AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0424220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424220 MtrunA17_Chr3g0125881 98.134 268 5 0 1 268 1 268 0.0 543
Msa0424220 MtrunA17_Chr6g0457731 91.379 58 5 0 162 219 1 58 8.52e-33 114
Msa0424220 MtrunA17_Chr7g0255661 31.707 164 91 6 121 267 100 259 1.10e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0424220 AT1G77090.1 77.232 224 46 2 49 268 38 260 2.52e-126 360
Msa0424220 AT3G56650.1 30.247 162 92 6 123 267 105 262 6.84e-18 81.3

Find 87 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCACTCTTGTTCTTTA+AGG 0.103321 3_2:-74423373 Msa0424220:five_prime_UTR
TCACTAGATGCTATTCTTTC+AGG 0.166955 3_2:-74420436 None:intergenic
CCATTCTTGAGGCACTTTAA+AGG 0.210920 3_2:+74421572 None:intergenic
TTAAAGGTGTATGGAATAAT+AGG 0.298400 3_2:+74421588 None:intergenic
GGTGAACAGAAGAGCAGTTT+TGG 0.313029 3_2:-74423131 Msa0424220:CDS
GTGTTGTGGGTTTCTTCTAT+AGG 0.339103 3_2:+74423267 None:intergenic
GCTTCTGGAGTTTCCTTGTT+GGG 0.353626 3_2:-74423109 Msa0424220:CDS
TACTTCATAACCTTAGCCTT+TGG 0.356614 3_2:-74423446 Msa0424220:five_prime_UTR
GGCTTCTGGAGTTTCCTTGT+TGG 0.366718 3_2:-74423110 Msa0424220:CDS
CTATACTTGTTTGGTGTAAC+CGG 0.376509 3_2:-74420890 Msa0424220:CDS
CTTCTAGCAGGGAGAATTCC+TGG 0.384668 3_2:-74423049 Msa0424220:CDS
TGAGGCACTTTAAAGGTGTA+TGG 0.385118 3_2:+74421579 None:intergenic
TTCATTACGGCCACCGCTGC+TGG 0.392527 3_2:-74420920 Msa0424220:CDS
TGTCCTCCTGATTTCTCATC+TGG 0.394737 3_2:+74421627 None:intergenic
TTGTTTGGTGTAACCGGTAA+TGG 0.408086 3_2:-74420884 Msa0424220:intron
TTACATTGTTATGCTTAGGC+AGG 0.414782 3_2:-74420526 Msa0424220:three_prime_UTR
GGCAACCGCCTATACTTGTT+TGG 0.416295 3_2:-74420899 Msa0424220:CDS
ACAATGTAACAAAACTGTTA+TGG 0.423744 3_2:+74420540 None:intergenic
GACAAAGTGATCAGTGCATT+TGG 0.425180 3_2:-74421049 Msa0424220:CDS
GTTAACGAACCTTGTTCATC+TGG 0.425267 3_2:+74423016 None:intergenic
ATGAGTAAACATACCATTAC+CGG 0.428524 3_2:+74420871 None:intergenic
AATGCACTGATCACTTTGTC+TGG 0.429585 3_2:+74421052 None:intergenic
CGCAGGCCAGATGAGAAATC+AGG 0.439964 3_2:-74421633 Msa0424220:CDS
GTTATGAAGTTGATCACTCT+TGG 0.444783 3_2:-74420485 Msa0424220:three_prime_UTR
TGATAAATGTTCATCTTTGT+TGG 0.447757 3_2:-74423152 Msa0424220:CDS
CGGTTACACCAAACAAGTAT+AGG 0.450219 3_2:+74420891 None:intergenic
TGCACTCTTGTTCTTTAAGG+TGG 0.451949 3_2:-74423370 Msa0424220:five_prime_UTR
CCTTTAAAGTGCCTCAAGAA+TGG 0.454989 3_2:-74421572 Msa0424220:CDS
GTTGGATATACATGTGTTGT+GGG 0.458582 3_2:+74423254 None:intergenic
CCAAGATCTGCTATTGATAC+AGG 0.460727 3_2:+74421293 None:intergenic
TCCAGGAGTGAGTTTGGCTG+TGG 0.472811 3_2:-74423083 Msa0424220:CDS
CTTTAAAGTGCCTCAAGAAT+GGG 0.477276 3_2:-74421571 Msa0424220:CDS
GCATTTGGTCCTGAAATGAT+TGG 0.486722 3_2:-74421034 Msa0424220:CDS
ACCACAGCCAAACTCACTCC+TGG 0.493815 3_2:+74423082 None:intergenic
GTTAAACAAGGTCTTCTAGC+AGG 0.494158 3_2:-74423061 Msa0424220:CDS
GATTCACAGAAATCCCAATC+AGG 0.494640 3_2:+74420602 None:intergenic
TATGAAGTAAAAGATATTTG+TGG 0.500616 3_2:+74423460 None:intergenic
CCTGTATCAATAGCAGATCT+TGG 0.502162 3_2:-74421293 Msa0424220:CDS
CCATCGGAGAATCTAAGAAC+AGG 0.502404 3_2:+74421206 None:intergenic
AACTTACTATCAGTTTGAGC+TGG 0.504221 3_2:-74420957 Msa0424220:CDS
AAGCACATCATCAATCTTCG+TGG 0.509428 3_2:-74423326 Msa0424220:five_prime_UTR
ATCATCAATCTTCGTGGACA+TGG 0.513825 3_2:-74423320 Msa0424220:exon
GCATCTAGTGAGTACTTAGC+AGG 0.517495 3_2:+74420448 None:intergenic
AAGTAGAGTTGTTGTGGACA+AGG 0.522596 3_2:+74423291 None:intergenic
TGTAGTGTCTCTTCCACTGA+AGG 0.524498 3_2:+74420751 None:intergenic
CAGGAGGACACGGTGTTGGA+TGG 0.524720 3_2:-74421614 Msa0424220:CDS
ATAGGAAAGTAGAGTTGTTG+TGG 0.538638 3_2:+74423285 None:intergenic
TAGGCGGTTGCCAGCAGCGG+TGG 0.539049 3_2:+74420910 None:intergenic
AAATCAGGAGGACACGGTGT+TGG 0.539618 3_2:-74421618 Msa0424220:CDS
CAGACGTCCTTCCTTAGAGC+TGG 0.541704 3_2:+74421244 None:intergenic
TCAAATGTTGCAGAACATGA+AGG 0.543778 3_2:-74420983 Msa0424220:CDS
TGGAGAAAATGTGGAAGGGA+AGG 0.549881 3_2:-74421014 Msa0424220:CDS
TACATTGTTATGCTTAGGCA+GGG 0.550256 3_2:-74420525 Msa0424220:three_prime_UTR
TCTTAATTGCAGGCCTTCAG+TGG 0.551749 3_2:-74420764 Msa0424220:intron
AAACTGTTATGGTATATTGA+AGG 0.553878 3_2:+74420551 None:intergenic
GGTTGGATATACATGTGTTG+TGG 0.559670 3_2:+74423253 None:intergenic
TTTGTTACATTGTTATGCTT+AGG 0.563767 3_2:-74420530 Msa0424220:three_prime_UTR
TGAAATGATTGGAGAAAATG+TGG 0.574438 3_2:-74421023 Msa0424220:CDS
ACATGGAAGTTGAGGTCCAA+AGG 0.575208 3_2:+74423430 None:intergenic
GTGGCCGTAATGAAAATATG+AGG 0.575485 3_2:+74420929 None:intergenic
ATCACCTCTTCCCATTCTTG+AGG 0.579716 3_2:+74421561 None:intergenic
CACTCCTGGAAAACCCAACA+AGG 0.583287 3_2:+74423096 None:intergenic
AAATATTAACATGGAAGTTG+AGG 0.583993 3_2:+74423422 None:intergenic
CAGGTTGGAGGACATATCGC+AGG 0.585205 3_2:-74421650 Msa0424220:CDS
GTATCAATAGCAGATCTTGG+TGG 0.585808 3_2:-74421290 Msa0424220:CDS
TGTGCATGCTTCAGTCTCAA+AGG 0.591583 3_2:-74423200 Msa0424220:CDS
TCCCAATCAGGAAAAGTAGT+GGG 0.596078 3_2:+74420614 None:intergenic
CTGTCTGAGCCAGATGAACA+AGG 0.596600 3_2:-74423025 Msa0424220:intron
ATCCCAATCAGGAAAAGTAG+TGG 0.597996 3_2:+74420613 None:intergenic
GTATAGGCGGTTGCCAGCAG+CGG 0.599408 3_2:+74420907 None:intergenic
CAAATGTTGCAGAACATGAA+GGG 0.602320 3_2:-74420982 Msa0424220:CDS
AAGTTGAGGTCCAAAGGCTA+AGG 0.605211 3_2:+74423436 None:intergenic
AGTTTGGCTGTGGTTAAACA+AGG 0.615204 3_2:-74423073 Msa0424220:CDS
CCTGTTCTTAGATTCTCCGA+TGG 0.616850 3_2:-74421206 Msa0424220:intron
TCATCTGGCTCAGACAGACC+AGG 0.619141 3_2:+74423031 None:intergenic
TTATACAACTCGAAAAGAGT+CGG 0.622471 3_2:+74420710 None:intergenic
ATGATTGGAGAAAATGTGGA+AGG 0.623515 3_2:-74421019 Msa0424220:CDS
AGTGCCTCAAGAATGGGAAG+AGG 0.627362 3_2:-74421565 Msa0424220:intron
TTAAACAAGGTCTTCTAGCA+GGG 0.627829 3_2:-74423060 Msa0424220:CDS
ATTGTTATGCTTAGGCAGGG+TGG 0.627880 3_2:-74420522 Msa0424220:three_prime_UTR
AAGTAGTGGAAATATTAACA+TGG 0.631287 3_2:+74423413 None:intergenic
GCACTGATCACTTTGTCTGG+AGG 0.652054 3_2:+74421055 None:intergenic
TGATTGGAGAAAATGTGGAA+GGG 0.655080 3_2:-74421018 Msa0424220:CDS
GATGAGAAATCAGGAGGACA+CGG 0.664202 3_2:-74421624 Msa0424220:CDS
GCCGTAATGAAAATATGAGG+AGG 0.673890 3_2:+74420932 None:intergenic
AGGCCAGATGAGAAATCAGG+AGG 0.693963 3_2:-74421630 Msa0424220:CDS
TTACACCAAACAAGTATAGG+CGG 0.725370 3_2:+74420894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATATATTTAGTTAAT+AGG - chr3_2:74421106-74421125 Msa0424220:intron 10.0%
!! AAAACATATATATAATTAAG+TGG - chr3_2:74421671-74421690 Msa0424220:intron 10.0%
!! AAACATATATATAATTAAGT+GGG - chr3_2:74421672-74421691 Msa0424220:intron 10.0%
!!! TTTTCCCTATATATTAAATT+CGG - chr3_2:74420923-74420942 Msa0424220:CDS 15.0%
!!! TCAAATTTTGAAATCATAAT+GGG - chr3_2:74420984-74421003 Msa0424220:CDS 15.0%
!!! AAGAAGTGTAATAAAAAAAT+TGG - chr3_2:74421050-74421069 Msa0424220:CDS 15.0%
!!! AGAAGTGTAATAAAAAAATT+GGG - chr3_2:74421051-74421070 Msa0424220:CDS 15.0%
!! TAATAAAAAAATTGGGAATT+TGG - chr3_2:74421058-74421077 Msa0424220:CDS 15.0%
!! AATAAAAAAATTGGGAATTT+GGG - chr3_2:74421059-74421078 Msa0424220:CDS 15.0%
!!! TCTATTTTATGATGTTTTTT+GGG + chr3_2:74421544-74421563 None:intergenic 15.0%
!!! ATCTATTTTATGATGTTTTT+TGG + chr3_2:74421545-74421564 None:intergenic 15.0%
!!! AAATATCTTTTGACATTTAT+TGG - chr3_2:74421635-74421654 Msa0424220:CDS 15.0%
!! AACATATATATAATTAAGTG+GGG - chr3_2:74421673-74421692 Msa0424220:intron 15.0%
!! ATAAATAAAATCATTTGCAA+CGG + chr3_2:74422008-74422027 None:intergenic 15.0%
!!! ATTTCATATTTTCAATTCAT+TGG + chr3_2:74423220-74423239 None:intergenic 15.0%
!! ATAACATTCATAAAAAGTAG+TGG + chr3_2:74420499-74420518 None:intergenic 20.0%
!!! GTCAAATTTTGAAATCATAA+TGG - chr3_2:74420983-74421002 Msa0424220:CDS 20.0%
!! AAATTGCTCATATATAGTTA+TGG + chr3_2:74421480-74421499 None:intergenic 20.0%
!! ACATATATATAATTAAGTGG+GGG - chr3_2:74421674-74421693 Msa0424220:intron 20.0%
!! TTATTTGACAATATTTCAAG+AGG - chr3_2:74421799-74421818 Msa0424220:intron 20.0%
!! AGAAAGTTAAAATGAACAAA+AGG + chr3_2:74422731-74422750 None:intergenic 20.0%
!!! TTTTGTTCATTTTAACTTTC+TGG - chr3_2:74422730-74422749 Msa0424220:intron 20.0%
!! AATCTTTAATATGCAGTTAT+TGG - chr3_2:74422789-74422808 Msa0424220:intron 20.0%
!! TAGAAAATAATCTTAATTGC+AGG - chr3_2:74423121-74423140 Msa0424220:CDS 20.0%
! AAATATTAACATGGAAGTTG+AGG + chr3_2:74420476-74420495 None:intergenic 25.0%
!! AAGTAGTGGAAATATTAACA+TGG + chr3_2:74420485-74420504 None:intergenic 25.0%
!!! ACTTCATTTTTAACTGAACA+GGG + chr3_2:74420666-74420685 None:intergenic 25.0%
!!! AACTTCATTTTTAACTGAAC+AGG + chr3_2:74420667-74420686 None:intergenic 25.0%
! TGATAAATGTTCATCTTTGT+TGG - chr3_2:74420743-74420762 Msa0424220:CDS 25.0%
! TGAACCATATGTGTAATAAT+CGG + chr3_2:74420959-74420978 None:intergenic 25.0%
! ATTATTACACATATGGTTCA+AGG - chr3_2:74420959-74420978 Msa0424220:CDS 25.0%
! TTATTACACATATGGTTCAA+GGG - chr3_2:74420960-74420979 Msa0424220:CDS 25.0%
!!! CAAAACTTTTAGAAAACAAG+TGG + chr3_2:74421087-74421106 None:intergenic 25.0%
!!! AAACTTAGGGATATTTTTGA+AGG - chr3_2:74421137-74421156 Msa0424220:intron 25.0%
!! TAATGCACTATCTAAAACTT+GGG - chr3_2:74421229-74421248 Msa0424220:CDS 25.0%
! ACCAGTAATTATAAGTTGTA+GGG + chr3_2:74421305-74421324 None:intergenic 25.0%
! TACCAGTAATTATAAGTTGT+AGG + chr3_2:74421306-74421325 None:intergenic 25.0%
! ACTGGTATAAGTTAGTAAAT+CGG - chr3_2:74421319-74421338 Msa0424220:intron 25.0%
!! ACATAATACTGTTGTAGTTT+TGG - chr3_2:74421379-74421398 Msa0424220:intron 25.0%
! ATATATGAGCAATTTCAGAA+CGG - chr3_2:74421485-74421504 Msa0424220:intron 25.0%
! CATCATAAAATAGATATGCA+CGG - chr3_2:74421550-74421569 Msa0424220:intron 25.0%
! ATCATAAAATAGATATGCAC+GGG - chr3_2:74421551-74421570 Msa0424220:intron 25.0%
! AGGAAAAGGATTAAATGAAA+TGG + chr3_2:74421908-74421927 None:intergenic 25.0%
!!! TGCAAATCATTGTTTTGTTA+AGG + chr3_2:74421970-74421989 None:intergenic 25.0%
!! TTTGAAGTTTCAATTTCTTG+TGG + chr3_2:74422063-74422082 None:intergenic 25.0%
! CAAGAAATTGAAACTTCAAA+TGG - chr3_2:74422063-74422082 Msa0424220:intron 25.0%
! ATTAACATCAAGTCTACAAA+TGG + chr3_2:74422120-74422139 None:intergenic 25.0%
! CATTAAAAAAATTAGCAAGC+TGG + chr3_2:74422181-74422200 None:intergenic 25.0%
!!! CAGCTTGCTAATTTTTTTAA+TGG - chr3_2:74422179-74422198 Msa0424220:intron 25.0%
!! TTAAAGGTGTATGGAATAAT+AGG + chr3_2:74422310-74422329 None:intergenic 25.0%
! TAAAAGAGAATGAAATCTCT+CGG + chr3_2:74422472-74422491 None:intergenic 25.0%
! AAAATGAACAAAAGGAAATC+AGG + chr3_2:74422723-74422742 None:intergenic 25.0%
! GATGCTACAATAGAAAAAAT+TGG - chr3_2:74422816-74422835 Msa0424220:intron 25.0%
! AAACTGTTATGGTATATTGA+AGG + chr3_2:74423347-74423366 None:intergenic 25.0%
! ACAATGTAACAAAACTGTTA+TGG + chr3_2:74423358-74423377 None:intergenic 25.0%
! TTTGTTACATTGTTATGCTT+AGG - chr3_2:74423365-74423384 Msa0424220:five_prime_UTR 25.0%
GTGGCCGAATTTAATATATA+GGG + chr3_2:74420930-74420949 None:intergenic 30.0%
AGTGGCCGAATTTAATATAT+AGG + chr3_2:74420931-74420950 None:intergenic 30.0%
TTTCCCGATTATTACACATA+TGG - chr3_2:74420952-74420971 Msa0424220:CDS 30.0%
GAACCATATGTGTAATAATC+GGG + chr3_2:74420958-74420977 None:intergenic 30.0%
TATTACACATATGGTTCAAG+GGG - chr3_2:74420961-74420980 Msa0424220:CDS 30.0%
AATAGGGTTGTGATAAACTT+AGG - chr3_2:74421123-74421142 Msa0424220:intron 30.0%
ATAGGGTTGTGATAAACTTA+GGG - chr3_2:74421124-74421143 Msa0424220:intron 30.0%
!! TAGGGATATTTTTGAAGGAT+CGG - chr3_2:74421142-74421161 Msa0424220:intron 30.0%
! GAAGCGAAAATAAGTTGAAA+TGG - chr3_2:74421178-74421197 Msa0424220:intron 30.0%
!!! AGTTGAAATGGTTTTGAAAG+TGG - chr3_2:74421190-74421209 Msa0424220:intron 30.0%
!!! GTTGAAATGGTTTTGAAAGT+GGG - chr3_2:74421191-74421210 Msa0424220:intron 30.0%
! CTAATGCACTATCTAAAACT+TGG - chr3_2:74421228-74421247 Msa0424220:CDS 30.0%
TCCCTACAACTTATAATTAC+TGG - chr3_2:74421301-74421320 Msa0424220:intron 30.0%
CTGGTATAAGTTAGTAAATC+GGG - chr3_2:74421320-74421339 Msa0424220:intron 30.0%
TATTATGTTGCAAACTTGCA+AGG + chr3_2:74421367-74421386 None:intergenic 30.0%
TAAACTTGTGCAATTGTAGA+TGG - chr3_2:74421419-74421438 Msa0424220:intron 30.0%
!!! AGATGGTTTTAAGACTTATC+TGG - chr3_2:74421436-74421455 Msa0424220:intron 30.0%
TATATGAGCAATTTCAGAAC+GGG - chr3_2:74421486-74421505 Msa0424220:intron 30.0%
TCATAAAATAGATATGCACG+GGG - chr3_2:74421552-74421571 Msa0424220:intron 30.0%
! TTTTGACATTTATTGGTCAC+AGG - chr3_2:74421642-74421661 Msa0424220:CDS 30.0%
AATATTTCAAGAGGACTTCT+AGG - chr3_2:74421808-74421827 Msa0424220:intron 30.0%
ATTTATCAGACAAAGAGAGT+TGG + chr3_2:74421866-74421885 None:intergenic 30.0%
!! TCATTGTTTTGTTAAGGTCA+AGG + chr3_2:74421964-74421983 None:intergenic 30.0%
GAAATTGAAACTTCAAATGG+AGG - chr3_2:74422066-74422085 Msa0424220:intron 30.0%
! TCAACACATTTCTTTTACCA+TGG + chr3_2:74422092-74422111 None:intergenic 30.0%
TGGTAAAAGAAATGTGTTGA+TGG - chr3_2:74422092-74422111 Msa0424220:intron 30.0%
! GAAGTATTTAGAACATAGAG+TGG - chr3_2:74422399-74422418 Msa0424220:intron 30.0%
AACATAGAGTGGACATTATT+TGG - chr3_2:74422410-74422429 Msa0424220:intron 30.0%
ACATAGAGTGGACATTATTT+GGG - chr3_2:74422411-74422430 Msa0424220:intron 30.0%
TTTACTCACATTTGATCATC+TGG - chr3_2:74422503-74422522 Msa0424220:intron 30.0%
TAAGCATACATTTGCTTAAC+AGG - chr3_2:74422577-74422596 Msa0424220:intron 30.0%
!!! ATTTTAACTTTCTGGAGACA+AGG - chr3_2:74422738-74422757 Msa0424220:intron 30.0%
! ACATTTTCTCCAATCATTTC+AGG + chr3_2:74422873-74422892 None:intergenic 30.0%
TGAAATGATTGGAGAAAATG+TGG - chr3_2:74422872-74422891 Msa0424220:intron 30.0%
ATGAGTAAACATACCATTAC+CGG + chr3_2:74423027-74423046 None:intergenic 30.0%
TTATACAACTCGAAAAGAGT+CGG + chr3_2:74423188-74423207 None:intergenic 30.0%
!!! CTCTTTTCGAGTTGTATAAT+TGG - chr3_2:74423189-74423208 Msa0424220:CDS 30.0%
! TACTTCATAACCTTAGCCTT+TGG - chr3_2:74420449-74420468 Msa0424220:three_prime_UTR 35.0%
ATCTGCACTCTTGTTCTTTA+AGG - chr3_2:74420522-74420541 Msa0424220:three_prime_UTR 35.0%
ATAGGAAAGTAGAGTTGTTG+TGG + chr3_2:74420613-74420632 None:intergenic 35.0%
GTTGGATATACATGTGTTGT+GGG + chr3_2:74420644-74420663 None:intergenic 35.0%
!! CATTTTTAACTGAACAGGGT+TGG + chr3_2:74420662-74420681 None:intergenic 35.0%
TTAAACAAGGTCTTCTAGCA+GGG - chr3_2:74420835-74420854 Msa0424220:intron 35.0%
GTGTAATAATCGGGAAAAAG+TGG + chr3_2:74420949-74420968 None:intergenic 35.0%
!! ATCATAATGGGTTACCTAAC+AGG - chr3_2:74420996-74421015 Msa0424220:CDS 35.0%
!! TCATAATGGGTTACCTAACA+GGG - chr3_2:74420997-74421016 Msa0424220:CDS 35.0%
GTTGCATTAATTCAATGCCA+AGG + chr3_2:74421025-74421044 None:intergenic 35.0%
ATAGCCAACTTCTCAAATGA+AGG - chr3_2:74421259-74421278 Msa0424220:CDS 35.0%
CTTACCTTCATTTGAGAAGT+TGG + chr3_2:74421266-74421285 None:intergenic 35.0%
AGTTAGTAAATCGGGTTTAG+AGG - chr3_2:74421328-74421347 Msa0424220:intron 35.0%
GTTAGTAAATCGGGTTTAGA+GGG - chr3_2:74421329-74421348 Msa0424220:intron 35.0%
CTTATCTGGTGAGCTTAAAT+AGG - chr3_2:74421450-74421469 Msa0424220:intron 35.0%
ATATGAGCAATTTCAGAACG+GGG - chr3_2:74421487-74421506 Msa0424220:intron 35.0%
ATTGTGCATTGTAGCTAAGT+GGG + chr3_2:74421728-74421747 None:intergenic 35.0%
ACTACCACCACAAAATGAAA+AGG - chr3_2:74421758-74421777 Msa0424220:intron 35.0%
CTACCACCACAAAATGAAAA+GGG - chr3_2:74421759-74421778 Msa0424220:intron 35.0%
TACCACCACAAAATGAAAAG+GGG - chr3_2:74421760-74421779 Msa0424220:intron 35.0%
! TAGTAAGTTTTTGACCAGAC+AGG - chr3_2:74422226-74422245 Msa0424220:intron 35.0%
!! CTTTAAAGTGCCTCAAGAAT+GGG - chr3_2:74422324-74422343 Msa0424220:intron 35.0%
CTGTTAAGTTCAGTCTCAAA+TGG - chr3_2:74422372-74422391 Msa0424220:intron 35.0%
TGAAATCTCTCGGCTAAAAA+GGG + chr3_2:74422462-74422481 None:intergenic 35.0%
ATGAAATCTCTCGGCTAAAA+AGG + chr3_2:74422463-74422482 None:intergenic 35.0%
!! TTTGAGATTTTCCAGCTCTA+AGG - chr3_2:74422640-74422659 Msa0424220:intron 35.0%
ATGATTGGAGAAAATGTGGA+AGG - chr3_2:74422876-74422895 Msa0424220:intron 35.0%
TGATTGGAGAAAATGTGGAA+GGG - chr3_2:74422877-74422896 Msa0424220:intron 35.0%
TCAAATGTTGCAGAACATGA+AGG - chr3_2:74422912-74422931 Msa0424220:intron 35.0%
CAAATGTTGCAGAACATGAA+GGG - chr3_2:74422913-74422932 Msa0424220:intron 35.0%
AACTTACTATCAGTTTGAGC+TGG - chr3_2:74422938-74422957 Msa0424220:intron 35.0%
! GCCTCCTCATATTTTCATTA+CGG - chr3_2:74422962-74422981 Msa0424220:intron 35.0%
TTACACCAAACAAGTATAGG+CGG + chr3_2:74423004-74423023 None:intergenic 35.0%
!! CTATACTTGTTTGGTGTAAC+CGG - chr3_2:74423005-74423024 Msa0424220:intron 35.0%
TTACATTGTTATGCTTAGGC+AGG - chr3_2:74423369-74423388 Msa0424220:five_prime_UTR 35.0%
TACATTGTTATGCTTAGGCA+GGG - chr3_2:74423370-74423389 Msa0424220:five_prime_UTR 35.0%
! GTTATGAAGTTGATCACTCT+TGG - chr3_2:74423410-74423429 Msa0424220:five_prime_UTR 35.0%
! TGCACTCTTGTTCTTTAAGG+TGG - chr3_2:74420525-74420544 Msa0424220:three_prime_UTR 40.0%
AAGCACATCATCAATCTTCG+TGG - chr3_2:74420569-74420588 Msa0424220:three_prime_UTR 40.0%
ATCATCAATCTTCGTGGACA+TGG - chr3_2:74420575-74420594 Msa0424220:three_prime_UTR 40.0%
AAGTAGAGTTGTTGTGGACA+AGG + chr3_2:74420607-74420626 None:intergenic 40.0%
GTGTTGTGGGTTTCTTCTAT+AGG + chr3_2:74420631-74420650 None:intergenic 40.0%
GGTTGGATATACATGTGTTG+TGG + chr3_2:74420645-74420664 None:intergenic 40.0%
AGTTTGGCTGTGGTTAAACA+AGG - chr3_2:74420822-74420841 Msa0424220:intron 40.0%
GTTAAACAAGGTCTTCTAGC+AGG - chr3_2:74420834-74420853 Msa0424220:intron 40.0%
GTTAACGAACCTTGTTCATC+TGG + chr3_2:74420882-74420901 None:intergenic 40.0%
AAGGATCGGTAAGAATGAGA+GGG - chr3_2:74421156-74421175 Msa0424220:intron 40.0%
!!! AATGGTTTTGAAAGTGGGAG+TGG - chr3_2:74421196-74421215 Msa0424220:intron 40.0%
!!! ATGGTTTTGAAAGTGGGAGT+GGG - chr3_2:74421197-74421216 Msa0424220:intron 40.0%
TTGTGCATTGTAGCTAAGTG+GGG + chr3_2:74421727-74421746 None:intergenic 40.0%
CATTGTGCATTGTAGCTAAG+TGG + chr3_2:74421729-74421748 None:intergenic 40.0%
! ACTGACCCCTTTTCATTTTG+TGG + chr3_2:74421768-74421787 None:intergenic 40.0%
CAAAATGAAAAGGGGTCAGT+AGG - chr3_2:74421768-74421787 Msa0424220:intron 40.0%
ACAAAGAGAGTTGGCATAGA+AGG + chr3_2:74421857-74421876 None:intergenic 40.0%
GCAACGAATGCTTAAGGAAA+AGG + chr3_2:74421922-74421941 None:intergenic 40.0%
TTTGTTAAGGTCAAGGTGAC+AGG + chr3_2:74421957-74421976 None:intergenic 40.0%
! AAGTTTTTGACCAGACAGGT+TGG - chr3_2:74422230-74422249 Msa0424220:intron 40.0%
! TGAGGCACTTTAAAGGTGTA+TGG + chr3_2:74422319-74422338 None:intergenic 40.0%
! CCATTCTTGAGGCACTTTAA+AGG + chr3_2:74422326-74422345 None:intergenic 40.0%
!! CCTTTAAAGTGCCTCAAGAA+TGG - chr3_2:74422323-74422342 Msa0424220:intron 40.0%
ACTCACATTTGATCATCTGG+AGG - chr3_2:74422506-74422525 Msa0424220:intron 40.0%
CCAAGATCTGCTATTGATAC+AGG + chr3_2:74422605-74422624 None:intergenic 40.0%
CCTGTATCAATAGCAGATCT+TGG - chr3_2:74422602-74422621 Msa0424220:intron 40.0%
GTATCAATAGCAGATCTTGG+TGG - chr3_2:74422605-74422624 Msa0424220:intron 40.0%
!!! AGATTTTCCAGCTCTAAGGA+AGG - chr3_2:74422644-74422663 Msa0424220:intron 40.0%
AAATCAGGCTAACTCACCAT+CGG + chr3_2:74422708-74422727 None:intergenic 40.0%
! AATGCACTGATCACTTTGTC+TGG + chr3_2:74422846-74422865 None:intergenic 40.0%
GACAAAGTGATCAGTGCATT+TGG - chr3_2:74422846-74422865 Msa0424220:intron 40.0%
GCATTTGGTCCTGAAATGAT+TGG - chr3_2:74422861-74422880 Msa0424220:intron 40.0%
GCCGTAATGAAAATATGAGG+AGG + chr3_2:74422966-74422985 None:intergenic 40.0%
GTGGCCGTAATGAAAATATG+AGG + chr3_2:74422969-74422988 None:intergenic 40.0%
CGGTTACACCAAACAAGTAT+AGG + chr3_2:74423007-74423026 None:intergenic 40.0%
!! TTGTTTGGTGTAACCGGTAA+TGG - chr3_2:74423011-74423030 Msa0424220:intron 40.0%
TTGTTTATGACAGTGCAGAC+TGG + chr3_2:74423075-74423094 None:intergenic 40.0%
!! TTCCCACTACTTTTCCTGAT+TGG - chr3_2:74423279-74423298 Msa0424220:CDS 40.0%
!! TCCCACTACTTTTCCTGATT+GGG - chr3_2:74423280-74423299 Msa0424220:CDS 40.0%
TCCCAATCAGGAAAAGTAGT+GGG + chr3_2:74423284-74423303 None:intergenic 40.0%
ATCCCAATCAGGAAAAGTAG+TGG + chr3_2:74423285-74423304 None:intergenic 40.0%
GATTCACAGAAATCCCAATC+AGG + chr3_2:74423296-74423315 None:intergenic 40.0%
AAGTTGAGGTCCAAAGGCTA+AGG + chr3_2:74420462-74420481 None:intergenic 45.0%
ACATGGAAGTTGAGGTCCAA+AGG + chr3_2:74420468-74420487 None:intergenic 45.0%
TGTGCATGCTTCAGTCTCAA+AGG - chr3_2:74420695-74420714 Msa0424220:exon 45.0%
! GGTGAACAGAAGAGCAGTTT+TGG - chr3_2:74420764-74420783 Msa0424220:intron 45.0%
!!! AGAAGAGCAGTTTTGGCTTC+TGG - chr3_2:74420771-74420790 Msa0424220:intron 45.0%
!! GCTTCTGGAGTTTCCTTGTT+GGG - chr3_2:74420786-74420805 Msa0424220:intron 45.0%
! GTTTCCTTGTTGGGTTTTCC+AGG - chr3_2:74420795-74420814 Msa0424220:intron 45.0%
GAAGGATCGGTAAGAATGAG+AGG - chr3_2:74421155-74421174 Msa0424220:intron 45.0%
! CAGAACGGGGTCTTATATAC+AGG - chr3_2:74421500-74421519 Msa0424220:intron 45.0%
! GACCCCTTTTCATTTTGTGG+TGG + chr3_2:74421765-74421784 None:intergenic 45.0%
TCTGGTGCAACGAATGCTTA+AGG + chr3_2:74421928-74421947 None:intergenic 45.0%
GAAACTTCAAATGGAGGCCA+TGG - chr3_2:74422072-74422091 Msa0424220:intron 45.0%
!! TTTTTGACCAGACAGGTTGG+AGG - chr3_2:74422233-74422252 Msa0424220:intron 45.0%
TGTCCTCCTGATTTCTCATC+TGG + chr3_2:74422271-74422290 None:intergenic 45.0%
GATGAGAAATCAGGAGGACA+CGG - chr3_2:74422271-74422290 Msa0424220:intron 45.0%
ATCACCTCTTCCCATTCTTG+AGG + chr3_2:74422337-74422356 None:intergenic 45.0%
AATCTCTCGGCTAAAAAGGG+AGG + chr3_2:74422459-74422478 None:intergenic 45.0%
CCATCGGAGAATCTAAGAAC+AGG + chr3_2:74422692-74422711 None:intergenic 45.0%
CCTGTTCTTAGATTCTCCGA+TGG - chr3_2:74422689-74422708 Msa0424220:intron 45.0%
TGGAGAAAATGTGGAAGGGA+AGG - chr3_2:74422881-74422900 Msa0424220:intron 45.0%
TCTTAATTGCAGGCCTTCAG+TGG - chr3_2:74423131-74423150 Msa0424220:CDS 45.0%
TGTAGTGTCTCTTCCACTGA+AGG + chr3_2:74423147-74423166 None:intergenic 45.0%
ATTGTTATGCTTAGGCAGGG+TGG - chr3_2:74423373-74423392 Msa0424220:five_prime_UTR 45.0%
GCATCTAGTGAGTACTTAGC+AGG + chr3_2:74423450-74423469 None:intergenic 45.0%
!! TTATTAAGAAAAATATAATT+TGG + chr3_2:74420551-74420570 None:intergenic 5.0%
!! TAAAATATATTTAGTTAATA+GGG - chr3_2:74421107-74421126 Msa0424220:intron 5.0%
!! GGCTTCTGGAGTTTCCTTGT+TGG - chr3_2:74420785-74420804 Msa0424220:intron 50.0%
CACTCCTGGAAAACCCAACA+AGG + chr3_2:74420802-74420821 None:intergenic 50.0%
! GGGTTTTCCAGGAGTGAGTT+TGG - chr3_2:74420806-74420825 Msa0424220:intron 50.0%
CTTCTAGCAGGGAGAATTCC+TGG - chr3_2:74420846-74420865 Msa0424220:intron 50.0%
CTGTCTGAGCCAGATGAACA+AGG - chr3_2:74420870-74420889 Msa0424220:intron 50.0%
GAGAGTTGGCATAGAAGGCT+TGG + chr3_2:74421852-74421871 None:intergenic 50.0%
CAAGGTGACAGGAACAGTTC+TGG + chr3_2:74421946-74421965 None:intergenic 50.0%
GATATGTCCTCCAACCTGTC+TGG + chr3_2:74422243-74422262 None:intergenic 50.0%
AGGCCAGATGAGAAATCAGG+AGG - chr3_2:74422265-74422284 Msa0424220:intron 50.0%
AAATCAGGAGGACACGGTGT+TGG - chr3_2:74422277-74422296 Msa0424220:intron 50.0%
AGTGCCTCAAGAATGGGAAG+AGG - chr3_2:74422330-74422349 Msa0424220:intron 50.0%
! GCACTGATCACTTTGTCTGG+AGG + chr3_2:74422843-74422862 None:intergenic 50.0%
GGCAACCGCCTATACTTGTT+TGG - chr3_2:74422996-74423015 Msa0424220:intron 50.0%
TCCAGGAGTGAGTTTGGCTG+TGG - chr3_2:74420812-74420831 Msa0424220:intron 55.0%
ACCACAGCCAAACTCACTCC+TGG + chr3_2:74420816-74420835 None:intergenic 55.0%
! TCATCTGGCTCAGACAGACC+AGG + chr3_2:74420867-74420886 None:intergenic 55.0%
! GGTTACCTAACAGGGTGCCT+TGG - chr3_2:74421005-74421024 Msa0424220:CDS 55.0%
! CAATGCCAAGGCACCCTGTT+AGG + chr3_2:74421013-74421032 None:intergenic 55.0%
! CAGGTTGGAGGACATATCGC+AGG - chr3_2:74422245-74422264 Msa0424220:intron 55.0%
CGCAGGCCAGATGAGAAATC+AGG - chr3_2:74422262-74422281 Msa0424220:intron 55.0%
CTCTCGGCTAAAAAGGGAGG+AGG + chr3_2:74422456-74422475 None:intergenic 55.0%
CAGACGTCCTTCCTTAGAGC+TGG + chr3_2:74422654-74422673 None:intergenic 55.0%
! CAGGAGGACACGGTGTTGGA+TGG - chr3_2:74422281-74422300 Msa0424220:intron 60.0%
TTCATTACGGCCACCGCTGC+TGG - chr3_2:74422975-74422994 Msa0424220:intron 60.0%
GTATAGGCGGTTGCCAGCAG+CGG + chr3_2:74422991-74423010 None:intergenic 60.0%
TAGGCGGTTGCCAGCAGCGG+TGG + chr3_2:74422988-74423007 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 74420438 74423479 74420438 ID=Msa0424220;Name=Msa0424220
chr3_2 mRNA 74420438 74423479 74420438 ID=Msa0424220-mRNA-1;Parent=Msa0424220;Name=Msa0424220-mRNA-1;_AED=0.10;_eAED=0.10;_QI=156|1|1|1|1|1|5|272|268
chr3_2 exon 74420438 74420774 74420438 ID=Msa0424220-mRNA-1:exon:18783;Parent=Msa0424220-mRNA-1
chr3_2 exon 74420885 74421112 74420885 ID=Msa0424220-mRNA-1:exon:18782;Parent=Msa0424220-mRNA-1
chr3_2 exon 74421207 74421318 74421207 ID=Msa0424220-mRNA-1:exon:18781;Parent=Msa0424220-mRNA-1
chr3_2 exon 74421566 74421669 74421566 ID=Msa0424220-mRNA-1:exon:18780;Parent=Msa0424220-mRNA-1
chr3_2 exon 74423026 74423479 74423026 ID=Msa0424220-mRNA-1:exon:18779;Parent=Msa0424220-mRNA-1
chr3_2 five_prime_UTR 74423324 74423479 74423324 ID=Msa0424220-mRNA-1:five_prime_utr;Parent=Msa0424220-mRNA-1
chr3_2 CDS 74423026 74423323 74423026 ID=Msa0424220-mRNA-1:cds;Parent=Msa0424220-mRNA-1
chr3_2 CDS 74421566 74421669 74421566 ID=Msa0424220-mRNA-1:cds;Parent=Msa0424220-mRNA-1
chr3_2 CDS 74421207 74421318 74421207 ID=Msa0424220-mRNA-1:cds;Parent=Msa0424220-mRNA-1
chr3_2 CDS 74420885 74421112 74420885 ID=Msa0424220-mRNA-1:cds;Parent=Msa0424220-mRNA-1
chr3_2 CDS 74420710 74420774 74420710 ID=Msa0424220-mRNA-1:cds;Parent=Msa0424220-mRNA-1
chr3_2 three_prime_UTR 74420438 74420709 74420438 ID=Msa0424220-mRNA-1:three_prime_utr;Parent=Msa0424220-mRNA-1
Gene Sequence

>Msa0424220

ATGGCAACATCCTTGTCCACAACAACTCTACTTTCCTATAGAAGAAACCCACAACACATGTATATCCAACCCTGTTCAGTTAAAAATGAAGTTTCAAGAACTGTGCATGCTTCAGTCTCAAAGGACAGTTTATCAATCAATGAAGAGAGTGATAAATGTTCATCTTTGTTGGTGAACAGAAGAGCAGTTTTGGCTTCTGGAGTTTCCTTGTTGGGTTTTCCAGGAGTGAGTTTGGCTGTGGTTAAACAAGGTCTTCTAGCAGGGAGAATTCCTGGTCTGTCTGAGCCAGATGAACAAGGTTGGAGGACATATCGCAGGCCAGATGAGAAATCAGGAGGACACGGTGTTGGATGGAGTCCTATTATTCCATACACCTTTAAAGTGCCTCAAGAATGGGAAGAGGTACCTGTATCAATAGCAGATCTTGGTGGAACAGAGTTAGATTTGAGATTTTCCAGCTCTAAGGAAGGACGTCTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGTTATTGGTGATGATGCTACAATAGAAAAAATTGGACCTCCAGACAAAGTGATCAGTGCATTTGGTCCTGAAATGATTGGAGAAAATGTGGAAGGGAAGGTTCTTAGTTCAAATGTTGCAGAACATGAAGGGAGAACTTACTATCAGTTTGAGCTGGAGCCTCCTCATATTTTCATTACGGCCACCGCTGCTGGCAACCGCCTATACTTGTTTGGTGTAACCGGTAATGGCCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATATCCGACTCTTTTCGAGTTGTATAA

Protein sequence

>Msa0424220

MATSLSTTTLLSYRRNPQHMYIQPCSVKNEVSRTVHASVSKDSLSINEESDKCSSLLVNRRAVLASGVSLLGFPGVSLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPVSIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDVIGDDATIEKIGPPDKVISAFGPEMIGENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYNDLKKISDSFRVV*