AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797180 MtrunA17_Chr5g0400431 99.398 166 1 0 1 166 1 166 1.08e-120 337
Msa0797180 MtrunA17_Chr4g0043711 59.880 167 54 3 1 166 1 155 2.23e-69 207
Msa0797180 MtrunA17_Chr7g0260591 66.038 53 16 1 64 114 3 55 9.13e-17 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797180 AT1G32470.1 83.133 166 28 0 1 166 1 166 4.86e-94 270
Msa0797180 AT2G35370.1 83.133 166 27 1 1 166 1 165 2.33e-89 258
Msa0797180 AT2G35120.1 58.929 168 55 3 1 166 1 156 1.58e-64 195

Find 56 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATTAATTTCAATATA+TGG 0.157093 5_3:+9267775 Msa0797180:exon
ATACATCCAAGATAATATTT+TGG 0.203698 5_3:+9266321 Msa0797180:five_prime_UTR
GTAACTGAACCGCCAGGTTC+TGG 0.305688 5_3:-9267179 None:intergenic
TGAAATTAATTTCAATATAT+GGG 0.339204 5_3:+9267776 Msa0797180:exon
ATCATCCATCCATCTTCATA+TGG 0.339685 5_3:-9267662 None:intergenic
GTTACAAAGGGTAACGGTTT+CGG 0.348504 5_3:+9267197 Msa0797180:CDS
AAACATCTGGAGATGGAAAA+AGG 0.352185 5_3:-9266533 None:intergenic
TCAACAATCTCACCAGATAT+TGG 0.373303 5_3:-9267260 None:intergenic
ATCTCCAGATGTTTCTCAAC+TGG 0.379569 5_3:+9266542 Msa0797180:CDS
TCTTGGAGAGGTTGTGTTTG+TGG 0.407524 5_3:+9267151 Msa0797180:CDS
CGGAGCTGTTGAAAGTGTTA+AGG 0.409242 5_3:+9267217 Msa0797180:CDS
GATGTAAACTCTCCAATATC+TGG 0.410884 5_3:+9267248 Msa0797180:CDS
ATCTGAATTAGAAGCCTTGT+TGG 0.425384 5_3:+9267706 Msa0797180:CDS
AAAATATTATCTTGGATGTA+TGG 0.426151 5_3:-9266319 None:intergenic
AGTATGCATCTTCACATGAA+TGG 0.426720 5_3:+9266666 Msa0797180:CDS
TAACAATGGCACTGAGGATG+TGG 0.450009 5_3:+9266447 Msa0797180:exon
AGAAGAGAGTTTGAGAGCAT+TGG 0.453540 5_3:-9266483 None:intergenic
GATAAGCTCACCGGAAAACC+TGG 0.464278 5_3:+9267290 Msa0797180:CDS
TGTTGGTTGCAGGACCATCT+TGG 0.467787 5_3:+9267134 Msa0797180:intron
GAAGGCTCAGTAGCCACTAT+TGG 0.468590 5_3:+9266698 Msa0797180:CDS
TCTGAATTAGAAGCCTTGTT+GGG 0.485713 5_3:+9267707 Msa0797180:CDS
TCATCCATCCATCTTCATAT+GGG 0.487407 5_3:-9267661 None:intergenic
AATACCAGTTGAGAAACATC+TGG 0.490504 5_3:-9266546 None:intergenic
GTATGCATCTTCACATGAAT+GGG 0.495142 5_3:+9266667 Msa0797180:CDS
AGAAGCCTTGTTGGGTGCAA+AGG 0.506140 5_3:+9267715 Msa0797180:CDS
AATGAATGAATTACCAGGCC+AGG 0.510526 5_3:-9267308 None:intergenic
TTTGTGGAGCTTCCAGAACC+TGG 0.512073 5_3:+9267167 Msa0797180:CDS
TCTAATTCAGATGGATCACT+TGG 0.513292 5_3:-9267695 None:intergenic
TGAAATGATGAGATAGATAG+AGG 0.518200 5_3:-9266380 None:intergenic
TGGTATCACTGACCATGCTC+AGG 0.528384 5_3:+9266718 Msa0797180:CDS
GCTCACCGGAAAACCTGGCC+TGG 0.529026 5_3:+9267295 Msa0797180:CDS
AACTCAAGCCCATATGAAGA+TGG 0.530377 5_3:+9267653 Msa0797180:CDS
AGGGGAGAGATGTAATCTTG+AGG 0.555174 5_3:-9266510 None:intergenic
CATGAATGGGTGAAGCATGA+AGG 0.562003 5_3:+9266680 Msa0797180:CDS
CCCTTTGTAACTGAACCGCC+AGG 0.564034 5_3:-9267185 None:intergenic
CAAGCCCATATGAAGATGGA+TGG 0.567565 5_3:+9267657 Msa0797180:CDS
AACAAGGCTTCTAATTCAGA+TGG 0.567704 5_3:-9267704 None:intergenic
ACCTGGCGGTTCAGTTACAA+AGG 0.580268 5_3:+9267184 Msa0797180:CDS
AGTTGAGAAACATCTGGAGA+TGG 0.581853 5_3:-9266540 None:intergenic
GTTGCAGGACCATCTTGGAG+AGG 0.582318 5_3:+9267139 Msa0797180:intron
GGTTCAGTTACAAAGGGTAA+CGG 0.588941 5_3:+9267191 Msa0797180:CDS
CAAACACAACCTCTCCAAGA+TGG 0.593260 5_3:-9267148 None:intergenic
GAGGTTAATGATAAGCTCAC+CGG 0.595144 5_3:+9267281 Msa0797180:CDS
AATATCTGGTGAGATTGTTG+AGG 0.595757 5_3:+9267262 Msa0797180:CDS
AACAATGGCACTGAGGATGT+GGG 0.614850 5_3:+9266448 Msa0797180:exon
CCTGGCGGTTCAGTTACAAA+GGG 0.619186 5_3:+9267185 Msa0797180:CDS
TGTCGGTAACAATAATAGCA+AGG 0.624071 5_3:-9267886 None:intergenic
GACACACTGAACTGAAGTGT+CGG 0.627995 5_3:-9267903 None:intergenic
ATGGTCAGTGATACCAATAG+TGG 0.628719 5_3:-9266711 None:intergenic
GTACTCCTTTGCACCCAACA+AGG 0.634212 5_3:-9267720 None:intergenic
GTGTTGGTGTAAAGTAAAAG+AGG 0.635428 5_3:+9266256 Msa0797180:five_prime_UTR
GAGTGCACAAATAAAAGATG+AGG 0.636975 5_3:+9266283 Msa0797180:five_prime_UTR
GCAGTTAACTAACCTGAGCA+TGG 0.648601 5_3:-9266730 None:intergenic
CAAACAAAGAAGCTTAACAA+TGG 0.654959 5_3:+9266433 Msa0797180:exon
GTGGAGCTTCCAGAACCTGG+CGG 0.691995 5_3:+9267170 Msa0797180:CDS
GAAGCTTAACAATGGCACTG+AGG 0.716107 5_3:+9266441 Msa0797180:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATTAATTTCAATATA+TGG + chr5_3:9267775-9267794 Msa0797180:exon 10.0%
!! TGAAATTAATTTCAATATAT+GGG + chr5_3:9267776-9267795 Msa0797180:exon 10.0%
!! TTGAAATTAATTTCAATATA+TGG + chr5_3:9267775-9267794 Msa0797180:exon 10.0%
!! TGAAATTAATTTCAATATAT+GGG + chr5_3:9267776-9267795 Msa0797180:exon 10.0%
!! AAAATATTATCTTGGATGTA+TGG - chr5_3:9266322-9266341 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG + chr5_3:9266321-9266340 Msa0797180:five_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG + chr5_3:9266322-9266341 Msa0797180:five_prime_UTR 20.0%
!!! TATATAAATTTTTGCAGTGT+TGG + chr5_3:9266634-9266653 Msa0797180:intron 20.0%
!!! TATTCGAATTAGTTTGTTTT+TGG + chr5_3:9266841-9266860 Msa0797180:intron 20.0%
!!! ATTCGAATTAGTTTGTTTTT+GGG + chr5_3:9266842-9266861 Msa0797180:intron 20.0%
!! TGAATTAGACTTTAATTACT+AGG + chr5_3:9266945-9266964 Msa0797180:intron 20.0%
!! GAAGATTAATTACTTAGAAA+TGG + chr5_3:9267358-9267377 Msa0797180:intron 20.0%
!! GTACATTTATGAAAAATAAG+CGG + chr5_3:9267494-9267513 Msa0797180:intron 20.0%
!! AAAATATTATCTTGGATGTA+TGG - chr5_3:9266322-9266341 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG + chr5_3:9266321-9266340 Msa0797180:five_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG + chr5_3:9266322-9266341 Msa0797180:five_prime_UTR 20.0%
!!! TATATAAATTTTTGCAGTGT+TGG + chr5_3:9266634-9266653 Msa0797180:intron 20.0%
!!! TATTCGAATTAGTTTGTTTT+TGG + chr5_3:9266841-9266860 Msa0797180:intron 20.0%
!!! ATTCGAATTAGTTTGTTTTT+GGG + chr5_3:9266842-9266861 Msa0797180:intron 20.0%
!! TGAATTAGACTTTAATTACT+AGG + chr5_3:9266945-9266964 Msa0797180:intron 20.0%
!! GAAGATTAATTACTTAGAAA+TGG + chr5_3:9267358-9267377 Msa0797180:intron 20.0%
!! GTACATTTATGAAAAATAAG+CGG + chr5_3:9267494-9267513 Msa0797180:intron 20.0%
! AAAGTTTCCACATAAAAAAG+TGG + chr5_3:9266234-9266253 Msa0797180:five_prime_UTR 25.0%
!! CTTTTCCCAAAATATTATCT+TGG - chr5_3:9266330-9266349 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG + chr5_3:9266328-9266347 Msa0797180:five_prime_UTR 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG - chr5_3:9267045-9267064 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG + chr5_3:9267086-9267105 Msa0797180:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG + chr5_3:9267117-9267136 Msa0797180:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG + chr5_3:9267328-9267347 Msa0797180:intron 25.0%
! AAAGTTTCCACATAAAAAAG+TGG + chr5_3:9266234-9266253 Msa0797180:five_prime_UTR 25.0%
!! CTTTTCCCAAAATATTATCT+TGG - chr5_3:9266330-9266349 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG + chr5_3:9266328-9266347 Msa0797180:five_prime_UTR 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG - chr5_3:9267045-9267064 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG + chr5_3:9267086-9267105 Msa0797180:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG + chr5_3:9267117-9267136 Msa0797180:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG + chr5_3:9267328-9267347 Msa0797180:intron 25.0%
TGAAATGATGAGATAGATAG+AGG - chr5_3:9266383-9266402 None:intergenic 30.0%
CAAACAAAGAAGCTTAACAA+TGG + chr5_3:9266433-9266452 Msa0797180:exon 30.0%
CATTCAACTTGATAGGAAAA+AGG - chr5_3:9266588-9266607 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG + chr5_3:9266638-9266657 Msa0797180:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG - chr5_3:9266765-9266784 None:intergenic 30.0%
!!! GAATTAGTTTGTTTTTGGGT+CGG + chr5_3:9266846-9266865 Msa0797180:intron 30.0%
ATTGAGCTAAGAGTTAAATG+AGG + chr5_3:9266998-9267017 Msa0797180:intron 30.0%
GAGTTAATGAATGAATTACC+AGG - chr5_3:9267316-9267335 None:intergenic 30.0%
TGAAATGATGAGATAGATAG+AGG - chr5_3:9266383-9266402 None:intergenic 30.0%
CAAACAAAGAAGCTTAACAA+TGG + chr5_3:9266433-9266452 Msa0797180:exon 30.0%
CATTCAACTTGATAGGAAAA+AGG - chr5_3:9266588-9266607 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG + chr5_3:9266638-9266657 Msa0797180:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG - chr5_3:9266765-9266784 None:intergenic 30.0%
!!! GAATTAGTTTGTTTTTGGGT+CGG + chr5_3:9266846-9266865 Msa0797180:intron 30.0%
ATTGAGCTAAGAGTTAAATG+AGG + chr5_3:9266998-9267017 Msa0797180:intron 30.0%
GAGTTAATGAATGAATTACC+AGG - chr5_3:9267316-9267335 None:intergenic 30.0%
TCCACATAAAAAAGTGGTGT+TGG + chr5_3:9266240-9266259 Msa0797180:five_prime_UTR 35.0%
!!! ACCAACACCACTTTTTTATG+TGG - chr5_3:9266244-9266263 None:intergenic 35.0%
! GTGTTGGTGTAAAGTAAAAG+AGG + chr5_3:9266256-9266275 Msa0797180:five_prime_UTR 35.0%
GAGTGCACAAATAAAAGATG+AGG + chr5_3:9266283-9266302 Msa0797180:five_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG - chr5_3:9266536-9266555 None:intergenic 35.0%
AATACCAGTTGAGAAACATC+TGG - chr5_3:9266549-9266568 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG - chr5_3:9266584-9266603 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG - chr5_3:9266585-9266604 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG - chr5_3:9266595-9266614 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG + chr5_3:9266592-9266611 Msa0797180:intron 35.0%
AGTATGCATCTTCACATGAA+TGG + chr5_3:9266666-9266685 Msa0797180:CDS 35.0%
GTATGCATCTTCACATGAAT+GGG + chr5_3:9266667-9266686 Msa0797180:CDS 35.0%
TATTGTGGAGAATGTTAAGG+AGG - chr5_3:9266762-9266781 None:intergenic 35.0%
GATGTAAACTCTCCAATATC+TGG + chr5_3:9267248-9267267 Msa0797180:CDS 35.0%
TCAACAATCTCACCAGATAT+TGG - chr5_3:9267263-9267282 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG + chr5_3:9267262-9267281 Msa0797180:CDS 35.0%
TGAAGACATAAGTGAACTAG+AGG + chr5_3:9267470-9267489 Msa0797180:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG + chr5_3:9267471-9267490 Msa0797180:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG + chr5_3:9267472-9267491 Msa0797180:intron 35.0%
TCATCCATCCATCTTCATAT+GGG - chr5_3:9267664-9267683 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG - chr5_3:9267665-9267684 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG - chr5_3:9267698-9267717 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG - chr5_3:9267707-9267726 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG + chr5_3:9267706-9267725 Msa0797180:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG + chr5_3:9267707-9267726 Msa0797180:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG + chr5_3:9267736-9267755 Msa0797180:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG - chr5_3:9267889-9267908 None:intergenic 35.0%
TCCACATAAAAAAGTGGTGT+TGG + chr5_3:9266240-9266259 Msa0797180:five_prime_UTR 35.0%
!!! ACCAACACCACTTTTTTATG+TGG - chr5_3:9266244-9266263 None:intergenic 35.0%
! GTGTTGGTGTAAAGTAAAAG+AGG + chr5_3:9266256-9266275 Msa0797180:five_prime_UTR 35.0%
GAGTGCACAAATAAAAGATG+AGG + chr5_3:9266283-9266302 Msa0797180:five_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG - chr5_3:9266536-9266555 None:intergenic 35.0%
AATACCAGTTGAGAAACATC+TGG - chr5_3:9266549-9266568 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG - chr5_3:9266584-9266603 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG - chr5_3:9266585-9266604 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG - chr5_3:9266595-9266614 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG + chr5_3:9266592-9266611 Msa0797180:intron 35.0%
AGTATGCATCTTCACATGAA+TGG + chr5_3:9266666-9266685 Msa0797180:CDS 35.0%
GTATGCATCTTCACATGAAT+GGG + chr5_3:9266667-9266686 Msa0797180:CDS 35.0%
TATTGTGGAGAATGTTAAGG+AGG - chr5_3:9266762-9266781 None:intergenic 35.0%
GATGTAAACTCTCCAATATC+TGG + chr5_3:9267248-9267267 Msa0797180:CDS 35.0%
TCAACAATCTCACCAGATAT+TGG - chr5_3:9267263-9267282 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG + chr5_3:9267262-9267281 Msa0797180:CDS 35.0%
TGAAGACATAAGTGAACTAG+AGG + chr5_3:9267470-9267489 Msa0797180:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG + chr5_3:9267471-9267490 Msa0797180:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG + chr5_3:9267472-9267491 Msa0797180:intron 35.0%
TCATCCATCCATCTTCATAT+GGG - chr5_3:9267664-9267683 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG - chr5_3:9267665-9267684 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG - chr5_3:9267698-9267717 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG - chr5_3:9267707-9267726 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG + chr5_3:9267706-9267725 Msa0797180:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG + chr5_3:9267707-9267726 Msa0797180:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG + chr5_3:9267736-9267755 Msa0797180:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG - chr5_3:9267889-9267908 None:intergenic 35.0%
! AGAAGAGAGTTTGAGAGCAT+TGG - chr5_3:9266486-9266505 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG - chr5_3:9266532-9266551 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG - chr5_3:9266543-9266562 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG + chr5_3:9266542-9266561 Msa0797180:CDS 40.0%
ATGGTCAGTGATACCAATAG+TGG - chr5_3:9266714-9266733 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG - chr5_3:9266817-9266836 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG - chr5_3:9266818-9266837 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG - chr5_3:9266819-9266838 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG + chr5_3:9267124-9267143 Msa0797180:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG + chr5_3:9267191-9267210 Msa0797180:CDS 40.0%
! GTTACAAAGGGTAACGGTTT+CGG + chr5_3:9267197-9267216 Msa0797180:CDS 40.0%
GAGGTTAATGATAAGCTCAC+CGG + chr5_3:9267281-9267300 Msa0797180:CDS 40.0%
AATGAATGAATTACCAGGCC+AGG - chr5_3:9267311-9267330 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG + chr5_3:9267653-9267672 Msa0797180:CDS 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG - chr5_3:9266486-9266505 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG - chr5_3:9266532-9266551 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG - chr5_3:9266543-9266562 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG + chr5_3:9266542-9266561 Msa0797180:CDS 40.0%
ATGGTCAGTGATACCAATAG+TGG - chr5_3:9266714-9266733 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG - chr5_3:9266817-9266836 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG - chr5_3:9266818-9266837 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG - chr5_3:9266819-9266838 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG + chr5_3:9267124-9267143 Msa0797180:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG + chr5_3:9267191-9267210 Msa0797180:CDS 40.0%
! GTTACAAAGGGTAACGGTTT+CGG + chr5_3:9267197-9267216 Msa0797180:CDS 40.0%
GAGGTTAATGATAAGCTCAC+CGG + chr5_3:9267281-9267300 Msa0797180:CDS 40.0%
AATGAATGAATTACCAGGCC+AGG - chr5_3:9267311-9267330 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG + chr5_3:9267653-9267672 Msa0797180:CDS 40.0%
GAAGCTTAACAATGGCACTG+AGG + chr5_3:9266441-9266460 Msa0797180:exon 45.0%
! TAACAATGGCACTGAGGATG+TGG + chr5_3:9266447-9266466 Msa0797180:exon 45.0%
! AACAATGGCACTGAGGATGT+GGG + chr5_3:9266448-9266467 Msa0797180:exon 45.0%
AGGGGAGAGATGTAATCTTG+AGG - chr5_3:9266513-9266532 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG - chr5_3:9266531-9266550 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG - chr5_3:9266533-9266552 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG + chr5_3:9266680-9266699 Msa0797180:CDS 45.0%
GCAGTTAACTAACCTGAGCA+TGG - chr5_3:9266733-9266752 None:intergenic 45.0%
TGGAGAATGTTAAGGAGGAG+AGG - chr5_3:9266757-9266776 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG - chr5_3:9266777-9266796 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG + chr5_3:9266790-9266809 Msa0797180:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG - chr5_3:9266816-9266835 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG - chr5_3:9267151-9267170 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG + chr5_3:9267151-9267170 Msa0797180:CDS 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG + chr5_3:9267217-9267236 Msa0797180:CDS 45.0%
! AATTACCAGGCCAGGTTTTC+CGG - chr5_3:9267303-9267322 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG + chr5_3:9267657-9267676 Msa0797180:CDS 45.0%
GACACACTGAACTGAAGTGT+CGG - chr5_3:9267906-9267925 None:intergenic 45.0%
GAAGCTTAACAATGGCACTG+AGG + chr5_3:9266441-9266460 Msa0797180:exon 45.0%
! TAACAATGGCACTGAGGATG+TGG + chr5_3:9266447-9266466 Msa0797180:exon 45.0%
! AACAATGGCACTGAGGATGT+GGG + chr5_3:9266448-9266467 Msa0797180:exon 45.0%
AGGGGAGAGATGTAATCTTG+AGG - chr5_3:9266513-9266532 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG - chr5_3:9266531-9266550 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG - chr5_3:9266533-9266552 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG + chr5_3:9266680-9266699 Msa0797180:CDS 45.0%
GCAGTTAACTAACCTGAGCA+TGG - chr5_3:9266733-9266752 None:intergenic 45.0%
TGGAGAATGTTAAGGAGGAG+AGG - chr5_3:9266757-9266776 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG - chr5_3:9266777-9266796 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG + chr5_3:9266790-9266809 Msa0797180:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG - chr5_3:9266816-9266835 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG - chr5_3:9267151-9267170 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG + chr5_3:9267151-9267170 Msa0797180:CDS 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG + chr5_3:9267217-9267236 Msa0797180:CDS 45.0%
! AATTACCAGGCCAGGTTTTC+CGG - chr5_3:9267303-9267322 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG + chr5_3:9267657-9267676 Msa0797180:CDS 45.0%
GACACACTGAACTGAAGTGT+CGG - chr5_3:9267906-9267925 None:intergenic 45.0%
GAAGGCTCAGTAGCCACTAT+TGG + chr5_3:9266698-9266717 Msa0797180:CDS 50.0%
TGGTATCACTGACCATGCTC+AGG + chr5_3:9266718-9266737 Msa0797180:CDS 50.0%
! TATGTCCATGCAAAGCGCTC+TGG + chr5_3:9266780-9266799 Msa0797180:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG - chr5_3:9266788-9266807 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG + chr5_3:9267134-9267153 Msa0797180:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG + chr5_3:9267167-9267186 Msa0797180:CDS 50.0%
ACCTGGCGGTTCAGTTACAA+AGG + chr5_3:9267184-9267203 Msa0797180:CDS 50.0%
CCTGGCGGTTCAGTTACAAA+GGG + chr5_3:9267185-9267204 Msa0797180:CDS 50.0%
GATAAGCTCACCGGAAAACC+TGG + chr5_3:9267290-9267309 Msa0797180:CDS 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG + chr5_3:9267715-9267734 Msa0797180:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG - chr5_3:9267723-9267742 None:intergenic 50.0%
GAAGGCTCAGTAGCCACTAT+TGG + chr5_3:9266698-9266717 Msa0797180:CDS 50.0%
TGGTATCACTGACCATGCTC+AGG + chr5_3:9266718-9266737 Msa0797180:CDS 50.0%
! TATGTCCATGCAAAGCGCTC+TGG + chr5_3:9266780-9266799 Msa0797180:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG - chr5_3:9266788-9266807 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG + chr5_3:9267134-9267153 Msa0797180:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG + chr5_3:9267167-9267186 Msa0797180:CDS 50.0%
ACCTGGCGGTTCAGTTACAA+AGG + chr5_3:9267184-9267203 Msa0797180:CDS 50.0%
CCTGGCGGTTCAGTTACAAA+GGG + chr5_3:9267185-9267204 Msa0797180:CDS 50.0%
GATAAGCTCACCGGAAAACC+TGG + chr5_3:9267290-9267309 Msa0797180:CDS 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG + chr5_3:9267715-9267734 Msa0797180:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG - chr5_3:9267723-9267742 None:intergenic 50.0%
GTTGCAGGACCATCTTGGAG+AGG + chr5_3:9267139-9267158 Msa0797180:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG - chr5_3:9267182-9267201 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG - chr5_3:9267188-9267207 None:intergenic 55.0%
GTTGCAGGACCATCTTGGAG+AGG + chr5_3:9267139-9267158 Msa0797180:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG - chr5_3:9267182-9267201 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG - chr5_3:9267188-9267207 None:intergenic 55.0%
GTGGAGCTTCCAGAACCTGG+CGG + chr5_3:9267170-9267189 Msa0797180:CDS 60.0%
GTGGAGCTTCCAGAACCTGG+CGG + chr5_3:9267170-9267189 Msa0797180:CDS 60.0%
GCTCACCGGAAAACCTGGCC+TGG + chr5_3:9267295-9267314 Msa0797180:CDS 65.0%
GCTCACCGGAAAACCTGGCC+TGG + chr5_3:9267295-9267314 Msa0797180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9266227 9267970 9266227 ID=Msa0797180;Name=Msa0797180
chr5_3 mRNA 9266227 9267970 9266227 ID=Msa0797180-mRNA-1;Parent=Msa0797180;Name=Msa0797180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=225|1|1|1|1|1|4|192|166
chr5_3 exon 9266227 9266563 9266227 ID=Msa0797180-mRNA-1:exon:3985;Parent=Msa0797180-mRNA-1
chr5_3 exon 9266651 9266739 9266651 ID=Msa0797180-mRNA-1:exon:3986;Parent=Msa0797180-mRNA-1
chr5_3 exon 9267146 9267316 9267146 ID=Msa0797180-mRNA-1:exon:3987;Parent=Msa0797180-mRNA-1
chr5_3 exon 9267650 9267970 9267650 ID=Msa0797180-mRNA-1:exon:3988;Parent=Msa0797180-mRNA-1
chr5_3 five_prime_UTR 9266227 9266451 9266227 ID=Msa0797180-mRNA-1:five_prime_utr;Parent=Msa0797180-mRNA-1
chr5_3 CDS 9266452 9266563 9266452 ID=Msa0797180-mRNA-1:cds;Parent=Msa0797180-mRNA-1
chr5_3 CDS 9266651 9266739 9266651 ID=Msa0797180-mRNA-1:cds;Parent=Msa0797180-mRNA-1
chr5_3 CDS 9267146 9267316 9267146 ID=Msa0797180-mRNA-1:cds;Parent=Msa0797180-mRNA-1
chr5_3 CDS 9267650 9267778 9267650 ID=Msa0797180-mRNA-1:cds;Parent=Msa0797180-mRNA-1
chr5_3 three_prime_UTR 9267779 9267970 9267779 ID=Msa0797180-mRNA-1:three_prime_utr;Parent=Msa0797180-mRNA-1
Gene Sequence

>Msa0797180

ATGGCACTGAGGATGTGGGCTTCTTCAACTGCCAATGCTCTCAAACTCTCTTCTTCTTCCTCAAGATTACATCTCTCCCCTCCTTTTTCCATCTCCAGATGTTTCTCAACTGTGTTGGATGGACTCAAGTATGCATCTTCACATGAATGGGTGAAGCATGAAGGCTCAGTAGCCACTATTGGTATCACTGACCATGCTCAGGACCATCTTGGAGAGGTTGTGTTTGTGGAGCTTCCAGAACCTGGCGGTTCAGTTACAAAGGGTAACGGTTTCGGAGCTGTTGAAAGTGTTAAGGCAACAAGTGATGTAAACTCTCCAATATCTGGTGAGATTGTTGAGGTTAATGATAAGCTCACCGGAAAACCTGGCCTGATCAACTCAAGCCCATATGAAGATGGATGGATGATCAAAATAAAGCCAAGTGATCCATCTGAATTAGAAGCCTTGTTGGGTGCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCTGCACATTGA

Protein sequence

>Msa0797180

MALRMWASSTANALKLSSSSSRLHLSPPFSISRCFSTVLDGLKYASSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGGSVTKGNGFGAVESVKATSDVNSPISGEIVEVNDKLTGKPGLINSSPYEDGWMIKIKPSDPSELEALLGAKEYTKFCEEEDAAH*