AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 88 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTGTTCTTCTGCTTCT+AGG 0.158404 5_1:+56228139 Msa0738460:three_prime_UTR
CAATAAATCGGATTGCAAAT+TGG 0.179236 5_1:-56227102 None:intergenic
AAATCTTGTATTGCTAAAAT+TGG 0.182331 5_1:+56230180 Msa0738460:three_prime_UTR
CAAGCTTAACTCCAAGGTTT+TGG 0.213368 5_1:-56227604 None:intergenic
TGACAATCTGAATTTGTTAA+AGG 0.219792 5_1:+56227511 Msa0738460:exon
TCATCAGATAGAGGTGAAAT+TGG 0.254028 5_1:-56230096 None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG 0.269455 5_1:-56228452 None:intergenic
CATTTGTTATAGGATAAATT+TGG 0.280363 5_1:+56226819 Msa0738460:intron
CTATCAACCCTCTTGTGATC+TGG 0.284156 5_1:+56228459 Msa0738460:three_prime_UTR
AATAAATCGGATTGCAAATT+GGG 0.290251 5_1:-56227101 None:intergenic
CTTGTTACTGCACTTATTAT+CGG 0.320323 5_1:+56227551 Msa0738460:three_prime_UTR
ACCCTCTTGTGATCTGGGCT+TGG 0.322194 5_1:+56228465 Msa0738460:three_prime_UTR
CCCTCTTGTGATCTGGGCTT+GGG 0.337951 5_1:+56228466 Msa0738460:three_prime_UTR
TGGTGGCAGATAGGCTCTTT+TGG 0.338317 5_1:+56228028 Msa0738460:intron
TGGTTTGGTGCTGCGTCTTT+TGG 0.348500 5_1:+56227041 Msa0738460:CDS
ATGACAAGTATATTGCTCTT+AGG 0.349778 5_1:+56230133 Msa0738460:three_prime_UTR
TATCAACCCTCTTGTGATCT+GGG 0.351252 5_1:+56228460 Msa0738460:three_prime_UTR
TCTGGTTGTAAAGTAGTTCT+TGG 0.370039 5_1:-56226906 None:intergenic
GCAGCTGCTGGACCAATTGC+CGG 0.374813 5_1:+56228106 Msa0738460:three_prime_UTR
TTGTTAAAGGATGGCCTACC+TGG 0.381827 5_1:+56227524 Msa0738460:three_prime_UTR
TTGTTACTGCACTTATTATC+GGG 0.385893 5_1:+56227552 Msa0738460:three_prime_UTR
CCAATTGCCGGATTTGCATT+GGG 0.393078 5_1:+56228118 Msa0738460:three_prime_UTR
ATAAATTTGGAGATGAATAC+AGG 0.402996 5_1:+56226832 Msa0738460:CDS
TTGCTCAAGATTGCAGCTGC+TGG 0.406860 5_1:+56228094 Msa0738460:three_prime_UTR
TGATACCTTTCTTCCCCATA+TGG 0.407032 5_1:-56228558 None:intergenic
AACAAGACCCAATGCAAATC+CGG 0.416938 5_1:-56228125 None:intergenic
ACCAATTGCCGGATTTGCAT+TGG 0.418392 5_1:+56228117 Msa0738460:three_prime_UTR
TTAATGATGTAGCTTTCTAC+TGG 0.420976 5_1:+56230043 Msa0738460:three_prime_UTR
CTTGTGATCTGGGCTTGGGC+AGG 0.421611 5_1:+56228470 Msa0738460:three_prime_UTR
CAGGCTTCAATTCGCTTCAC+AGG 0.436252 5_1:+56229985 Msa0738460:intron
CCCAATGCAAATCCGGCAAT+TGG 0.439644 5_1:-56228118 None:intergenic
TCCAGCGGGAATACTGTTGA+TGG 0.441942 5_1:-56228507 None:intergenic
TCCCGTACTTTGTTCCTAGC+TGG 0.456423 5_1:+56227630 Msa0738460:three_prime_UTR
GTACTTTGTTCCTAGCTGGC+AGG 0.463565 5_1:+56227634 Msa0738460:three_prime_UTR
CACACACCTAGTAAGGATCT+TGG 0.464479 5_1:-56226558 None:intergenic
CTTGGAACGACAACGGCCAC+TGG 0.467933 5_1:-56226888 None:intergenic
CAAAACCTTGGAGTTAAGCT+TGG 0.474152 5_1:+56227605 Msa0738460:three_prime_UTR
TCATTTCTAGCCGGCGGCAT+TGG 0.474891 5_1:+56228223 Msa0738460:three_prime_UTR
TTAGCTGTACCTGAGTGGTT+TGG 0.476022 5_1:+56227026 Msa0738460:intron
CTAGGGTGGAGTGCTATTCA+AGG 0.477217 5_1:+56226655 Msa0738460:intron
AAGTACGTACGAGTTGTCTC+TGG 0.478656 5_1:-56226924 None:intergenic
TTTCTAGTTGCCCAAAACCT+TGG 0.479583 5_1:+56227593 Msa0738460:three_prime_UTR
TACTGTTGATGGCATTGATA+AGG 0.481843 5_1:-56228496 None:intergenic
AGATAGGCACACACCTAGTA+AGG 0.482436 5_1:-56226565 None:intergenic
GCCACTGGCTTATCATCCTC+AGG 0.483050 5_1:-56226873 None:intergenic
TCAGTTATTTCATCAGATAG+AGG 0.484865 5_1:-56230105 None:intergenic
TGCCAGCTAGGAACAAAGTA+CGG 0.492497 5_1:-56227632 None:intergenic
ATTCCCGCTGGAGAAATTGA+TGG 0.493577 5_1:+56228518 Msa0738460:three_prime_UTR
CTTATATTCTTCTTGCAAAG+AGG 0.500793 5_1:+56230072 Msa0738460:three_prime_UTR
CGATAATAAGTGCAGTAACA+AGG 0.511270 5_1:-56227550 None:intergenic
ATTATCGGGGTACATGAACT+TGG 0.511624 5_1:+56227566 Msa0738460:three_prime_UTR
AGAGCAATATACTTGTCATC+AGG 0.512530 5_1:-56230129 None:intergenic
CATCCTCAGGATTGACCAGA+AGG 0.524656 5_1:-56226860 None:intergenic
TTTCCTTCTGGTCAATCCTG+AGG 0.527445 5_1:+56226857 Msa0738460:CDS
CCTCCATCAATTTCTCCAGC+GGG 0.528767 5_1:-56228521 None:intergenic
CTTGGTAACGTTCTCAAGGA+AGG 0.529950 5_1:+56228425 Msa0738460:three_prime_UTR
AATCTGAATTTGTTAAAGGA+TGG 0.531461 5_1:+56227515 Msa0738460:exon
TATCATACAACCTGCCAGCT+AGG 0.533569 5_1:-56227644 None:intergenic
ATACCTCCAAGTGACGGTAT+TGG 0.534054 5_1:+56228169 Msa0738460:three_prime_UTR
AGTGCAGTAACAAGGGCTCC+AGG 0.541596 5_1:-56227542 None:intergenic
GGGGACATTGCGAAGCAGTA+AGG 0.546571 5_1:-56227081 None:intergenic
GTTTCTTGGTAACGTTCTCA+AGG 0.553899 5_1:+56228421 Msa0738460:three_prime_UTR
CCCTCCATCAATTTCTCCAG+CGG 0.559231 5_1:-56228522 None:intergenic
GCCATCAACAGTATTCCCGC+TGG 0.575199 5_1:+56228506 Msa0738460:three_prime_UTR
GCCAGCTAGGAACAAAGTAC+GGG 0.582312 5_1:-56227631 None:intergenic
ACACCAATACCGTCACTTGG+AGG 0.583153 5_1:-56228172 None:intergenic
CACGAGTCATTTCTAGCCGG+CGG 0.588757 5_1:+56228217 Msa0738460:three_prime_UTR
TGTTACTGCACTTATTATCG+GGG 0.591294 5_1:+56227553 Msa0738460:three_prime_UTR
AACAAGCCAAGATCCTTACT+AGG 0.591934 5_1:+56226552 Msa0738460:five_prime_UTR
ACAACACCAATACCGTCACT+TGG 0.597252 5_1:-56228175 None:intergenic
GATAATAAGTGCAGTAACAA+GGG 0.601874 5_1:-56227549 None:intergenic
GGACTCCAAGCTTAACTCCA+AGG 0.609370 5_1:-56227610 None:intergenic
GCCCAAGCCCAGATCACAAG+AGG 0.612324 5_1:-56228467 None:intergenic
CCCGCTGGAGAAATTGATGG+AGG 0.614785 5_1:+56228521 Msa0738460:three_prime_UTR
ATATAGCTTACCAATGCCGC+CGG 0.616022 5_1:-56228233 None:intergenic
TTTCACGAGTCATTTCTAGC+CGG 0.617627 5_1:+56228214 Msa0738460:three_prime_UTR
CCGCTGGAGAAATTGATGGA+GGG 0.622971 5_1:+56228522 Msa0738460:three_prime_UTR
TAATGATGTAGCTTTCTACT+GGG 0.625802 5_1:+56230044 Msa0738460:three_prime_UTR
CAGTAACAAGGGCTCCAGGT+AGG 0.628013 5_1:-56227538 None:intergenic
TAGGGTGGAGTGCTATTCAA+GGG 0.635501 5_1:+56226656 Msa0738460:intron
TTTGTTATACCTCCAAGTGA+CGG 0.635773 5_1:+56228163 Msa0738460:three_prime_UTR
GACGCAGCACCAAACCACTC+AGG 0.637018 5_1:-56227035 None:intergenic
TCCTGAGGATGATAAGCCAG+TGG 0.661607 5_1:+56226872 Msa0738460:CDS
CTATTCAAGGGAAACCTGTG+AGG 0.664525 5_1:+56226668 Msa0738460:five_prime_UTR
ATAAATCGGATTGCAAATTG+GGG 0.665060 5_1:-56227100 None:intergenic
AGTAGTTCTTGGAACGACAA+CGG 0.680756 5_1:-56226895 None:intergenic
CCCAAGCCCAGATCACAAGA+GGG 0.683801 5_1:-56228466 None:intergenic
TATTCAAGGGAAACCTGTGA+GGG 0.696864 5_1:+56226669 Msa0738460:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTTTATATTTTATTGA+AGG - chr5_1:56227806-56227825 None:intergenic 10.0%
!! ATAAAATATAAACTATTCAA+AGG + chr5_1:56227809-56227828 Msa0738460:intron 10.0%
!!! TACAAATATATTGATCTTTT+AGG + chr5_1:56227299-56227318 Msa0738460:intron 15.0%
!! TTTACATGATATATATTAGA+TGG - chr5_1:56227771-56227790 None:intergenic 15.0%
!! TTCAAATTATCATTAAACTT+TGG - chr5_1:56228678-56228697 None:intergenic 15.0%
!! GTTTCTTAAATAATACTATT+AGG + chr5_1:56229777-56229796 Msa0738460:intron 15.0%
!! TAAGAAATGAAACAGAAATA+TGG - chr5_1:56226742-56226761 None:intergenic 20.0%
!! CAAATTTATCCTATAACAAA+TGG - chr5_1:56226821-56226840 None:intergenic 20.0%
!!! CATTTGTTATAGGATAAATT+TGG + chr5_1:56226819-56226838 Msa0738460:intron 20.0%
!!! TCTTTTTTATTTTCTACTCA+TGG + chr5_1:56226976-56226995 Msa0738460:intron 20.0%
!!! ATTCCTTCAAGTAAATTTTA+AGG + chr5_1:56227249-56227268 Msa0738460:intron 20.0%
!! TATCCTTAAAATTTACTTGA+AGG - chr5_1:56227255-56227274 None:intergenic 20.0%
!!! GAACATCAACAATAATATTT+TGG - chr5_1:56227479-56227498 None:intergenic 20.0%
!! GATGCATATAATAAACTTTA+GGG + chr5_1:56227831-56227850 Msa0738460:intron 20.0%
!! AGATTCAAATTGACAAAATT+TGG + chr5_1:56227910-56227929 Msa0738460:intron 20.0%
!!! AGAAATTTTGATGCTTAATT+TGG + chr5_1:56228008-56228027 Msa0738460:intron 20.0%
!!! TATTTTTTTGATCTTCACTT+AGG + chr5_1:56228592-56228611 Msa0738460:intron 20.0%
!!! TATAGTTTATTGTTATTGCT+TGG + chr5_1:56229097-56229116 Msa0738460:intron 20.0%
!!! ATTTAAAAACTTTTTGTGGA+GGG - chr5_1:56229669-56229688 None:intergenic 20.0%
!!! CAAGATTTAAAAACTTTTTG+TGG - chr5_1:56229673-56229692 None:intergenic 20.0%
!!! CACAAAAAGTTTTTAAATCT+TGG + chr5_1:56229671-56229690 Msa0738460:intron 20.0%
!!! AAAAAGTTTTTAAATCTTGG+TGG + chr5_1:56229674-56229693 Msa0738460:intron 20.0%
!! TATTAGGATATTTAATTGAG+TGG + chr5_1:56229793-56229812 Msa0738460:intron 20.0%
!! AAATCTTGTATTGCTAAAAT+TGG + chr5_1:56230180-56230199 Msa0738460:three_prime_UTR 20.0%
! AAACTAAATAGAGGAAAGAT+AGG - chr5_1:56226584-56226603 None:intergenic 25.0%
!!! ATTTGCATACCATTTGTTAT+AGG + chr5_1:56226809-56226828 Msa0738460:intron 25.0%
! ATAAATTTGGAGATGAATAC+AGG + chr5_1:56226832-56226851 Msa0738460:CDS 25.0%
! AATAAATCGGATTGCAAATT+GGG - chr5_1:56227104-56227123 None:intergenic 25.0%
! GAAAAATGCTCACAATAAAT+CGG - chr5_1:56227117-56227136 None:intergenic 25.0%
! TTCATACTCTATTATCTCTT+AGG + chr5_1:56227156-56227175 Msa0738460:intron 25.0%
! TCATACTCTATTATCTCTTA+GGG + chr5_1:56227157-56227176 Msa0738460:intron 25.0%
! AATATATTTGTACCCAAACA+TGG - chr5_1:56227291-56227310 None:intergenic 25.0%
!! AGGCTTTATGTTTATTTAAC+AGG + chr5_1:56227319-56227338 Msa0738460:intron 25.0%
! GTATGATTTATTCCTATGAA+AGG - chr5_1:56227394-56227413 None:intergenic 25.0%
!! CATATCATATATGCATTTTG+AGG + chr5_1:56227448-56227467 Msa0738460:intron 25.0%
!!! TGACAATCTGAATTTGTTAA+AGG + chr5_1:56227511-56227530 Msa0738460:exon 25.0%
!!! AATCTGAATTTGTTAAAGGA+TGG + chr5_1:56227515-56227534 Msa0738460:exon 25.0%
! GGATGCATATAATAAACTTT+AGG + chr5_1:56227830-56227849 Msa0738460:intron 25.0%
!! CATATAATAAACTTTAGGGA+TGG + chr5_1:56227835-56227854 Msa0738460:intron 25.0%
! AACCACCTAATTTAATGTTA+TGG + chr5_1:56227877-56227896 Msa0738460:intron 25.0%
! TTCCATAACATTAAATTAGG+TGG - chr5_1:56227882-56227901 None:intergenic 25.0%
! GCATTCCATAACATTAAATT+AGG - chr5_1:56227885-56227904 None:intergenic 25.0%
!!! AATTTTGATGCTTAATTTGG+TGG + chr5_1:56228011-56228030 Msa0738460:intron 25.0%
! TATTAAATGTGATGATTGAG+TGG - chr5_1:56228706-56228725 None:intergenic 25.0%
!! TGATTTTCCAGTTTCTTTTT+TGG + chr5_1:56228755-56228774 Msa0738460:intron 25.0%
! TTAATGTTGTGTATCTAAAG+AGG - chr5_1:56228863-56228882 None:intergenic 25.0%
! CAAAATAATAGCTCCAAATT+TGG + chr5_1:56228919-56228938 Msa0738460:intron 25.0%
!! CTTTGAATTGGATTCTAAAA+TGG - chr5_1:56228990-56229009 None:intergenic 25.0%
!! GATTTAAAAACTTTTTGTGG+AGG - chr5_1:56229670-56229689 None:intergenic 25.0%
! AAATGTATATTCATACATGC+AGG - chr5_1:56229838-56229857 None:intergenic 25.0%
! AAGGAAGACAATGATATAAA+TGG - chr5_1:56229923-56229942 None:intergenic 25.0%
! TTACACGTAAAAAGAAGTAA+AGG - chr5_1:56229942-56229961 None:intergenic 25.0%
! CTAACTTAAGTATATTTCAC+AGG + chr5_1:56229966-56229985 Msa0738460:intron 25.0%
GCATATGCAAAACTAAATAG+AGG - chr5_1:56226593-56226612 None:intergenic 30.0%
!!! TTAGTTTTGCATATGCTCAA+AGG + chr5_1:56226597-56226616 Msa0738460:intron 30.0%
! GTTCAGAAGTTATTTCAACA+TGG - chr5_1:56226784-56226803 None:intergenic 30.0%
ATAAATCGGATTGCAAATTG+GGG - chr5_1:56227103-56227122 None:intergenic 30.0%
CAATAAATCGGATTGCAAAT+TGG - chr5_1:56227105-56227124 None:intergenic 30.0%
CATACTCTATTATCTCTTAG+GGG + chr5_1:56227158-56227177 Msa0738460:intron 30.0%
TCCTAACAAATTCCATGTTT+GGG + chr5_1:56227276-56227295 Msa0738460:intron 30.0%
TGATTTATTCCTATGAAAGG+TGG - chr5_1:56227391-56227410 None:intergenic 30.0%
GATAATAAGTGCAGTAACAA+GGG - chr5_1:56227552-56227571 None:intergenic 30.0%
CTTGTTACTGCACTTATTAT+CGG + chr5_1:56227551-56227570 Msa0738460:three_prime_UTR 30.0%
TTGTTACTGCACTTATTATC+GGG + chr5_1:56227552-56227571 Msa0738460:three_prime_UTR 30.0%
ATTAGGTGGTTTGAAAAAAC+AGG - chr5_1:56227868-56227887 None:intergenic 30.0%
!!! TGGTATTGGTCAATTTGTTT+TGG + chr5_1:56227948-56227967 Msa0738460:intron 30.0%
TTTAAGCTTGCATTCATTTG+TGG + chr5_1:56228288-56228307 Msa0738460:intron 30.0%
!! GTTTTAGCAAAACTGTTTCT+TGG + chr5_1:56228407-56228426 Msa0738460:intron 30.0%
! GAGAATTTCTTTTGCCATAT+GGG + chr5_1:56228544-56228563 Msa0738460:three_prime_UTR 30.0%
! AGAATTTCTTTTGCCATATG+GGG + chr5_1:56228545-56228564 Msa0738460:three_prime_UTR 30.0%
! TTTTGATCTTCACTTAGGTT+TGG + chr5_1:56228597-56228616 Msa0738460:intron 30.0%
ATCTCAAATGAAACAACCAT+TGG - chr5_1:56228623-56228642 None:intergenic 30.0%
!!! TTTCCAGTTTCTTTTTTGGA+CGG + chr5_1:56228759-56228778 Msa0738460:intron 30.0%
CAAGTGAATGAAACCAAATT+TGG - chr5_1:56228935-56228954 None:intergenic 30.0%
TATGGTTATAATACCATCCA+CGG + chr5_1:56228957-56228976 Msa0738460:intron 30.0%
!! TGAATTGGATTCTAAAATGG+TGG - chr5_1:56228987-56229006 None:intergenic 30.0%
GCATAATGTCATCTTTGAAT+TGG - chr5_1:56229002-56229021 None:intergenic 30.0%
! CAAGCTTTTGATGTTCATAA+AGG - chr5_1:56229076-56229095 None:intergenic 30.0%
CTTTATGAACATCAAAAGCT+TGG + chr5_1:56229074-56229093 Msa0738460:intron 30.0%
! CTATGGTTCTATATAGTCTA+TGG - chr5_1:56229394-56229413 None:intergenic 30.0%
TGGAATAACACTCAATAATC+TGG - chr5_1:56229417-56229436 None:intergenic 30.0%
GAAAAATGGTGGCTAAAATA+TGG - chr5_1:56229517-56229536 None:intergenic 30.0%
AGTTATGAGTGCTTATGAAA+AGG - chr5_1:56229702-56229721 None:intergenic 30.0%
CATAACTGTAAATGTCCAAT+TGG + chr5_1:56229715-56229734 Msa0738460:intron 30.0%
TTAATGATGTAGCTTTCTAC+TGG + chr5_1:56230043-56230062 Msa0738460:three_prime_UTR 30.0%
TAATGATGTAGCTTTCTACT+GGG + chr5_1:56230044-56230063 Msa0738460:three_prime_UTR 30.0%
CTTATATTCTTCTTGCAAAG+AGG + chr5_1:56230072-56230091 Msa0738460:three_prime_UTR 30.0%
! TCAGTTATTTCATCAGATAG+AGG - chr5_1:56230108-56230127 None:intergenic 30.0%
ATGACAAGTATATTGCTCTT+AGG + chr5_1:56230133-56230152 Msa0738460:three_prime_UTR 30.0%
TCTGGTTGTAAAGTAGTTCT+TGG - chr5_1:56226909-56226928 None:intergenic 35.0%
ACTTAACTCCTTCGAAATTG+TGG + chr5_1:56226943-56226962 Msa0738460:intron 35.0%
ACAATGATCCACAATTTCGA+AGG - chr5_1:56226954-56226973 None:intergenic 35.0%
GAGTATGAAGTGACAAGAAA+AGG - chr5_1:56227145-56227164 None:intergenic 35.0%
! CCACATGACAATGTTTTGTA+GGG - chr5_1:56227194-56227213 None:intergenic 35.0%
! ACCACATGACAATGTTTTGT+AGG - chr5_1:56227195-56227214 None:intergenic 35.0%
GTCCTAACAAATTCCATGTT+TGG + chr5_1:56227275-56227294 Msa0738460:intron 35.0%
! ACCCAAACATGGAATTTGTT+AGG - chr5_1:56227280-56227299 None:intergenic 35.0%
AATTCTGTTCCACCTTTCAT+AGG + chr5_1:56227379-56227398 Msa0738460:intron 35.0%
CGATAATAAGTGCAGTAACA+AGG - chr5_1:56227553-56227572 None:intergenic 35.0%
TGTTACTGCACTTATTATCG+GGG + chr5_1:56227553-56227572 Msa0738460:three_prime_UTR 35.0%
! AAGCTTAACTCCAAGGTTTT+GGG - chr5_1:56227606-56227625 None:intergenic 35.0%
!!! GCTCTTTTGGTTCAATTACA+AGG + chr5_1:56228041-56228060 Msa0738460:three_prime_UTR 35.0%
! TTTGTTATACCTCCAAGTGA+CGG + chr5_1:56228163-56228182 Msa0738460:three_prime_UTR 35.0%
!! ACAAGAGGGTTGATAGAAAT+TGG - chr5_1:56228455-56228474 None:intergenic 35.0%
!! TACTGTTGATGGCATTGATA+AGG - chr5_1:56228499-56228518 None:intergenic 35.0%
! GGAGAATTTCTTTTGCCATA+TGG + chr5_1:56228543-56228562 Msa0738460:three_prime_UTR 35.0%
TTTCCGTCCAAAAAAGAAAC+TGG - chr5_1:56228765-56228784 None:intergenic 35.0%
TGGTTTCATTCACTTGAGTA+TGG + chr5_1:56228939-56228958 Msa0738460:intron 35.0%
!! ATTGGATTCTAAAATGGTGG+TGG - chr5_1:56228984-56229003 None:intergenic 35.0%
! TGGTTCTATATAGTCTATGG+CGG - chr5_1:56229391-56229410 None:intergenic 35.0%
AACACTCAATAATCTGGCTA+TGG - chr5_1:56229411-56229430 None:intergenic 35.0%
! AAAACCATATTTTTCGCTGC+AGG - chr5_1:56229442-56229461 None:intergenic 35.0%
TAGGACAAGTTAAGGAAAAG+AGG + chr5_1:56229542-56229561 Msa0738460:intron 35.0%
AAACAAGAGTGAGAGACAAA+GGG - chr5_1:56229622-56229641 None:intergenic 35.0%
AAAACAAGAGTGAGAGACAA+AGG - chr5_1:56229623-56229642 None:intergenic 35.0%
AACTGTAAATGTCCAATTGG+AGG + chr5_1:56229718-56229737 Msa0738460:intron 35.0%
CTCGAGAGGATAAAAGAATT+TGG - chr5_1:56229751-56229770 None:intergenic 35.0%
TCATCAGATAGAGGTGAAAT+TGG - chr5_1:56230099-56230118 None:intergenic 35.0%
AGAGCAATATACTTGTCATC+AGG - chr5_1:56230132-56230151 None:intergenic 35.0%
! GGCTTGAAAATTTTCATCAC+TGG + chr5_1:56230154-56230173 Msa0738460:three_prime_UTR 35.0%
AACAAGCCAAGATCCTTACT+AGG + chr5_1:56226552-56226571 Msa0738460:five_prime_UTR 40.0%
!! AGGTCTTGTTGCATGAAGAT+TGG + chr5_1:56226617-56226636 Msa0738460:intron 40.0%
!! GGTCTTGTTGCATGAAGATT+GGG + chr5_1:56226618-56226637 Msa0738460:intron 40.0%
TATTCAAGGGAAACCTGTGA+GGG + chr5_1:56226669-56226688 Msa0738460:five_prime_UTR 40.0%
! TGAATACAGGCTTTTCCTTC+TGG + chr5_1:56226845-56226864 Msa0738460:CDS 40.0%
AGTAGTTCTTGGAACGACAA+CGG - chr5_1:56226898-56226917 None:intergenic 40.0%
!!! CTTTTTTAGCTGTACCTGAG+TGG + chr5_1:56227021-56227040 Msa0738460:intron 40.0%
CCCTACAAAACATTGTCATG+TGG + chr5_1:56227191-56227210 Msa0738460:intron 40.0%
CATACAACCTGTCTTTACTC+TGG + chr5_1:56227409-56227428 Msa0738460:intron 40.0%
TAGTCAACCAGAGTAAAGAC+AGG - chr5_1:56227419-56227438 None:intergenic 40.0%
CAGATTGTCAACAGTTGATC+TGG - chr5_1:56227501-56227520 None:intergenic 40.0%
ATTATCGGGGTACATGAACT+TGG + chr5_1:56227566-56227585 Msa0738460:three_prime_UTR 40.0%
!! TTTCTAGTTGCCCAAAACCT+TGG + chr5_1:56227593-56227612 Msa0738460:three_prime_UTR 40.0%
! CAAGCTTAACTCCAAGGTTT+TGG - chr5_1:56227607-56227626 None:intergenic 40.0%
CAAAACCTTGGAGTTAAGCT+TGG + chr5_1:56227605-56227624 Msa0738460:three_prime_UTR 40.0%
!! TTTGGTGACATGCACGATTT+TGG + chr5_1:56227928-56227947 Msa0738460:intron 40.0%
!! GACATGCACGATTTTGGTAT+TGG + chr5_1:56227934-56227953 Msa0738460:intron 40.0%
! TGCTTAATTTGGTGGCAGAT+AGG + chr5_1:56228019-56228038 Msa0738460:intron 40.0%
AACAAGACCCAATGCAAATC+CGG - chr5_1:56228128-56228147 None:intergenic 40.0%
!! TTTCACGAGTCATTTCTAGC+CGG + chr5_1:56228214-56228233 Msa0738460:three_prime_UTR 40.0%
!! GTTTCTTGGTAACGTTCTCA+AGG + chr5_1:56228421-56228440 Msa0738460:three_prime_UTR 40.0%
TATCAACCCTCTTGTGATCT+GGG + chr5_1:56228460-56228479 Msa0738460:three_prime_UTR 40.0%
! TTTTGCCATATGGGGAAGAA+AGG + chr5_1:56228553-56228572 Msa0738460:three_prime_UTR 40.0%
TGATACCTTTCTTCCCCATA+TGG - chr5_1:56228561-56228580 None:intergenic 40.0%
TGCTCATAACCTTGTTAGTG+TGG - chr5_1:56228840-56228859 None:intergenic 40.0%
GTTCATAAAGGTGAAGCCTT+GGG - chr5_1:56229064-56229083 None:intergenic 40.0%
TGTTCATAAAGGTGAAGCCT+TGG - chr5_1:56229065-56229084 None:intergenic 40.0%
! ATATGCATCTGGAATGAGCA+TGG - chr5_1:56229132-56229151 None:intergenic 40.0%
TAGGTCTTGGTATATGCATC+TGG - chr5_1:56229143-56229162 None:intergenic 40.0%
! GTTGCGTTTTCTCAGTACAT+AGG - chr5_1:56229171-56229190 None:intergenic 40.0%
! CATATTTTTCGCTGCAGGTT+TGG - chr5_1:56229437-56229456 None:intergenic 40.0%
CAAACCTGCAGCGAAAAATA+TGG + chr5_1:56229435-56229454 Msa0738460:intron 40.0%
! AGCTGTATTGCTGTCAGTTT+TGG + chr5_1:56229472-56229491 Msa0738460:intron 40.0%
! ATATGGCTTGCAGAATACCT+CGG - chr5_1:56229500-56229519 None:intergenic 40.0%
CTTGTCCTAGAAGCGAAAAA+TGG - chr5_1:56229531-56229550 None:intergenic 40.0%
!! TTCGCTTCTAGGACAAGTTA+AGG + chr5_1:56229534-56229553 Msa0738460:intron 40.0%
AATCAAGCAAGGAGAACACT+TGG - chr5_1:56229568-56229587 None:intergenic 40.0%
TGAGTGTCCTTATGTCTGTA+CGG - chr5_1:56229597-56229616 None:intergenic 40.0%
TGTAAATGTCCAATTGGAGG+AGG + chr5_1:56229721-56229740 Msa0738460:intron 40.0%
TAAGAAACTAGCAACTCGAG+AGG - chr5_1:56229765-56229784 None:intergenic 40.0%
CATGCAGGTACATAATCAAG+AGG - chr5_1:56229823-56229842 None:intergenic 40.0%
!! GGATTTTCGATTGTGTTGCT+TGG + chr5_1:56230006-56230025 Msa0738460:three_prime_UTR 40.0%
CACACACCTAGTAAGGATCT+TGG - chr5_1:56226561-56226580 None:intergenic 45.0%
AGATAGGCACACACCTAGTA+AGG - chr5_1:56226568-56226587 None:intergenic 45.0%
!! TGGGTCCTCATTTTTCTGCT+AGG + chr5_1:56226637-56226656 Msa0738460:intron 45.0%
!! GGGTCCTCATTTTTCTGCTA+GGG + chr5_1:56226638-56226657 Msa0738460:intron 45.0%
!! TCCTCATTTTTCTGCTAGGG+TGG + chr5_1:56226641-56226660 Msa0738460:intron 45.0%
TCCACCCTAGCAGAAAAATG+AGG - chr5_1:56226645-56226664 None:intergenic 45.0%
! TAGGGTGGAGTGCTATTCAA+GGG + chr5_1:56226656-56226675 Msa0738460:intron 45.0%
CTATTCAAGGGAAACCTGTG+AGG + chr5_1:56226668-56226687 Msa0738460:five_prime_UTR 45.0%
!! TTTTAGAAGCTTGCCCTCAC+AGG - chr5_1:56226685-56226704 None:intergenic 45.0%
TTTCCTTCTGGTCAATCCTG+AGG + chr5_1:56226857-56226876 Msa0738460:CDS 45.0%
AAGTACGTACGAGTTGTCTC+TGG - chr5_1:56226927-56226946 None:intergenic 45.0%
TTAGCTGTACCTGAGTGGTT+TGG + chr5_1:56227026-56227045 Msa0738460:intron 45.0%
TTGTTAAAGGATGGCCTACC+TGG + chr5_1:56227524-56227543 Msa0738460:three_prime_UTR 45.0%
TGCCAGCTAGGAACAAAGTA+CGG - chr5_1:56227635-56227654 None:intergenic 45.0%
TATCATACAACCTGCCAGCT+AGG - chr5_1:56227647-56227666 None:intergenic 45.0%
ACCAATTGCCGGATTTGCAT+TGG + chr5_1:56228117-56228136 Msa0738460:three_prime_UTR 45.0%
CCAATTGCCGGATTTGCATT+GGG + chr5_1:56228118-56228137 Msa0738460:three_prime_UTR 45.0%
!! GGTCTTGTTCTTCTGCTTCT+AGG + chr5_1:56228139-56228158 Msa0738460:three_prime_UTR 45.0%
ATACCTCCAAGTGACGGTAT+TGG + chr5_1:56228169-56228188 Msa0738460:three_prime_UTR 45.0%
ACAACACCAATACCGTCACT+TGG - chr5_1:56228178-56228197 None:intergenic 45.0%
ATATAGCTTACCAATGCCGC+CGG - chr5_1:56228236-56228255 None:intergenic 45.0%
!! CTTGGTAACGTTCTCAAGGA+AGG + chr5_1:56228425-56228444 Msa0738460:three_prime_UTR 45.0%
CTATCAACCCTCTTGTGATC+TGG + chr5_1:56228459-56228478 Msa0738460:three_prime_UTR 45.0%
ATTCCCGCTGGAGAAATTGA+TGG + chr5_1:56228518-56228537 Msa0738460:three_prime_UTR 45.0%
CTTCACTTAGGTTTGGCCAA+TGG + chr5_1:56228604-56228623 Msa0738460:intron 45.0%
GTCTTTGGCATGCAATGATC+TGG - chr5_1:56229042-56229061 None:intergenic 45.0%
! TACATAGGAGGCATAGGTCT+TGG - chr5_1:56229156-56229175 None:intergenic 45.0%
! TCTCAGTACATAGGAGGCAT+AGG - chr5_1:56229162-56229181 None:intergenic 45.0%
! GCGTTTTCTCAGTACATAGG+AGG - chr5_1:56229168-56229187 None:intergenic 45.0%
AGCAAACGGCTGCTGTAATT+TGG - chr5_1:56229233-56229252 None:intergenic 45.0%
GGTGACAGTAGATTTGACAC+AGG - chr5_1:56229261-56229280 None:intergenic 45.0%
! GGATAAGCCAGACCAGATTT+TGG - chr5_1:56229337-56229356 None:intergenic 45.0%
!! TATGCTTTGGGAGTCCATTC+AGG - chr5_1:56229358-56229377 None:intergenic 45.0%
GGAGTCGAATGCTATGCTTT+GGG - chr5_1:56229370-56229389 None:intergenic 45.0%
!! AGCCACCATTTTTCGCTTCT+AGG + chr5_1:56229523-56229542 Msa0738460:intron 45.0%
GTCCTAGAAGCGAAAAATGG+TGG - chr5_1:56229528-56229547 None:intergenic 45.0%
TACGGTTTGCGAATCAAGCA+AGG - chr5_1:56229579-56229598 None:intergenic 45.0%
TCGCAAACCGTACAGACATA+AGG + chr5_1:56229587-56229606 Msa0738460:intron 45.0%
TTTGGAAAGCCTCCTCCAAT+TGG - chr5_1:56229733-56229752 None:intergenic 45.0%
! CTAGGGTGGAGTGCTATTCA+AGG + chr5_1:56226655-56226674 Msa0738460:intron 50.0%
CATCCTCAGGATTGACCAGA+AGG - chr5_1:56226863-56226882 None:intergenic 50.0%
TCCTGAGGATGATAAGCCAG+TGG + chr5_1:56226872-56226891 Msa0738460:CDS 50.0%
!!! TGGTTTGGTGCTGCGTCTTT+TGG + chr5_1:56227041-56227060 Msa0738460:CDS 50.0%
GGACTCCAAGCTTAACTCCA+AGG - chr5_1:56227613-56227632 None:intergenic 50.0%
TCCCGTACTTTGTTCCTAGC+TGG + chr5_1:56227630-56227649 Msa0738460:three_prime_UTR 50.0%
GCCAGCTAGGAACAAAGTAC+GGG - chr5_1:56227634-56227653 None:intergenic 50.0%
GTACTTTGTTCCTAGCTGGC+AGG + chr5_1:56227634-56227653 Msa0738460:three_prime_UTR 50.0%
! TGGTGGCAGATAGGCTCTTT+TGG + chr5_1:56228028-56228047 Msa0738460:intron 50.0%
TTGCTCAAGATTGCAGCTGC+TGG + chr5_1:56228094-56228113 Msa0738460:three_prime_UTR 50.0%
CCCAATGCAAATCCGGCAAT+TGG - chr5_1:56228121-56228140 None:intergenic 50.0%
ACACCAATACCGTCACTTGG+AGG - chr5_1:56228175-56228194 None:intergenic 50.0%
TCCAGCGGGAATACTGTTGA+TGG - chr5_1:56228510-56228529 None:intergenic 50.0%
CCTCCATCAATTTCTCCAGC+GGG - chr5_1:56228524-56228543 None:intergenic 50.0%
CCCTCCATCAATTTCTCCAG+CGG - chr5_1:56228525-56228544 None:intergenic 50.0%
CCGCTGGAGAAATTGATGGA+GGG + chr5_1:56228522-56228541 Msa0738460:three_prime_UTR 50.0%
GTGATGCAGCCACACTAACA+AGG + chr5_1:56228828-56228847 Msa0738460:intron 50.0%
!! TCTAAAATGGTGGTGGACCG+TGG - chr5_1:56228977-56228996 None:intergenic 50.0%
CATTGCATGCCAAAGACCCA+AGG + chr5_1:56229045-56229064 Msa0738460:intron 50.0%
AAGGTGAAGCCTTGGGTCTT+TGG - chr5_1:56229057-56229076 None:intergenic 50.0%
TGACACAGGCAGACAGCAAA+CGG - chr5_1:56229247-56229266 None:intergenic 50.0%
ACGGCTAGAACAACTGCACA+CGG - chr5_1:56229282-56229301 None:intergenic 50.0%
AGACTTGGCAAGCTGGAACA+CGG - chr5_1:56229301-56229320 None:intergenic 50.0%
! CTGGTCTGGCTTATCCTGAA+TGG + chr5_1:56229341-56229360 Msa0738460:intron 50.0%
CGGAGTCGAATGCTATGCTT+TGG - chr5_1:56229371-56229390 None:intergenic 50.0%
!!! TGCTGTCAGTTTTGGTTCCG+AGG + chr5_1:56229480-56229499 Msa0738460:intron 50.0%
GTGGAGGGAAAGTAGAGATG+TGG - chr5_1:56229654-56229673 None:intergenic 50.0%
CAGGCTTCAATTCGCTTCAC+AGG + chr5_1:56229985-56230004 Msa0738460:intron 50.0%
!! GCCACTGGCTTATCATCCTC+AGG - chr5_1:56226876-56226895 None:intergenic 55.0%
GGGGACATTGCGAAGCAGTA+AGG - chr5_1:56227084-56227103 None:intergenic 55.0%
CAGTAACAAGGGCTCCAGGT+AGG - chr5_1:56227541-56227560 None:intergenic 55.0%
AGTGCAGTAACAAGGGCTCC+AGG - chr5_1:56227545-56227564 None:intergenic 55.0%
!! CACGAGTCATTTCTAGCCGG+CGG + chr5_1:56228217-56228236 Msa0738460:three_prime_UTR 55.0%
!! TCATTTCTAGCCGGCGGCAT+TGG + chr5_1:56228223-56228242 Msa0738460:three_prime_UTR 55.0%
ACCCTCTTGTGATCTGGGCT+TGG + chr5_1:56228465-56228484 Msa0738460:three_prime_UTR 55.0%
CCCAAGCCCAGATCACAAGA+GGG - chr5_1:56228469-56228488 None:intergenic 55.0%
CCCTCTTGTGATCTGGGCTT+GGG + chr5_1:56228466-56228485 Msa0738460:three_prime_UTR 55.0%
GCCATCAACAGTATTCCCGC+TGG + chr5_1:56228506-56228525 Msa0738460:three_prime_UTR 55.0%
CCCGCTGGAGAAATTGATGG+AGG + chr5_1:56228521-56228540 Msa0738460:three_prime_UTR 55.0%
!! AAATGGTGGTGGACCGTGGA+TGG - chr5_1:56228973-56228992 None:intergenic 55.0%
GGCAGAAGCTGAGAGCTGTT+TGG - chr5_1:56229212-56229231 None:intergenic 55.0%
TCCAGCTTGCCAAGTCTGCT+TGG + chr5_1:56229304-56229323 Msa0738460:intron 55.0%
CCAGCTTGCCAAGTCTGCTT+GGG + chr5_1:56229305-56229324 Msa0738460:intron 55.0%
CTTGGGCTCGTGCCAAAATC+TGG + chr5_1:56229322-56229341 Msa0738460:intron 55.0%
GCTCGTGCCAAAATCTGGTC+TGG + chr5_1:56229327-56229346 Msa0738460:intron 55.0%
CTTGGAACGACAACGGCCAC+TGG - chr5_1:56226891-56226910 None:intergenic 60.0%
GACGCAGCACCAAACCACTC+AGG - chr5_1:56227038-56227057 None:intergenic 60.0%
GCAGCTGCTGGACCAATTGC+CGG + chr5_1:56228106-56228125 Msa0738460:three_prime_UTR 60.0%
GCCCAAGCCCAGATCACAAG+AGG - chr5_1:56228470-56228489 None:intergenic 60.0%
CTTGTGATCTGGGCTTGGGC+AGG + chr5_1:56228470-56228489 Msa0738460:three_prime_UTR 60.0%
CCCAAGCAGACTTGGCAAGC+TGG - chr5_1:56229308-56229327 None:intergenic 60.0%
GGCACGAGCCCAAGCAGACT+TGG - chr5_1:56229316-56229335 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56226545 56230206 56226545 ID=Msa0738460;Name=Msa0738460
chr5_1 mRNA 56226545 56230206 56226545 ID=Msa0738460-mRNA-1;Parent=Msa0738460;Name=Msa0738460-mRNA-1;_AED=0.16;_eAED=0.16;_QI=78|1|0.87|1|0.71|0.75|8|722|81
chr5_1 exon 56226545 56226573 56226545 ID=Msa0738460-mRNA-1:exon:15941;Parent=Msa0738460-mRNA-1
chr5_1 exon 56226659 56226733 56226659 ID=Msa0738460-mRNA-1:exon:15942;Parent=Msa0738460-mRNA-1
chr5_1 exon 56226831 56226936 56226831 ID=Msa0738460-mRNA-1:exon:15943;Parent=Msa0738460-mRNA-1
chr5_1 exon 56227030 56227123 56227030 ID=Msa0738460-mRNA-1:exon:15944;Parent=Msa0738460-mRNA-1
chr5_1 exon 56227502 56227655 56227502 ID=Msa0738460-mRNA-1:exon:15945;Parent=Msa0738460-mRNA-1
chr5_1 exon 56228037 56228244 56228037 ID=Msa0738460-mRNA-1:exon:15946;Parent=Msa0738460-mRNA-1
chr5_1 exon 56228414 56228574 56228414 ID=Msa0738460-mRNA-1:exon:15947;Parent=Msa0738460-mRNA-1
chr5_1 exon 56229988 56230206 56229988 ID=Msa0738460-mRNA-1:exon:15948;Parent=Msa0738460-mRNA-1
chr5_1 five_prime_UTR 56226545 56226573 56226545 ID=Msa0738460-mRNA-1:five_prime_utr;Parent=Msa0738460-mRNA-1
chr5_1 five_prime_UTR 56226659 56226707 56226659 ID=Msa0738460-mRNA-1:five_prime_utr;Parent=Msa0738460-mRNA-1
chr5_1 CDS 56226708 56226733 56226708 ID=Msa0738460-mRNA-1:cds;Parent=Msa0738460-mRNA-1
chr5_1 CDS 56226831 56226936 56226831 ID=Msa0738460-mRNA-1:cds;Parent=Msa0738460-mRNA-1
chr5_1 CDS 56227030 56227123 56227030 ID=Msa0738460-mRNA-1:cds;Parent=Msa0738460-mRNA-1
chr5_1 CDS 56227502 56227521 56227502 ID=Msa0738460-mRNA-1:cds;Parent=Msa0738460-mRNA-1
chr5_1 three_prime_UTR 56227522 56227655 56227522 ID=Msa0738460-mRNA-1:three_prime_utr;Parent=Msa0738460-mRNA-1
chr5_1 three_prime_UTR 56228037 56228244 56228037 ID=Msa0738460-mRNA-1:three_prime_utr;Parent=Msa0738460-mRNA-1
chr5_1 three_prime_UTR 56228414 56228574 56228414 ID=Msa0738460-mRNA-1:three_prime_utr;Parent=Msa0738460-mRNA-1
chr5_1 three_prime_UTR 56229988 56230206 56229988 ID=Msa0738460-mRNA-1:three_prime_utr;Parent=Msa0738460-mRNA-1
Gene Sequence

>Msa0738460

ATGATAAGATATCAAAGAGATTGCAAGATAAATTTGGAGATGAATACAGGCTTTTCCTTCTGGTCAATCCTGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTATCAACTGTTGACAATCTGA

Protein sequence

>Msa0738460

MIRYQRDCKINLEMNTGFSFWSILRMISQWPLSFQELLYNQRQLLYLSGLVLRLLESSQCLPYCFAMSPICNPIYYQLLTI*