AlfalfaGEDB | Msa0312590

M. sativa cultivar zhongmu-4 / Msa0312590

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312590	XP_003593537.1	98.649	370	5	0	1	370	1	370	0.0	761

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312590	sp\|Q93YN1\|CRPK1_ARATH	47.774	337	167	4	4	337	2	332	1.51e-111	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312590	G7IP26	98.649	370	5	0	1	370	1	370	0.0	761

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0312590	0.833398	5.456589e-56	-8.615850e-47
Msa0090380	Msa0312590	0.822790	1.962220e-53	-8.615850e-47
Msa0137860	Msa0312590	0.821782	3.361262e-53	-8.615850e-47
Msa0176260	Msa0312590	0.815711	8.036371e-52	-8.615850e-47
Msa0224130	Msa0312590	0.806207	9.201585e-50	-8.615850e-47
Msa0233970	Msa0312590	0.980759	5.755729e-151	-8.615850e-47
Msa0254470	Msa0312590	0.807648	4.561367e-50	-8.615850e-47
Msa0265270	Msa0312590	0.815498	8.966301e-52	-8.615850e-47
Msa0268670	Msa0312590	-0.801686	8.009524e-49	-8.615850e-47
Msa0272400	Msa0312590	0.992209	6.194511e-192	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312590	MtrunA17_Chr2g0281971	98.649	370	5	0	1	370	1	370	0.0	761
Msa0312590	MtrunA17_Chr4g0047561	71.351	370	103	2	1	370	1	367	0.0	534
Msa0312590	MtrunA17_Chr7g0242201	53.824	340	152	1	1	340	1	335	1.60e-129	376
Msa0312590	MtrunA17_Chr2g0312561	51.623	308	148	1	31	337	25	332	1.24e-117	346
Msa0312590	MtrunA17_Chr8g0358911	52.787	305	143	1	34	337	31	335	1.48e-115	341
Msa0312590	MtrunA17_Chr2g0312571	47.941	340	171	3	1	337	1	337	1.07e-110	331
Msa0312590	MtrunA17_Chr8g0360591	47.507	341	176	3	14	351	9	349	1.11e-110	328
Msa0312590	MtrunA17_Chr8g0358821	53.633	289	131	1	37	325	678	963	9.85e-102	323
Msa0312590	MtrunA17_Chr8g0358781	51.379	290	138	1	37	326	333	619	1.58e-99	309
Msa0312590	MtrunA17_Chr5g0443531	51.057	331	156	4	37	365	665	991	2.92e-98	313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312590	AT3G09010.1	56.805	338	140	3	1	336	1	334	3.72e-141	406
Msa0312590	AT1G16670.1	47.774	337	167	4	4	337	2	332	1.53e-112	333
Msa0312590	AT3G09010.2	57.303	267	109	2	1	266	1	263	1.12e-108	321
Msa0312590	AT1G56120.3	49.231	325	156	3	10	334	511	826	6.03e-104	326
Msa0312590	AT1G56120.2	49.231	325	156	3	10	334	659	974	8.87e-103	326
Msa0312590	AT1G56120.1	49.231	325	156	3	10	334	677	992	1.35e-102	326
Msa0312590	AT1G56145.3	51.007	298	143	2	37	334	572	866	1.05e-100	318
Msa0312590	AT1G56130.3	48.447	322	158	2	6	327	458	771	1.61e-100	316
Msa0312590	AT1G56145.1	51.007	298	143	2	37	334	675	969	6.56e-100	318
Msa0312590	AT1G56130.1	48.447	322	158	2	6	327	509	822	7.37e-100	315

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Find 94 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCTGATTATATTTC+TGG	0.088860	2_4:-7744803	Msa0312590:CDS
AAAGACTTTAATCCGAAAAT+AGG	0.315756	2_4:-7743635	Msa0312590:CDS
AAAGCAGCCACACCTCATAA+TGG	0.508574	2_4:+7744856	None:intergenic
AAAGCAGCTCAAGGACAAAC+TGG	0.379849	2_4:-7743356	Msa0312590:CDS
AAATGCCTAATATTATCTAA+AGG	0.554112	2_4:+7744610	None:intergenic
AACAAGACCATTATGAGGTG+TGG	0.605404	2_4:-7744863	Msa0312590:exon
AACATAACTTCTAGATACTG+AGG	0.630270	2_4:-7742599	Msa0312590:three_prime_UTR
AACCTACATACTGCATTACT+TGG	0.487327	2_4:-7743905	Msa0312590:intron
AACTTCATGAAGACGAGAAA+TGG	0.430934	2_4:-7743150	Msa0312590:CDS
AAGAAGACCGTTGATGACTC+AGG	0.556653	2_4:-7743032	Msa0312590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACCAGAAATATAATCAGA+AGG	+	chr2_4:7742671-7742690	None:intergenic	30.0%
TTCTGATAAAGAATTGAGCT+TGG	-	chr2_4:7742881-7742900	Msa0312590:CDS	30.0%
ATTTAGGCAATAAGATAGGA+AGG	-	chr2_4:7742919-7742938	Msa0312590:CDS	30.0%
TTTAGGCAATAAGATAGGAA+GGG	-	chr2_4:7742920-7742939	Msa0312590:CDS	30.0%
ACATTCAAACCTTGTTGAAT+TGG	-	chr2_4:7743481-7743500	Msa0312590:intron	30.0%
TCATATACTACAGTACGATT+AGG	+	chr2_4:7743527-7743546	None:intergenic	30.0%
GAAAGATCAACTATTTGCAT+CGG	-	chr2_4:7743722-7743741	Msa0312590:CDS	30.0%
AATATACACATACGTTGTTC+CGG	+	chr2_4:7743918-7743937	None:intergenic	30.0%
TTATTTCAACAGTGGTTACT+TGG	-	chr2_4:7744002-7744021	Msa0312590:CDS	30.0%
GATGATTATGTGTTCTTAAC+AGG	-	chr2_4:7744289-7744308	Msa0312590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	7742473	7745017	7742473	ID=Msa0312590;Name=Msa0312590
chr2_4	mRNA	7742473	7745017	7742473	ID=Msa0312590-mRNA-1;Parent=Msa0312590;Name=Msa0312590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=144\|1\|1\|1\|1\|1\|6\|389\|370
chr2_4	exon	7742473	7743179	7742473	ID=Msa0312590-mRNA-1:exon:3000;Parent=Msa0312590-mRNA-1
chr2_4	exon	7743326	7743476	7743326	ID=Msa0312590-mRNA-1:exon:2999;Parent=Msa0312590-mRNA-1
chr2_4	exon	7743566	7743803	7743566	ID=Msa0312590-mRNA-1:exon:2998;Parent=Msa0312590-mRNA-1
chr2_4	exon	7743906	7744116	7743906	ID=Msa0312590-mRNA-1:exon:2997;Parent=Msa0312590-mRNA-1
chr2_4	exon	7744525	7744637	7744525	ID=Msa0312590-mRNA-1:exon:2996;Parent=Msa0312590-mRNA-1
chr2_4	exon	7744792	7745017	7744792	ID=Msa0312590-mRNA-1:exon:2995;Parent=Msa0312590-mRNA-1
chr2_4	five_prime_UTR	7744874	7745017	7744874	ID=Msa0312590-mRNA-1:five_prime_utr;Parent=Msa0312590-mRNA-1
chr2_4	CDS	7744792	7744873	7744792	ID=Msa0312590-mRNA-1:cds;Parent=Msa0312590-mRNA-1
chr2_4	CDS	7744525	7744637	7744525	ID=Msa0312590-mRNA-1:cds;Parent=Msa0312590-mRNA-1
chr2_4	CDS	7743906	7744116	7743906	ID=Msa0312590-mRNA-1:cds;Parent=Msa0312590-mRNA-1
chr2_4	CDS	7743566	7743803	7743566	ID=Msa0312590-mRNA-1:cds;Parent=Msa0312590-mRNA-1
chr2_4	CDS	7743326	7743476	7743326	ID=Msa0312590-mRNA-1:cds;Parent=Msa0312590-mRNA-1
chr2_4	CDS	7742862	7743179	7742862	ID=Msa0312590-mRNA-1:cds;Parent=Msa0312590-mRNA-1
chr2_4	three_prime_UTR	7742473	7742861	7742473	ID=Msa0312590-mRNA-1:three_prime_utr;Parent=Msa0312590-mRNA-1

Gene Sequence

>Msa0312590

ATGAGGTGTGGCTGCTTTGGAGCATCTAGAACTAGAAAGAAGGAAAGTAAACCTTCTGATTATATTTCTGGTGAAATTGAAGGTTATCCTTTAGATAATATTAGGCATTTTTCTGATAAAGAATTGAGCTTGGCAACTGATAATTATCATTTAGGCAATAAGATAGGAAGGGGAGGCTTTGGAACTGTTTACCAGGGAACATTAAAAGATGGAAGAAAGATAGCAGTGAAGCCTCTTTCTGTTGGATCAAAGCAGGGAGTTCGCGAATTTTTGACTGAAATTAAAACCTTATCAAATGTTAAACATTCAAACCTTGTTGAATTGGTTGGATTCTGCATTCAAGGACCTAATCGTACTGTAGTATATGAGTATGTTGAAAATGGCAACCTACATACTGCATTACTTGGCAAAAAGAGTTTAAGCGTCAAGATGAAGTGGAGAGAAAGATCAACTATTTGCATCGGTACCGCGAAGGGTCTTGCATATCTTCATGAAGAGCTTGCACAACATATTGTACATAGAGACATCAAAGCTAGCAATGTGCTACTTGACAAAGACTTTAATCCGAAAATAGGTGATTTTGGGATGGCCAAATTATTTCCAGATGATATCACTCACATCAGCACAAGAATTGCCGGAACAACTGGTTACTTGGCACCAGAATATGCATTAGGTGGACAGTTAACCAAGAAGGCTGATGTATACAGTTTTGGAGTTCTTATACTTGAAATAATAAGTGGTAAAAGCAGCTCAAGGACAAACTGGGATGGATCACATAAATCCCTTCTAGAATGGGCATGGCAACTTCATGAAGACGAGAAATGGTTGGAGCTAGTAGATCCGGAGATGGAAGAATTTCCTGAGAAAGAGATAATCAAGTACATTAAGGTTGCCCTTTTCTGCACACAAGCTGCAGCAAGAAGAAGACCGTTGATGACTCAGGTTGTGGATATGCTCTCAAAGGAAATTCAGCTCAATGATAAACAACTAACAGCACCAGGATTGTTCAATTATGATGCAGGAGAAACTTCTCAGAAGAAATCAAATCCTGAATCTTTAGTTTATCACACTAGTTCTACTCAGCCTAGTATTACCGAGGTTACAGCTAGGTGA

Protein sequence

>Msa0312590

MRCGCFGASRTRKKESKPSDYISGEIEGYPLDNIRHFSDKELSLATDNYHLGNKIGRGGFGTVYQGTLKDGRKIAVKPLSVGSKQGVREFLTEIKTLSNVKHSNLVELVGFCIQGPNRTVVYEYVENGNLHTALLGKKSLSVKMKWRERSTICIGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSRTNWDGSHKSLLEWAWQLHEDEKWLELVDPEMEEFPEKEIIKYIKVALFCTQAAARRRPLMTQVVDMLSKEIQLNDKQLTAPGLFNYDAGETSQKKSNPESLVYHTSSTQPSITEVTAR*