AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471130 MtrunA17_Chr3g0125881 98.134 268 5 0 1 268 1 268 0.0 543
Msa0471130 MtrunA17_Chr6g0457731 91.379 58 5 0 162 219 1 58 8.52e-33 114
Msa0471130 MtrunA17_Chr7g0255661 31.707 164 91 6 121 267 100 259 1.10e-19 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471130 AT1G77090.1 77.232 224 46 2 49 268 38 260 2.52e-126 360
Msa0471130 AT3G56650.1 30.247 162 92 6 123 267 105 262 6.84e-18 81.3

Find 87 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCACTCTTGTTCTTTA+AGG 0.103321 3_3:+73343542 Msa0471130:five_prime_UTR
TCACGAGATGCTATTCTTTC+AGG 0.173071 3_3:+73346473 Msa0471130:three_prime_UTR
CCATTCTTGAGGCACTTTAA+AGG 0.210920 3_3:-73345337 None:intergenic
TTAAAGGTGTATGGAATAAT+AGG 0.298400 3_3:-73345321 None:intergenic
GGTGAACAGAAGAGCAGTTT+TGG 0.313029 3_3:+73343784 Msa0471130:CDS
GTGTTGTGGGTTTCTTCTAT+AGG 0.339103 3_3:-73343648 None:intergenic
GCTTCTGGAGTTTCCTTGTT+GGG 0.353626 3_3:+73343806 Msa0471130:CDS
TACTTCATAACCTTAGCCTT+TGG 0.356614 3_3:+73343469 Msa0471130:five_prime_UTR
GGCTTCTGGAGTTTCCTTGT+TGG 0.366718 3_3:+73343805 Msa0471130:CDS
TGTCCTCCTGATTTCTCATC+TGG 0.374249 3_3:-73345282 None:intergenic
CTATACTTGTTTGGTGTAAC+CGG 0.376509 3_3:+73346019 Msa0471130:CDS
CTTCTAGCAGGGAGAATTCC+TGG 0.384668 3_3:+73343866 Msa0471130:CDS
TGAGGCACTTTAAAGGTGTA+TGG 0.385118 3_3:-73345330 None:intergenic
TTCATTACGGCCACCGCTGC+TGG 0.392527 3_3:+73345989 Msa0471130:CDS
TTGTTTGGTGTAACCGGTAA+TGG 0.408086 3_3:+73346025 Msa0471130:CDS
TTACATTGTTATGCTTAGGC+AGG 0.414782 3_3:+73346383 Msa0471130:three_prime_UTR
GGCAACCGCCTATACTTGTT+TGG 0.416295 3_3:+73346010 Msa0471130:CDS
ACAATGTAACAAAACTGTTA+TGG 0.423744 3_3:-73346369 None:intergenic
GACAAAGTGATCAGTGCATT+TGG 0.425180 3_3:+73345860 Msa0471130:CDS
GTTAACGAACCTTGTTCATC+TGG 0.425267 3_3:-73343899 None:intergenic
ATGAGTAAACATACCATTAC+CGG 0.428524 3_3:-73346038 None:intergenic
AATGCACTGATCACTTTGTC+TGG 0.429585 3_3:-73345857 None:intergenic
CGCAGGCCAGATGAGAAATC+AGG 0.439964 3_3:+73345276 Msa0471130:CDS
GTTATGAAGTTGATCACTCT+TGG 0.444783 3_3:+73346424 Msa0471130:three_prime_UTR
TGATAAATGTTCATCTTTGT+TGG 0.447757 3_3:+73343763 Msa0471130:CDS
CGGTTACACCAAACAAGTAT+AGG 0.450219 3_3:-73346018 None:intergenic
TGCACTCTTGTTCTTTAAGG+TGG 0.451949 3_3:+73343545 Msa0471130:five_prime_UTR
CCTTTAAAGTGCCTCAAGAA+TGG 0.454989 3_3:+73345337 Msa0471130:CDS
GTTGGATATACATGTGTTGT+GGG 0.458582 3_3:-73343661 None:intergenic
CCAAGATCTGCTATTGATAC+AGG 0.460727 3_3:-73345616 None:intergenic
TCCAGGAGTGAGTTTGGCTG+TGG 0.472811 3_3:+73343832 Msa0471130:CDS
CTTTAAAGTGCCTCAAGAAT+GGG 0.477276 3_3:+73345338 Msa0471130:CDS
GCATTTGGTCCTGAAATGAT+TGG 0.486722 3_3:+73345875 Msa0471130:CDS
ACCACAGCCAAACTCACTCC+TGG 0.493815 3_3:-73343833 None:intergenic
GTTAAACAAGGTCTTCTAGC+AGG 0.494158 3_3:+73343854 Msa0471130:CDS
GATTCACAGAAATCCCAATC+AGG 0.494640 3_3:-73346307 None:intergenic
TATGAAGTAAAAGATATTTG+TGG 0.500616 3_3:-73343455 None:intergenic
CCTGTATCAATAGCAGATCT+TGG 0.502162 3_3:+73345616 Msa0471130:CDS
CCATCGGAGAATCTAAGAAC+AGG 0.502404 3_3:-73345703 None:intergenic
AACTTACTATCAGTTTGAGC+TGG 0.504221 3_3:+73345952 Msa0471130:CDS
AAGCACATCATCAATCTTCG+TGG 0.509428 3_3:+73343589 Msa0471130:five_prime_UTR
ATCATCAATCTTCGTGGACA+TGG 0.513825 3_3:+73343595 Msa0471130:exon
AAGTAGAGTTGTTGTGGACA+AGG 0.522596 3_3:-73343624 None:intergenic
TGTAGTGTCTCTTCCACTGA+AGG 0.524498 3_3:-73346158 None:intergenic
CAGGAGGACATGGTGTTGGA+TGG 0.529020 3_3:+73345295 Msa0471130:CDS
GCATCTCGTGAGTACTTAGC+AGG 0.533314 3_3:-73346461 None:intergenic
ATAGGAAAGTAGAGTTGTTG+TGG 0.538638 3_3:-73343630 None:intergenic
TAGGCGGTTGCCAGCAGCGG+TGG 0.539049 3_3:-73345999 None:intergenic
CAGACGTCCTTCCTTAGAGC+TGG 0.541704 3_3:-73345665 None:intergenic
TCAAATGTTGCAGAACATGA+AGG 0.543778 3_3:+73345926 Msa0471130:CDS
TGGAGAAAATGTGGAAGGGA+AGG 0.549881 3_3:+73345895 Msa0471130:CDS
TACATTGTTATGCTTAGGCA+GGG 0.550256 3_3:+73346384 Msa0471130:three_prime_UTR
TCTTAATTGCAGGCCTTCAG+TGG 0.551749 3_3:+73346145 Msa0471130:intron
AAACTGTTATGGTATATTGA+AGG 0.553878 3_3:-73346358 None:intergenic
GGTTGGATATACATGTGTTG+TGG 0.559670 3_3:-73343662 None:intergenic
TTTGTTACATTGTTATGCTT+AGG 0.563767 3_3:+73346379 Msa0471130:three_prime_UTR
TGAAATGATTGGAGAAAATG+TGG 0.574438 3_3:+73345886 Msa0471130:CDS
ACATGGAAGTTGAGGTCCAA+AGG 0.575208 3_3:-73343485 None:intergenic
GTGGCCGTAATGAAAATATG+AGG 0.575485 3_3:-73345980 None:intergenic
AAATCAGGAGGACATGGTGT+TGG 0.577495 3_3:+73345291 Msa0471130:CDS
ATCACCTCTTCCCATTCTTG+AGG 0.579716 3_3:-73345348 None:intergenic
CACTCCTGGAAAACCCAACA+AGG 0.583287 3_3:-73343819 None:intergenic
AAATATTAACATGGAAGTTG+AGG 0.583993 3_3:-73343493 None:intergenic
CAGGTTGGAGGACATATCGC+AGG 0.585205 3_3:+73345259 Msa0471130:intron
GTATCAATAGCAGATCTTGG+TGG 0.585808 3_3:+73345619 Msa0471130:CDS
TGTGCATGCTTCAGTCTCAA+AGG 0.591583 3_3:+73343715 Msa0471130:CDS
TCCCAATCAGGAAAAGTAGT+GGG 0.596078 3_3:-73346295 None:intergenic
CTGTCTGAGCCAGATGAACA+AGG 0.596600 3_3:+73343890 Msa0471130:CDS
ATCCCAATCAGGAAAAGTAG+TGG 0.597996 3_3:-73346296 None:intergenic
GTATAGGCGGTTGCCAGCAG+CGG 0.599408 3_3:-73346002 None:intergenic
CAAATGTTGCAGAACATGAA+GGG 0.602320 3_3:+73345927 Msa0471130:CDS
AAGTTGAGGTCCAAAGGCTA+AGG 0.605211 3_3:-73343479 None:intergenic
GATGAGAAATCAGGAGGACA+TGG 0.611956 3_3:+73345285 Msa0471130:CDS
AGTTTGGCTGTGGTTAAACA+AGG 0.615204 3_3:+73343842 Msa0471130:CDS
CCTGTTCTTAGATTCTCCGA+TGG 0.616850 3_3:+73345703 Msa0471130:CDS
TCATCTGGCTCAGACAGACC+AGG 0.619141 3_3:-73343884 None:intergenic
TTATACAACTCGAAAAGAGT+CGG 0.622471 3_3:-73346199 None:intergenic
ATGATTGGAGAAAATGTGGA+AGG 0.623515 3_3:+73345890 Msa0471130:CDS
AGTGCCTCAAGAATGGGAAG+AGG 0.627362 3_3:+73345344 Msa0471130:CDS
TTAAACAAGGTCTTCTAGCA+GGG 0.627829 3_3:+73343855 Msa0471130:CDS
ATTGTTATGCTTAGGCAGGG+TGG 0.627880 3_3:+73346387 Msa0471130:three_prime_UTR
AAGTAGTGGAAATATTAACA+TGG 0.631287 3_3:-73343502 None:intergenic
GCACTGATCACTTTGTCTGG+AGG 0.652054 3_3:-73345854 None:intergenic
TGATTGGAGAAAATGTGGAA+GGG 0.655080 3_3:+73345891 Msa0471130:CDS
GCCGTAATGAAAATATGAGG+AGG 0.673890 3_3:-73345977 None:intergenic
AGGCCAGATGAGAAATCAGG+AGG 0.693963 3_3:+73345279 Msa0471130:CDS
TTACACCAAACAAGTATAGG+CGG 0.725370 3_3:-73346015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATATATTTAGTTAAT+AGG + chr3_3:73344126-73344145 Msa0471130:intron 10.0%
!! AAAACATATATATAATTAAG+TGG + chr3_3:73344685-73344704 Msa0471130:intron 10.0%
!! AAACATATATATAATTAAGT+GGG + chr3_3:73344686-73344705 Msa0471130:intron 10.0%
!! ATAATATTCATAAAAAGTAG+TGG - chr3_3:73343519-73343538 None:intergenic 15.0%
!!! TTTTCCCTATATATTAAATT+CGG + chr3_3:73343943-73343962 Msa0471130:intron 15.0%
!!! TCAAATTTTGAAATCATAAT+GGG + chr3_3:73344004-73344023 Msa0471130:intron 15.0%
!!! AAGAAGTGTAATAAAAAAAT+TGG + chr3_3:73344070-73344089 Msa0471130:intron 15.0%
!!! AGAAGTGTAATAAAAAAATT+GGG + chr3_3:73344071-73344090 Msa0471130:intron 15.0%
!! TAATAAAAAAATTGGGAATT+TGG + chr3_3:73344078-73344097 Msa0471130:intron 15.0%
!! AATAAAAAAATTGGGAATTT+GGG + chr3_3:73344079-73344098 Msa0471130:intron 15.0%
!!! TCTATTTTATGATGTTTTTT+GGG - chr3_3:73344558-73344577 None:intergenic 15.0%
!!! ATCTATTTTATGATGTTTTT+TGG - chr3_3:73344559-73344578 None:intergenic 15.0%
!!! TATTATGCATAAATATCTTT+TGG + chr3_3:73344639-73344658 Msa0471130:intron 15.0%
!! AACATATATATAATTAAGTG+GGG + chr3_3:73344687-73344706 Msa0471130:intron 15.0%
!! ATAAATAAAATCATTTGCAA+CGG - chr3_3:73345022-73345041 None:intergenic 15.0%
!!! ATTTCATATTTTCAATTCAT+TGG - chr3_3:73346234-73346253 None:intergenic 15.0%
!!! GTCAAATTTTGAAATCATAA+TGG + chr3_3:73344003-73344022 Msa0471130:intron 20.0%
!! AAATTGCTCATATATAGTTA+TGG - chr3_3:73344494-73344513 None:intergenic 20.0%
!!! AAATATCTTTTGGCATTTAT+TGG + chr3_3:73344649-73344668 Msa0471130:intron 20.0%
!! ACATATATATAATTAAGTGG+GGG + chr3_3:73344688-73344707 Msa0471130:intron 20.0%
!! TTATTTGACAATATTTCAAG+AGG + chr3_3:73344813-73344832 Msa0471130:intron 20.0%
!! AGAAAGTTAAAATGAACAAA+AGG - chr3_3:73345745-73345764 None:intergenic 20.0%
!!! TTTTGTTCATTTTAACTTTC+TGG + chr3_3:73345744-73345763 Msa0471130:intron 20.0%
!! AATCTTTAATATGCAGTTAT+TGG + chr3_3:73345803-73345822 Msa0471130:intron 20.0%
!! TAGAAAATAATCTTAATTGC+AGG + chr3_3:73346135-73346154 Msa0471130:intron 20.0%
! AAATATTAACATGGAAGTTG+AGG - chr3_3:73343496-73343515 None:intergenic 25.0%
!! AAGTAGTGGAAATATTAACA+TGG - chr3_3:73343505-73343524 None:intergenic 25.0%
!!! ACTTCATTTTTAACTGAACA+GGG - chr3_3:73343686-73343705 None:intergenic 25.0%
!!! AACTTCATTTTTAACTGAAC+AGG - chr3_3:73343687-73343706 None:intergenic 25.0%
! TGATAAATGTTCATCTTTGT+TGG + chr3_3:73343763-73343782 Msa0471130:CDS 25.0%
! TGAACCATATGTGTAATAAT+CGG - chr3_3:73343979-73343998 None:intergenic 25.0%
! ATTATTACACATATGGTTCA+AGG + chr3_3:73343979-73343998 Msa0471130:intron 25.0%
! TTATTACACATATGGTTCAA+GGG + chr3_3:73343980-73343999 Msa0471130:intron 25.0%
!!! CAAAACTTTTAGAAAACAAG+TGG - chr3_3:73344107-73344126 None:intergenic 25.0%
!!! AAACTTAGGGATATTTTTGA+AGG + chr3_3:73344157-73344176 Msa0471130:intron 25.0%
!! TAATGCACTATCTAAAACTT+GGG + chr3_3:73344243-73344262 Msa0471130:intron 25.0%
! ACCAGTAATTATAAGTTGTA+GGG - chr3_3:73344319-73344338 None:intergenic 25.0%
! TACCAGTAATTATAAGTTGT+AGG - chr3_3:73344320-73344339 None:intergenic 25.0%
! ACTGGTATAAGTTAGTAAAT+CGG + chr3_3:73344333-73344352 Msa0471130:intron 25.0%
!! ACATAATACTGTTGTAGTTT+TGG + chr3_3:73344393-73344412 Msa0471130:intron 25.0%
! ATATATGAGCAATTTCAGAA+CGG + chr3_3:73344499-73344518 Msa0471130:intron 25.0%
! CATCATAAAATAGATATGCA+CGG + chr3_3:73344564-73344583 Msa0471130:intron 25.0%
! ATCATAAAATAGATATGCAC+GGG + chr3_3:73344565-73344584 Msa0471130:intron 25.0%
! AGGAAAAGGATTAAATGAAA+TGG - chr3_3:73344922-73344941 None:intergenic 25.0%
!!! TGCAAATCATTGTTTTGTTA+AGG - chr3_3:73344984-73345003 None:intergenic 25.0%
!! TTTGAAGTTTCAATTTCTTG+TGG - chr3_3:73345077-73345096 None:intergenic 25.0%
! CAAGAAATTGAAACTTCAAA+TGG + chr3_3:73345077-73345096 Msa0471130:intron 25.0%
! ATTAACATCAAGTCTACAAA+TGG - chr3_3:73345134-73345153 None:intergenic 25.0%
! CATTAAAAAAATTAGCAAGC+TGG - chr3_3:73345195-73345214 None:intergenic 25.0%
!!! CAGCTTGCTAATTTTTTTAA+TGG + chr3_3:73345193-73345212 Msa0471130:intron 25.0%
!! TTAAAGGTGTATGGAATAAT+AGG - chr3_3:73345324-73345343 None:intergenic 25.0%
! TAAAAGAGAATGAAATCTCT+CGG - chr3_3:73345486-73345505 None:intergenic 25.0%
! AAAATGAACAAAAGGAAATC+AGG - chr3_3:73345737-73345756 None:intergenic 25.0%
! GATGCTACAATAGAAAAAAT+TGG + chr3_3:73345830-73345849 Msa0471130:CDS 25.0%
! AAACTGTTATGGTATATTGA+AGG - chr3_3:73346361-73346380 None:intergenic 25.0%
! ACAATGTAACAAAACTGTTA+TGG - chr3_3:73346372-73346391 None:intergenic 25.0%
! TTTGTTACATTGTTATGCTT+AGG + chr3_3:73346379-73346398 Msa0471130:three_prime_UTR 25.0%
GTGGCCGAATTTAATATATA+GGG - chr3_3:73343950-73343969 None:intergenic 30.0%
AGTGGCCGAATTTAATATAT+AGG - chr3_3:73343951-73343970 None:intergenic 30.0%
TTTCCCGATTATTACACATA+TGG + chr3_3:73343972-73343991 Msa0471130:intron 30.0%
GAACCATATGTGTAATAATC+GGG - chr3_3:73343978-73343997 None:intergenic 30.0%
TATTACACATATGGTTCAAG+GGG + chr3_3:73343981-73344000 Msa0471130:intron 30.0%
AATAGGGTTGTGATAAACTT+AGG + chr3_3:73344143-73344162 Msa0471130:intron 30.0%
ATAGGGTTGTGATAAACTTA+GGG + chr3_3:73344144-73344163 Msa0471130:intron 30.0%
!! TAGGGATATTTTTGAAGGAT+CGG + chr3_3:73344162-73344181 Msa0471130:intron 30.0%
! GAAGCGAAAATAAGTTGAAA+TGG + chr3_3:73344198-73344217 Msa0471130:intron 30.0%
!!! AGTTGAAATGGTTTTGAAAG+TGG + chr3_3:73344210-73344229 Msa0471130:intron 30.0%
!!! GTTGAAATGGTTTTGAAAGT+GGG + chr3_3:73344211-73344230 Msa0471130:intron 30.0%
! CTAATGCACTATCTAAAACT+TGG + chr3_3:73344242-73344261 Msa0471130:intron 30.0%
TCCCTACAACTTATAATTAC+TGG + chr3_3:73344315-73344334 Msa0471130:intron 30.0%
CTGGTATAAGTTAGTAAATC+GGG + chr3_3:73344334-73344353 Msa0471130:intron 30.0%
TATTATGTTGCAAACTTGCA+AGG - chr3_3:73344381-73344400 None:intergenic 30.0%
TAAACTTGTGCAATTGTAGA+TGG + chr3_3:73344433-73344452 Msa0471130:intron 30.0%
!!! AGATGGTTTTAAGACTTATC+TGG + chr3_3:73344450-73344469 Msa0471130:intron 30.0%
TATATGAGCAATTTCAGAAC+GGG + chr3_3:73344500-73344519 Msa0471130:intron 30.0%
TCATAAAATAGATATGCACG+GGG + chr3_3:73344566-73344585 Msa0471130:intron 30.0%
AATATTTCAAGAGGACTTCT+AGG + chr3_3:73344822-73344841 Msa0471130:intron 30.0%
ATTTATCAGACAAAGAGAGT+TGG - chr3_3:73344880-73344899 None:intergenic 30.0%
!! TCATTGTTTTGTTAAGGTCA+AGG - chr3_3:73344978-73344997 None:intergenic 30.0%
GAAATTGAAACTTCAAATGG+AGG + chr3_3:73345080-73345099 Msa0471130:intron 30.0%
! TCAACACATTTCTTTTACCA+TGG - chr3_3:73345106-73345125 None:intergenic 30.0%
TGGTAAAAGAAATGTGTTGA+TGG + chr3_3:73345106-73345125 Msa0471130:intron 30.0%
! GAAGTATTTAGAACATAGAG+TGG + chr3_3:73345413-73345432 Msa0471130:intron 30.0%
AACATAGAGTGGACATTATT+TGG + chr3_3:73345424-73345443 Msa0471130:intron 30.0%
ACATAGAGTGGACATTATTT+GGG + chr3_3:73345425-73345444 Msa0471130:intron 30.0%
TTTACTCACATTTGATCATC+TGG + chr3_3:73345517-73345536 Msa0471130:intron 30.0%
TAAGCATACATTTGCTTAAC+AGG + chr3_3:73345591-73345610 Msa0471130:intron 30.0%
!!! ATTTTAACTTTCTGGAGACA+AGG + chr3_3:73345752-73345771 Msa0471130:intron 30.0%
! ACATTTTCTCCAATCATTTC+AGG - chr3_3:73345887-73345906 None:intergenic 30.0%
TGAAATGATTGGAGAAAATG+TGG + chr3_3:73345886-73345905 Msa0471130:CDS 30.0%
ATGAGTAAACATACCATTAC+CGG - chr3_3:73346041-73346060 None:intergenic 30.0%
TTATACAACTCGAAAAGAGT+CGG - chr3_3:73346202-73346221 None:intergenic 30.0%
!!! CTCTTTTCGAGTTGTATAAT+TGG + chr3_3:73346203-73346222 Msa0471130:exon 30.0%
! TACTTCATAACCTTAGCCTT+TGG + chr3_3:73343469-73343488 Msa0471130:five_prime_UTR 35.0%
ATCTGCACTCTTGTTCTTTA+AGG + chr3_3:73343542-73343561 Msa0471130:five_prime_UTR 35.0%
ATAGGAAAGTAGAGTTGTTG+TGG - chr3_3:73343633-73343652 None:intergenic 35.0%
GTTGGATATACATGTGTTGT+GGG - chr3_3:73343664-73343683 None:intergenic 35.0%
!! CATTTTTAACTGAACAGGGT+TGG - chr3_3:73343682-73343701 None:intergenic 35.0%
TTAAACAAGGTCTTCTAGCA+GGG + chr3_3:73343855-73343874 Msa0471130:CDS 35.0%
GTGTAATAATCGGGAAAAAG+TGG - chr3_3:73343969-73343988 None:intergenic 35.0%
!! ATCATAATGGGTTACCTAAC+AGG + chr3_3:73344016-73344035 Msa0471130:intron 35.0%
!! TCATAATGGGTTACCTAACA+GGG + chr3_3:73344017-73344036 Msa0471130:intron 35.0%
GTTGCATTAATTCAATGCCA+AGG - chr3_3:73344045-73344064 None:intergenic 35.0%
ATAGCCAACTTCTCAAATGA+AGG + chr3_3:73344273-73344292 Msa0471130:intron 35.0%
CTTACCTTCATTTGAGAAGT+TGG - chr3_3:73344280-73344299 None:intergenic 35.0%
AGTTAGTAAATCGGGTTTAG+AGG + chr3_3:73344342-73344361 Msa0471130:intron 35.0%
GTTAGTAAATCGGGTTTAGA+GGG + chr3_3:73344343-73344362 Msa0471130:intron 35.0%
CTTATCTGGTGAGCTTAAAT+AGG + chr3_3:73344464-73344483 Msa0471130:intron 35.0%
ATATGAGCAATTTCAGAACG+GGG + chr3_3:73344501-73344520 Msa0471130:intron 35.0%
! TTTTGGCATTTATTGGTCAC+AGG + chr3_3:73344656-73344675 Msa0471130:intron 35.0%
ATTGTGCATTGTAGCTAAGT+GGG - chr3_3:73344742-73344761 None:intergenic 35.0%
ACTACCACCACAAAATGAAA+AGG + chr3_3:73344772-73344791 Msa0471130:intron 35.0%
CTACCACCACAAAATGAAAA+GGG + chr3_3:73344773-73344792 Msa0471130:intron 35.0%
TACCACCACAAAATGAAAAG+GGG + chr3_3:73344774-73344793 Msa0471130:intron 35.0%
! TAGTAAGTTTTTGACCAGAC+AGG + chr3_3:73345240-73345259 Msa0471130:intron 35.0%
!! CTTTAAAGTGCCTCAAGAAT+GGG + chr3_3:73345338-73345357 Msa0471130:CDS 35.0%
CTGTTAAGTTCAGTCTCAAA+TGG + chr3_3:73345386-73345405 Msa0471130:intron 35.0%
TGAAATCTCTCGGCTAAAAA+GGG - chr3_3:73345476-73345495 None:intergenic 35.0%
ATGAAATCTCTCGGCTAAAA+AGG - chr3_3:73345477-73345496 None:intergenic 35.0%
!! TTTGAGATTTTCCAGCTCTA+AGG + chr3_3:73345654-73345673 Msa0471130:CDS 35.0%
ATGATTGGAGAAAATGTGGA+AGG + chr3_3:73345890-73345909 Msa0471130:CDS 35.0%
TGATTGGAGAAAATGTGGAA+GGG + chr3_3:73345891-73345910 Msa0471130:CDS 35.0%
TCAAATGTTGCAGAACATGA+AGG + chr3_3:73345926-73345945 Msa0471130:CDS 35.0%
CAAATGTTGCAGAACATGAA+GGG + chr3_3:73345927-73345946 Msa0471130:CDS 35.0%
AACTTACTATCAGTTTGAGC+TGG + chr3_3:73345952-73345971 Msa0471130:CDS 35.0%
! GCCTCCTCATATTTTCATTA+CGG + chr3_3:73345976-73345995 Msa0471130:CDS 35.0%
TTACACCAAACAAGTATAGG+CGG - chr3_3:73346018-73346037 None:intergenic 35.0%
!! CTATACTTGTTTGGTGTAAC+CGG + chr3_3:73346019-73346038 Msa0471130:CDS 35.0%
TTACATTGTTATGCTTAGGC+AGG + chr3_3:73346383-73346402 Msa0471130:three_prime_UTR 35.0%
TACATTGTTATGCTTAGGCA+GGG + chr3_3:73346384-73346403 Msa0471130:three_prime_UTR 35.0%
! GTTATGAAGTTGATCACTCT+TGG + chr3_3:73346424-73346443 Msa0471130:three_prime_UTR 35.0%
! TGCACTCTTGTTCTTTAAGG+TGG + chr3_3:73343545-73343564 Msa0471130:five_prime_UTR 40.0%
AAGCACATCATCAATCTTCG+TGG + chr3_3:73343589-73343608 Msa0471130:five_prime_UTR 40.0%
ATCATCAATCTTCGTGGACA+TGG + chr3_3:73343595-73343614 Msa0471130:exon 40.0%
AAGTAGAGTTGTTGTGGACA+AGG - chr3_3:73343627-73343646 None:intergenic 40.0%
GTGTTGTGGGTTTCTTCTAT+AGG - chr3_3:73343651-73343670 None:intergenic 40.0%
GGTTGGATATACATGTGTTG+TGG - chr3_3:73343665-73343684 None:intergenic 40.0%
AGTTTGGCTGTGGTTAAACA+AGG + chr3_3:73343842-73343861 Msa0471130:CDS 40.0%
GTTAAACAAGGTCTTCTAGC+AGG + chr3_3:73343854-73343873 Msa0471130:CDS 40.0%
GTTAACGAACCTTGTTCATC+TGG - chr3_3:73343902-73343921 None:intergenic 40.0%
AAGGATCGGTAAGAATGAGA+GGG + chr3_3:73344176-73344195 Msa0471130:intron 40.0%
TTGTGCATTGTAGCTAAGTG+GGG - chr3_3:73344741-73344760 None:intergenic 40.0%
CATTGTGCATTGTAGCTAAG+TGG - chr3_3:73344743-73344762 None:intergenic 40.0%
! AGTGACCCCTTTTCATTTTG+TGG - chr3_3:73344782-73344801 None:intergenic 40.0%
CAAAATGAAAAGGGGTCACT+AGG + chr3_3:73344782-73344801 Msa0471130:intron 40.0%
ACAAAGAGAGTTGGCATAGA+AGG - chr3_3:73344871-73344890 None:intergenic 40.0%
GCAACGAATGCTTAAGGAAA+AGG - chr3_3:73344936-73344955 None:intergenic 40.0%
TTTGTTAAGGTCAAGGTGAC+AGG - chr3_3:73344971-73344990 None:intergenic 40.0%
! AAGTTTTTGACCAGACAGGT+TGG + chr3_3:73345244-73345263 Msa0471130:intron 40.0%
! TGAGGCACTTTAAAGGTGTA+TGG - chr3_3:73345333-73345352 None:intergenic 40.0%
! CCATTCTTGAGGCACTTTAA+AGG - chr3_3:73345340-73345359 None:intergenic 40.0%
!! CCTTTAAAGTGCCTCAAGAA+TGG + chr3_3:73345337-73345356 Msa0471130:CDS 40.0%
ACTCACATTTGATCATCTGG+AGG + chr3_3:73345520-73345539 Msa0471130:intron 40.0%
CCAAGATCTGCTATTGATAC+AGG - chr3_3:73345619-73345638 None:intergenic 40.0%
CCTGTATCAATAGCAGATCT+TGG + chr3_3:73345616-73345635 Msa0471130:CDS 40.0%
GTATCAATAGCAGATCTTGG+TGG + chr3_3:73345619-73345638 Msa0471130:CDS 40.0%
!!! AGATTTTCCAGCTCTAAGGA+AGG + chr3_3:73345658-73345677 Msa0471130:CDS 40.0%
AAATCAGGCTAACTCACCAT+CGG - chr3_3:73345722-73345741 None:intergenic 40.0%
! AATGCACTGATCACTTTGTC+TGG - chr3_3:73345860-73345879 None:intergenic 40.0%
GACAAAGTGATCAGTGCATT+TGG + chr3_3:73345860-73345879 Msa0471130:CDS 40.0%
GCATTTGGTCCTGAAATGAT+TGG + chr3_3:73345875-73345894 Msa0471130:CDS 40.0%
GCCGTAATGAAAATATGAGG+AGG - chr3_3:73345980-73345999 None:intergenic 40.0%
GTGGCCGTAATGAAAATATG+AGG - chr3_3:73345983-73346002 None:intergenic 40.0%
CGGTTACACCAAACAAGTAT+AGG - chr3_3:73346021-73346040 None:intergenic 40.0%
!! TTGTTTGGTGTAACCGGTAA+TGG + chr3_3:73346025-73346044 Msa0471130:CDS 40.0%
TTGTTTATGACAGTGCAGAC+TGG - chr3_3:73346089-73346108 None:intergenic 40.0%
!! TTCCCACTACTTTTCCTGAT+TGG + chr3_3:73346293-73346312 Msa0471130:three_prime_UTR 40.0%
!! TCCCACTACTTTTCCTGATT+GGG + chr3_3:73346294-73346313 Msa0471130:three_prime_UTR 40.0%
TCCCAATCAGGAAAAGTAGT+GGG - chr3_3:73346298-73346317 None:intergenic 40.0%
ATCCCAATCAGGAAAAGTAG+TGG - chr3_3:73346299-73346318 None:intergenic 40.0%
GATTCACAGAAATCCCAATC+AGG - chr3_3:73346310-73346329 None:intergenic 40.0%
AAGTTGAGGTCCAAAGGCTA+AGG - chr3_3:73343482-73343501 None:intergenic 45.0%
ACATGGAAGTTGAGGTCCAA+AGG - chr3_3:73343488-73343507 None:intergenic 45.0%
TGTGCATGCTTCAGTCTCAA+AGG + chr3_3:73343715-73343734 Msa0471130:CDS 45.0%
! GGTGAACAGAAGAGCAGTTT+TGG + chr3_3:73343784-73343803 Msa0471130:CDS 45.0%
!!! AGAAGAGCAGTTTTGGCTTC+TGG + chr3_3:73343791-73343810 Msa0471130:CDS 45.0%
!! GCTTCTGGAGTTTCCTTGTT+GGG + chr3_3:73343806-73343825 Msa0471130:CDS 45.0%
! GTTTCCTTGTTGGGTTTTCC+AGG + chr3_3:73343815-73343834 Msa0471130:CDS 45.0%
GAAGGATCGGTAAGAATGAG+AGG + chr3_3:73344175-73344194 Msa0471130:intron 45.0%
! CAGAACGGGGTCTTATATAC+AGG + chr3_3:73344514-73344533 Msa0471130:intron 45.0%
! GACCCCTTTTCATTTTGTGG+TGG - chr3_3:73344779-73344798 None:intergenic 45.0%
TCTGGTGCAACGAATGCTTA+AGG - chr3_3:73344942-73344961 None:intergenic 45.0%
GAAACTTCAAATGGAGGCCA+TGG + chr3_3:73345086-73345105 Msa0471130:intron 45.0%
!! TTTTTGACCAGACAGGTTGG+AGG + chr3_3:73345247-73345266 Msa0471130:intron 45.0%
TGTCCTCCTGATTTCTCATC+TGG - chr3_3:73345285-73345304 None:intergenic 45.0%
GATGAGAAATCAGGAGGACA+TGG + chr3_3:73345285-73345304 Msa0471130:CDS 45.0%
AAATCAGGAGGACATGGTGT+TGG + chr3_3:73345291-73345310 Msa0471130:CDS 45.0%
ATCACCTCTTCCCATTCTTG+AGG - chr3_3:73345351-73345370 None:intergenic 45.0%
AATCTCTCGGCTAAAAAGGG+AGG - chr3_3:73345473-73345492 None:intergenic 45.0%
CCATCGGAGAATCTAAGAAC+AGG - chr3_3:73345706-73345725 None:intergenic 45.0%
CCTGTTCTTAGATTCTCCGA+TGG + chr3_3:73345703-73345722 Msa0471130:CDS 45.0%
TGGAGAAAATGTGGAAGGGA+AGG + chr3_3:73345895-73345914 Msa0471130:CDS 45.0%
TCTTAATTGCAGGCCTTCAG+TGG + chr3_3:73346145-73346164 Msa0471130:intron 45.0%
TGTAGTGTCTCTTCCACTGA+AGG - chr3_3:73346161-73346180 None:intergenic 45.0%
ATTGTTATGCTTAGGCAGGG+TGG + chr3_3:73346387-73346406 Msa0471130:three_prime_UTR 45.0%
!! TTATTAAGAAAAATATAATT+TGG - chr3_3:73343571-73343590 None:intergenic 5.0%
!! TAAAATATATTTAGTTAATA+GGG + chr3_3:73344127-73344146 Msa0471130:intron 5.0%
!! GGCTTCTGGAGTTTCCTTGT+TGG + chr3_3:73343805-73343824 Msa0471130:CDS 50.0%
CACTCCTGGAAAACCCAACA+AGG - chr3_3:73343822-73343841 None:intergenic 50.0%
! GGGTTTTCCAGGAGTGAGTT+TGG + chr3_3:73343826-73343845 Msa0471130:CDS 50.0%
CTTCTAGCAGGGAGAATTCC+TGG + chr3_3:73343866-73343885 Msa0471130:CDS 50.0%
CTGTCTGAGCCAGATGAACA+AGG + chr3_3:73343890-73343909 Msa0471130:CDS 50.0%
GAGAGTTGGCATAGAAGGCT+TGG - chr3_3:73344866-73344885 None:intergenic 50.0%
CAAGGTGACAGGAACAGTTC+TGG - chr3_3:73344960-73344979 None:intergenic 50.0%
GATATGTCCTCCAACCTGTC+TGG - chr3_3:73345257-73345276 None:intergenic 50.0%
AGGCCAGATGAGAAATCAGG+AGG + chr3_3:73345279-73345298 Msa0471130:CDS 50.0%
AGTGCCTCAAGAATGGGAAG+AGG + chr3_3:73345344-73345363 Msa0471130:CDS 50.0%
! GCACTGATCACTTTGTCTGG+AGG - chr3_3:73345857-73345876 None:intergenic 50.0%
GGCAACCGCCTATACTTGTT+TGG + chr3_3:73346010-73346029 Msa0471130:CDS 50.0%
GCATCTCGTGAGTACTTAGC+AGG - chr3_3:73346464-73346483 None:intergenic 50.0%
TCCAGGAGTGAGTTTGGCTG+TGG + chr3_3:73343832-73343851 Msa0471130:CDS 55.0%
ACCACAGCCAAACTCACTCC+TGG - chr3_3:73343836-73343855 None:intergenic 55.0%
! TCATCTGGCTCAGACAGACC+AGG - chr3_3:73343887-73343906 None:intergenic 55.0%
! GGTTACCTAACAGGGTGCCT+TGG + chr3_3:73344025-73344044 Msa0471130:intron 55.0%
! CAATGCCAAGGCACCCTGTT+AGG - chr3_3:73344033-73344052 None:intergenic 55.0%
! CAGGTTGGAGGACATATCGC+AGG + chr3_3:73345259-73345278 Msa0471130:intron 55.0%
CGCAGGCCAGATGAGAAATC+AGG + chr3_3:73345276-73345295 Msa0471130:CDS 55.0%
! CAGGAGGACATGGTGTTGGA+TGG + chr3_3:73345295-73345314 Msa0471130:CDS 55.0%
CTCTCGGCTAAAAAGGGAGG+AGG - chr3_3:73345470-73345489 None:intergenic 55.0%
CAGACGTCCTTCCTTAGAGC+TGG - chr3_3:73345668-73345687 None:intergenic 55.0%
TTCATTACGGCCACCGCTGC+TGG + chr3_3:73345989-73346008 Msa0471130:CDS 60.0%
GTATAGGCGGTTGCCAGCAG+CGG - chr3_3:73346005-73346024 None:intergenic 60.0%
TAGGCGGTTGCCAGCAGCGG+TGG - chr3_3:73346002-73346021 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73343458 73346493 73343458 ID=Msa0471130;Name=Msa0471130
chr3_3 mRNA 73343458 73346493 73343458 ID=Msa0471130-mRNA-1;Parent=Msa0471130;Name=Msa0471130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=156|1|1|1|1|1|5|272|268
chr3_3 exon 73343458 73343911 73343458 ID=Msa0471130-mRNA-1:exon:18544;Parent=Msa0471130-mRNA-1
chr3_3 exon 73345262 73345365 73345262 ID=Msa0471130-mRNA-1:exon:18545;Parent=Msa0471130-mRNA-1
chr3_3 exon 73345613 73345724 73345613 ID=Msa0471130-mRNA-1:exon:18546;Parent=Msa0471130-mRNA-1
chr3_3 exon 73345819 73346046 73345819 ID=Msa0471130-mRNA-1:exon:18547;Parent=Msa0471130-mRNA-1
chr3_3 exon 73346157 73346493 73346157 ID=Msa0471130-mRNA-1:exon:18548;Parent=Msa0471130-mRNA-1
chr3_3 five_prime_UTR 73343458 73343613 73343458 ID=Msa0471130-mRNA-1:five_prime_utr;Parent=Msa0471130-mRNA-1
chr3_3 CDS 73343614 73343911 73343614 ID=Msa0471130-mRNA-1:cds;Parent=Msa0471130-mRNA-1
chr3_3 CDS 73345262 73345365 73345262 ID=Msa0471130-mRNA-1:cds;Parent=Msa0471130-mRNA-1
chr3_3 CDS 73345613 73345724 73345613 ID=Msa0471130-mRNA-1:cds;Parent=Msa0471130-mRNA-1
chr3_3 CDS 73345819 73346046 73345819 ID=Msa0471130-mRNA-1:cds;Parent=Msa0471130-mRNA-1
chr3_3 CDS 73346157 73346221 73346157 ID=Msa0471130-mRNA-1:cds;Parent=Msa0471130-mRNA-1
chr3_3 three_prime_UTR 73346222 73346493 73346222 ID=Msa0471130-mRNA-1:three_prime_utr;Parent=Msa0471130-mRNA-1
Gene Sequence

>Msa0471130

ATGGCAACATCCTTGTCCACAACAACTCTACTTTCCTATAGAAGAAACCCACAACACATGTATATCCAACCCTGTTCAGTTAAAAATGAAGTTTCAAGAACTGTGCATGCTTCAGTCTCAAAGGACAGTTTATCAATCAATGAAGAGAGTGATAAATGTTCATCTTTGTTGGTGAACAGAAGAGCAGTTTTGGCTTCTGGAGTTTCCTTGTTGGGTTTTCCAGGAGTGAGTTTGGCTGTGGTTAAACAAGGTCTTCTAGCAGGGAGAATTCCTGGTCTGTCTGAGCCAGATGAACAAGGTTGGAGGACATATCGCAGGCCAGATGAGAAATCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACACCTTTAAAGTGCCTCAAGAATGGGAAGAGGTACCTGTATCAATAGCAGATCTTGGTGGAACAGAGTTAGATTTGAGATTTTCCAGCTCTAAGGAAGGACGTCTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCCGATGTTATTGGTGATGATGCTACAATAGAAAAAATTGGACCTCCAGACAAAGTGATCAGTGCATTTGGTCCTGAAATGATTGGAGAAAATGTGGAAGGGAAGGTTCTTAGTTCAAATGTTGCAGAACATGAAGGGAGAACTTACTATCAGTTTGAGCTGGAGCCTCCTCATATTTTCATTACGGCCACCGCTGCTGGCAACCGCCTATACTTGTTTGGTGTAACCGGTAATGGCCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATATCCGACTCTTTTCGAGTTGTATAA

Protein sequence

>Msa0471130

MATSLSTTTLLSYRRNPQHMYIQPCSVKNEVSRTVHASVSKDSLSINEESDKCSSLLVNRRAVLASGVSLLGFPGVSLAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPVSIADLGGTELDLRFSSSKEGRLFVIVAPVLRFSDVIGDDATIEKIGPPDKVISAFGPEMIGENVEGKVLSSNVAEHEGRTYYQFELEPPHIFITATAAGNRLYLFGVTGNGLQWKRHYNDLKKISDSFRVV*