AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375790 MtrunA17_Chr3g0126121 93.694 222 11 1 1 219 1 222 1.39e-151 419
Msa0375790 MtrunA17_Chr1g0159211 66.667 219 68 3 5 219 6 223 5.01e-102 294
Msa0375790 MtrunA17_Chr1g0159221 64.732 224 73 3 1 219 1 223 2.00e-100 290
Msa0375790 MtrunA17_Chr1g0187451 37.968 187 108 4 36 219 21 202 3.18e-35 124
Msa0375790 MtrunA17_Chr1g0166501 36.898 187 110 4 36 219 21 202 1.91e-32 116
Msa0375790 MtrunA17_Chr1g0187431 38.000 100 58 2 61 157 1 99 2.80e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375790 AT1G21360.1 50.446 224 103 4 1 218 1 222 4.71e-70 213
Msa0375790 AT3G21260.3 51.327 226 101 4 1 218 8 232 1.31e-64 200
Msa0375790 AT1G21360.3 51.497 167 73 4 1 161 1 165 2.64e-50 162
Msa0375790 AT1G21360.2 50.311 161 76 2 61 218 1 160 1.05e-46 152
Msa0375790 AT3G21260.2 50.676 148 69 2 74 218 2 148 3.41e-39 132
Msa0375790 AT3G21260.1 50.000 144 68 2 78 218 1 143 3.03e-37 127
Msa0375790 AT2G33470.2 37.158 183 107 3 40 219 25 202 2.73e-31 114
Msa0375790 AT2G33470.1 37.158 183 107 3 40 219 25 202 2.73e-31 114

Find 47 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTGTTTCAAATATTT+TGG 0.115348 3_1:+75601477 None:intergenic
ATTTGGTTACCTTGATATTC+TGG 0.228376 3_1:+75601062 None:intergenic
TAAATAAGCTTGGTGAGTTT+TGG 0.262198 3_1:-75601422 Msa0375790:five_prime_UTR
AACTAAATTTGAATTGGTTA+AGG 0.302553 3_1:+75600788 None:intergenic
ACTAAATTTGAATTGGTTAA+GGG 0.321755 3_1:+75600789 None:intergenic
TACATGGTTCTACAAGTTCT+TGG 0.339211 3_1:-75601224 Msa0375790:intron
GGTGTATACTGTATATAGTT+TGG 0.343530 3_1:-75599751 Msa0375790:three_prime_UTR
TATCTCAACTAAATTTGAAT+TGG 0.352099 3_1:+75600782 None:intergenic
TTTGTATCAGAGAAAGTATA+AGG 0.358516 3_1:-75601391 Msa0375790:five_prime_UTR
AAAGATAGGAAAGGCTTTGT+TGG 0.395007 3_1:+75601251 None:intergenic
TCTCTCAAAACAGCCATTGT+TGG 0.415107 3_1:+75601094 None:intergenic
GAACCATGTAACATAAAGAT+AGG 0.421906 3_1:+75601237 None:intergenic
CGAAGACTGTGACATCCTAA+TGG 0.427399 3_1:-75600006 Msa0375790:CDS
CTTTGAAACCATGGCATGGA+TGG 0.431560 3_1:-75600461 Msa0375790:CDS
AAGATAGGAAAGGCTTTGTT+GGG 0.447613 3_1:+75601252 None:intergenic
TTTCCTATCTTTATGTTACA+TGG 0.447670 3_1:-75601240 Msa0375790:CDS
TGTGCCACTCTGCAGATCCC+TGG 0.484896 3_1:-75600571 Msa0375790:CDS
ACAACGCTGATGTGAAATCC+AGG 0.489803 3_1:+75600553 None:intergenic
ACCAGCCTCATGATCTTCAC+CGG 0.500449 3_1:+75601283 None:intergenic
AGAAAGTGTATAACTTGGAC+AGG 0.511125 3_1:-75599824 Msa0375790:CDS
GAAAGAGAGAGAAACTCATA+AGG 0.511506 3_1:+75601503 None:intergenic
GAAACAATTAATAATTGGCA+TGG 0.513609 3_1:-75601528 None:intergenic
TTTGCAGAAAGTGTATAACT+TGG 0.513854 3_1:-75599829 Msa0375790:intron
CAATGGATATCCTCAAGAAA+AGG 0.520025 3_1:+75599951 None:intergenic
TTTGCAACTTTGCATCCAGC+TGG 0.527690 3_1:-75599654 None:intergenic
AAGCACTGAAAGCTCTTCAA+TGG 0.530059 3_1:+75601319 None:intergenic
AAAGTATAAGGGAAATGAAG+AGG 0.531105 3_1:-75601379 Msa0375790:exon
TTGTATCAGAGAAAGTATAA+GGG 0.535884 3_1:-75601390 Msa0375790:five_prime_UTR
CCCGGTGAAGATCATGAGGC+TGG 0.540807 3_1:-75601284 Msa0375790:CDS
GATTGCCTTGCAGATAAGGT+AGG 0.541489 3_1:-75601118 Msa0375790:intron
GTTATTTACATGAAAACAGA+AGG 0.561060 3_1:+75599720 None:intergenic
CCAGCCTCATGATCTTCACC+GGG 0.565987 3_1:+75601284 None:intergenic
ATTGCCTTGCAGATAAGGTA+GGG 0.578408 3_1:-75601117 Msa0375790:intron
AGACATTCACCAGAATATCA+AGG 0.580160 3_1:-75601071 Msa0375790:intron
ATGATGCAACTTTGAAACCA+TGG 0.590512 3_1:-75600470 Msa0375790:CDS
AATGCAAAGAAGAGAGTTAG+CGG 0.596549 3_1:-75600735 Msa0375790:CDS
TTACATGAAAACAGAAGGAG+AGG 0.598004 3_1:+75599725 None:intergenic
GATGCAATCCATCCATGCCA+TGG 0.623186 3_1:+75600453 None:intergenic
ATGTAACATAAAGATAGGAA+AGG 0.631348 3_1:+75601242 None:intergenic
TCAAGCTTACTAGAATACAA+TGG 0.631531 3_1:+75599934 None:intergenic
GCAACTTTGAAACCATGGCA+TGG 0.637985 3_1:-75600465 Msa0375790:CDS
TTAAAGTCAGAAACTAGCAA+AGG 0.639671 3_1:-75600759 Msa0375790:CDS
GTGCTTGTTATAGTCAAACC+CGG 0.642505 3_1:-75601302 Msa0375790:CDS
CAACGCTGATGTGAAATCCA+GGG 0.662708 3_1:+75600554 None:intergenic
CAAACCCGGTGAAGATCATG+AGG 0.663786 3_1:-75601288 Msa0375790:CDS
AGATAAGGTAGGGCCAACAA+TGG 0.678454 3_1:-75601107 Msa0375790:CDS
AAATCCAGGGATCTGCAGAG+TGG 0.716711 3_1:+75600567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATAAATATTCATC+AGG + chr3_1:75601326-75601345 None:intergenic 10.0%
!! AAAATAAATAAATATTCATC+AGG + chr3_1:75601326-75601345 None:intergenic 10.0%
!!! AAACATACTTAAAATTTGTT+TGG + chr3_1:75600024-75600043 None:intergenic 15.0%
!!! TTTTCAAGAAAAATAACTTA+TGG - chr3_1:75600511-75600530 Msa0375790:CDS 15.0%
!!! AAACATACTTAAAATTTGTT+TGG + chr3_1:75600024-75600043 None:intergenic 15.0%
!!! TTTTCAAGAAAAATAACTTA+TGG - chr3_1:75600511-75600530 Msa0375790:CDS 15.0%
!!! GTTGATTGTTTCAAATATTT+TGG + chr3_1:75599698-75599717 None:intergenic 20.0%
!!! ATTTTGCTTATAAATAAGCT+TGG - chr3_1:75599740-75599759 Msa0375790:three_prime_UTR 20.0%
!! GATCAAAAATAAAGAGAAAA+AGG + chr3_1:75599984-75600003 None:intergenic 20.0%
!! ACTAAATTTGAATTGGTTAA+GGG + chr3_1:75600386-75600405 None:intergenic 20.0%
!! AACTAAATTTGAATTGGTTA+AGG + chr3_1:75600387-75600406 None:intergenic 20.0%
!! TATCTCAACTAAATTTGAAT+TGG + chr3_1:75600393-75600412 None:intergenic 20.0%
!! CAAGAAAAAACTTATTCATA+TGG + chr3_1:75600561-75600580 None:intergenic 20.0%
!! AAAAGATCCTAAAAAGAATA+TGG - chr3_1:75600658-75600677 Msa0375790:intron 20.0%
!!! ACAATGTATAACTTGTATTA+CGG + chr3_1:75600909-75600928 None:intergenic 20.0%
!!! GTTGATTGTTTCAAATATTT+TGG + chr3_1:75599698-75599717 None:intergenic 20.0%
!!! ATTTTGCTTATAAATAAGCT+TGG - chr3_1:75599740-75599759 Msa0375790:three_prime_UTR 20.0%
!! GATCAAAAATAAAGAGAAAA+AGG + chr3_1:75599984-75600003 None:intergenic 20.0%
!! ACTAAATTTGAATTGGTTAA+GGG + chr3_1:75600386-75600405 None:intergenic 20.0%
!! AACTAAATTTGAATTGGTTA+AGG + chr3_1:75600387-75600406 None:intergenic 20.0%
!! TATCTCAACTAAATTTGAAT+TGG + chr3_1:75600393-75600412 None:intergenic 20.0%
!! CAAGAAAAAACTTATTCATA+TGG + chr3_1:75600561-75600580 None:intergenic 20.0%
!! AAAAGATCCTAAAAAGAATA+TGG - chr3_1:75600658-75600677 Msa0375790:intron 20.0%
!!! ACAATGTATAACTTGTATTA+CGG + chr3_1:75600909-75600928 None:intergenic 20.0%
!! TTTGTATCAGAGAAAGTATA+AGG - chr3_1:75599781-75599800 Msa0375790:three_prime_UTR 25.0%
!! TTGTATCAGAGAAAGTATAA+GGG - chr3_1:75599782-75599801 Msa0375790:three_prime_UTR 25.0%
! ATGTAACATAAAGATAGGAA+AGG + chr3_1:75599933-75599952 None:intergenic 25.0%
! TTTCCTATCTTTATGTTACA+TGG - chr3_1:75599932-75599951 Msa0375790:intron 25.0%
! TCAAATTATTACATGTGTCA+AGG + chr3_1:75600163-75600182 None:intergenic 25.0%
! TATAGTAGTTAGTTACACAT+TGG - chr3_1:75600265-75600284 Msa0375790:intron 25.0%
!!! TTTTGGTAACTATTGAAAAG+TGG + chr3_1:75600788-75600807 None:intergenic 25.0%
!! CAATGTCACAATTTCAATTT+TGG + chr3_1:75600805-75600824 None:intergenic 25.0%
!!! AAATCTGCATTTTTTCCATT+AGG + chr3_1:75601184-75601203 None:intergenic 25.0%
! GTTATTTACATGAAAACAGA+AGG + chr3_1:75601455-75601474 None:intergenic 25.0%
!! TTTGTATCAGAGAAAGTATA+AGG - chr3_1:75599781-75599800 Msa0375790:three_prime_UTR 25.0%
!! TTGTATCAGAGAAAGTATAA+GGG - chr3_1:75599782-75599801 Msa0375790:three_prime_UTR 25.0%
! ATGTAACATAAAGATAGGAA+AGG + chr3_1:75599933-75599952 None:intergenic 25.0%
! TTTCCTATCTTTATGTTACA+TGG - chr3_1:75599932-75599951 Msa0375790:intron 25.0%
! TCAAATTATTACATGTGTCA+AGG + chr3_1:75600163-75600182 None:intergenic 25.0%
! TATAGTAGTTAGTTACACAT+TGG - chr3_1:75600265-75600284 Msa0375790:intron 25.0%
!!! TTTTGGTAACTATTGAAAAG+TGG + chr3_1:75600788-75600807 None:intergenic 25.0%
!! CAATGTCACAATTTCAATTT+TGG + chr3_1:75600805-75600824 None:intergenic 25.0%
!!! AAATCTGCATTTTTTCCATT+AGG + chr3_1:75601184-75601203 None:intergenic 25.0%
! GTTATTTACATGAAAACAGA+AGG + chr3_1:75601455-75601474 None:intergenic 25.0%
!! TAAATAAGCTTGGTGAGTTT+TGG - chr3_1:75599750-75599769 Msa0375790:three_prime_UTR 30.0%
AAAGTATAAGGGAAATGAAG+AGG - chr3_1:75599793-75599812 Msa0375790:exon 30.0%
GAACCATGTAACATAAAGAT+AGG + chr3_1:75599938-75599957 None:intergenic 30.0%
ATTTGGTTACCTTGATATTC+TGG + chr3_1:75600113-75600132 None:intergenic 30.0%
TTAAAGTCAGAAACTAGCAA+AGG - chr3_1:75600413-75600432 Msa0375790:intron 30.0%
ATTGAAAAGTGGAAGAAAAG+AGG + chr3_1:75600777-75600796 None:intergenic 30.0%
GCTCATAGTTACTAATAAGT+GGG - chr3_1:75600839-75600858 Msa0375790:intron 30.0%
!! CTTTCTATCATTTCGAGTTT+AGG + chr3_1:75600936-75600955 None:intergenic 30.0%
CTAAACTCGAAATGATAGAA+AGG - chr3_1:75600934-75600953 Msa0375790:intron 30.0%
!! CGAAGTTTGGTAATGAAATT+CGG + chr3_1:75601001-75601020 None:intergenic 30.0%
AATTTCATTACCAAACTTCG+TGG - chr3_1:75601001-75601020 Msa0375790:intron 30.0%
!! ATAGCTTTACTCTTTTGAAC+CGG - chr3_1:75601044-75601063 Msa0375790:intron 30.0%
! TCCATGAAAGTTTTTGTATC+AGG + chr3_1:75601128-75601147 None:intergenic 30.0%
TCAAGCTTACTAGAATACAA+TGG + chr3_1:75601241-75601260 None:intergenic 30.0%
! TTTGCAGAAAGTGTATAACT+TGG - chr3_1:75601343-75601362 Msa0375790:CDS 30.0%
! AGCTGATGTAGAATTTTACT+TGG - chr3_1:75601400-75601419 Msa0375790:five_prime_UTR 30.0%
GGTGTATACTGTATATAGTT+TGG - chr3_1:75601421-75601440 Msa0375790:five_prime_UTR 30.0%
!! TAAATAAGCTTGGTGAGTTT+TGG - chr3_1:75599750-75599769 Msa0375790:three_prime_UTR 30.0%
AAAGTATAAGGGAAATGAAG+AGG - chr3_1:75599793-75599812 Msa0375790:exon 30.0%
GAACCATGTAACATAAAGAT+AGG + chr3_1:75599938-75599957 None:intergenic 30.0%
ATTTGGTTACCTTGATATTC+TGG + chr3_1:75600113-75600132 None:intergenic 30.0%
TTAAAGTCAGAAACTAGCAA+AGG - chr3_1:75600413-75600432 Msa0375790:intron 30.0%
ATTGAAAAGTGGAAGAAAAG+AGG + chr3_1:75600777-75600796 None:intergenic 30.0%
GCTCATAGTTACTAATAAGT+GGG - chr3_1:75600839-75600858 Msa0375790:intron 30.0%
!! CTTTCTATCATTTCGAGTTT+AGG + chr3_1:75600936-75600955 None:intergenic 30.0%
CTAAACTCGAAATGATAGAA+AGG - chr3_1:75600934-75600953 Msa0375790:intron 30.0%
!! CGAAGTTTGGTAATGAAATT+CGG + chr3_1:75601001-75601020 None:intergenic 30.0%
AATTTCATTACCAAACTTCG+TGG - chr3_1:75601001-75601020 Msa0375790:intron 30.0%
!! ATAGCTTTACTCTTTTGAAC+CGG - chr3_1:75601044-75601063 Msa0375790:intron 30.0%
! TCCATGAAAGTTTTTGTATC+AGG + chr3_1:75601128-75601147 None:intergenic 30.0%
TCAAGCTTACTAGAATACAA+TGG + chr3_1:75601241-75601260 None:intergenic 30.0%
! TTTGCAGAAAGTGTATAACT+TGG - chr3_1:75601343-75601362 Msa0375790:CDS 30.0%
! AGCTGATGTAGAATTTTACT+TGG - chr3_1:75601400-75601419 Msa0375790:five_prime_UTR 30.0%
GGTGTATACTGTATATAGTT+TGG - chr3_1:75601421-75601440 Msa0375790:five_prime_UTR 30.0%
GAAAGAGAGAGAAACTCATA+AGG + chr3_1:75599672-75599691 None:intergenic 35.0%
!! AAGATAGGAAAGGCTTTGTT+GGG + chr3_1:75599923-75599942 None:intergenic 35.0%
! AAAGATAGGAAAGGCTTTGT+TGG + chr3_1:75599924-75599943 None:intergenic 35.0%
! TACATGGTTCTACAAGTTCT+TGG - chr3_1:75599948-75599967 Msa0375790:CDS 35.0%
AGACATTCACCAGAATATCA+AGG - chr3_1:75600101-75600120 Msa0375790:intron 35.0%
AATGCAAAGAAGAGAGTTAG+CGG - chr3_1:75600437-75600456 Msa0375790:intron 35.0%
! GCTTGCTCCATATTCTTTTT+AGG + chr3_1:75600668-75600687 None:intergenic 35.0%
!! ATGATGCAACTTTGAAACCA+TGG - chr3_1:75600702-75600721 Msa0375790:intron 35.0%
TGGAAGAAAAGAGGAAGAAA+TGG + chr3_1:75600768-75600787 None:intergenic 35.0%
TGACATTGAACTGTTGAGTA+TGG - chr3_1:75600817-75600836 Msa0375790:CDS 35.0%
GGCTCATAGTTACTAATAAG+TGG - chr3_1:75600838-75600857 Msa0375790:intron 35.0%
GTAATGAAATTCGGCCAATT+GGG + chr3_1:75600992-75601011 None:intergenic 35.0%
!! TAGCTTTACTCTTTTGAACC+GGG - chr3_1:75601045-75601064 Msa0375790:intron 35.0%
TTCATGTTAGAATAGCAACC+CGG + chr3_1:75601066-75601085 None:intergenic 35.0%
! ACTAACAGATTTTGTACTGC+AGG - chr3_1:75601085-75601104 Msa0375790:CDS 35.0%
GCCTGATACAAAAACTTTCA+TGG - chr3_1:75601124-75601143 Msa0375790:intron 35.0%
CAATGGATATCCTCAAGAAA+AGG + chr3_1:75601224-75601243 None:intergenic 35.0%
TCATCAGGTAAGTATATGAC+AGG + chr3_1:75601311-75601330 None:intergenic 35.0%
! AGAAAGTGTATAACTTGGAC+AGG - chr3_1:75601348-75601367 Msa0375790:CDS 35.0%
TTACATGAAAACAGAAGGAG+AGG + chr3_1:75601450-75601469 None:intergenic 35.0%
GAAAGAGAGAGAAACTCATA+AGG + chr3_1:75599672-75599691 None:intergenic 35.0%
!! AAGATAGGAAAGGCTTTGTT+GGG + chr3_1:75599923-75599942 None:intergenic 35.0%
! AAAGATAGGAAAGGCTTTGT+TGG + chr3_1:75599924-75599943 None:intergenic 35.0%
! TACATGGTTCTACAAGTTCT+TGG - chr3_1:75599948-75599967 Msa0375790:CDS 35.0%
AGACATTCACCAGAATATCA+AGG - chr3_1:75600101-75600120 Msa0375790:intron 35.0%
AATGCAAAGAAGAGAGTTAG+CGG - chr3_1:75600437-75600456 Msa0375790:intron 35.0%
! GCTTGCTCCATATTCTTTTT+AGG + chr3_1:75600668-75600687 None:intergenic 35.0%
!! ATGATGCAACTTTGAAACCA+TGG - chr3_1:75600702-75600721 Msa0375790:intron 35.0%
TGGAAGAAAAGAGGAAGAAA+TGG + chr3_1:75600768-75600787 None:intergenic 35.0%
TGACATTGAACTGTTGAGTA+TGG - chr3_1:75600817-75600836 Msa0375790:CDS 35.0%
GGCTCATAGTTACTAATAAG+TGG - chr3_1:75600838-75600857 Msa0375790:intron 35.0%
GTAATGAAATTCGGCCAATT+GGG + chr3_1:75600992-75601011 None:intergenic 35.0%
!! TAGCTTTACTCTTTTGAACC+GGG - chr3_1:75601045-75601064 Msa0375790:intron 35.0%
TTCATGTTAGAATAGCAACC+CGG + chr3_1:75601066-75601085 None:intergenic 35.0%
! ACTAACAGATTTTGTACTGC+AGG - chr3_1:75601085-75601104 Msa0375790:CDS 35.0%
GCCTGATACAAAAACTTTCA+TGG - chr3_1:75601124-75601143 Msa0375790:intron 35.0%
CAATGGATATCCTCAAGAAA+AGG + chr3_1:75601224-75601243 None:intergenic 35.0%
TCATCAGGTAAGTATATGAC+AGG + chr3_1:75601311-75601330 None:intergenic 35.0%
! AGAAAGTGTATAACTTGGAC+AGG - chr3_1:75601348-75601367 Msa0375790:CDS 35.0%
TTACATGAAAACAGAAGGAG+AGG + chr3_1:75601450-75601469 None:intergenic 35.0%
!! AAGCACTGAAAGCTCTTCAA+TGG + chr3_1:75599856-75599875 None:intergenic 40.0%
!! GTGCTTGTTATAGTCAAACC+CGG - chr3_1:75599870-75599889 Msa0375790:intron 40.0%
GATTGATTGCCTTGCAGATA+AGG - chr3_1:75600050-75600069 Msa0375790:CDS 40.0%
ATTGCCTTGCAGATAAGGTA+GGG - chr3_1:75600055-75600074 Msa0375790:CDS 40.0%
TCTCTCAAAACAGCCATTGT+TGG + chr3_1:75600081-75600100 None:intergenic 40.0%
GTCATGTGTGTGTGAGTATT+TGG + chr3_1:75600130-75600149 None:intergenic 40.0%
! TATGTGTCATTGCATTGCAG+AGG - chr3_1:75600336-75600355 Msa0375790:intron 40.0%
! AATCCTTTGTTTGGCTCACT+AGG - chr3_1:75600465-75600484 Msa0375790:CDS 40.0%
CCTGATTACAACATTACCTC+TGG + chr3_1:75600885-75600904 None:intergenic 40.0%
CCAGAGGTAATGTTGTAATC+AGG - chr3_1:75600882-75600901 Msa0375790:intron 40.0%
GGTAATGAAATTCGGCCAAT+TGG + chr3_1:75600993-75601012 None:intergenic 40.0%
AAACAGTGAACCACGAAGTT+TGG + chr3_1:75601014-75601033 None:intergenic 40.0%
! AACAGATTTTGTACTGCAGG+TGG - chr3_1:75601088-75601107 Msa0375790:CDS 40.0%
! AGTCTTCGTCTTTTTCTCTG+AGG + chr3_1:75601154-75601173 None:intergenic 40.0%
! TTTGCTTGTGCCTTTTCTTG+AGG - chr3_1:75601211-75601230 Msa0375790:intron 40.0%
CATCAATTGTTCATGCTCAC+TGG - chr3_1:75601281-75601300 Msa0375790:CDS 40.0%
!! AAGCACTGAAAGCTCTTCAA+TGG + chr3_1:75599856-75599875 None:intergenic 40.0%
!! GTGCTTGTTATAGTCAAACC+CGG - chr3_1:75599870-75599889 Msa0375790:intron 40.0%
GATTGATTGCCTTGCAGATA+AGG - chr3_1:75600050-75600069 Msa0375790:CDS 40.0%
ATTGCCTTGCAGATAAGGTA+GGG - chr3_1:75600055-75600074 Msa0375790:CDS 40.0%
TCTCTCAAAACAGCCATTGT+TGG + chr3_1:75600081-75600100 None:intergenic 40.0%
GTCATGTGTGTGTGAGTATT+TGG + chr3_1:75600130-75600149 None:intergenic 40.0%
! TATGTGTCATTGCATTGCAG+AGG - chr3_1:75600336-75600355 Msa0375790:intron 40.0%
! AATCCTTTGTTTGGCTCACT+AGG - chr3_1:75600465-75600484 Msa0375790:CDS 40.0%
CCTGATTACAACATTACCTC+TGG + chr3_1:75600885-75600904 None:intergenic 40.0%
CCAGAGGTAATGTTGTAATC+AGG - chr3_1:75600882-75600901 Msa0375790:intron 40.0%
GGTAATGAAATTCGGCCAAT+TGG + chr3_1:75600993-75601012 None:intergenic 40.0%
AAACAGTGAACCACGAAGTT+TGG + chr3_1:75601014-75601033 None:intergenic 40.0%
! AACAGATTTTGTACTGCAGG+TGG - chr3_1:75601088-75601107 Msa0375790:CDS 40.0%
! AGTCTTCGTCTTTTTCTCTG+AGG + chr3_1:75601154-75601173 None:intergenic 40.0%
! TTTGCTTGTGCCTTTTCTTG+AGG - chr3_1:75601211-75601230 Msa0375790:intron 40.0%
CATCAATTGTTCATGCTCAC+TGG - chr3_1:75601281-75601300 Msa0375790:CDS 40.0%
GATTGCCTTGCAGATAAGGT+AGG - chr3_1:75600054-75600073 Msa0375790:CDS 45.0%
AGATAAGGTAGGGCCAACAA+TGG - chr3_1:75600065-75600084 Msa0375790:CDS 45.0%
TACTCACACACACATGACAC+TGG - chr3_1:75600132-75600151 Msa0375790:intron 45.0%
TGTCGATGTTGTCTCAGTGT+CGG - chr3_1:75600202-75600221 Msa0375790:intron 45.0%
TGTCATTGCATTGCAGAGGT+TGG - chr3_1:75600340-75600359 Msa0375790:intron 45.0%
GCGGCAGTAAATCCTTTGTT+TGG - chr3_1:75600456-75600475 Msa0375790:CDS 45.0%
TCACCTAGTGAGCCAAACAA+AGG + chr3_1:75600471-75600490 None:intergenic 45.0%
CAACGCTGATGTGAAATCCA+GGG + chr3_1:75600621-75600640 None:intergenic 45.0%
ACAACGCTGATGTGAAATCC+AGG + chr3_1:75600622-75600641 None:intergenic 45.0%
!! GCAACTTTGAAACCATGGCA+TGG - chr3_1:75600707-75600726 Msa0375790:intron 45.0%
!! CTTTGAAACCATGGCATGGA+TGG - chr3_1:75600711-75600730 Msa0375790:intron 45.0%
CGAAGACTGTGACATCCTAA+TGG - chr3_1:75601166-75601185 Msa0375790:intron 45.0%
GATTGCCTTGCAGATAAGGT+AGG - chr3_1:75600054-75600073 Msa0375790:CDS 45.0%
AGATAAGGTAGGGCCAACAA+TGG - chr3_1:75600065-75600084 Msa0375790:CDS 45.0%
TACTCACACACACATGACAC+TGG - chr3_1:75600132-75600151 Msa0375790:intron 45.0%
TGTCGATGTTGTCTCAGTGT+CGG - chr3_1:75600202-75600221 Msa0375790:intron 45.0%
TGTCATTGCATTGCAGAGGT+TGG - chr3_1:75600340-75600359 Msa0375790:intron 45.0%
GCGGCAGTAAATCCTTTGTT+TGG - chr3_1:75600456-75600475 Msa0375790:CDS 45.0%
TCACCTAGTGAGCCAAACAA+AGG + chr3_1:75600471-75600490 None:intergenic 45.0%
CAACGCTGATGTGAAATCCA+GGG + chr3_1:75600621-75600640 None:intergenic 45.0%
ACAACGCTGATGTGAAATCC+AGG + chr3_1:75600622-75600641 None:intergenic 45.0%
!! GCAACTTTGAAACCATGGCA+TGG - chr3_1:75600707-75600726 Msa0375790:intron 45.0%
!! CTTTGAAACCATGGCATGGA+TGG - chr3_1:75600711-75600730 Msa0375790:intron 45.0%
CGAAGACTGTGACATCCTAA+TGG - chr3_1:75601166-75601185 Msa0375790:intron 45.0%
CAAACCCGGTGAAGATCATG+AGG - chr3_1:75599884-75599903 Msa0375790:intron 50.0%
ACCAGCCTCATGATCTTCAC+CGG + chr3_1:75599892-75599911 None:intergenic 50.0%
TTGGCCCTACCTTATCTGCA+AGG + chr3_1:75600062-75600081 None:intergenic 50.0%
AAATCCAGGGATCTGCAGAG+TGG + chr3_1:75600608-75600627 None:intergenic 50.0%
GATGCAATCCATCCATGCCA+TGG + chr3_1:75600722-75600741 None:intergenic 50.0%
TGCTGCAGACACTATGCAGT+CGG - chr3_1:75600957-75600976 Msa0375790:intron 50.0%
CACTATGCAGTCGGAAACGT+AGG - chr3_1:75600966-75600985 Msa0375790:intron 50.0%
CAAACCCGGTGAAGATCATG+AGG - chr3_1:75599884-75599903 Msa0375790:intron 50.0%
ACCAGCCTCATGATCTTCAC+CGG + chr3_1:75599892-75599911 None:intergenic 50.0%
TTGGCCCTACCTTATCTGCA+AGG + chr3_1:75600062-75600081 None:intergenic 50.0%
AAATCCAGGGATCTGCAGAG+TGG + chr3_1:75600608-75600627 None:intergenic 50.0%
GATGCAATCCATCCATGCCA+TGG + chr3_1:75600722-75600741 None:intergenic 50.0%
TGCTGCAGACACTATGCAGT+CGG - chr3_1:75600957-75600976 Msa0375790:intron 50.0%
CACTATGCAGTCGGAAACGT+AGG - chr3_1:75600966-75600985 Msa0375790:intron 50.0%
CCAGCCTCATGATCTTCACC+GGG + chr3_1:75599891-75599910 None:intergenic 55.0%
CATTACCTCTGGACCGTAGC+TGG + chr3_1:75600874-75600893 None:intergenic 55.0%
GTCGGAAACGTAGGCCCAAT+TGG - chr3_1:75600975-75600994 Msa0375790:intron 55.0%
CCAGCCTCATGATCTTCACC+GGG + chr3_1:75599891-75599910 None:intergenic 55.0%
CATTACCTCTGGACCGTAGC+TGG + chr3_1:75600874-75600893 None:intergenic 55.0%
GTCGGAAACGTAGGCCCAAT+TGG - chr3_1:75600975-75600994 Msa0375790:intron 55.0%
CCCGGTGAAGATCATGAGGC+TGG - chr3_1:75599888-75599907 Msa0375790:intron 60.0%
! TGTGCCACTCTGCAGATCCC+TGG - chr3_1:75600601-75600620 Msa0375790:intron 60.0%
TGGGCAAGTCGCTCCAGCTA+CGG - chr3_1:75600858-75600877 Msa0375790:intron 60.0%
CCCGGTGAAGATCATGAGGC+TGG - chr3_1:75599888-75599907 Msa0375790:intron 60.0%
! TGTGCCACTCTGCAGATCCC+TGG - chr3_1:75600601-75600620 Msa0375790:intron 60.0%
TGGGCAAGTCGCTCCAGCTA+CGG - chr3_1:75600858-75600877 Msa0375790:intron 60.0%
TCGCTCCAGCTACGGTCCAG+AGG - chr3_1:75600866-75600885 Msa0375790:intron 65.0%
TCGCTCCAGCTACGGTCCAG+AGG - chr3_1:75600866-75600885 Msa0375790:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 75599657 75601537 75599657 ID=Msa0375790;Name=Msa0375790
chr3_1 mRNA 75599657 75601537 75599657 ID=Msa0375790-mRNA-1;Parent=Msa0375790;Name=Msa0375790-mRNA-1;_AED=0.18;_eAED=0.18;_QI=150|0.8|0.66|1|1|1|6|152|219
chr3_1 exon 75599657 75599844 75599657 ID=Msa0375790-mRNA-1:exon:17782;Parent=Msa0375790-mRNA-1
chr3_1 exon 75599944 75600087 75599944 ID=Msa0375790-mRNA-1:exon:17781;Parent=Msa0375790-mRNA-1
chr3_1 exon 75600440 75600594 75600440 ID=Msa0375790-mRNA-1:exon:17780;Parent=Msa0375790-mRNA-1
chr3_1 exon 75600733 75600838 75600733 ID=Msa0375790-mRNA-1:exon:17779;Parent=Msa0375790-mRNA-1
chr3_1 exon 75601072 75601127 75601072 ID=Msa0375790-mRNA-1:exon:17778;Parent=Msa0375790-mRNA-1
chr3_1 exon 75601225 75601537 75601225 ID=Msa0375790-mRNA-1:exon:17777;Parent=Msa0375790-mRNA-1
chr3_1 five_prime_UTR 75601388 75601537 75601388 ID=Msa0375790-mRNA-1:five_prime_utr;Parent=Msa0375790-mRNA-1
chr3_1 CDS 75601225 75601387 75601225 ID=Msa0375790-mRNA-1:cds;Parent=Msa0375790-mRNA-1
chr3_1 CDS 75601072 75601127 75601072 ID=Msa0375790-mRNA-1:cds;Parent=Msa0375790-mRNA-1
chr3_1 CDS 75600733 75600838 75600733 ID=Msa0375790-mRNA-1:cds;Parent=Msa0375790-mRNA-1
chr3_1 CDS 75600440 75600594 75600440 ID=Msa0375790-mRNA-1:cds;Parent=Msa0375790-mRNA-1
chr3_1 CDS 75599944 75600087 75599944 ID=Msa0375790-mRNA-1:cds;Parent=Msa0375790-mRNA-1
chr3_1 CDS 75599809 75599844 75599809 ID=Msa0375790-mRNA-1:cds;Parent=Msa0375790-mRNA-1
chr3_1 three_prime_UTR 75599657 75599808 75599657 ID=Msa0375790-mRNA-1:three_prime_utr;Parent=Msa0375790-mRNA-1
Gene Sequence

>Msa0375790

ATGAAGAGGAGTAGAGATATAGAGAAGAGATCAGAGATAAACTCTGCCATTGAAGAGCTTTCAGTGCTTGTTATAGTCAAACCCGGTGAAGATCATGAGGCTGGTGCACGCATCCCAACAAAGCCTTTCCTATCTTTATGTTACATGGTTCTACAAGTTCTTGATAAGGTAGGGCCAACAATGGCTGTTTTGAGAGAAGACATTCACCAGAATATCAAGAGGTTGGAAGCAATACATGAATCAAATCCCTTAACCAATTCAAATTTAGTTGAGATATTAAAGTCAGAAACTAGCAAAGGCAATGCAAAGAAGAGAGTTAGCGGCAATGTGCCACTCTGCAGATCCCTGGATTTCACATCAGCGTTGTTACAAGCACTGCTAGTAAAAGATCCTAAAAAGAATATGGAGCAAGCAGTTCAAGAGTCTTATGATGCAACTTTGAAACCATGGCATGGATGGATTGCATCAGCTGCTTTCAGAGTGGCTATAAAACTAGTGCCTGATACAAAAACTTTCATGGATCTCCTCAGAGAAAAAGACGAAGACTGTGACATCCTAATGGAAAAAATGCAGATTTTAGTTTCTTTGCTTGTGCCTTTTCTTGAGGATATCCATTGTATTCTAAAAGTGTATAACTTGGACAGGCTTAAGTCAAATTGA

Protein sequence

>Msa0375790

MKRSRDIEKRSEINSAIEELSVLVIVKPGEDHEAGARIPTKPFLSLCYMVLQVLDKVGPTMAVLREDIHQNIKRLEAIHESNPLTNSNLVEILKSETSKGNAKKRVSGNVPLCRSLDFTSALLQALLVKDPKKNMEQAVQESYDATLKPWHGWIASAAFRVAIKLVPDTKTFMDLLREKDEDCDILMEKMQILVSLLVPFLEDIHCILKVYNLDRLKSN*