98.2
Msa0287480 AT5G39580.2 44.961 129 66 3 1 129 74 197 8.61e-23 94.4
Msa0287480 AT2G24800.2 38.835 103 63 0 19 121 94 196 6.87e-15 72.8
Msa0287480 AT4G08390.3 28.767 219 122 9 27 237 169 361 1.04e-13 70.9
Msa0287480 AT4G08390.2 28.767 219 122 9 27 237 170 362 1.13e-13 70.9
Msa0287480 AT4G08390.5 28.767 219 122 9 27 237 170 362 1.13e-13 70.9
Msa0287480 AT4G08390.1 28.767 219 122 9 27 237 170 362 1.13e-13 70.9
Msa0287480 AT1G77490.2 28.251 223 127 7 20 236 145 340 1.35e-13 70.9
Msa0287480 AT1G77490.1 28.251 223 127 7 20 236 145 340 1.88e-13 70.1
Msa0287480 AT3G42570.1 33.929 112 72 2 9 119 39 149 2.83e-13 66.2

Find 71 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTAGAGAGTTGATATT+TGG 0.106972 2_3:+30454107 None:intergenic
TCAAAATTGGCTAGGTTATT+TGG 0.131049 2_3:+30453491 None:intergenic
AGTCATAACATCTTTATTTA+TGG 0.145264 2_3:+30453109 None:intergenic
CTCCAATCTTCAGGGTAAAA+AGG 0.165515 2_3:-30453432 Msa0287480:CDS
TGAAGCCGCAATGATTAAAA+TGG 0.207698 2_3:-30453306 Msa0287480:CDS
TGCACAAATTTCCTCAATAT+TGG 0.230077 2_3:-30454000 Msa0287480:intron
TTGTATTTGAAGTATTTCTT+TGG 0.243189 2_3:-30453029 Msa0287480:three_prime_UTR
TAGCTCAATTTAAGTACATT+AGG 0.246177 2_3:-30453162 Msa0287480:exon
CCTAAGGGAACCTTCCAATT+AGG 0.299457 2_3:+30453883 None:intergenic
GAACTACTACTCCAATCTTC+AGG 0.316728 2_3:-30453441 Msa0287480:CDS
TTATTTGGTGGTCCGCCATT+AGG 0.325085 2_3:+30453506 None:intergenic
TATTTGGTGGTCCGCCATTA+GGG 0.328859 2_3:+30453507 None:intergenic
TGTATTTGAAGTATTTCTTT+GGG 0.329363 2_3:-30453028 Msa0287480:three_prime_UTR
GACAGGCAGATGGTCCTAAT+TGG 0.340600 2_3:-30453897 Msa0287480:intron
TAGTTCTTGTCAAATTTATC+AGG 0.341189 2_3:+30453458 None:intergenic
AGGAGTCGTTGGGTCAAAAT+TGG 0.352540 2_3:+30453478 None:intergenic
CTCTTAGAGAGTTGATATTT+GGG 0.358470 2_3:+30454108 None:intergenic
ATGATTAAAATGGGTAATAT+TGG 0.359326 2_3:-30453296 Msa0287480:CDS
AGCTCAATTTAAGTACATTA+GGG 0.369762 2_3:-30453161 Msa0287480:exon
CCAAATATCAACTCTCTAAG+AGG 0.384268 2_3:-30454107 Msa0287480:CDS
TATCAACTCTCTAAGAGGTT+TGG 0.404456 2_3:-30454102 Msa0287480:CDS
TCCGGCTCCATTCAATTCGT+TGG 0.412887 2_3:-30453812 Msa0287480:CDS
GCTCGCTAATCAAAATCTTC+CGG 0.413502 2_3:-30453830 Msa0287480:CDS
AGTTGATCCAACGAATTGAA+TGG 0.422071 2_3:+30453805 None:intergenic
AAATAAGTTGTGTTAAGAGT+TGG 0.446017 2_3:+30453551 None:intergenic
TAAACCATCCCTTCTTCCTA+AGG 0.452261 2_3:+30453867 None:intergenic
TGAGGAAATTTGTGCAGAAA+GGG 0.454531 2_3:+30454007 None:intergenic
CTAGCTTGAAATGTAGTGAT+TGG 0.460476 2_3:-30453135 Msa0287480:three_prime_UTR
TTACGCAAAATATGCCCTAA+TGG 0.460673 2_3:-30453521 Msa0287480:CDS
AATTCAAAATCAGTTGAACT+TGG 0.466976 2_3:-30453224 Msa0287480:CDS
TTGAGGAAATTTGTGCAGAA+AGG 0.469850 2_3:+30454006 None:intergenic
GAAGCCGCAATGATTAAAAT+GGG 0.473046 2_3:-30453305 Msa0287480:CDS
GAACTTGTTGACAATGCTAA+TGG 0.473631 2_3:+30453361 None:intergenic
TCAGCACAAGAAACTGTGTT+AGG 0.474603 2_3:+30454038 None:intergenic
TTCCACAGATTCATCGGGTA+TGG 0.479176 2_3:-30453186 Msa0287480:CDS
GGAAGGTTCCCTTAGGAAGA+AGG 0.481031 2_3:-30453876 Msa0287480:CDS
TCAAATTTATCAGGAGTCGT+TGG 0.486420 2_3:+30453467 None:intergenic
TTGATTAGCGAGCGATTGGT+TGG 0.493017 2_3:+30453840 None:intergenic
GGTAATATTGGTGTGCTGAC+CGG 0.495092 2_3:-30453284 Msa0287480:CDS
GTTGTGTTAAGAGTTGGATC+AGG 0.495573 2_3:+30453557 None:intergenic
AACTACTACTCCAATCTTCA+GGG 0.496833 2_3:-30453440 Msa0287480:CDS
CAAATTTATCAGGAGTCGTT+GGG 0.501770 2_3:+30453468 None:intergenic
AATGTAGGTGCACATACATT+CGG 0.502427 2_3:-30453638 Msa0287480:intron
ACTGATCTAGTTGCTCTCTC+AGG 0.506595 2_3:-30453748 Msa0287480:intron
CCTAATTGGAAGGTTCCCTT+AGG 0.512222 2_3:-30453883 Msa0287480:CDS
ATTAGCGAGCGATTGGTTGG+CGG 0.513279 2_3:+30453843 None:intergenic
AAATCTGCATTTGCTGCTCA+AGG 0.516203 2_3:-30453781 Msa0287480:CDS
TGTGGCTTCCACAGATTCAT+CGG 0.516272 2_3:-30453192 Msa0287480:CDS
TTATACAACTTCAGCAGTAC+AGG 0.516560 2_3:-30453584 Msa0287480:CDS
GTAATATTGGTGTGCTGACC+GGG 0.523801 2_3:-30453283 Msa0287480:CDS
AAATTGGCTAGGTTATTTGG+TGG 0.548775 2_3:+30453494 None:intergenic
GTGGCTTCCACAGATTCATC+GGG 0.558019 2_3:-30453191 Msa0287480:CDS
ACATGTGTCACATAGTTACT+AGG 0.559379 2_3:-30453073 Msa0287480:three_prime_UTR
TCCAACGAATTGAATGGAGC+CGG 0.561618 2_3:+30453811 None:intergenic
ATGAGGCATTACCAATATTG+AGG 0.564329 2_3:+30453989 None:intergenic
CAGATGTTGAGAAAAGCTCT+TGG 0.566213 2_3:+30453393 None:intergenic
TAGTTACTAGGTGCTTTGTG+AGG 0.577274 2_3:-30453061 Msa0287480:three_prime_UTR
GAAGGTTCCCTTAGGAAGAA+GGG 0.585149 2_3:-30453875 Msa0287480:CDS
AGTTACTAGGTGCTTTGTGA+GGG 0.587364 2_3:-30453060 Msa0287480:three_prime_UTR
AAACCATCCCTTCTTCCTAA+GGG 0.593389 2_3:+30453868 None:intergenic
TCGTTGGGTCAAAATTGGCT+AGG 0.595086 2_3:+30453483 None:intergenic
TGAACTTGGTCTAGTGAATG+TGG 0.599379 2_3:-30453210 Msa0287480:CDS
GGCAGATGGTCCTAATTGGA+AGG 0.605173 2_3:-30453893 Msa0287480:CDS
AACCATACCCGATGAATCTG+TGG 0.607568 2_3:+30453184 None:intergenic
AGCATCTTGTTCACTCACAA+TGG 0.609683 2_3:+30454133 None:intergenic
GTTCCCTTAGGAAGAAGGGA+TGG 0.614528 2_3:-30453871 Msa0287480:CDS
AAACCGAATTAAAACAGCAG+TGG 0.636785 2_3:-30454072 Msa0287480:CDS
TGTATGTATTGACAGGCAGA+TGG 0.639188 2_3:-30453907 Msa0287480:intron
CGCAAAATATGCCCTAATGG+CGG 0.644342 2_3:-30453518 Msa0287480:CDS
TAAATAAAGATGTTATGACT+AGG 0.656221 2_3:-30453106 Msa0287480:three_prime_UTR
CAACTAGATCAGTAGTACTG+AGG 0.672059 2_3:+30453758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGCAATTTTTTCTAATTAAA+AGG - chr2_3:30453409-30453428 Msa0287480:CDS 15.0%
!!! GCAATTTTTTCTAATTAAAA+GGG - chr2_3:30453410-30453429 Msa0287480:CDS 15.0%
!! GTATATAACAACAAATTATA+AGG - chr2_3:30453454-30453473 Msa0287480:CDS 15.0%
!!! TGCAATTTTTTCTAATTAAA+AGG - chr2_3:30453409-30453428 Msa0287480:CDS 15.0%
!!! GCAATTTTTTCTAATTAAAA+GGG - chr2_3:30453410-30453429 Msa0287480:CDS 15.0%
!! GTATATAACAACAAATTATA+AGG - chr2_3:30453454-30453473 Msa0287480:CDS 15.0%
!!! TAGTTGTTATTAATCATGTT+AGG + chr2_3:30453169-30453188 None:intergenic 20.0%
!! AATATATATGCTTCAAATGT+AGG - chr2_3:30453479-30453498 Msa0287480:CDS 20.0%
!! ATGATTAAAATGGGTAATAT+TGG - chr2_3:30453836-30453855 Msa0287480:CDS 20.0%
!!! AGTCATAACATCTTTATTTA+TGG + chr2_3:30454026-30454045 None:intergenic 20.0%
!! TAAATAAAGATGTTATGACT+AGG - chr2_3:30454026-30454045 Msa0287480:CDS 20.0%
!!! TTGTATTTGAAGTATTTCTT+TGG - chr2_3:30454103-30454122 Msa0287480:CDS 20.0%
!!! TGTATTTGAAGTATTTCTTT+GGG - chr2_3:30454104-30454123 Msa0287480:CDS 20.0%
!!! CAATTTTCTCTATCTTATTT+TGG - chr2_3:30454140-30454159 Msa0287480:CDS 20.0%
!!! TAGTTGTTATTAATCATGTT+AGG + chr2_3:30453169-30453188 None:intergenic 20.0%
!! AATATATATGCTTCAAATGT+AGG - chr2_3:30453479-30453498 Msa0287480:CDS 20.0%
!! ATGATTAAAATGGGTAATAT+TGG - chr2_3:30453836-30453855 Msa0287480:CDS 20.0%
!!! AGTCATAACATCTTTATTTA+TGG + chr2_3:30454026-30454045 None:intergenic 20.0%
!! TAAATAAAGATGTTATGACT+AGG - chr2_3:30454026-30454045 Msa0287480:CDS 20.0%
!!! TTGTATTTGAAGTATTTCTT+TGG - chr2_3:30454103-30454122 Msa0287480:CDS 20.0%
!!! TGTATTTGAAGTATTTCTTT+GGG - chr2_3:30454104-30454123 Msa0287480:CDS 20.0%
!!! CAATTTTCTCTATCTTATTT+TGG - chr2_3:30454140-30454159 Msa0287480:CDS 20.0%
! TTATTAATCATGTTAGGATG+AGG + chr2_3:30453163-30453182 None:intergenic 25.0%
!! TAATACATGTATGTATTGAC+AGG - chr2_3:30453218-30453237 Msa0287480:CDS 25.0%
! AAATAAGTTGTGTTAAGAGT+TGG + chr2_3:30453584-30453603 None:intergenic 25.0%
! TAGTTCTTGTCAAATTTATC+AGG + chr2_3:30453677-30453696 None:intergenic 25.0%
!!! ATTACCCATTTTAATCATTG+CGG + chr2_3:30453834-30453853 None:intergenic 25.0%
! AATTCAAAATCAGTTGAACT+TGG - chr2_3:30453908-30453927 Msa0287480:intron 25.0%
! TAGCTCAATTTAAGTACATT+AGG - chr2_3:30453970-30453989 Msa0287480:intron 25.0%
! AGCTCAATTTAAGTACATTA+GGG - chr2_3:30453971-30453990 Msa0287480:intron 25.0%
!!! ATCTTATTTTGGACTTGTTT+TGG - chr2_3:30454151-30454170 Msa0287480:CDS 25.0%
! TTATTAATCATGTTAGGATG+AGG + chr2_3:30453163-30453182 None:intergenic 25.0%
!! TAATACATGTATGTATTGAC+AGG - chr2_3:30453218-30453237 Msa0287480:CDS 25.0%
! AAATAAGTTGTGTTAAGAGT+TGG + chr2_3:30453584-30453603 None:intergenic 25.0%
! TAGTTCTTGTCAAATTTATC+AGG + chr2_3:30453677-30453696 None:intergenic 25.0%
!!! ATTACCCATTTTAATCATTG+CGG + chr2_3:30453834-30453853 None:intergenic 25.0%
! AATTCAAAATCAGTTGAACT+TGG - chr2_3:30453908-30453927 Msa0287480:intron 25.0%
! TAGCTCAATTTAAGTACATT+AGG - chr2_3:30453970-30453989 Msa0287480:intron 25.0%
! AGCTCAATTTAAGTACATTA+GGG - chr2_3:30453971-30453990 Msa0287480:intron 25.0%
!!! ATCTTATTTTGGACTTGTTT+TGG - chr2_3:30454151-30454170 Msa0287480:CDS 25.0%
!! CTCTTAGAGAGTTGATATTT+GGG + chr2_3:30453027-30453046 None:intergenic 30.0%
!!! TTTCCACTGCTGTTTTAATT+CGG + chr2_3:30453066-30453085 None:intergenic 30.0%
TGCACAAATTTCCTCAATAT+TGG - chr2_3:30453132-30453151 Msa0287480:three_prime_UTR 30.0%
TCAAAATTGGCTAGGTTATT+TGG + chr2_3:30453644-30453663 None:intergenic 30.0%
!! CTCTTAGAGAGTTGATATTT+GGG + chr2_3:30453027-30453046 None:intergenic 30.0%
!!! TTTCCACTGCTGTTTTAATT+CGG + chr2_3:30453066-30453085 None:intergenic 30.0%
TGCACAAATTTCCTCAATAT+TGG - chr2_3:30453132-30453151 Msa0287480:three_prime_UTR 30.0%
TCAAAATTGGCTAGGTTATT+TGG + chr2_3:30453644-30453663 None:intergenic 30.0%
!! CCTCTTAGAGAGTTGATATT+TGG + chr2_3:30453028-30453047 None:intergenic 35.0%
CCAAATATCAACTCTCTAAG+AGG - chr2_3:30453025-30453044 Msa0287480:three_prime_UTR 35.0%
! TATCAACTCTCTAAGAGGTT+TGG - chr2_3:30453030-30453049 Msa0287480:three_prime_UTR 35.0%
AAACCGAATTAAAACAGCAG+TGG - chr2_3:30453060-30453079 Msa0287480:three_prime_UTR 35.0%
TGAGGAAATTTGTGCAGAAA+GGG + chr2_3:30453128-30453147 None:intergenic 35.0%
TTGAGGAAATTTGTGCAGAA+AGG + chr2_3:30453129-30453148 None:intergenic 35.0%
! ATGAGGCATTACCAATATTG+AGG + chr2_3:30453146-30453165 None:intergenic 35.0%
AGTTGATCCAACGAATTGAA+TGG + chr2_3:30453330-30453349 None:intergenic 35.0%
AATGTAGGTGCACATACATT+CGG - chr2_3:30453494-30453513 Msa0287480:CDS 35.0%
TTATACAACTTCAGCAGTAC+AGG - chr2_3:30453548-30453567 Msa0287480:CDS 35.0%
TTACGCAAAATATGCCCTAA+TGG - chr2_3:30453611-30453630 Msa0287480:CDS 35.0%
AAATTGGCTAGGTTATTTGG+TGG + chr2_3:30453641-30453660 None:intergenic 35.0%
CAAATTTATCAGGAGTCGTT+GGG + chr2_3:30453667-30453686 None:intergenic 35.0%
TCAAATTTATCAGGAGTCGT+TGG + chr2_3:30453668-30453687 None:intergenic 35.0%
AACTACTACTCCAATCTTCA+GGG - chr2_3:30453692-30453711 Msa0287480:intron 35.0%
TCCAATCTTCAGGGTAAAAA+GGG - chr2_3:30453701-30453720 Msa0287480:intron 35.0%
!! GAACTTGTTGACAATGCTAA+TGG + chr2_3:30453774-30453793 None:intergenic 35.0%
TGAAGCCGCAATGATTAAAA+TGG - chr2_3:30453826-30453845 Msa0287480:CDS 35.0%
GAAGCCGCAATGATTAAAAT+GGG - chr2_3:30453827-30453846 Msa0287480:CDS 35.0%
!!! TCTAATCTCTCCTTTTTTCC+CGG + chr2_3:30453870-30453889 None:intergenic 35.0%
CTAGCTTGAAATGTAGTGAT+TGG - chr2_3:30453997-30454016 Msa0287480:intron 35.0%
ACATGTGTCACATAGTTACT+AGG - chr2_3:30454059-30454078 Msa0287480:CDS 35.0%
!! CCTCTTAGAGAGTTGATATT+TGG + chr2_3:30453028-30453047 None:intergenic 35.0%
CCAAATATCAACTCTCTAAG+AGG - chr2_3:30453025-30453044 Msa0287480:three_prime_UTR 35.0%
! TATCAACTCTCTAAGAGGTT+TGG - chr2_3:30453030-30453049 Msa0287480:three_prime_UTR 35.0%
AAACCGAATTAAAACAGCAG+TGG - chr2_3:30453060-30453079 Msa0287480:three_prime_UTR 35.0%
TGAGGAAATTTGTGCAGAAA+GGG + chr2_3:30453128-30453147 None:intergenic 35.0%
TTGAGGAAATTTGTGCAGAA+AGG + chr2_3:30453129-30453148 None:intergenic 35.0%
! ATGAGGCATTACCAATATTG+AGG + chr2_3:30453146-30453165 None:intergenic 35.0%
AGTTGATCCAACGAATTGAA+TGG + chr2_3:30453330-30453349 None:intergenic 35.0%
AATGTAGGTGCACATACATT+CGG - chr2_3:30453494-30453513 Msa0287480:CDS 35.0%
TTATACAACTTCAGCAGTAC+AGG - chr2_3:30453548-30453567 Msa0287480:CDS 35.0%
TTACGCAAAATATGCCCTAA+TGG - chr2_3:30453611-30453630 Msa0287480:CDS 35.0%
AAATTGGCTAGGTTATTTGG+TGG + chr2_3:30453641-30453660 None:intergenic 35.0%
CAAATTTATCAGGAGTCGTT+GGG + chr2_3:30453667-30453686 None:intergenic 35.0%
TCAAATTTATCAGGAGTCGT+TGG + chr2_3:30453668-30453687 None:intergenic 35.0%
AACTACTACTCCAATCTTCA+GGG - chr2_3:30453692-30453711 Msa0287480:intron 35.0%
TCCAATCTTCAGGGTAAAAA+GGG - chr2_3:30453701-30453720 Msa0287480:intron 35.0%
!! GAACTTGTTGACAATGCTAA+TGG + chr2_3:30453774-30453793 None:intergenic 35.0%
TGAAGCCGCAATGATTAAAA+TGG - chr2_3:30453826-30453845 Msa0287480:CDS 35.0%
GAAGCCGCAATGATTAAAAT+GGG - chr2_3:30453827-30453846 Msa0287480:CDS 35.0%
!!! TCTAATCTCTCCTTTTTTCC+CGG + chr2_3:30453870-30453889 None:intergenic 35.0%
CTAGCTTGAAATGTAGTGAT+TGG - chr2_3:30453997-30454016 Msa0287480:intron 35.0%
ACATGTGTCACATAGTTACT+AGG - chr2_3:30454059-30454078 Msa0287480:CDS 35.0%
AGCATCTTGTTCACTCACAA+TGG + chr2_3:30453002-30453021 None:intergenic 40.0%
TCAGCACAAGAAACTGTGTT+AGG + chr2_3:30453097-30453116 None:intergenic 40.0%
! TGTATGTATTGACAGGCAGA+TGG - chr2_3:30453225-30453244 Msa0287480:CDS 40.0%
AAACCATCCCTTCTTCCTAA+GGG + chr2_3:30453267-30453286 None:intergenic 40.0%
TAAACCATCCCTTCTTCCTA+AGG + chr2_3:30453268-30453287 None:intergenic 40.0%
!!! GATTTTGATTAGCGAGCGAT+TGG + chr2_3:30453299-30453318 None:intergenic 40.0%
GCTCGCTAATCAAAATCTTC+CGG - chr2_3:30453302-30453321 Msa0287480:CDS 40.0%
! AAATCTGCATTTGCTGCTCA+AGG - chr2_3:30453351-30453370 Msa0287480:CDS 40.0%
CAACTAGATCAGTAGTACTG+AGG + chr2_3:30453377-30453396 None:intergenic 40.0%
GTTGTGTTAAGAGTTGGATC+AGG + chr2_3:30453578-30453597 None:intergenic 40.0%
GAACTACTACTCCAATCTTC+AGG - chr2_3:30453691-30453710 Msa0287480:intron 40.0%
CTCCAATCTTCAGGGTAAAA+AGG - chr2_3:30453700-30453719 Msa0287480:intron 40.0%
! ACCCTTTTTACCCTGAAGAT+TGG + chr2_3:30453705-30453724 None:intergenic 40.0%
CAGATGTTGAGAAAAGCTCT+TGG + chr2_3:30453742-30453761 None:intergenic 40.0%
! CAAGAGCTTTTCTCAACATC+TGG - chr2_3:30453740-30453759 Msa0287480:intron 40.0%
TGAACTTGGTCTAGTGAATG+TGG - chr2_3:30453922-30453941 Msa0287480:intron 40.0%
TAGTTACTAGGTGCTTTGTG+AGG - chr2_3:30454071-30454090 Msa0287480:CDS 40.0%
AGTTACTAGGTGCTTTGTGA+GGG - chr2_3:30454072-30454091 Msa0287480:CDS 40.0%
AGCATCTTGTTCACTCACAA+TGG + chr2_3:30453002-30453021 None:intergenic 40.0%
TCAGCACAAGAAACTGTGTT+AGG + chr2_3:30453097-30453116 None:intergenic 40.0%
! TGTATGTATTGACAGGCAGA+TGG - chr2_3:30453225-30453244 Msa0287480:CDS 40.0%
AAACCATCCCTTCTTCCTAA+GGG + chr2_3:30453267-30453286 None:intergenic 40.0%
TAAACCATCCCTTCTTCCTA+AGG + chr2_3:30453268-30453287 None:intergenic 40.0%
!!! GATTTTGATTAGCGAGCGAT+TGG + chr2_3:30453299-30453318 None:intergenic 40.0%
GCTCGCTAATCAAAATCTTC+CGG - chr2_3:30453302-30453321 Msa0287480:CDS 40.0%
! AAATCTGCATTTGCTGCTCA+AGG - chr2_3:30453351-30453370 Msa0287480:CDS 40.0%
CAACTAGATCAGTAGTACTG+AGG + chr2_3:30453377-30453396 None:intergenic 40.0%
GTTGTGTTAAGAGTTGGATC+AGG + chr2_3:30453578-30453597 None:intergenic 40.0%
GAACTACTACTCCAATCTTC+AGG - chr2_3:30453691-30453710 Msa0287480:intron 40.0%
CTCCAATCTTCAGGGTAAAA+AGG - chr2_3:30453700-30453719 Msa0287480:intron 40.0%
! ACCCTTTTTACCCTGAAGAT+TGG + chr2_3:30453705-30453724 None:intergenic 40.0%
CAGATGTTGAGAAAAGCTCT+TGG + chr2_3:30453742-30453761 None:intergenic 40.0%
! CAAGAGCTTTTCTCAACATC+TGG - chr2_3:30453740-30453759 Msa0287480:intron 40.0%
TGAACTTGGTCTAGTGAATG+TGG - chr2_3:30453922-30453941 Msa0287480:intron 40.0%
TAGTTACTAGGTGCTTTGTG+AGG - chr2_3:30454071-30454090 Msa0287480:CDS 40.0%
AGTTACTAGGTGCTTTGTGA+GGG - chr2_3:30454072-30454091 Msa0287480:CDS 40.0%
CCTAAGGGAACCTTCCAATT+AGG + chr2_3:30453252-30453271 None:intergenic 45.0%
CCTAATTGGAAGGTTCCCTT+AGG - chr2_3:30453249-30453268 Msa0287480:CDS 45.0%
GAAGGTTCCCTTAGGAAGAA+GGG - chr2_3:30453257-30453276 Msa0287480:CDS 45.0%
TTGATTAGCGAGCGATTGGT+TGG + chr2_3:30453295-30453314 None:intergenic 45.0%
TCCAACGAATTGAATGGAGC+CGG + chr2_3:30453324-30453343 None:intergenic 45.0%
ACTGATCTAGTTGCTCTCTC+AGG - chr2_3:30453384-30453403 Msa0287480:CDS 45.0%
CGCAAAATATGCCCTAATGG+CGG - chr2_3:30453614-30453633 Msa0287480:CDS 45.0%
! TATTTGGTGGTCCGCCATTA+GGG + chr2_3:30453628-30453647 None:intergenic 45.0%
! TTATTTGGTGGTCCGCCATT+AGG + chr2_3:30453629-30453648 None:intergenic 45.0%
TCGTTGGGTCAAAATTGGCT+AGG + chr2_3:30453652-30453671 None:intergenic 45.0%
AGGAGTCGTTGGGTCAAAAT+TGG + chr2_3:30453657-30453676 None:intergenic 45.0%
! GGTAATATTGGTGTGCTGAC+CGG - chr2_3:30453848-30453867 Msa0287480:CDS 45.0%
! GTAATATTGGTGTGCTGACC+GGG - chr2_3:30453849-30453868 Msa0287480:CDS 45.0%
TGTGGCTTCCACAGATTCAT+CGG - chr2_3:30453940-30453959 Msa0287480:intron 45.0%
TTCCACAGATTCATCGGGTA+TGG - chr2_3:30453946-30453965 Msa0287480:intron 45.0%
AACCATACCCGATGAATCTG+TGG + chr2_3:30453951-30453970 None:intergenic 45.0%
CCTAAGGGAACCTTCCAATT+AGG + chr2_3:30453252-30453271 None:intergenic 45.0%
CCTAATTGGAAGGTTCCCTT+AGG - chr2_3:30453249-30453268 Msa0287480:CDS 45.0%
GAAGGTTCCCTTAGGAAGAA+GGG - chr2_3:30453257-30453276 Msa0287480:CDS 45.0%
TTGATTAGCGAGCGATTGGT+TGG + chr2_3:30453295-30453314 None:intergenic 45.0%
TCCAACGAATTGAATGGAGC+CGG + chr2_3:30453324-30453343 None:intergenic 45.0%
ACTGATCTAGTTGCTCTCTC+AGG - chr2_3:30453384-30453403 Msa0287480:CDS 45.0%
CGCAAAATATGCCCTAATGG+CGG - chr2_3:30453614-30453633 Msa0287480:CDS 45.0%
! TATTTGGTGGTCCGCCATTA+GGG + chr2_3:30453628-30453647 None:intergenic 45.0%
! TTATTTGGTGGTCCGCCATT+AGG + chr2_3:30453629-30453648 None:intergenic 45.0%
TCGTTGGGTCAAAATTGGCT+AGG + chr2_3:30453652-30453671 None:intergenic 45.0%
AGGAGTCGTTGGGTCAAAAT+TGG + chr2_3:30453657-30453676 None:intergenic 45.0%
! GGTAATATTGGTGTGCTGAC+CGG - chr2_3:30453848-30453867 Msa0287480:CDS 45.0%
! GTAATATTGGTGTGCTGACC+GGG - chr2_3:30453849-30453868 Msa0287480:CDS 45.0%
TGTGGCTTCCACAGATTCAT+CGG - chr2_3:30453940-30453959 Msa0287480:intron 45.0%
TTCCACAGATTCATCGGGTA+TGG - chr2_3:30453946-30453965 Msa0287480:intron 45.0%
AACCATACCCGATGAATCTG+TGG + chr2_3:30453951-30453970 None:intergenic 45.0%
GACAGGCAGATGGTCCTAAT+TGG - chr2_3:30453235-30453254 Msa0287480:CDS 50.0%
GGCAGATGGTCCTAATTGGA+AGG - chr2_3:30453239-30453258 Msa0287480:CDS 50.0%
GGAAGGTTCCCTTAGGAAGA+AGG - chr2_3:30453256-30453275 Msa0287480:CDS 50.0%
GTTCCCTTAGGAAGAAGGGA+TGG - chr2_3:30453261-30453280 Msa0287480:CDS 50.0%
! ATTAGCGAGCGATTGGTTGG+CGG + chr2_3:30453292-30453311 None:intergenic 50.0%
TCCGGCTCCATTCAATTCGT+TGG - chr2_3:30453320-30453339 Msa0287480:CDS 50.0%
GTGGCTTCCACAGATTCATC+GGG - chr2_3:30453941-30453960 Msa0287480:intron 50.0%
GACAGGCAGATGGTCCTAAT+TGG - chr2_3:30453235-30453254 Msa0287480:CDS 50.0%
GGCAGATGGTCCTAATTGGA+AGG - chr2_3:30453239-30453258 Msa0287480:CDS 50.0%
GGAAGGTTCCCTTAGGAAGA+AGG - chr2_3:30453256-30453275 Msa0287480:CDS 50.0%
GTTCCCTTAGGAAGAAGGGA+TGG - chr2_3:30453261-30453280 Msa0287480:CDS 50.0%
! ATTAGCGAGCGATTGGTTGG+CGG + chr2_3:30453292-30453311 None:intergenic 50.0%
TCCGGCTCCATTCAATTCGT+TGG - chr2_3:30453320-30453339 Msa0287480:CDS 50.0%
GTGGCTTCCACAGATTCATC+GGG - chr2_3:30453941-30453960 Msa0287480:intron 50.0%
! GGTGTGCTGACCGGGAAAAA+AGG - chr2_3:30453857-30453876 Msa0287480:CDS 55.0%
! GGTGTGCTGACCGGGAAAAA+AGG - chr2_3:30453857-30453876 Msa0287480:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 30452971 30454183 30452971 ID=Msa0287480;Name=Msa0287480
chr2_3 mRNA 30452971 30454183 30452971 ID=Msa0287480-mRNA-1;Parent=Msa0287480;Name=Msa0287480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.66|1|1|1|3|201|276
chr2_3 exon 30452971 30453653 30452971 ID=Msa0287480-mRNA-1:exon:10449;Parent=Msa0287480-mRNA-1
chr2_3 exon 30453749 30453914 30453749 ID=Msa0287480-mRNA-1:exon:10448;Parent=Msa0287480-mRNA-1
chr2_3 exon 30454001 30454183 30454001 ID=Msa0287480-mRNA-1:exon:10447;Parent=Msa0287480-mRNA-1
chr2_3 CDS 30454001 30454183 30454001 ID=Msa0287480-mRNA-1:cds;Parent=Msa0287480-mRNA-1
chr2_3 CDS 30453749 30453914 30453749 ID=Msa0287480-mRNA-1:cds;Parent=Msa0287480-mRNA-1
chr2_3 CDS 30453172 30453653 30453172 ID=Msa0287480-mRNA-1:cds;Parent=Msa0287480-mRNA-1
chr2_3 three_prime_UTR 30452971 30453171 30452971 ID=Msa0287480-mRNA-1:three_prime_utr;Parent=Msa0287480-mRNA-1
Gene Sequence

>Msa0287480

GCATCAGTTTTACTGAACAAAACTGATACCATTGTGAGTGAACAAGATGCTTTCCCAAATATCAACTCTCTAAGAGGTTTGGATGTTGTAAACCGAATTAAAACAGCAGTGGAAAATGCTTGTCCTAACACAGTTTCTTGTGCTGATATTCTTGCCCTTTCTGCACAAATTTCCTCAATATTGGCAGATGGTCCTAATTGGAAGGTTCCCTTAGGAAGAAGGGATGGTTTAACCGCCAACCAATCGCTCGCTAATCAAAATCTTCCGGCTCCATTCAATTCGTTGGATCAACTTAAATCTGCATTTGCTGCTCAAGGCCTCAGTACTACTGATCTAGTTGCTCTCTCAGGTGCACATACATTCGGAAGAGCACGTTGCACTTTCATCACTGATCGATTATACAACTTCAGCAGTACAGGAAAACCTGATCCAACTCTTAACACAACTTATTTACAAGAATTACGCAAAATATGCCCTAATGGCGGACCACCAAATAACCTAGCCAATTTTGACCCAACGACTCCTGATAAATTTGACAAGAACTACTACTCCAATCTTCAGGGTAAAAAGGGTTTGCTTCAGAGTGACCAAGAGCTTTTCTCAACATCTGGTGCTGATACCATTAGCATTGTCAACAAGTTCAGTGCTGACAAAAATGCTTTCTTTGATAGCTTTGAAGCCGCAATGATTAAAATGGGTAATATTGGTGTGCTGACCGGGAAAAAAGGAGAGATTAGAAAACATTGCAATTTTGTTAATTCAAAATCAGTTGAACTTGGTCTAGTGAATGTGGCTTCCACAGATTCATCGGGTATGGTTAGCTCAATTTAA
Protein sequence

>Msa0287480

ASVLLNKTDTIVSEQDAFPNINSLRGLDVVNRIKTAVENACPNTVSCADILALSAQISSILADGPNWKVPLGRRDGLTANQSLANQNLPAPFNSLDQLKSAFAAQGLSTTDLVALSGAHTFGRARCTFITDRLYNFSSTGKPDPTLNTTYLQELRKICPNGGPPNNLANFDPTTPDKFDKNYYSNLQGKKGLLQSDQELFSTSGADTISIVNKFSADKNAFFDSFEAAMIKMGNIGVLTGKKGEIRKHCNFVNSKSVELGLVNVASTDSSGMVSSI*