AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379270 MtrunA17_Chr3g0125881 98.134 268 5 0 1 268 1 268 0.0 543
Msa1379270 MtrunA17_Chr6g0457731 91.379 58 5 0 162 219 1 58 8.52e-33 114
Msa1379270 MtrunA17_Chr7g0255661 31.707 164 91 6 121 267 100 259 1.10e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379270 AT1G77090.1 77.232 224 46 2 49 268 38 260 2.52e-126 360
Msa1379270 AT3G56650.1 30.247 162 92 6 123 267 105 262 6.84e-18 81.3

Find 87 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCACTCTTGTTCTTTA+AGG 0.103321 tig0020278:+53513 Msa1379270:five_prime_UTR
TCACTAGATGCTATTCTTTC+AGG 0.166955 tig0020278:+56444 Msa1379270:three_prime_UTR
CCATTCTTGAGGCACTTTAA+AGG 0.210920 tig0020278:-55308 None:intergenic
TTAAAGGTGTATGGAATAAT+AGG 0.298400 tig0020278:-55292 None:intergenic
GGTGAACAGAAGAGCAGTTT+TGG 0.313029 tig0020278:+53755 Msa1379270:CDS
GTGTTGTGGGTTTCTTCTAT+AGG 0.339103 tig0020278:-53619 None:intergenic
GCTTCTGGAGTTTCCTTGTT+GGG 0.353626 tig0020278:+53777 Msa1379270:CDS
TACTTCATAACCTTAGCCTT+TGG 0.356614 tig0020278:+53440 Msa1379270:five_prime_UTR
GGCTTCTGGAGTTTCCTTGT+TGG 0.366718 tig0020278:+53776 Msa1379270:CDS
TGTCCTCCTGATTTCTCATC+TGG 0.374249 tig0020278:-55253 None:intergenic
CTATACTTGTTTGGTGTAAC+CGG 0.376509 tig0020278:+55990 Msa1379270:CDS
CTTCTAGCAGGGAGAATTCC+TGG 0.384668 tig0020278:+53837 Msa1379270:CDS
TGAGGCACTTTAAAGGTGTA+TGG 0.385118 tig0020278:-55301 None:intergenic
TTCATTACGGCCACCGCTGC+TGG 0.392527 tig0020278:+55960 Msa1379270:CDS
TTGTTTGGTGTAACCGGTAA+TGG 0.408086 tig0020278:+55996 Msa1379270:CDS
TTACATTGTTATGCTTAGGC+AGG 0.414782 tig0020278:+56354 Msa1379270:three_prime_UTR
GGCAACCGCCTATACTTGTT+TGG 0.416295 tig0020278:+55981 Msa1379270:CDS
ACAATGTAACAAAACTGTTA+TGG 0.423744 tig0020278:-56340 None:intergenic
GACAAAGTGATCAGTGCATT+TGG 0.425180 tig0020278:+55831 Msa1379270:CDS
GTTAACGAACCTTGTTCATC+TGG 0.425267 tig0020278:-53870 None:intergenic
ATGAGTAAACATACCATTAC+CGG 0.428524 tig0020278:-56009 None:intergenic
AATGCACTGATCACTTTGTC+TGG 0.429585 tig0020278:-55828 None:intergenic
CGCAGGCCAGATGAGAAATC+AGG 0.439964 tig0020278:+55247 Msa1379270:CDS
GTTATGAAGTTGATCACTCT+TGG 0.444783 tig0020278:+56395 Msa1379270:three_prime_UTR
TGATAAATGTTCATCTTTGT+TGG 0.447757 tig0020278:+53734 Msa1379270:CDS
CGGTTACACCAAACAAGTAT+AGG 0.450219 tig0020278:-55989 None:intergenic
TGCACTCTTGTTCTTTAAGG+TGG 0.451949 tig0020278:+53516 Msa1379270:five_prime_UTR
CCTTTAAAGTGCCTCAAGAA+TGG 0.454989 tig0020278:+55308 Msa1379270:CDS
GTTGGATATACATGTGTTGT+GGG 0.458582 tig0020278:-53632 None:intergenic
CCAAGATCTGCTATTGATAC+AGG 0.460727 tig0020278:-55587 None:intergenic
TCCAGGAGTGAGTTTGGCTG+TGG 0.472811 tig0020278:+53803 Msa1379270:CDS
CTTTAAAGTGCCTCAAGAAT+GGG 0.477276 tig0020278:+55309 Msa1379270:CDS
GCATTTGGTCCTGAAATGAT+TGG 0.486722 tig0020278:+55846 Msa1379270:CDS
ACCACAGCCAAACTCACTCC+TGG 0.493815 tig0020278:-53804 None:intergenic
GTTAAACAAGGTCTTCTAGC+AGG 0.494158 tig0020278:+53825 Msa1379270:CDS
GATTCACAGAAATCCCAATC+AGG 0.494640 tig0020278:-56278 None:intergenic
TATGAAGTAAAAGATATTTG+TGG 0.500616 tig0020278:-53426 None:intergenic
CCTGTATCAATAGCAGATCT+TGG 0.502162 tig0020278:+55587 Msa1379270:CDS
CCATCGGAGAATCTAAGAAC+AGG 0.502404 tig0020278:-55674 None:intergenic
AACTTACTATCAGTTTGAGC+TGG 0.504221 tig0020278:+55923 Msa1379270:CDS
AAGCACATCATCAATCTTCG+TGG 0.509428 tig0020278:+53560 Msa1379270:five_prime_UTR
ATCATCAATCTTCGTGGACA+TGG 0.513825 tig0020278:+53566 Msa1379270:exon
GCATCTAGTGAGTACTTAGC+AGG 0.517495 tig0020278:-56432 None:intergenic
AAGTAGAGTTGTTGTGGACA+AGG 0.522596 tig0020278:-53595 None:intergenic
TGTAGTGTCTCTTCCACTGA+AGG 0.524498 tig0020278:-56129 None:intergenic
CAGGAGGACATGGTGTTGGA+TGG 0.529020 tig0020278:+55266 Msa1379270:CDS
ATAGGAAAGTAGAGTTGTTG+TGG 0.538638 tig0020278:-53601 None:intergenic
TAGGCGGTTGCCAGCAGCGG+TGG 0.539049 tig0020278:-55970 None:intergenic
CAGACGTCCTTCCTTAGAGC+TGG 0.541704 tig0020278:-55636 None:intergenic
TCAAATGTTGCAGAACATGA+AGG 0.543778 tig0020278:+55897 Msa1379270:CDS
TGGAGAAAATGTGGAAGGGA+AGG 0.549881 tig0020278:+55866 Msa1379270:CDS
TACATTGTTATGCTTAGGCA+GGG 0.550256 tig0020278:+56355 Msa1379270:three_prime_UTR
TCTTAATTGCAGGCCTTCAG+TGG 0.551749 tig0020278:+56116 Msa1379270:intron
AAACTGTTATGGTATATTGA+AGG 0.553878 tig0020278:-56329 None:intergenic
GGTTGGATATACATGTGTTG+TGG 0.559670 tig0020278:-53633 None:intergenic
TTTGTTACATTGTTATGCTT+AGG 0.563767 tig0020278:+56350 Msa1379270:three_prime_UTR
TGAAATGATTGGAGAAAATG+TGG 0.574438 tig0020278:+55857 Msa1379270:CDS
ACATGGAAGTTGAGGTCCAA+AGG 0.575208 tig0020278:-53456 None:intergenic
GTGGCCGTAATGAAAATATG+AGG 0.575485 tig0020278:-55951 None:intergenic
AAATCAGGAGGACATGGTGT+TGG 0.577495 tig0020278:+55262 Msa1379270:CDS
ATCACCTCTTCCCATTCTTG+AGG 0.579716 tig0020278:-55319 None:intergenic
CACTCCTGGAAAACCCAACA+AGG 0.583287 tig0020278:-53790 None:intergenic
AAATATTAACATGGAAGTTG+AGG 0.583993 tig0020278:-53464 None:intergenic
CAGGTTGGAGGACATATCGC+AGG 0.585205 tig0020278:+55230 Msa1379270:intron
GTATCAATAGCAGATCTTGG+TGG 0.585808 tig0020278:+55590 Msa1379270:CDS
TGTGCATGCTTCAGTCTCAA+AGG 0.591583 tig0020278:+53686 Msa1379270:CDS
TCCCAATCAGGAAAAGTAGT+GGG 0.596078 tig0020278:-56266 None:intergenic
CTGTCTGAGCCAGATGAACA+AGG 0.596600 tig0020278:+53861 Msa1379270:CDS
ATCCCAATCAGGAAAAGTAG+TGG 0.597996 tig0020278:-56267 None:intergenic
GTATAGGCGGTTGCCAGCAG+CGG 0.599408 tig0020278:-55973 None:intergenic
CAAATGTTGCAGAACATGAA+GGG 0.602320 tig0020278:+55898 Msa1379270:CDS
AAGTTGAGGTCCAAAGGCTA+AGG 0.605211 tig0020278:-53450 None:intergenic
GATGAGAAATCAGGAGGACA+TGG 0.611956 tig0020278:+55256 Msa1379270:CDS
AGTTTGGCTGTGGTTAAACA+AGG 0.615204 tig0020278:+53813 Msa1379270:CDS
CCTGTTCTTAGATTCTCCGA+TGG 0.616850 tig0020278:+55674 Msa1379270:CDS
TCATCTGGCTCAGACAGACC+AGG 0.619141 tig0020278:-53855 None:intergenic
TTATACAACTCGAAAAGAGT+CGG 0.622471 tig0020278:-56170 None:intergenic
ATGATTGGAGAAAATGTGGA+AGG 0.623515 tig0020278:+55861 Msa1379270:CDS
AGTGCCTCAAGAATGGGAAG+AGG 0.627362 tig0020278:+55315 Msa1379270:CDS
TTAAACAAGGTCTTCTAGCA+GGG 0.627829 tig0020278:+53826 Msa1379270:CDS
ATTGTTATGCTTAGGCAGGG+TGG 0.627880 tig0020278:+56358 Msa1379270:three_prime_UTR
AAGTAGTGGAAATATTAACA+TGG 0.631287 tig0020278:-53473 None:intergenic
GCACTGATCACTTTGTCTGG+AGG 0.652054 tig0020278:-55825 None:intergenic
TGATTGGAGAAAATGTGGAA+GGG 0.655080 tig0020278:+55862 Msa1379270:CDS
GCCGTAATGAAAATATGAGG+AGG 0.673890 tig0020278:-55948 None:intergenic
AGGCCAGATGAGAAATCAGG+AGG 0.693963 tig0020278:+55250 Msa1379270:CDS
TTACACCAAACAAGTATAGG+CGG 0.725370 tig0020278:-55986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATATATTTAGTTAAT+AGG + tig0020278:54097-54116 Msa1379270:intron 10.0%
!!! TATTATGCATAAATATTTTT+TGG + tig0020278:54610-54629 Msa1379270:intron 10.0%
!! AAAACATATATATAATTAAG+TGG + tig0020278:54656-54675 Msa1379270:intron 10.0%
!! AAACATATATATAATTAAGT+GGG + tig0020278:54657-54676 Msa1379270:intron 10.0%
!!! TTTTCCCTATATATTAAATT+CGG + tig0020278:53914-53933 Msa1379270:intron 15.0%
!!! TCAAATTTTGAAATCATAAT+GGG + tig0020278:53975-53994 Msa1379270:intron 15.0%
!!! AAGAAGTGTAATAAAAAAAT+TGG + tig0020278:54041-54060 Msa1379270:intron 15.0%
!!! AGAAGTGTAATAAAAAAATT+GGG + tig0020278:54042-54061 Msa1379270:intron 15.0%
!! TAATAAAAAAATTGGGAATT+TGG + tig0020278:54049-54068 Msa1379270:intron 15.0%
!! AATAAAAAAATTGGGAATTT+GGG + tig0020278:54050-54069 Msa1379270:intron 15.0%
!!! TCTATTTTATGATGTTTTTA+GGG - tig0020278:54529-54548 None:intergenic 15.0%
!!! ATCTATTTTATGATGTTTTT+AGG - tig0020278:54530-54549 None:intergenic 15.0%
!!! AAATATTTTTTGGCATTTAT+TGG + tig0020278:54620-54639 Msa1379270:intron 15.0%
!! AACATATATATAATTAAGTG+GGG + tig0020278:54658-54677 Msa1379270:intron 15.0%
!! ATAAATAAAATCATTTGCAA+CGG - tig0020278:54993-55012 None:intergenic 15.0%
!!! ATTTCATATTTTCAATTCAT+TGG - tig0020278:56205-56224 None:intergenic 15.0%
!! ATAACATTCATAAAAAGTAG+TGG - tig0020278:53490-53509 None:intergenic 20.0%
!!! GTCAAATTTTGAAATCATAA+TGG + tig0020278:53974-53993 Msa1379270:intron 20.0%
!! AAATTGCTCATATATAGTTA+TGG - tig0020278:54465-54484 None:intergenic 20.0%
!! ACATATATATAATTAAGTGG+GGG + tig0020278:54659-54678 Msa1379270:intron 20.0%
!! TTATTTGACAATATTTCAAG+AGG + tig0020278:54784-54803 Msa1379270:intron 20.0%
!! AGAAAGTTAAAATGAACAAA+AGG - tig0020278:55716-55735 None:intergenic 20.0%
!!! TTTTGTTCATTTTAACTTTC+TGG + tig0020278:55715-55734 Msa1379270:intron 20.0%
!! AATCTTTAATATGCAGTTAT+TGG + tig0020278:55774-55793 Msa1379270:intron 20.0%
!! TAGAAAATAATCTTAATTGC+AGG + tig0020278:56106-56125 Msa1379270:intron 20.0%
! AAATATTAACATGGAAGTTG+AGG - tig0020278:53467-53486 None:intergenic 25.0%
!! AAGTAGTGGAAATATTAACA+TGG - tig0020278:53476-53495 None:intergenic 25.0%
!!! ACTTCATTTTTAACTGAACA+GGG - tig0020278:53657-53676 None:intergenic 25.0%
!!! AACTTCATTTTTAACTGAAC+AGG - tig0020278:53658-53677 None:intergenic 25.0%
! TGATAAATGTTCATCTTTGT+TGG + tig0020278:53734-53753 Msa1379270:CDS 25.0%
! TGAACCATATGTGTAATAAT+CGG - tig0020278:53950-53969 None:intergenic 25.0%
! ATTATTACACATATGGTTCA+AGG + tig0020278:53950-53969 Msa1379270:intron 25.0%
! TTATTACACATATGGTTCAA+GGG + tig0020278:53951-53970 Msa1379270:intron 25.0%
!!! CAAAACTTTTAGAAAACAAG+TGG - tig0020278:54078-54097 None:intergenic 25.0%
!!! AAACTTAGGGATATTTTTGA+AGG + tig0020278:54128-54147 Msa1379270:intron 25.0%
!! TAATGCACTATCTAAAACTT+GGG + tig0020278:54214-54233 Msa1379270:intron 25.0%
! ACCAGTAATTATAAGTTGTA+GGG - tig0020278:54290-54309 None:intergenic 25.0%
! TACCAGTAATTATAAGTTGT+AGG - tig0020278:54291-54310 None:intergenic 25.0%
! ACTGGTATAAGTTAGTAAAT+CGG + tig0020278:54304-54323 Msa1379270:intron 25.0%
!! TCATAATACTGTTGTAGTTT+TGG + tig0020278:54364-54383 Msa1379270:intron 25.0%
! ATATATGAGCAATTTCAGAA+CGG + tig0020278:54470-54489 Msa1379270:intron 25.0%
! CATCATAAAATAGATATGCA+CGG + tig0020278:54535-54554 Msa1379270:intron 25.0%
! ATCATAAAATAGATATGCAC+GGG + tig0020278:54536-54555 Msa1379270:intron 25.0%
! AGGAAAAGGATTAAATGAAA+TGG - tig0020278:54893-54912 None:intergenic 25.0%
!!! TGCAAATCATTGTTTTGTTA+AGG - tig0020278:54955-54974 None:intergenic 25.0%
!! TTTGAAGTTTCAATTTCTTG+TGG - tig0020278:55048-55067 None:intergenic 25.0%
! CAAGAAATTGAAACTTCAAA+TGG + tig0020278:55048-55067 Msa1379270:intron 25.0%
! ATTAACATCAAGTCTACAAA+TGG - tig0020278:55105-55124 None:intergenic 25.0%
! CATTAAAAAAATTAGCAAGC+TGG - tig0020278:55166-55185 None:intergenic 25.0%
!!! CAGCTTGCTAATTTTTTTAA+TGG + tig0020278:55164-55183 Msa1379270:intron 25.0%
!! TTAAAGGTGTATGGAATAAT+AGG - tig0020278:55295-55314 None:intergenic 25.0%
! TAAAAGAGAATGAAATCTCT+CGG - tig0020278:55457-55476 None:intergenic 25.0%
! AAAATGAACAAAAGGAAATC+AGG - tig0020278:55708-55727 None:intergenic 25.0%
! GATGCTACAATAGAAAAAAT+TGG + tig0020278:55801-55820 Msa1379270:CDS 25.0%
! AAACTGTTATGGTATATTGA+AGG - tig0020278:56332-56351 None:intergenic 25.0%
! ACAATGTAACAAAACTGTTA+TGG - tig0020278:56343-56362 None:intergenic 25.0%
! TTTGTTACATTGTTATGCTT+AGG + tig0020278:56350-56369 Msa1379270:three_prime_UTR 25.0%
GTGGCCGAATTTAATATATA+GGG - tig0020278:53921-53940 None:intergenic 30.0%
AGTGGCCGAATTTAATATAT+AGG - tig0020278:53922-53941 None:intergenic 30.0%
TTTCCCGATTATTACACATA+TGG + tig0020278:53943-53962 Msa1379270:intron 30.0%
GAACCATATGTGTAATAATC+GGG - tig0020278:53949-53968 None:intergenic 30.0%
TATTACACATATGGTTCAAG+GGG + tig0020278:53952-53971 Msa1379270:intron 30.0%
AATAGGGTTGTGATAAACTT+AGG + tig0020278:54114-54133 Msa1379270:intron 30.0%
ATAGGGTTGTGATAAACTTA+GGG + tig0020278:54115-54134 Msa1379270:intron 30.0%
!! TAGGGATATTTTTGAAGGAT+CGG + tig0020278:54133-54152 Msa1379270:intron 30.0%
! GAAGCGAAAATAAGTTGAAA+TGG + tig0020278:54169-54188 Msa1379270:intron 30.0%
!!! AGTTGAAATGGTTTTGAAAG+TGG + tig0020278:54181-54200 Msa1379270:intron 30.0%
!!! GTTGAAATGGTTTTGAAAGT+GGG + tig0020278:54182-54201 Msa1379270:intron 30.0%
! CTAATGCACTATCTAAAACT+TGG + tig0020278:54213-54232 Msa1379270:intron 30.0%
TCCCTACAACTTATAATTAC+TGG + tig0020278:54286-54305 Msa1379270:intron 30.0%
CTGGTATAAGTTAGTAAATC+GGG + tig0020278:54305-54324 Msa1379270:intron 30.0%
TATTATGATGCAAACTTGCA+AGG - tig0020278:54352-54371 None:intergenic 30.0%
TAAACTTGTGCAATTGTAGA+TGG + tig0020278:54404-54423 Msa1379270:intron 30.0%
!!! AGATGGTTTTAAGACTTATC+TGG + tig0020278:54421-54440 Msa1379270:intron 30.0%
TATATGAGCAATTTCAGAAC+GGG + tig0020278:54471-54490 Msa1379270:intron 30.0%
TCATAAAATAGATATGCACG+GGG + tig0020278:54537-54556 Msa1379270:intron 30.0%
AATATTTCAAGAGGACTTCT+AGG + tig0020278:54793-54812 Msa1379270:intron 30.0%
ATTTATCAGACAAAGAGAGT+TGG - tig0020278:54851-54870 None:intergenic 30.0%
!! TCATTGTTTTGTTAAGGTCA+AGG - tig0020278:54949-54968 None:intergenic 30.0%
GAAATTGAAACTTCAAATGG+AGG + tig0020278:55051-55070 Msa1379270:intron 30.0%
! TCAACACATTTCTTTTACCA+TGG - tig0020278:55077-55096 None:intergenic 30.0%
TGGTAAAAGAAATGTGTTGA+TGG + tig0020278:55077-55096 Msa1379270:intron 30.0%
! GAAGTATTTAGAACATAGAG+TGG + tig0020278:55384-55403 Msa1379270:intron 30.0%
AACATAGAGTGGACATTATT+TGG + tig0020278:55395-55414 Msa1379270:intron 30.0%
ACATAGAGTGGACATTATTT+GGG + tig0020278:55396-55415 Msa1379270:intron 30.0%
TTTACTCACATTTGATCATC+TGG + tig0020278:55488-55507 Msa1379270:intron 30.0%
TAAGCATACATTTGCTTAAC+AGG + tig0020278:55562-55581 Msa1379270:intron 30.0%
!!! ATTTTAACTTTCTGGAGACA+AGG + tig0020278:55723-55742 Msa1379270:intron 30.0%
! ACATTTTCTCCAATCATTTC+AGG - tig0020278:55858-55877 None:intergenic 30.0%
TGAAATGATTGGAGAAAATG+TGG + tig0020278:55857-55876 Msa1379270:CDS 30.0%
ATGAGTAAACATACCATTAC+CGG - tig0020278:56012-56031 None:intergenic 30.0%
TTATACAACTCGAAAAGAGT+CGG - tig0020278:56173-56192 None:intergenic 30.0%
!!! CTCTTTTCGAGTTGTATAAT+TGG + tig0020278:56174-56193 Msa1379270:exon 30.0%
! TACTTCATAACCTTAGCCTT+TGG + tig0020278:53440-53459 Msa1379270:five_prime_UTR 35.0%
ATCTGCACTCTTGTTCTTTA+AGG + tig0020278:53513-53532 Msa1379270:five_prime_UTR 35.0%
ATAGGAAAGTAGAGTTGTTG+TGG - tig0020278:53604-53623 None:intergenic 35.0%
GTTGGATATACATGTGTTGT+GGG - tig0020278:53635-53654 None:intergenic 35.0%
!! CATTTTTAACTGAACAGGGT+TGG - tig0020278:53653-53672 None:intergenic 35.0%
TTAAACAAGGTCTTCTAGCA+GGG + tig0020278:53826-53845 Msa1379270:CDS 35.0%
GTGTAATAATCGGGAAAAAG+TGG - tig0020278:53940-53959 None:intergenic 35.0%
!! ATCATAATGGGTTACCTAAC+AGG + tig0020278:53987-54006 Msa1379270:intron 35.0%
!! TCATAATGGGTTACCTAACA+GGG + tig0020278:53988-54007 Msa1379270:intron 35.0%
GTTGCATTAATTCAATGCCA+AGG - tig0020278:54016-54035 None:intergenic 35.0%
ATAGCCAACTTCTCAAATGA+AGG + tig0020278:54244-54263 Msa1379270:intron 35.0%
CTTACCTTCATTTGAGAAGT+TGG - tig0020278:54251-54270 None:intergenic 35.0%
AGTTAGTAAATCGGGTTTAG+AGG + tig0020278:54313-54332 Msa1379270:intron 35.0%
GTTAGTAAATCGGGTTTAGA+GGG + tig0020278:54314-54333 Msa1379270:intron 35.0%
CTTATCTGGTGAGCTTAAAT+AGG + tig0020278:54435-54454 Msa1379270:intron 35.0%
ATATGAGCAATTTCAGAACG+GGG + tig0020278:54472-54491 Msa1379270:intron 35.0%
! TTTTGGCATTTATTGGTCAC+AGG + tig0020278:54627-54646 Msa1379270:intron 35.0%
ATTGTGCATTGTAGCTAAGT+GGG - tig0020278:54713-54732 None:intergenic 35.0%
ACTACCACCACAAAATGAAA+AGG + tig0020278:54743-54762 Msa1379270:intron 35.0%
CTACCACCACAAAATGAAAA+GGG + tig0020278:54744-54763 Msa1379270:intron 35.0%
TACCACCACAAAATGAAAAG+GGG + tig0020278:54745-54764 Msa1379270:intron 35.0%
! TAGTAAGTTTTTGACCAGAC+AGG + tig0020278:55211-55230 Msa1379270:intron 35.0%
!! CTTTAAAGTGCCTCAAGAAT+GGG + tig0020278:55309-55328 Msa1379270:CDS 35.0%
CTGTTAAGTTCAGTCTCAAA+TGG + tig0020278:55357-55376 Msa1379270:intron 35.0%
TGAAATCTCTCGGCTAAAAA+GGG - tig0020278:55447-55466 None:intergenic 35.0%
ATGAAATCTCTCGGCTAAAA+AGG - tig0020278:55448-55467 None:intergenic 35.0%
!! TTTGAGATTTTCCAGCTCTA+AGG + tig0020278:55625-55644 Msa1379270:CDS 35.0%
ATGATTGGAGAAAATGTGGA+AGG + tig0020278:55861-55880 Msa1379270:CDS 35.0%
TGATTGGAGAAAATGTGGAA+GGG + tig0020278:55862-55881 Msa1379270:CDS 35.0%
TCAAATGTTGCAGAACATGA+AGG + tig0020278:55897-55916 Msa1379270:CDS 35.0%
CAAATGTTGCAGAACATGAA+GGG + tig0020278:55898-55917 Msa1379270:CDS 35.0%
AACTTACTATCAGTTTGAGC+TGG + tig0020278:55923-55942 Msa1379270:CDS 35.0%
! GCCTCCTCATATTTTCATTA+CGG + tig0020278:55947-55966 Msa1379270:CDS 35.0%
TTACACCAAACAAGTATAGG+CGG - tig0020278:55989-56008 None:intergenic 35.0%
!! CTATACTTGTTTGGTGTAAC+CGG + tig0020278:55990-56009 Msa1379270:CDS 35.0%
TTACATTGTTATGCTTAGGC+AGG + tig0020278:56354-56373 Msa1379270:three_prime_UTR 35.0%
TACATTGTTATGCTTAGGCA+GGG + tig0020278:56355-56374 Msa1379270:three_prime_UTR 35.0%
! GTTATGAAGTTGATCACTCT+TGG + tig0020278:56395-56414 Msa1379270:three_prime_UTR 35.0%
! TGCACTCTTGTTCTTTAAGG+TGG + tig0020278:53516-53535 Msa1379270:five_prime_UTR 40.0%
AAGCACATCATCAATCTTCG+TGG + tig0020278:53560-53579 Msa1379270:five_prime_UTR 40.0%
ATCATCAATCTTCGTGGACA+TGG + tig0020278:53566-53585 Msa1379270:exon 40.0%
AAGTAGAGTTGTTGTGGACA+AGG - tig0020278:53598-53617 None:intergenic 40.0%
GTGTTGTGGGTTTCTTCTAT+AGG - tig0020278:53622-53641 None:intergenic 40.0%
GGTTGGATATACATGTGTTG+TGG - tig0020278:53636-53655 None:intergenic 40.0%
AGTTTGGCTGTGGTTAAACA+AGG + tig0020278:53813-53832 Msa1379270:CDS 40.0%
GTTAAACAAGGTCTTCTAGC+AGG + tig0020278:53825-53844 Msa1379270:CDS 40.0%
GTTAACGAACCTTGTTCATC+TGG - tig0020278:53873-53892 None:intergenic 40.0%
AAGGATCGGTAAGAATGAGA+GGG + tig0020278:54147-54166 Msa1379270:intron 40.0%
TTGTGCATTGTAGCTAAGTG+GGG - tig0020278:54712-54731 None:intergenic 40.0%
CATTGTGCATTGTAGCTAAG+TGG - tig0020278:54714-54733 None:intergenic 40.0%
! AGTGACCCCTTTTCATTTTG+TGG - tig0020278:54753-54772 None:intergenic 40.0%
CAAAATGAAAAGGGGTCACT+AGG + tig0020278:54753-54772 Msa1379270:intron 40.0%
ACAAAGAGAGTTGGCATAGA+AGG - tig0020278:54842-54861 None:intergenic 40.0%
GCAACGAATGCTTAAGGAAA+AGG - tig0020278:54907-54926 None:intergenic 40.0%
TTTGTTAAGGTCAAGGTGAC+AGG - tig0020278:54942-54961 None:intergenic 40.0%
! AAGTTTTTGACCAGACAGGT+TGG + tig0020278:55215-55234 Msa1379270:intron 40.0%
! TGAGGCACTTTAAAGGTGTA+TGG - tig0020278:55304-55323 None:intergenic 40.0%
! CCATTCTTGAGGCACTTTAA+AGG - tig0020278:55311-55330 None:intergenic 40.0%
!! CCTTTAAAGTGCCTCAAGAA+TGG + tig0020278:55308-55327 Msa1379270:CDS 40.0%
ACTCACATTTGATCATCTGG+AGG + tig0020278:55491-55510 Msa1379270:intron 40.0%
CCAAGATCTGCTATTGATAC+AGG - tig0020278:55590-55609 None:intergenic 40.0%
CCTGTATCAATAGCAGATCT+TGG + tig0020278:55587-55606 Msa1379270:CDS 40.0%
GTATCAATAGCAGATCTTGG+TGG + tig0020278:55590-55609 Msa1379270:CDS 40.0%
!!! AGATTTTCCAGCTCTAAGGA+AGG + tig0020278:55629-55648 Msa1379270:CDS 40.0%
AAATCAGGCTAACTCACCAT+CGG - tig0020278:55693-55712 None:intergenic 40.0%
! AATGCACTGATCACTTTGTC+TGG - tig0020278:55831-55850 None:intergenic 40.0%
GACAAAGTGATCAGTGCATT+TGG + tig0020278:55831-55850 Msa1379270:CDS 40.0%
GCATTTGGTCCTGAAATGAT+TGG + tig0020278:55846-55865 Msa1379270:CDS 40.0%
GCCGTAATGAAAATATGAGG+AGG - tig0020278:55951-55970 None:intergenic 40.0%
GTGGCCGTAATGAAAATATG+AGG - tig0020278:55954-55973 None:intergenic 40.0%
CGGTTACACCAAACAAGTAT+AGG - tig0020278:55992-56011 None:intergenic 40.0%
!! TTGTTTGGTGTAACCGGTAA+TGG + tig0020278:55996-56015 Msa1379270:CDS 40.0%
TTGTTTATGACAGTGCAGAC+TGG - tig0020278:56060-56079 None:intergenic 40.0%
!! TTCCCACTACTTTTCCTGAT+TGG + tig0020278:56264-56283 Msa1379270:three_prime_UTR 40.0%
!! TCCCACTACTTTTCCTGATT+GGG + tig0020278:56265-56284 Msa1379270:three_prime_UTR 40.0%
TCCCAATCAGGAAAAGTAGT+GGG - tig0020278:56269-56288 None:intergenic 40.0%
ATCCCAATCAGGAAAAGTAG+TGG - tig0020278:56270-56289 None:intergenic 40.0%
GATTCACAGAAATCCCAATC+AGG - tig0020278:56281-56300 None:intergenic 40.0%
AAGTTGAGGTCCAAAGGCTA+AGG - tig0020278:53453-53472 None:intergenic 45.0%
ACATGGAAGTTGAGGTCCAA+AGG - tig0020278:53459-53478 None:intergenic 45.0%
TGTGCATGCTTCAGTCTCAA+AGG + tig0020278:53686-53705 Msa1379270:CDS 45.0%
! GGTGAACAGAAGAGCAGTTT+TGG + tig0020278:53755-53774 Msa1379270:CDS 45.0%
!!! AGAAGAGCAGTTTTGGCTTC+TGG + tig0020278:53762-53781 Msa1379270:CDS 45.0%
!! GCTTCTGGAGTTTCCTTGTT+GGG + tig0020278:53777-53796 Msa1379270:CDS 45.0%
! GTTTCCTTGTTGGGTTTTCC+AGG + tig0020278:53786-53805 Msa1379270:CDS 45.0%
GAAGGATCGGTAAGAATGAG+AGG + tig0020278:54146-54165 Msa1379270:intron 45.0%
! CAGAACGGGGTCTTATATAC+AGG + tig0020278:54485-54504 Msa1379270:intron 45.0%
! GACCCCTTTTCATTTTGTGG+TGG - tig0020278:54750-54769 None:intergenic 45.0%
TCTGGTGCAACGAATGCTTA+AGG - tig0020278:54913-54932 None:intergenic 45.0%
GAAACTTCAAATGGAGGCCA+TGG + tig0020278:55057-55076 Msa1379270:intron 45.0%
!! TTTTTGACCAGACAGGTTGG+AGG + tig0020278:55218-55237 Msa1379270:intron 45.0%
TGTCCTCCTGATTTCTCATC+TGG - tig0020278:55256-55275 None:intergenic 45.0%
GATGAGAAATCAGGAGGACA+TGG + tig0020278:55256-55275 Msa1379270:CDS 45.0%
AAATCAGGAGGACATGGTGT+TGG + tig0020278:55262-55281 Msa1379270:CDS 45.0%
ATCACCTCTTCCCATTCTTG+AGG - tig0020278:55322-55341 None:intergenic 45.0%
AATCTCTCGGCTAAAAAGGG+AGG - tig0020278:55444-55463 None:intergenic 45.0%
CCATCGGAGAATCTAAGAAC+AGG - tig0020278:55677-55696 None:intergenic 45.0%
CCTGTTCTTAGATTCTCCGA+TGG + tig0020278:55674-55693 Msa1379270:CDS 45.0%
TGGAGAAAATGTGGAAGGGA+AGG + tig0020278:55866-55885 Msa1379270:CDS 45.0%
TCTTAATTGCAGGCCTTCAG+TGG + tig0020278:56116-56135 Msa1379270:intron 45.0%
TGTAGTGTCTCTTCCACTGA+AGG - tig0020278:56132-56151 None:intergenic 45.0%
ATTGTTATGCTTAGGCAGGG+TGG + tig0020278:56358-56377 Msa1379270:three_prime_UTR 45.0%
GCATCTAGTGAGTACTTAGC+AGG - tig0020278:56435-56454 None:intergenic 45.0%
!! TTATTAAGAAAAATATAATT+TGG - tig0020278:53542-53561 None:intergenic 5.0%
!! TAAAATATATTTAGTTAATA+GGG + tig0020278:54098-54117 Msa1379270:intron 5.0%
!! GGCTTCTGGAGTTTCCTTGT+TGG + tig0020278:53776-53795 Msa1379270:CDS 50.0%
CACTCCTGGAAAACCCAACA+AGG - tig0020278:53793-53812 None:intergenic 50.0%
! GGGTTTTCCAGGAGTGAGTT+TGG + tig0020278:53797-53816 Msa1379270:CDS 50.0%
CTTCTAGCAGGGAGAATTCC+TGG + tig0020278:53837-53856 Msa1379270:CDS 50.0%
CTGTCTGAGCCAGATGAACA+AGG + tig0020278:53861-53880 Msa1379270:CDS 50.0%
GAGAGTTGGCATAGAAGGCT+TGG - tig0020278:54837-54856 None:intergenic 50.0%
CAAGGTGACAGGAACAGTTC+TGG - tig0020278:54931-54950 None:intergenic 50.0%
GATATGTCCTCCAACCTGTC+TGG - tig0020278:55228-55247 None:intergenic 50.0%
AGGCCAGATGAGAAATCAGG+AGG + tig0020278:55250-55269 Msa1379270:CDS 50.0%
AGTGCCTCAAGAATGGGAAG+AGG + tig0020278:55315-55334 Msa1379270:CDS 50.0%
! GCACTGATCACTTTGTCTGG+AGG - tig0020278:55828-55847 None:intergenic 50.0%
GGCAACCGCCTATACTTGTT+TGG + tig0020278:55981-56000 Msa1379270:CDS 50.0%
TCCAGGAGTGAGTTTGGCTG+TGG + tig0020278:53803-53822 Msa1379270:CDS 55.0%
ACCACAGCCAAACTCACTCC+TGG - tig0020278:53807-53826 None:intergenic 55.0%
! TCATCTGGCTCAGACAGACC+AGG - tig0020278:53858-53877 None:intergenic 55.0%
! GGTTACCTAACAGGGTGCCT+TGG + tig0020278:53996-54015 Msa1379270:intron 55.0%
! CAATGCCAAGGCACCCTGTT+AGG - tig0020278:54004-54023 None:intergenic 55.0%
! CAGGTTGGAGGACATATCGC+AGG + tig0020278:55230-55249 Msa1379270:intron 55.0%
CGCAGGCCAGATGAGAAATC+AGG + tig0020278:55247-55266 Msa1379270:CDS 55.0%
! CAGGAGGACATGGTGTTGGA+TGG + tig0020278:55266-55285 Msa1379270:CDS 55.0%
CTCTCGGCTAAAAAGGGAGG+AGG - tig0020278:55441-55460 None:intergenic 55.0%
CAGACGTCCTTCCTTAGAGC+TGG - tig0020278:55639-55658 None:intergenic 55.0%
TTCATTACGGCCACCGCTGC+TGG + tig0020278:55960-55979 Msa1379270:CDS 60.0%
GTATAGGCGGTTGCCAGCAG+CGG - tig0020278:55976-55995 None:intergenic 60.0%
TAGGCGGTTGCCAGCAGCGG+TGG - tig0020278:55973-55992 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020278 gene 53429 56464 53429 ID=Msa1379270;Name=Msa1379270
tig0020278 mRNA 53429 56464 53429 ID=Msa1379270-mRNA-1;Parent=Msa1379270;Name=Msa1379270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=156|1|1|1|1|1|5|272|268
tig0020278 exon 53429 53882 53429 ID=Msa1379270-mRNA-1:exon:6484;Parent=Msa1379270-mRNA-1
tig0020278 exon 55233 55336 55233 ID=Msa1379270-mRNA-1:exon:6485;Parent=Msa1379270-mRNA-1
tig0020278 exon 55584 55695 55584 ID=Msa1379270-mRNA-1:exon:6486;Parent=Msa1379270-mRNA-1
tig0020278 exon 55790 56017 55790 ID=Msa1379270-mRNA-1:exon:6487;Parent=Msa1379270-mRNA-1
tig0020278 exon 56128 56464 56128 ID=Msa1379270-mRNA-1:exon:6488;Parent=Msa1379270-mRNA-1
tig0020278 five_prime_UTR 53429 53584 53429 ID=Msa1379270-mRNA-1:five_prime_utr;Parent=Msa1379270-mRNA-1
tig0020278 CDS 53585 53882 53585 ID=Msa1379270-mRNA-1:cds;Parent=Msa1379270-mRNA-1
tig0020278 CDS 55233 55336 55233 ID=Msa1379270-mRNA-1:cds;Parent=Msa1379270-mRNA-1
tig0020278 CDS 55584 55695 55584 ID=Msa1379270-mRNA-1:cds;Parent=Msa1379270-mRNA-1
tig0020278 CDS 55790 56017 55790 ID=Msa1379270-mRNA-1:cds;Parent=Msa1379270-mRNA-1
tig0020278 CDS 56128 56192 56128 ID=Msa1379270-mRNA-1:cds;Parent=Msa1379270-mRNA-1
tig0020278 three_prime_UTR 56193 56464 56193 ID=Msa1379270-mRNA-1:three_prime_utr;Parent=Msa1379270-mRNA-1
Gene Sequence

>Msa1379270

ATGGCAACATCCTTGTCCACAACAACTCTACTTTCCTATAGAAGAAACCCACAACACATGTATATCCAACCCTGTTCAGTTAAAAATGAAGTTTCAAGAACTGTGCATGCTTCAGTCTCAAAGGACAGTTTATCAATCAATGAAGAGAGTGATAAATGTTCATCTTTGTTGGTGAACAGAAGAGCAGTTTTGGCTTCTGGAGTTTCCTTGTTGGGTTTTCCAGGAGTGAGTTTGGCTGTGGTTAAACAAGGTCTTCTAGCAGGGAGAATTCCTGGTCTGTCTGAGCCAGATGAACAAGGTTGGAGGACATATCGCAGGCCAGATGAGAAATCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACACCTTTAAAGTGCCTCAAGAATGGGAAGAGGTACCTGTATCAATAGCAGATCTTGGTGGAACAGAGTTAGATTTGAGATTTTCCAGCTCTAAGGAAGGACGTCTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGTTATTGGTGATGATGCTACAATAGAAAAAATTGGACCTCCAGACAAAGTGATCAGTGCATTTGGTCCTGAAATGATTGGAGAAAATGTGGAAGGGAAGGTTCTTAGTTCAAATGTTGCAGAACATGAAGGGAGAACTTACTATCAGTTTGAGCTGGAGCCTCCTCATATTTTCATTACGGCCACCGCTGCTGGCAACCGCCTATACTTGTTTGGTGTAACCGGTAATGGCCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATATCCGACTCTTTTCGAGTTGTATAA

Protein sequence

>Msa1379270

MATSLSTTTLLSYRRNPQHMYIQPCSVKNEVSRTVHASVSKDSLSINEESDKCSSLLVNRRAVLASGVSLLGFPGVSLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPVSIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDVIGDDATIEKIGPPDKVISAFGPEMIGENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYNDLKKISDSFRVV*