AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1301610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1301610 MtrunA17_Chr4g0065081 96.281 242 9 0 2 243 4 245 3.25e-174 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1301610 AT2G47910.1 64.435 239 75 3 10 238 7 245 2.22e-110 318
Msa1301610 AT2G47910.2 73.333 180 45 1 62 238 18 197 8.86e-99 286

Find 90 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATAGTCCTACAATTTC+AGG 0.123360 8_3:-63722826 None:intergenic
GAAACTGTATTAACCGTTTC+TGG 0.145020 8_3:+63720986 Msa1301610:five_prime_UTR
TTCACTCATGAATATAAATT+TGG 0.163140 8_3:+63723390 Msa1301610:three_prime_UTR
TATGCTAAGGATTTCTTTAT+TGG 0.192732 8_3:+63723297 Msa1301610:three_prime_UTR
CATACATTGGATCATATATT+AGG 0.194530 8_3:-63723151 None:intergenic
ACAATTTCAGGAATCAATTT+AGG 0.211821 8_3:-63722814 None:intergenic
CATTCCCAAACCTGAATTAA+AGG 0.229005 8_3:+63722702 Msa1301610:CDS
CCACGTTGATGACGAGAAAT+TGG 0.265812 8_3:-63721128 None:intergenic
GTTGCAGATGAATATGAAAA+TGG 0.279549 8_3:+63722597 Msa1301610:intron
GAAGCAATGGTTTGAATCTA+AGG 0.288992 8_3:-63721046 None:intergenic
ATGGCAAGAATGCTTGGTTT+TGG 0.299846 8_3:+63722733 Msa1301610:CDS
CTATATTCCAAAACGATCTA+TGG 0.300602 8_3:-63723006 None:intergenic
TGAATTAAAGGCAAATAATA+TGG 0.311105 8_3:+63722714 Msa1301610:CDS
AGAGGGGAAGTGGTTTGTTT+TGG 0.313531 8_3:-63721086 None:intergenic
ATATTATTTGCCTTTAATTC+AGG 0.322155 8_3:-63722712 None:intergenic
TTTGCCTTTAATTCAGGTTT+GGG 0.337376 8_3:-63722706 None:intergenic
ACTCTCCGATCTATCATAGA+AGG 0.340744 8_3:+63723091 Msa1301610:three_prime_UTR
ATTTGCCTTTAATTCAGGTT+TGG 0.341208 8_3:-63722707 None:intergenic
AAAGTGTAGAAACAAATTAA+TGG 0.343866 8_3:+63721016 Msa1301610:exon
TTGCGATCCATAGATCGTTT+TGG 0.361984 8_3:+63722999 Msa1301610:three_prime_UTR
GAATTTCTTGAGCGCTCAAT+TGG 0.362235 8_3:+63722131 Msa1301610:CDS
AGTATCCTGATATTAGACTA+TGG 0.405584 8_3:+63722207 Msa1301610:CDS
ACAAACCATAGTCTAATATC+AGG 0.408448 8_3:-63722212 None:intergenic
AGGGAAAAGCATGAAGTTAG+AGG 0.409056 8_3:-63721104 None:intergenic
TGTCCCTTGTTCGTATTTGT+AGG 0.410546 8_3:+63722912 Msa1301610:three_prime_UTR
ATACATTGGATCATATATTA+GGG 0.410650 8_3:-63723150 None:intergenic
TTTGAAATATCAATAATGTA+AGG 0.411573 8_3:-63722855 None:intergenic
ATGCCAGTTGCAGCTTGAAA+AGG 0.412295 8_3:-63721973 None:intergenic
GATACAACCCTACAACTTCA+AGG 0.417218 8_3:+63723051 Msa1301610:three_prime_UTR
AATGTATGTCGAAGTGTATC+AGG 0.419732 8_3:+63723166 Msa1301610:three_prime_UTR
GCTCTCCAATCCAATAAAAC+TGG 0.419972 8_3:-63722263 None:intergenic
AAATTGATTCCTGAAATTGT+AGG 0.420619 8_3:+63722817 Msa1301610:three_prime_UTR
TGCCAGTTGCAGCTTGAAAA+GGG 0.422401 8_3:-63721972 None:intergenic
ATGATTTGCGTACCAGATAA+GGG 0.429757 8_3:-63722003 None:intergenic
AATAATATGGCAAGAATGCT+TGG 0.429980 8_3:+63722727 Msa1301610:CDS
AATGATTTGCGTACCAGATA+AGG 0.441596 8_3:-63722004 None:intergenic
TGCTATGTTAGTTCCGCATC+AGG 0.443793 8_3:+63722307 Msa1301610:CDS
GTCCCTTGTTCGTATTTGTA+GGG 0.445451 8_3:+63722913 Msa1301610:three_prime_UTR
GAAGTTTCCTTGTGGGTTGA+AGG 0.453295 8_3:-63721171 None:intergenic
TGGAATATAGATAATATATG+AGG 0.454585 8_3:+63723019 Msa1301610:three_prime_UTR
GTCTCTTTATTTGATGATGA+TGG 0.456703 8_3:+63721197 Msa1301610:CDS
GCATGAAGTTAGAGGGGAAG+TGG 0.457683 8_3:-63721096 None:intergenic
GGAATTGAAAACAAATAAAG+AGG 0.467012 8_3:+63723411 Msa1301610:three_prime_UTR
TCGAATCGGCCTTCAGTTGG+AGG 0.473327 8_3:-63721907 None:intergenic
ATCTTGTCGTGTATAGTTGA+TGG 0.474003 8_3:-63722159 None:intergenic
TCCAATAAAACTGGCAACCA+TGG 0.487310 8_3:-63722254 None:intergenic
ACAAACAGTTCCAATGCCTC+TGG 0.491209 8_3:-63722634 None:intergenic
GACTTGATGCTGCTTATCCA+TGG 0.492069 8_3:+63722237 Msa1301610:CDS
ACAACTTCAAGGACAAAACT+TGG 0.492128 8_3:+63723062 Msa1301610:three_prime_UTR
GGACTAGAATGATATTAAGT+TGG 0.492269 8_3:+63722934 Msa1301610:three_prime_UTR
CGGCCTTCAGTTGGAGGCAT+AGG 0.503641 8_3:-63721901 None:intergenic
TATTCGTGATAGATAACATA+AGG 0.506430 8_3:+63720933 Msa1301610:five_prime_UTR
ATATTAAGTTGGCAATATCA+TGG 0.507570 8_3:+63722945 Msa1301610:three_prime_UTR
GGTATTTACTCTAGATCAAG+TGG 0.510971 8_3:-63722793 None:intergenic
TATCAATTACAACTTCGAAT+CGG 0.519861 8_3:-63721921 None:intergenic
AGACATCGAAGTTTCCTTGT+GGG 0.528434 8_3:-63721178 None:intergenic
ACTTCGAATCGGCCTTCAGT+TGG 0.531614 8_3:-63721910 None:intergenic
TTGAAATATCAATAATGTAA+GGG 0.532341 8_3:-63722854 None:intergenic
TTTGGCAAAGGAGATGAAAG+TGG 0.539719 8_3:-63721068 None:intergenic
GGGAAAAGCATGAAGTTAGA+GGG 0.542061 8_3:-63721103 None:intergenic
CCTTCAGTTGGAGGCATAGG+AGG 0.545720 8_3:-63721898 None:intergenic
TTGCAGATGAATATGAAAAT+GGG 0.546953 8_3:+63722598 Msa1301610:intron
GGAATATAGATAATATATGA+GGG 0.554599 8_3:+63723020 Msa1301610:three_prime_UTR
TGATACACTTCGACATACAT+TGG 0.558435 8_3:-63723164 None:intergenic
GGAGATGAAAGTGGAAGCAA+TGG 0.564876 8_3:-63721059 None:intergenic
GGAGAGCTGGAGAGCTAGCT+CGG 0.572069 8_3:+63722279 Msa1301610:CDS
TTGATGAAAGTAATATGCTA+AGG 0.572482 8_3:+63723284 Msa1301610:three_prime_UTR
ATTTATTGTATTACCTGATG+CGG 0.574151 8_3:-63722320 None:intergenic
GGAAAAGCATGAAGTTAGAG+GGG 0.574365 8_3:-63721102 None:intergenic
GATACCCTTCTATGATAGAT+CGG 0.575721 8_3:-63723096 None:intergenic
AGGGTACTAATGTGTCAAGC+TGG 0.576485 8_3:-63723131 None:intergenic
CTCTCCGATCTATCATAGAA+GGG 0.591302 8_3:+63723092 Msa1301610:three_prime_UTR
CCTCCTATGCCTCCAACTGA+AGG 0.594495 8_3:+63721898 Msa1301610:CDS
GTTGATGACGAGAAATTGGA+AGG 0.599353 8_3:-63721124 None:intergenic
AAGCAATGGTTTGAATCTAA+GGG 0.607333 8_3:-63721045 None:intergenic
GCCAGTTGCAGCTTGAAAAG+GGG 0.608468 8_3:-63721971 None:intergenic
GAGACATCGAAGTTTCCTTG+TGG 0.622426 8_3:-63721179 None:intergenic
AGTCCCTACAAATACGAACA+AGG 0.624880 8_3:-63722916 None:intergenic
CTTGAAAAGGGGTTAAGTCA+AGG 0.630683 8_3:-63721960 None:intergenic
GAGCGCTCAAGAAATTCTTG+TGG 0.636416 8_3:-63722125 None:intergenic
TGAGATTAGCAGAACACAAG+GGG 0.638632 8_3:+63723222 Msa1301610:three_prime_UTR
TTGATGACGAGAAATTGGAA+GGG 0.641000 8_3:-63721123 None:intergenic
GGATACTCTGATAATTCTCG+AGG 0.647549 8_3:-63722191 None:intergenic
ACATGAACATTGCATACAGT+AGG 0.650769 8_3:-63723329 None:intergenic
GTCCCTACAAATACGAACAA+GGG 0.653485 8_3:-63722915 None:intergenic
TCTGTTGCCTTCAACCCACA+AGG 0.654997 8_3:+63721164 Msa1301610:CDS
CCAATTTCTCGTCATCAACG+TGG 0.655284 8_3:+63721128 Msa1301610:CDS
ATGAGATTAGCAGAACACAA+GGG 0.665939 8_3:+63723221 Msa1301610:three_prime_UTR
AATGAGATTAGCAGAACACA+AGG 0.675247 8_3:+63723220 Msa1301610:three_prime_UTR
GAGATTAGCAGAACACAAGG+GGG 0.749727 8_3:+63723223 Msa1301610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATTATACTAAACAA+TGG + chr8_3:63721850-63721869 Msa1301610:intron 10.0%
!! ATGACAAATGATATAAAAAA+AGG - chr8_3:63721245-63721264 None:intergenic 15.0%
!!! AAGTTTTTATTGTATATTCA+TGG + chr8_3:63722665-63722684 Msa1301610:CDS 15.0%
!! TTGAAATATCAATAATGTAA+GGG - chr8_3:63722857-63722876 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr8_3:63722858-63722877 None:intergenic 15.0%
!! AAAGTGTAGAAACAAATTAA+TGG + chr8_3:63721016-63721035 Msa1301610:exon 20.0%
!!! TTGAATTTTATTCCTGTATT+TGG + chr8_3:63721364-63721383 Msa1301610:intron 20.0%
!! TTAGATAAAAGTCTTCAAAT+TGG - chr8_3:63721425-63721444 None:intergenic 20.0%
!!! AAAAGATTAGTTCATTATGT+GGG + chr8_3:63721587-63721606 Msa1301610:intron 20.0%
!!! TGTACTAACTTTTACAATAA+AGG - chr8_3:63721674-63721693 None:intergenic 20.0%
!!! TGTCTTAATTGCTTTAATTT+TGG + chr8_3:63722040-63722059 Msa1301610:intron 20.0%
!!! AGTACTATGGTTTTAAATTA+CGG + chr8_3:63722361-63722380 Msa1301610:intron 20.0%
!! TACTTTATATAGGAAATAAG+AGG + chr8_3:63722535-63722554 Msa1301610:intron 20.0%
!! ACTTTATATAGGAAATAAGA+GGG + chr8_3:63722536-63722555 Msa1301610:intron 20.0%
!! ATATTATTTGCCTTTAATTC+AGG - chr8_3:63722715-63722734 None:intergenic 20.0%
!! TGAATTAAAGGCAAATAATA+TGG + chr8_3:63722714-63722733 Msa1301610:CDS 20.0%
!! TGGAATATAGATAATATATG+AGG + chr8_3:63723019-63723038 Msa1301610:three_prime_UTR 20.0%
!! GGAATATAGATAATATATGA+GGG + chr8_3:63723020-63723039 Msa1301610:three_prime_UTR 20.0%
!! ATACATTGGATCATATATTA+GGG - chr8_3:63723153-63723172 None:intergenic 20.0%
!! TTCACTCATGAATATAAATT+TGG + chr8_3:63723390-63723409 Msa1301610:three_prime_UTR 20.0%
! TATTCGTGATAGATAACATA+AGG + chr8_3:63720933-63720952 Msa1301610:five_prime_UTR 25.0%
! TACTATAGTGTTAGATATGT+TGG + chr8_3:63721329-63721348 Msa1301610:intron 25.0%
! ATTAAGTCATAAGGTATGTT+GGG - chr8_3:63721401-63721420 None:intergenic 25.0%
! TATTAAGTCATAAGGTATGT+TGG - chr8_3:63721402-63721421 None:intergenic 25.0%
! CAAATTGGTATTAAGTCATA+AGG - chr8_3:63721410-63721429 None:intergenic 25.0%
!! TGAAGACTTTTATCTAAATG+TGG + chr8_3:63721428-63721447 Msa1301610:intron 25.0%
!! GAAGACTTTTATCTAAATGT+GGG + chr8_3:63721429-63721448 Msa1301610:intron 25.0%
! TAACAATTACGGATTTCATT+GGG - chr8_3:63721537-63721556 None:intergenic 25.0%
!! CAAAAGATTAGTTCATTATG+TGG + chr8_3:63721586-63721605 Msa1301610:intron 25.0%
!! TTTTACTACTGAGATAACTT+AGG - chr8_3:63721745-63721764 None:intergenic 25.0%
! TAATTCTCTCTGCATTTAAA+TGG + chr8_3:63721821-63721840 Msa1301610:intron 25.0%
! TATCAATTACAACTTCGAAT+CGG - chr8_3:63721924-63721943 None:intergenic 25.0%
! ATTTATTGTATTACCTGATG+CGG - chr8_3:63722323-63722342 None:intergenic 25.0%
!!! ACCTCTAAAATCTTTGTATT+AGG + chr8_3:63722471-63722490 Msa1301610:intron 25.0%
!!! CCTCTAAAATCTTTGTATTA+GGG + chr8_3:63722472-63722491 Msa1301610:intron 25.0%
! AACTCAGTAGTACTTTATAT+AGG + chr8_3:63722525-63722544 Msa1301610:intron 25.0%
! TTGCAGATGAATATGAAAAT+GGG + chr8_3:63722598-63722617 Msa1301610:intron 25.0%
! ACAATTTCAGGAATCAATTT+AGG - chr8_3:63722817-63722836 None:intergenic 25.0%
!! AAATTGATTCCTGAAATTGT+AGG + chr8_3:63722817-63722836 Msa1301610:three_prime_UTR 25.0%
!!! ATATTAAGTTGGCAATATCA+TGG + chr8_3:63722945-63722964 Msa1301610:three_prime_UTR 25.0%
! CATACATTGGATCATATATT+AGG - chr8_3:63723154-63723173 None:intergenic 25.0%
! TTGATGAAAGTAATATGCTA+AGG + chr8_3:63723284-63723303 Msa1301610:three_prime_UTR 25.0%
! TATGCTAAGGATTTCTTTAT+TGG + chr8_3:63723297-63723316 Msa1301610:three_prime_UTR 25.0%
! GGAATTGAAAACAAATAAAG+AGG + chr8_3:63723411-63723430 Msa1301610:three_prime_UTR 25.0%
AAGCAATGGTTTGAATCTAA+GGG - chr8_3:63721048-63721067 None:intergenic 30.0%
!! GTCTCTTTATTTGATGATGA+TGG + chr8_3:63721197-63721216 Msa1301610:CDS 30.0%
AGTACTTTAATTCAGCCTAT+AGG + chr8_3:63721489-63721508 Msa1301610:intron 30.0%
CTAACAATTACGGATTTCAT+TGG - chr8_3:63721538-63721557 None:intergenic 30.0%
CAATGAAATCCGTAATTGTT+AGG + chr8_3:63721536-63721555 Msa1301610:intron 30.0%
! TTGACTCAAAGTGTTAAAAG+TGG - chr8_3:63721721-63721740 None:intergenic 30.0%
AGTATCCTGATATTAGACTA+TGG + chr8_3:63722207-63722226 Msa1301610:CDS 30.0%
ACAAACCATAGTCTAATATC+AGG - chr8_3:63722215-63722234 None:intergenic 30.0%
TTTGTGTATGAGTAGTACTA+TGG + chr8_3:63722348-63722367 Msa1301610:intron 30.0%
!!! ATGGTTTTAAATTACGGTTG+TGG + chr8_3:63722367-63722386 Msa1301610:intron 30.0%
TTAAATTACGGTTGTGGTTA+TGG + chr8_3:63722373-63722392 Msa1301610:intron 30.0%
! CCCTAATACAAAGATTTTAG+AGG - chr8_3:63722475-63722494 None:intergenic 30.0%
GTTGCAGATGAATATGAAAA+TGG + chr8_3:63722597-63722616 Msa1301610:intron 30.0%
! TTTGCCTTTAATTCAGGTTT+GGG - chr8_3:63722709-63722728 None:intergenic 30.0%
! ATTTGCCTTTAATTCAGGTT+TGG - chr8_3:63722710-63722729 None:intergenic 30.0%
AATAATATGGCAAGAATGCT+TGG + chr8_3:63722727-63722746 Msa1301610:CDS 30.0%
! TTTGATAGTCCTACAATTTC+AGG - chr8_3:63722829-63722848 None:intergenic 30.0%
GGACTAGAATGATATTAAGT+TGG + chr8_3:63722934-63722953 Msa1301610:three_prime_UTR 30.0%
CTATATTCCAAAACGATCTA+TGG - chr8_3:63723009-63723028 None:intergenic 30.0%
GAAACTGTATTAACCGTTTC+TGG + chr8_3:63720986-63721005 Msa1301610:five_prime_UTR 35.0%
GAAGCAATGGTTTGAATCTA+AGG - chr8_3:63721049-63721068 None:intergenic 35.0%
!! TTGATGACGAGAAATTGGAA+GGG - chr8_3:63721126-63721145 None:intergenic 35.0%
! AGTGTTAGATATGTTGGTCT+TGG + chr8_3:63721335-63721354 Msa1301610:intron 35.0%
GCAAACATTCATCCAAATAC+AGG - chr8_3:63721379-63721398 None:intergenic 35.0%
!!! TAAATGTGGGTTTTTTAGCC+TGG + chr8_3:63721442-63721461 Msa1301610:intron 35.0%
AGCTTCAGTCCTAACAATTA+CGG - chr8_3:63721548-63721567 None:intergenic 35.0%
! ATGATTTGCGTACCAGATAA+GGG - chr8_3:63722006-63722025 None:intergenic 35.0%
! AATGATTTGCGTACCAGATA+AGG - chr8_3:63722007-63722026 None:intergenic 35.0%
AAATGAACTTAGATGCTTCC+TGG + chr8_3:63722080-63722099 Msa1301610:intron 35.0%
ACTGTAGTAATGATAACACC+AGG - chr8_3:63722101-63722120 None:intergenic 35.0%
ATCTTGTCGTGTATAGTTGA+TGG - chr8_3:63722162-63722181 None:intergenic 35.0%
!! TACTACTGAGTTCTGAATTG+TGG - chr8_3:63722517-63722536 None:intergenic 35.0%
!! TGTTTTTAATCCAGAGGCAT+TGG + chr8_3:63722624-63722643 Msa1301610:CDS 35.0%
CATTCCCAAACCTGAATTAA+AGG + chr8_3:63722702-63722721 Msa1301610:CDS 35.0%
!!! AGAATGCTTGGTTTTGGAAT+TGG + chr8_3:63722739-63722758 Msa1301610:CDS 35.0%
GGTATTTACTCTAGATCAAG+TGG - chr8_3:63722796-63722815 None:intergenic 35.0%
! GTTTTGTCCTTGAAGTTGTA+GGG - chr8_3:63723061-63723080 None:intergenic 35.0%
!! AGTTTTGTCCTTGAAGTTGT+AGG - chr8_3:63723062-63723081 None:intergenic 35.0%
ACAACTTCAAGGACAAAACT+TGG + chr8_3:63723062-63723081 Msa1301610:three_prime_UTR 35.0%
GATACCCTTCTATGATAGAT+CGG - chr8_3:63723099-63723118 None:intergenic 35.0%
TGATACACTTCGACATACAT+TGG - chr8_3:63723167-63723186 None:intergenic 35.0%
AATGTATGTCGAAGTGTATC+AGG + chr8_3:63723166-63723185 Msa1301610:three_prime_UTR 35.0%
AATGAGATTAGCAGAACACA+AGG + chr8_3:63723220-63723239 Msa1301610:three_prime_UTR 35.0%
ATGAGATTAGCAGAACACAA+GGG + chr8_3:63723221-63723240 Msa1301610:three_prime_UTR 35.0%
ACATGAACATTGCATACAGT+AGG - chr8_3:63723332-63723351 None:intergenic 35.0%
TTTGGCAAAGGAGATGAAAG+TGG - chr8_3:63721071-63721090 None:intergenic 40.0%
!!! GAAGTGGTTTGTTTTGGCAA+AGG - chr8_3:63721083-63721102 None:intergenic 40.0%
! GGAAAAGCATGAAGTTAGAG+GGG - chr8_3:63721105-63721124 None:intergenic 40.0%
! GGGAAAAGCATGAAGTTAGA+GGG - chr8_3:63721106-63721125 None:intergenic 40.0%
! AGGGAAAAGCATGAAGTTAG+AGG - chr8_3:63721107-63721126 None:intergenic 40.0%
!! GTTGATGACGAGAAATTGGA+AGG - chr8_3:63721127-63721146 None:intergenic 40.0%
AGACATCGAAGTTTCCTTGT+GGG - chr8_3:63721181-63721200 None:intergenic 40.0%
! ATTAAAGTACTCCACTCCAC+TGG - chr8_3:63721480-63721499 None:intergenic 40.0%
CCACAAAAATGGCTACCTAT+AGG - chr8_3:63721507-63721526 None:intergenic 40.0%
!!! CCTATAGGTAGCCATTTTTG+TGG + chr8_3:63721504-63721523 Msa1301610:intron 40.0%
CTTGAAAAGGGGTTAAGTCA+AGG - chr8_3:63721963-63721982 None:intergenic 40.0%
GGCATGAAAAATCCCTTATC+TGG + chr8_3:63721991-63722010 Msa1301610:CDS 40.0%
GAATTTCTTGAGCGCTCAAT+TGG + chr8_3:63722131-63722150 Msa1301610:CDS 40.0%
GGATACTCTGATAATTCTCG+AGG - chr8_3:63722194-63722213 None:intergenic 40.0%
!! TCCATGGTTGCCAGTTTTAT+TGG + chr8_3:63722253-63722272 Msa1301610:CDS 40.0%
TCCAATAAAACTGGCAACCA+TGG - chr8_3:63722257-63722276 None:intergenic 40.0%
!!! GGTTGCCAGTTTTATTGGAT+TGG + chr8_3:63722258-63722277 Msa1301610:CDS 40.0%
GCTCTCCAATCCAATAAAAC+TGG - chr8_3:63722266-63722285 None:intergenic 40.0%
!! GTTTTATTGGATTGGAGAGC+TGG + chr8_3:63722266-63722285 Msa1301610:CDS 40.0%
CGTTATCACAATCGCAATTG+TGG - chr8_3:63722443-63722462 None:intergenic 40.0%
!!! GGGAGTTGTTTTTAATCCAG+AGG + chr8_3:63722618-63722637 Msa1301610:CDS 40.0%
! ATGGCAAGAATGCTTGGTTT+TGG + chr8_3:63722733-63722752 Msa1301610:CDS 40.0%
TGTCCCTTGTTCGTATTTGT+AGG + chr8_3:63722912-63722931 Msa1301610:three_prime_UTR 40.0%
GTCCCTTGTTCGTATTTGTA+GGG + chr8_3:63722913-63722932 Msa1301610:three_prime_UTR 40.0%
GTCCCTACAAATACGAACAA+GGG - chr8_3:63722918-63722937 None:intergenic 40.0%
AGTCCCTACAAATACGAACA+AGG - chr8_3:63722919-63722938 None:intergenic 40.0%
! TTGCGATCCATAGATCGTTT+TGG + chr8_3:63722999-63723018 Msa1301610:three_prime_UTR 40.0%
GATACAACCCTACAACTTCA+AGG + chr8_3:63723051-63723070 Msa1301610:three_prime_UTR 40.0%
ACTCTCCGATCTATCATAGA+AGG + chr8_3:63723091-63723110 Msa1301610:three_prime_UTR 40.0%
CTCTCCGATCTATCATAGAA+GGG + chr8_3:63723092-63723111 Msa1301610:three_prime_UTR 40.0%
TGAGATTAGCAGAACACAAG+GGG + chr8_3:63723222-63723241 Msa1301610:three_prime_UTR 40.0%
! CACTTTTCAGCTGCCAGAAA+CGG - chr8_3:63721002-63721021 None:intergenic 45.0%
GGAGATGAAAGTGGAAGCAA+TGG - chr8_3:63721062-63721081 None:intergenic 45.0%
!!! AGAGGGGAAGTGGTTTGTTT+TGG - chr8_3:63721089-63721108 None:intergenic 45.0%
!! CCACGTTGATGACGAGAAAT+TGG - chr8_3:63721131-63721150 None:intergenic 45.0%
CCAATTTCTCGTCATCAACG+TGG + chr8_3:63721128-63721147 Msa1301610:CDS 45.0%
! GAAGTTTCCTTGTGGGTTGA+AGG - chr8_3:63721174-63721193 None:intergenic 45.0%
GAGACATCGAAGTTTCCTTG+TGG - chr8_3:63721182-63721201 None:intergenic 45.0%
!!! TGGGTTTTTTAGCCTGGACT+TGG + chr8_3:63721448-63721467 Msa1301610:intron 45.0%
!!! GTTTTTTAGCCTGGACTTGG+TGG + chr8_3:63721451-63721470 Msa1301610:intron 45.0%
TGGGAATCGTGCCACAAAAA+TGG - chr8_3:63721518-63721537 None:intergenic 45.0%
TGCCAGTTGCAGCTTGAAAA+GGG - chr8_3:63721975-63721994 None:intergenic 45.0%
ATGCCAGTTGCAGCTTGAAA+AGG - chr8_3:63721976-63721995 None:intergenic 45.0%
GAGCGCTCAAGAAATTCTTG+TGG - chr8_3:63722128-63722147 None:intergenic 45.0%
! GACTTGATGCTGCTTATCCA+TGG + chr8_3:63722237-63722256 Msa1301610:CDS 45.0%
TGCTATGTTAGTTCCGCATC+AGG + chr8_3:63722307-63722326 Msa1301610:CDS 45.0%
ACAAACAGTTCCAATGCCTC+TGG - chr8_3:63722637-63722656 None:intergenic 45.0%
! AGGGTACTAATGTGTCAAGC+TGG - chr8_3:63723134-63723153 None:intergenic 45.0%
GAGATTAGCAGAACACAAGG+GGG + chr8_3:63723223-63723242 Msa1301610:three_prime_UTR 45.0%
CACAAGGGGGTCATTAAGAA+CGG + chr8_3:63723236-63723255 Msa1301610:three_prime_UTR 45.0%
GCATGAAGTTAGAGGGGAAG+TGG - chr8_3:63721099-63721118 None:intergenic 50.0%
TCTGTTGCCTTCAACCCACA+AGG + chr8_3:63721164-63721183 Msa1301610:CDS 50.0%
ACTTCGAATCGGCCTTCAGT+TGG - chr8_3:63721913-63721932 None:intergenic 50.0%
!! ACCCCTTTTCAAGCTGCAAC+TGG + chr8_3:63721970-63721989 Msa1301610:CDS 50.0%
GCCAGTTGCAGCTTGAAAAG+GGG - chr8_3:63721974-63721993 None:intergenic 50.0%
GATAATTCTCGAGGATCGCG+AGG - chr8_3:63722185-63722204 None:intergenic 50.0%
AAGGGGGTCATTAAGAACGG+AGG + chr8_3:63723239-63723258 Msa1301610:three_prime_UTR 50.0%
CACTGGATACCACCAAGTCC+AGG - chr8_3:63721463-63721482 None:intergenic 55.0%
!! CTGGACTTGGTGGTATCCAG+TGG + chr8_3:63721461-63721480 Msa1301610:intron 55.0%
! CTTGGTGGTATCCAGTGGAG+TGG + chr8_3:63721466-63721485 Msa1301610:intron 55.0%
! CCTTCAGTTGGAGGCATAGG+AGG - chr8_3:63721901-63721920 None:intergenic 55.0%
CCTCCTATGCCTCCAACTGA+AGG + chr8_3:63721898-63721917 Msa1301610:CDS 55.0%
TCGAATCGGCCTTCAGTTGG+AGG - chr8_3:63721910-63721929 None:intergenic 55.0%
TAGGGCCGCAATTGCGATTG+CGG + chr8_3:63722490-63722509 Msa1301610:intron 55.0%
GTGGTCCGCAATCGCAATTG+CGG - chr8_3:63722498-63722517 None:intergenic 55.0%
! CGGCCTTCAGTTGGAGGCAT+AGG - chr8_3:63721904-63721923 None:intergenic 60.0%
GGAGAGCTGGAGAGCTAGCT+CGG + chr8_3:63722279-63722298 Msa1301610:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 63720921 63723453 63720921 ID=Msa1301610;Name=Msa1301610
chr8_3 mRNA 63720921 63723453 63720921 ID=Msa1301610-mRNA-1;Parent=Msa1301610;Name=Msa1301610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=114|1|1|1|1|1|4|643|243
chr8_3 exon 63720921 63721218 63720921 ID=Msa1301610-mRNA-1:exon:19096;Parent=Msa1301610-mRNA-1
chr8_3 exon 63721881 63722012 63721881 ID=Msa1301610-mRNA-1:exon:19097;Parent=Msa1301610-mRNA-1
chr8_3 exon 63722120 63722328 63722120 ID=Msa1301610-mRNA-1:exon:19098;Parent=Msa1301610-mRNA-1
chr8_3 exon 63722604 63723453 63722604 ID=Msa1301610-mRNA-1:exon:19099;Parent=Msa1301610-mRNA-1
chr8_3 five_prime_UTR 63720921 63721034 63720921 ID=Msa1301610-mRNA-1:five_prime_utr;Parent=Msa1301610-mRNA-1
chr8_3 CDS 63721035 63721218 63721035 ID=Msa1301610-mRNA-1:cds;Parent=Msa1301610-mRNA-1
chr8_3 CDS 63721881 63722012 63721881 ID=Msa1301610-mRNA-1:cds;Parent=Msa1301610-mRNA-1
chr8_3 CDS 63722120 63722328 63722120 ID=Msa1301610-mRNA-1:cds;Parent=Msa1301610-mRNA-1
chr8_3 CDS 63722604 63722810 63722604 ID=Msa1301610-mRNA-1:cds;Parent=Msa1301610-mRNA-1
chr8_3 three_prime_UTR 63722811 63723453 63722811 ID=Msa1301610-mRNA-1:three_prime_utr;Parent=Msa1301610-mRNA-1
Gene Sequence

>Msa1301610

ATGGCTACTACCCTTAGATTCAAACCATTGCTTCCACTTTCATCTCCTTTGCCAAAACAAACCACTTCCCCTCTAACTTCATGCTTTTCCCTTCCAATTTCTCGTCATCAACGTGGAAATGTTGCAGTCTCTGTTGCCTTCAACCCACAAGGAAACTTCGATGTCTCTTTATTTGATGATGATGATGAGTCTAAAGTTTCACCTCCTATGCCTCCAACTGAAGGCCGATTCGAAGTTGTAATTGATAATGATGCTATTAGTCGCCTTGACTTAACCCCTTTTCAAGCTGCAACTGGCATGAAAAATCCCTTATCTGTTGAACCACAAGAATTTCTTGAGCGCTCAATTGGATTTACCATCAACTATACACGACAAGATCCTCGCGATCCTCGAGAATTATCAGAGTATCCTGATATTAGACTATGGTTTGTTAGACTTGATGCTGCTTATCCATGGTTGCCAGTTTTATTGGATTGGAGAGCTGGAGAGCTAGCTCGGTATGCTGCTATGTTAGTTCCGCATCAGATGAATATGAAAATGGGAGTTGTTTTTAATCCAGAGGCATTGGAACTGTTTGTTATGAATAAAGTTTTTATTGTATATTCATGGTTGAAGCATCACAACATTCCCAAACCTGAATTAAAGGCAAATAATATGGCAAGAATGCTTGGTTTTGGAATTGGAAGTGAACTATACGACTTAGTTGAGAATCATCCACTTGATCTAGAGTAA

Protein sequence

>Msa1301610

MATTLRFKPLLPLSSPLPKQTTSPLTSCFSLPISRHQRGNVAVSVAFNPQGNFDVSLFDDDDESKVSPPMPPTEGRFEVVIDNDAISRLDLTPFQAATGMKNPLSVEPQEFLERSIGFTINYTRQDPRDPRELSEYPDIRLWFVRLDAAYPWLPVLLDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVMNKVFIVYSWLKHHNIPKPELKANNMARMLGFGIGSELYDLVENHPLDLE*