AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 87 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTGTTCTTCTGCTTCT+AGG 0.158404 5_3:+53321443 Msa0817880:three_prime_UTR
CAATAAATCGGATTGCAAAT+TGG 0.179236 5_3:-53320406 None:intergenic
AAATCTTGTATTGCTAAAAT+TGG 0.182331 5_3:+53324593 Msa0817880:three_prime_UTR
CAAGCTTAACTCCAAGGTTT+TGG 0.213368 5_3:-53320908 None:intergenic
TGACAATCTGAATTTGTTAA+AGG 0.219792 5_3:+53320815 Msa0817880:exon
TCATCAGATAGAGGTGAAAT+TGG 0.254028 5_3:-53324509 None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG 0.263113 5_3:-53321756 None:intergenic
CTATCAACCCTCTTGTCATC+TGG 0.272101 5_3:+53321763 Msa0817880:three_prime_UTR
CATTTGTTATAGGATAAATT+TGG 0.280363 5_3:+53320123 Msa0817880:intron
AATAAATCGGATTGCAAATT+GGG 0.290251 5_3:-53320405 None:intergenic
ACCCTCTTGTCATCTGGGCT+TGG 0.316440 5_3:+53321769 Msa0817880:three_prime_UTR
CTTGTTACTGCACTTATTAT+CGG 0.320323 5_3:+53320855 Msa0817880:three_prime_UTR
CCCTCTTGTCATCTGGGCTT+GGG 0.332709 5_3:+53321770 Msa0817880:three_prime_UTR
TGGTGGCAGATAGGCTCTTT+TGG 0.338317 5_3:+53321332 Msa0817880:intron
TGGTTTGGTGCTGCGTCTTT+TGG 0.348500 5_3:+53320345 Msa0817880:CDS
ATGACAAGTATATTGCTCTT+AGG 0.349778 5_3:+53324546 Msa0817880:three_prime_UTR
TCTGGTTGTAAAGTAGTTCT+TGG 0.370039 5_3:-53320210 None:intergenic
GCAGCTGCTGGACCAATTGC+CGG 0.374813 5_3:+53321410 Msa0817880:three_prime_UTR
TTGTTAAAGGATGGCCTACC+TGG 0.381827 5_3:+53320828 Msa0817880:three_prime_UTR
TTGTTACTGCACTTATTATC+GGG 0.385893 5_3:+53320856 Msa0817880:three_prime_UTR
CCAATTGCCGGATTTGCATT+GGG 0.393078 5_3:+53321422 Msa0817880:three_prime_UTR
TATCAACCCTCTTGTCATCT+GGG 0.397366 5_3:+53321764 Msa0817880:three_prime_UTR
ATAAATTTGGAGATGAATAC+AGG 0.402996 5_3:+53320136 Msa0817880:CDS
CTTGTCATCTGGGCTTGGGC+AGG 0.406606 5_3:+53321774 Msa0817880:three_prime_UTR
TTGCTCAAGATTGCAGCTGC+TGG 0.406860 5_3:+53321398 Msa0817880:three_prime_UTR
TGATACCTTTCTTCCCCATA+TGG 0.407032 5_3:-53321862 None:intergenic
TCCAGCAGGAATACTGTTGA+TGG 0.409965 5_3:-53321811 None:intergenic
AACAAGACCCAATGCAAATC+CGG 0.416938 5_3:-53321429 None:intergenic
ACCAATTGCCGGATTTGCAT+TGG 0.418392 5_3:+53321421 Msa0817880:three_prime_UTR
TTAATGATGTAGCTTTCTAC+TGG 0.420976 5_3:+53324456 Msa0817880:three_prime_UTR
CAGGCTTCAATTCGCTTCAC+AGG 0.436252 5_3:+53324398 Msa0817880:intron
CCCAATGCAAATCCGGCAAT+TGG 0.439644 5_3:-53321422 None:intergenic
TCCCGTACTTTGTTCCTAGC+TGG 0.456423 5_3:+53320934 Msa0817880:three_prime_UTR
ATTCCTGCTGGAGAAATTGA+TGG 0.463251 5_3:+53321822 Msa0817880:three_prime_UTR
GTACTTTGTTCCTAGCTGGC+AGG 0.463565 5_3:+53320938 Msa0817880:three_prime_UTR
CACACACCTAGTAAGGATCT+TGG 0.464479 5_3:-53319862 None:intergenic
CTTGGAACGACAACGGCCAC+TGG 0.467933 5_3:-53320192 None:intergenic
CAAAACCTTGGAGTTAAGCT+TGG 0.474152 5_3:+53320909 Msa0817880:three_prime_UTR
TCATTTCTAGCCGGCGGCAT+TGG 0.474891 5_3:+53321527 Msa0817880:three_prime_UTR
TTAGCTGTACCTGAGTGGTT+TGG 0.476022 5_3:+53320330 Msa0817880:intron
CTAGGGTGGAGTGCTATTCA+AGG 0.477217 5_3:+53319959 Msa0817880:intron
AAGTACGTACGAGTTGTCTC+TGG 0.478656 5_3:-53320228 None:intergenic
TTTCTAGTTGCCCAAAACCT+TGG 0.479583 5_3:+53320897 Msa0817880:three_prime_UTR
TACTGTTGATGGCATTGATA+AGG 0.481843 5_3:-53321800 None:intergenic
AGATAGGCACACACCTAGTA+AGG 0.482436 5_3:-53319869 None:intergenic
GCCACTGGCTTATCATCCTC+AGG 0.483050 5_3:-53320177 None:intergenic
TCAGTTATTTCATCAGATAG+AGG 0.484865 5_3:-53324518 None:intergenic
TGCCAGCTAGGAACAAAGTA+CGG 0.492497 5_3:-53320936 None:intergenic
CTTATATTCTTCTTGCAAAG+AGG 0.500793 5_3:+53324485 Msa0817880:three_prime_UTR
GCCATCAACAGTATTCCTGC+TGG 0.507781 5_3:+53321810 Msa0817880:three_prime_UTR
CGATAATAAGTGCAGTAACA+AGG 0.511270 5_3:-53320854 None:intergenic
ATTATCGGGGTACATGAACT+TGG 0.511624 5_3:+53320870 Msa0817880:three_prime_UTR
AGAGCAATATACTTGTCATC+AGG 0.512530 5_3:-53324542 None:intergenic
CCTCCATCAATTTCTCCAGC+AGG 0.514006 5_3:-53321825 None:intergenic
CATCCTCAGGATTGACCAGA+AGG 0.524656 5_3:-53320164 None:intergenic
TTTCCTTCTGGTCAATCCTG+AGG 0.527445 5_3:+53320161 Msa0817880:CDS
CTTGGTAACGTTCTCAAGGA+AGG 0.529950 5_3:+53321729 Msa0817880:three_prime_UTR
AATCTGAATTTGTTAAAGGA+TGG 0.531461 5_3:+53320819 Msa0817880:exon
TATCATACAACCTGCCAGCT+AGG 0.533569 5_3:-53320948 None:intergenic
ATACCTCCAAGTGACGGTAT+TGG 0.534054 5_3:+53321473 Msa0817880:three_prime_UTR
AGTGCAGTAACAAGGGCTCC+AGG 0.541596 5_3:-53320846 None:intergenic
GGGGACATTGCGAAGCAGTA+AGG 0.546571 5_3:-53320385 None:intergenic
GTTTCTTGGTAACGTTCTCA+AGG 0.553899 5_3:+53321725 Msa0817880:three_prime_UTR
GCCAGCTAGGAACAAAGTAC+GGG 0.582312 5_3:-53320935 None:intergenic
ACACCAATACCGTCACTTGG+AGG 0.583153 5_3:-53321476 None:intergenic
CACGAGTCATTTCTAGCCGG+CGG 0.588757 5_3:+53321521 Msa0817880:three_prime_UTR
TGTTACTGCACTTATTATCG+GGG 0.591294 5_3:+53320857 Msa0817880:three_prime_UTR
AACAAGCCAAGATCCTTACT+AGG 0.591934 5_3:+53319856 Msa0817880:five_prime_UTR
ACAACACCAATACCGTCACT+TGG 0.597252 5_3:-53321479 None:intergenic
GATAATAAGTGCAGTAACAA+GGG 0.601874 5_3:-53320853 None:intergenic
GGACTCCAAGCTTAACTCCA+AGG 0.609370 5_3:-53320914 None:intergenic
ATATAGCTTACCAATGCCGC+CGG 0.611628 5_3:-53321537 None:intergenic
GCCCAAGCCCAGATGACAAG+AGG 0.612324 5_3:-53321771 None:intergenic
CTGCTGGAGAAATTGATGGA+GGG 0.614638 5_3:+53321826 Msa0817880:three_prime_UTR
TTTCACGAGTCATTTCTAGC+CGG 0.617627 5_3:+53321518 Msa0817880:three_prime_UTR
TAATGATGTAGCTTTCTACT+GGG 0.625802 5_3:+53324457 Msa0817880:three_prime_UTR
CAGTAACAAGGGCTCCAGGT+AGG 0.628013 5_3:-53320842 None:intergenic
CCTGCTGGAGAAATTGATGG+AGG 0.633583 5_3:+53321825 Msa0817880:three_prime_UTR
CCCAAGCCCAGATGACAAGA+GGG 0.633593 5_3:-53321770 None:intergenic
TAGGGTGGAGTGCTATTCAA+GGG 0.635501 5_3:+53319960 Msa0817880:intron
TTTGTTATACCTCCAAGTGA+CGG 0.635773 5_3:+53321467 Msa0817880:three_prime_UTR
GACGCAGCACCAAACCACTC+AGG 0.637018 5_3:-53320339 None:intergenic
TCCTGAGGATGATAAGCCAG+TGG 0.661607 5_3:+53320176 Msa0817880:CDS
ATAAATCGGATTGCAAATTG+GGG 0.665060 5_3:-53320404 None:intergenic
CTATTCAAGGGAAACCTGCG+AGG 0.669260 5_3:+53319972 Msa0817880:five_prime_UTR
AGTAGTTCTTGGAACGACAA+CGG 0.680756 5_3:-53320199 None:intergenic
TATTCAAGGGAAACCTGCGA+GGG 0.734245 5_3:+53319973 Msa0817880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTTTATATTTTATTGA+AGG - chr5_3:53321110-53321129 None:intergenic 10.0%
!! ATAAAATATAAACTATTCAA+AGG + chr5_3:53321113-53321132 Msa0817880:intron 10.0%
!!! TACAAATATATTGATCTTTT+AGG + chr5_3:53320603-53320622 Msa0817880:intron 15.0%
!! TTTACATGATATATATTAGA+TGG - chr5_3:53321075-53321094 None:intergenic 15.0%
!! TTCAAATTATCATTAAACTT+TGG - chr5_3:53321984-53322003 None:intergenic 15.0%
!! TGATAATAAAAAGTGAATAA+TGG - chr5_3:53322447-53322466 None:intergenic 15.0%
!!! AAATGAATATTTTATCTGTA+AGG - chr5_3:53323740-53323759 None:intergenic 15.0%
!! GTTTCTTAAATAATACTATT+AGG + chr5_3:53324190-53324209 Msa0817880:intron 15.0%
!! TAAGAAATGAAACAGAAATA+TGG - chr5_3:53320046-53320065 None:intergenic 20.0%
!! CAAATTTATCCTATAACAAA+TGG - chr5_3:53320125-53320144 None:intergenic 20.0%
!!! CATTTGTTATAGGATAAATT+TGG + chr5_3:53320123-53320142 Msa0817880:intron 20.0%
!!! TCTTTTTTATTTTCTACTCA+TGG + chr5_3:53320280-53320299 Msa0817880:intron 20.0%
!!! ATTCCTTCAAGTAAATTTTA+AGG + chr5_3:53320553-53320572 Msa0817880:intron 20.0%
!! TATCCTTAAAATTTACTTGA+AGG - chr5_3:53320559-53320578 None:intergenic 20.0%
!!! GAACATCAACAATAATATTT+TGG - chr5_3:53320783-53320802 None:intergenic 20.0%
!! AGATTCAAATTGACAAAATT+TGG + chr5_3:53321214-53321233 Msa0817880:intron 20.0%
!!! AGAAATTTTGATGCTTAATT+TGG + chr5_3:53321312-53321331 Msa0817880:intron 20.0%
!! TAATAAAAAGTGAATAATGG+TGG - chr5_3:53322444-53322463 None:intergenic 20.0%
!!! TTTTGTATTTTTGTGAATGT+TGG - chr5_3:53322478-53322497 None:intergenic 20.0%
!!! TATAGTTTATTGTTATTGCT+TGG + chr5_3:53322750-53322769 Msa0817880:intron 20.0%
!!! ATTTAAAAACTTTTTGTGGA+GGG - chr5_3:53324082-53324101 None:intergenic 20.0%
!!! CAAGATTTAAAAACTTTTTG+TGG - chr5_3:53324086-53324105 None:intergenic 20.0%
!!! CACAAAAAGTTTTTAAATCT+TGG + chr5_3:53324084-53324103 Msa0817880:intron 20.0%
!!! AAAAAGTTTTTAAATCTTGG+TGG + chr5_3:53324087-53324106 Msa0817880:intron 20.0%
!! TATTAGGATATTTAATTGAG+TGG + chr5_3:53324206-53324225 Msa0817880:intron 20.0%
!! AAATCTTGTATTGCTAAAAT+TGG + chr5_3:53324593-53324612 Msa0817880:three_prime_UTR 20.0%
! AAACTAAATAGAGGAAAGAT+AGG - chr5_3:53319888-53319907 None:intergenic 25.0%
!!! ATTTGCATACCATTTGTTAT+AGG + chr5_3:53320113-53320132 Msa0817880:intron 25.0%
! ATAAATTTGGAGATGAATAC+AGG + chr5_3:53320136-53320155 Msa0817880:CDS 25.0%
! AATAAATCGGATTGCAAATT+GGG - chr5_3:53320408-53320427 None:intergenic 25.0%
! GAAAAATGCTCACAATAAAT+CGG - chr5_3:53320421-53320440 None:intergenic 25.0%
! TTCATACTCTATTATCTCTT+AGG + chr5_3:53320460-53320479 Msa0817880:intron 25.0%
! TCATACTCTATTATCTCTTA+GGG + chr5_3:53320461-53320480 Msa0817880:intron 25.0%
! AATATATTTGTACCCAAACA+TGG - chr5_3:53320595-53320614 None:intergenic 25.0%
!! AGGCTTTATGTTTATTTAAC+AGG + chr5_3:53320623-53320642 Msa0817880:intron 25.0%
! GTATGATTTATTCCTATGAA+AGG - chr5_3:53320698-53320717 None:intergenic 25.0%
!! CATATCATATATGCATTTTG+AGG + chr5_3:53320752-53320771 Msa0817880:intron 25.0%
!!! TGACAATCTGAATTTGTTAA+AGG + chr5_3:53320815-53320834 Msa0817880:exon 25.0%
!!! AATCTGAATTTGTTAAAGGA+TGG + chr5_3:53320819-53320838 Msa0817880:exon 25.0%
! GATGCATATAATAAACACTA+GGG + chr5_3:53321135-53321154 Msa0817880:intron 25.0%
! AACCACCTAATTTAATGTTA+TGG + chr5_3:53321181-53321200 Msa0817880:intron 25.0%
! TTCCATAACATTAAATTAGG+TGG - chr5_3:53321186-53321205 None:intergenic 25.0%
! GCATTCCATAACATTAAATT+AGG - chr5_3:53321189-53321208 None:intergenic 25.0%
!!! AATTTTGATGCTTAATTTGG+TGG + chr5_3:53321315-53321334 Msa0817880:intron 25.0%
!!! TTATTTTGATCTTCACTCTT+AGG + chr5_3:53321898-53321917 Msa0817880:intron 25.0%
!!! AGTATCGATTTTATCTCAAA+TGG - chr5_3:53321941-53321960 None:intergenic 25.0%
! ATAAGAGTCAAAATACGAAT+CGG + chr5_3:53322115-53322134 Msa0817880:intron 25.0%
!!! TTTCAGTTTCTTTTTGAAGA+GGG - chr5_3:53322250-53322269 None:intergenic 25.0%
! CAAAATAATAGCTCCAAATT+TGG + chr5_3:53322581-53322600 Msa0817880:intron 25.0%
! GAATAATGTCATCTTTGAAT+CGG - chr5_3:53322655-53322674 None:intergenic 25.0%
!!! AGTTTGTAGGGTTTTAAATA+CGG + chr5_3:53323287-53323306 Msa0817880:intron 25.0%
!! TTTTCATCTCAGCATTAAAA+CGG - chr5_3:53323375-53323394 None:intergenic 25.0%
!!! AGATTTTAGAAGGGAAAAAA+TGG + chr5_3:53323658-53323677 Msa0817880:intron 25.0%
!!! GATTTTAGAAGGGAAAAAAT+GGG + chr5_3:53323659-53323678 Msa0817880:intron 25.0%
!! ATTCATTTTGTGTCAATATG+TGG + chr5_3:53323752-53323771 Msa0817880:intron 25.0%
!! TTAGTGACATTCATTAGTTT+GGG - chr5_3:53323881-53323900 None:intergenic 25.0%
!! TTGACTTTTAACAAGATTTG+TGG + chr5_3:53323905-53323924 Msa0817880:intron 25.0%
!!! AAGGTTTTAAATAACGGTAA+CGG - chr5_3:53324036-53324055 None:intergenic 25.0%
!!! CAAACCAAGGTTTTAAATAA+CGG - chr5_3:53324042-53324061 None:intergenic 25.0%
!! GATTTAAAAACTTTTTGTGG+AGG - chr5_3:53324083-53324102 None:intergenic 25.0%
! AATTGGACATTTACAGTTAT+GGG - chr5_3:53324129-53324148 None:intergenic 25.0%
! AAATGTATATTCATACATGC+AGG - chr5_3:53324251-53324270 None:intergenic 25.0%
! AAGGAAGACAATGATATAAA+TGG - chr5_3:53324336-53324355 None:intergenic 25.0%
! TTACACGTAAAAAGAAGTAA+AGG - chr5_3:53324355-53324374 None:intergenic 25.0%
! CTAACTTAAGTATATTTCAC+AGG + chr5_3:53324379-53324398 Msa0817880:intron 25.0%
GCATATGCAAAACTAAATAG+AGG - chr5_3:53319897-53319916 None:intergenic 30.0%
!!! TTAGTTTTGCATATGCTCAA+AGG + chr5_3:53319901-53319920 Msa0817880:intron 30.0%
! GTTCAGAAGTTATTTCAACA+TGG - chr5_3:53320088-53320107 None:intergenic 30.0%
ATAAATCGGATTGCAAATTG+GGG - chr5_3:53320407-53320426 None:intergenic 30.0%
CAATAAATCGGATTGCAAAT+TGG - chr5_3:53320409-53320428 None:intergenic 30.0%
CATACTCTATTATCTCTTAG+GGG + chr5_3:53320462-53320481 Msa0817880:intron 30.0%
TCCTAACAAATTCCATGTTT+GGG + chr5_3:53320580-53320599 Msa0817880:intron 30.0%
TGATTTATTCCTATGAAAGG+TGG - chr5_3:53320695-53320714 None:intergenic 30.0%
GATAATAAGTGCAGTAACAA+GGG - chr5_3:53320856-53320875 None:intergenic 30.0%
CTTGTTACTGCACTTATTAT+CGG + chr5_3:53320855-53320874 Msa0817880:three_prime_UTR 30.0%
TTGTTACTGCACTTATTATC+GGG + chr5_3:53320856-53320875 Msa0817880:three_prime_UTR 30.0%
GGATGCATATAATAAACACT+AGG + chr5_3:53321134-53321153 Msa0817880:intron 30.0%
CATATAATAAACACTAGGGA+TGG + chr5_3:53321139-53321158 Msa0817880:intron 30.0%
ATTAGGTGGTTTGAAAAAAC+AGG - chr5_3:53321172-53321191 None:intergenic 30.0%
!!! TGGTATTGGTCAATTTGTTT+TGG + chr5_3:53321252-53321271 Msa0817880:intron 30.0%
TTTAAGCTTGCATTCATTTG+TGG + chr5_3:53321592-53321611 Msa0817880:intron 30.0%
!! GTTTTAGCAAAACTGTTTCT+TGG + chr5_3:53321711-53321730 Msa0817880:intron 30.0%
! GAGAATTTCTTTTGCCATAT+GGG + chr5_3:53321848-53321867 Msa0817880:three_prime_UTR 30.0%
! AGAATTTCTTTTGCCATATG+GGG + chr5_3:53321849-53321868 Msa0817880:three_prime_UTR 30.0%
! AAAAGTGAAACATGATTTGC+CGG + chr5_3:53322049-53322068 Msa0817880:intron 30.0%
TTTCCATCCAAAAAAGAAAC+CGG - chr5_3:53322071-53322090 None:intergenic 30.0%
!! TTCAGTTTCTTTTTGAAGAG+GGG - chr5_3:53322249-53322268 None:intergenic 30.0%
!! CTTTCAGTTTCTTTTTGAAG+AGG - chr5_3:53322251-53322270 None:intergenic 30.0%
TTCTTGATAAGATCAATGCA+TGG - chr5_3:53322337-53322356 None:intergenic 30.0%
!! GAAGATGTTTAATTTGGTAG+AGG - chr5_3:53322380-53322399 None:intergenic 30.0%
ACCAAATTAAACATCTTCCT+TGG + chr5_3:53322382-53322401 Msa0817880:intron 30.0%
TCCAAGGAAGATGTTTAATT+TGG - chr5_3:53322386-53322405 None:intergenic 30.0%
ATTAAACATCTTCCTTGGAT+TGG + chr5_3:53322387-53322406 Msa0817880:intron 30.0%
TTAAACATCTTCCTTGGATT+GGG + chr5_3:53322388-53322407 Msa0817880:intron 30.0%
ATCTGATGAAGGACAAAAAA+AGG - chr5_3:53322513-53322532 None:intergenic 30.0%
TAATGTTGTGTATCTGATGA+AGG - chr5_3:53322524-53322543 None:intergenic 30.0%
CAAGTGAATGAAACCAAATT+TGG - chr5_3:53322597-53322616 None:intergenic 30.0%
! CTTTGAATCGGATTCTAAAA+TGG - chr5_3:53322643-53322662 None:intergenic 30.0%
! CAAGCTTTTGATGTTCATAA+AGG - chr5_3:53322729-53322748 None:intergenic 30.0%
CTTTATGAACATCAAAAGCT+TGG + chr5_3:53322727-53322746 Msa0817880:intron 30.0%
! CTATGGTTCTATATAGTCTA+TGG - chr5_3:53323038-53323057 None:intergenic 30.0%
TGGAATAACACTCATTAATC+TGG - chr5_3:53323061-53323080 None:intergenic 30.0%
GAAAAATGGTGGCTAAAATA+TGG - chr5_3:53323161-53323180 None:intergenic 30.0%
!!! TCACTCTTGTTTTAGTTTGT+AGG + chr5_3:53323274-53323293 Msa0817880:intron 30.0%
!!! CACTCTTGTTTTAGTTTGTA+GGG + chr5_3:53323275-53323294 Msa0817880:intron 30.0%
!!! GTTTGTAGGGTTTTAAATAC+GGG + chr5_3:53323288-53323307 Msa0817880:intron 30.0%
AGCATTAAAACGGCAAATAA+CGG - chr5_3:53323365-53323384 None:intergenic 30.0%
AGAGTGAAATTAGTTAGAGA+AGG - chr5_3:53323589-53323608 None:intergenic 30.0%
TTTCACTCTCACTCTTAATT+TGG + chr5_3:53323600-53323619 Msa0817880:intron 30.0%
TTCACTCTCACTCTTAATTT+GGG + chr5_3:53323601-53323620 Msa0817880:intron 30.0%
! AGATGAGATGAGATTTTAGA+AGG + chr5_3:53323648-53323667 Msa0817880:intron 30.0%
!! GATGAGATGAGATTTTAGAA+GGG + chr5_3:53323649-53323668 Msa0817880:intron 30.0%
GTTAGTGACATTCATTAGTT+TGG - chr5_3:53323882-53323901 None:intergenic 30.0%
! GTTACCGTTATTTAAAACCT+TGG + chr5_3:53324035-53324054 Msa0817880:intron 30.0%
CAATTGGACATTTACAGTTA+TGG - chr5_3:53324130-53324149 None:intergenic 30.0%
CATAACTGTAAATGTCCAAT+TGG + chr5_3:53324128-53324147 Msa0817880:intron 30.0%
TTAATGATGTAGCTTTCTAC+TGG + chr5_3:53324456-53324475 Msa0817880:three_prime_UTR 30.0%
TAATGATGTAGCTTTCTACT+GGG + chr5_3:53324457-53324476 Msa0817880:three_prime_UTR 30.0%
CTTATATTCTTCTTGCAAAG+AGG + chr5_3:53324485-53324504 Msa0817880:three_prime_UTR 30.0%
! TCAGTTATTTCATCAGATAG+AGG - chr5_3:53324521-53324540 None:intergenic 30.0%
ATGACAAGTATATTGCTCTT+AGG + chr5_3:53324546-53324565 Msa0817880:three_prime_UTR 30.0%
TCTGGTTGTAAAGTAGTTCT+TGG - chr5_3:53320213-53320232 None:intergenic 35.0%
ACTTAACTCCTTCGAAATTG+TGG + chr5_3:53320247-53320266 Msa0817880:intron 35.0%
ACAATGATCCACAATTTCGA+AGG - chr5_3:53320258-53320277 None:intergenic 35.0%
GAGTATGAAGTGACAAGAAA+AGG - chr5_3:53320449-53320468 None:intergenic 35.0%
! CCACATGACAATGTTTTGTA+GGG - chr5_3:53320498-53320517 None:intergenic 35.0%
! ACCACATGACAATGTTTTGT+AGG - chr5_3:53320499-53320518 None:intergenic 35.0%
GTCCTAACAAATTCCATGTT+TGG + chr5_3:53320579-53320598 Msa0817880:intron 35.0%
! ACCCAAACATGGAATTTGTT+AGG - chr5_3:53320584-53320603 None:intergenic 35.0%
AATTCTGTTCCACCTTTCAT+AGG + chr5_3:53320683-53320702 Msa0817880:intron 35.0%
CGATAATAAGTGCAGTAACA+AGG - chr5_3:53320857-53320876 None:intergenic 35.0%
TGTTACTGCACTTATTATCG+GGG + chr5_3:53320857-53320876 Msa0817880:three_prime_UTR 35.0%
! AAGCTTAACTCCAAGGTTTT+GGG - chr5_3:53320910-53320929 None:intergenic 35.0%
!!! GCTCTTTTGGTTCAATTACA+AGG + chr5_3:53321345-53321364 Msa0817880:three_prime_UTR 35.0%
! TTTGTTATACCTCCAAGTGA+CGG + chr5_3:53321467-53321486 Msa0817880:three_prime_UTR 35.0%
!! ACAAGAGGGTTGATAGAAAT+TGG - chr5_3:53321759-53321778 None:intergenic 35.0%
!! TACTGTTGATGGCATTGATA+AGG - chr5_3:53321803-53321822 None:intergenic 35.0%
! GGAGAATTTCTTTTGCCATA+TGG + chr5_3:53321847-53321866 Msa0817880:three_prime_UTR 35.0%
TTGATCTTCACTCTTAGGTT+TGG + chr5_3:53321903-53321922 Msa0817880:intron 35.0%
TATCAAATGTGATGACTGAG+TGG - chr5_3:53322012-53322031 None:intergenic 35.0%
!!! TGATTTGCCGGTTTCTTTTT+TGG + chr5_3:53322061-53322080 Msa0817880:intron 35.0%
GATCACATCAGTATCTTAAG+AGG - chr5_3:53322215-53322234 None:intergenic 35.0%
!! TCAGTTTCTTTTTGAAGAGG+GGG - chr5_3:53322248-53322267 None:intergenic 35.0%
! TGTGAAGCTTTGCTTCTTTT+TGG + chr5_3:53322299-53322318 Msa0817880:intron 35.0%
TCAAACAAATTCCCAATCCA+AGG - chr5_3:53322402-53322421 None:intergenic 35.0%
! ATGGTGGAAATAGAGAGAAA+TGG - chr5_3:53322428-53322447 None:intergenic 35.0%
TGGTTTCATTCACTTGAGTA+TGG + chr5_3:53322601-53322620 Msa0817880:intron 35.0%
!! TGAATCGGATTCTAAAATGG+TGG - chr5_3:53322640-53322659 None:intergenic 35.0%
CATTTAATCCAAACAGCTCT+CGG + chr5_3:53322854-53322873 Msa0817880:intron 35.0%
AACACTCATTAATCTGGCTA+TGG - chr5_3:53323055-53323074 None:intergenic 35.0%
! TGCTGTATTGCTGTCAATTT+TGG + chr5_3:53323116-53323135 Msa0817880:intron 35.0%
CTTGTCCTAGAAGAGAAAAA+TGG - chr5_3:53323175-53323194 None:intergenic 35.0%
!! TTCTCTTCTAGGACAAGTTA+AGG + chr5_3:53323178-53323197 Msa0817880:intron 35.0%
TAGGACAAGTTAAGGAAAAG+AGG + chr5_3:53323186-53323205 Msa0817880:intron 35.0%
AAACAAGAGTGAGAGACAAA+GGG - chr5_3:53323266-53323285 None:intergenic 35.0%
AAAACAAGAGTGAGAGACAA+AGG - chr5_3:53323267-53323286 None:intergenic 35.0%
AAAACGGCAAATAACGGTAA+CGG - chr5_3:53323359-53323378 None:intergenic 35.0%
AGAAGAACCTAGAAAGAAGA+AGG + chr5_3:53323813-53323832 Msa0817880:intron 35.0%
! TTAAATAACGGTAACGGTTG+CGG - chr5_3:53324030-53324049 None:intergenic 35.0%
AGTTATGGGTGCTTATGAAA+AGG - chr5_3:53324115-53324134 None:intergenic 35.0%
AACTGTAAATGTCCAATTGG+AGG + chr5_3:53324131-53324150 Msa0817880:intron 35.0%
CTCGAGAGGATAAAAGAATT+TGG - chr5_3:53324164-53324183 None:intergenic 35.0%
TCATCAGATAGAGGTGAAAT+TGG - chr5_3:53324512-53324531 None:intergenic 35.0%
AGAGCAATATACTTGTCATC+AGG - chr5_3:53324545-53324564 None:intergenic 35.0%
! GGCTTGAAAATTTTCATCAC+TGG + chr5_3:53324567-53324586 Msa0817880:three_prime_UTR 35.0%
AACAAGCCAAGATCCTTACT+AGG + chr5_3:53319856-53319875 Msa0817880:five_prime_UTR 40.0%
!! AGGTCTTGTTGCATGAAGAT+TGG + chr5_3:53319921-53319940 Msa0817880:intron 40.0%
!! GGTCTTGTTGCATGAAGATT+GGG + chr5_3:53319922-53319941 Msa0817880:intron 40.0%
! TGAATACAGGCTTTTCCTTC+TGG + chr5_3:53320149-53320168 Msa0817880:CDS 40.0%
AGTAGTTCTTGGAACGACAA+CGG - chr5_3:53320202-53320221 None:intergenic 40.0%
!!! CTTTTTTAGCTGTACCTGAG+TGG + chr5_3:53320325-53320344 Msa0817880:intron 40.0%
CCCTACAAAACATTGTCATG+TGG + chr5_3:53320495-53320514 Msa0817880:intron 40.0%
CATACAACCTGTCTTTACTC+TGG + chr5_3:53320713-53320732 Msa0817880:intron 40.0%
TAGTCAACCAGAGTAAAGAC+AGG - chr5_3:53320723-53320742 None:intergenic 40.0%
CAGATTGTCAACAGTTGATC+TGG - chr5_3:53320805-53320824 None:intergenic 40.0%
ATTATCGGGGTACATGAACT+TGG + chr5_3:53320870-53320889 Msa0817880:three_prime_UTR 40.0%
!! TTTCTAGTTGCCCAAAACCT+TGG + chr5_3:53320897-53320916 Msa0817880:three_prime_UTR 40.0%
! CAAGCTTAACTCCAAGGTTT+TGG - chr5_3:53320911-53320930 None:intergenic 40.0%
CAAAACCTTGGAGTTAAGCT+TGG + chr5_3:53320909-53320928 Msa0817880:three_prime_UTR 40.0%
!! TTTGGTGACATGCACGATTT+TGG + chr5_3:53321232-53321251 Msa0817880:intron 40.0%
!! GACATGCACGATTTTGGTAT+TGG + chr5_3:53321238-53321257 Msa0817880:intron 40.0%
! TGCTTAATTTGGTGGCAGAT+AGG + chr5_3:53321323-53321342 Msa0817880:intron 40.0%
AACAAGACCCAATGCAAATC+CGG - chr5_3:53321432-53321451 None:intergenic 40.0%
!! TTTCACGAGTCATTTCTAGC+CGG + chr5_3:53321518-53321537 Msa0817880:three_prime_UTR 40.0%
!! GTTTCTTGGTAACGTTCTCA+AGG + chr5_3:53321725-53321744 Msa0817880:three_prime_UTR 40.0%
TATCAACCCTCTTGTCATCT+GGG + chr5_3:53321764-53321783 Msa0817880:three_prime_UTR 40.0%
ATTCCTGCTGGAGAAATTGA+TGG + chr5_3:53321822-53321841 Msa0817880:three_prime_UTR 40.0%
! TTTTGCCATATGGGGAAGAA+AGG + chr5_3:53321857-53321876 Msa0817880:three_prime_UTR 40.0%
TGATACCTTTCTTCCCCATA+TGG - chr5_3:53321865-53321884 None:intergenic 40.0%
ATCTCAAATGGAACAACCGA+TGG - chr5_3:53321929-53321948 None:intergenic 40.0%
!!! TTGCCGGTTTCTTTTTTGGA+TGG + chr5_3:53322065-53322084 Msa0817880:intron 40.0%
AGTTGCTCATAACCTTGTCA+GGG - chr5_3:53322182-53322201 None:intergenic 40.0%
AAGGTTATGAGCAACTCCAT+TGG + chr5_3:53322186-53322205 Msa0817880:intron 40.0%
AGGTTATGAGCAACTCCATT+GGG + chr5_3:53322187-53322206 Msa0817880:intron 40.0%
!!! GCTTTGCTTCTTTTTGGTTC+TGG + chr5_3:53322305-53322324 Msa0817880:intron 40.0%
TCAAGAAACCACGTTTCTTG+TGG + chr5_3:53322350-53322369 Msa0817880:intron 40.0%
!! GATTCTAAAATGGTGGTGGA+TGG - chr5_3:53322633-53322652 None:intergenic 40.0%
!! ATCGGATTCTAAAATGGTGG+TGG - chr5_3:53322637-53322656 None:intergenic 40.0%
GTTCATAAAGGTGAAGCCTT+GGG - chr5_3:53322717-53322736 None:intergenic 40.0%
TGTTCATAAAGGTGAAGCCT+TGG - chr5_3:53322718-53322737 None:intergenic 40.0%
! ATATGCATCTGGAATGAGCA+TGG - chr5_3:53322785-53322804 None:intergenic 40.0%
TAGGTCTTGGTATATGCATC+TGG - chr5_3:53322796-53322815 None:intergenic 40.0%
AGAGTCGAATGCTATGCTTT+GGG - chr5_3:53323014-53323033 None:intergenic 40.0%
! TGAGTGTTATTCCAAACCTG+CGG + chr5_3:53323067-53323086 Msa0817880:intron 40.0%
! ATATGGCTTGCAGAATACCT+CGG - chr5_3:53323144-53323163 None:intergenic 40.0%
!! AGCCACCATTTTTCTCTTCT+AGG + chr5_3:53323167-53323186 Msa0817880:intron 40.0%
GTCCTAGAAGAGAAAAATGG+TGG - chr5_3:53323172-53323191 None:intergenic 40.0%
AATCAAGCAAGGAGAACACT+TGG - chr5_3:53323212-53323231 None:intergenic 40.0%
TGAGTGTCCTTATGTCTGTA+CGG - chr5_3:53323241-53323260 None:intergenic 40.0%
AACAAGAGTGAGAGACAAAG+GGG - chr5_3:53323265-53323284 None:intergenic 40.0%
! TGGCCTATACCGTTTTGTAA+CGG - chr5_3:53323333-53323352 None:intergenic 40.0%
ACTATGTTTCGCGGTTGTAA+CGG - chr5_3:53323486-53323505 None:intergenic 40.0%
ACAACCGCGAAACATAGTTA+CGG + chr5_3:53323488-53323507 Msa0817880:intron 40.0%
! GAGTTGATTGTGTCTTTGTG+TGG + chr5_3:53323692-53323711 Msa0817880:intron 40.0%
GGAATCTGTGTATGAGAGTT+TGG + chr5_3:53323713-53323732 Msa0817880:intron 40.0%
AACCTAGAAAGAAGAAGGTG+AGG + chr5_3:53323818-53323837 Msa0817880:intron 40.0%
! CGTTAAGGTTTTCACGGTTT+CGG - chr5_3:53323998-53324017 None:intergenic 40.0%
TAGAGATGTGGTACAAACCA+AGG - chr5_3:53324055-53324074 None:intergenic 40.0%
TGTAAATGTCCAATTGGAGG+AGG + chr5_3:53324134-53324153 Msa0817880:intron 40.0%
TAAGAAACTAGCAACTCGAG+AGG - chr5_3:53324178-53324197 None:intergenic 40.0%
CATGCAGGTACATAATCAAG+AGG - chr5_3:53324236-53324255 None:intergenic 40.0%
!! GGATTTTCGATTGTGTTGCT+TGG + chr5_3:53324419-53324438 Msa0817880:three_prime_UTR 40.0%
CACACACCTAGTAAGGATCT+TGG - chr5_3:53319865-53319884 None:intergenic 45.0%
AGATAGGCACACACCTAGTA+AGG - chr5_3:53319872-53319891 None:intergenic 45.0%
!! TGGGTCCTCATTTTTCTGCT+AGG + chr5_3:53319941-53319960 Msa0817880:intron 45.0%
!! GGGTCCTCATTTTTCTGCTA+GGG + chr5_3:53319942-53319961 Msa0817880:intron 45.0%
!! TCCTCATTTTTCTGCTAGGG+TGG + chr5_3:53319945-53319964 Msa0817880:intron 45.0%
TCCACCCTAGCAGAAAAATG+AGG - chr5_3:53319949-53319968 None:intergenic 45.0%
! TAGGGTGGAGTGCTATTCAA+GGG + chr5_3:53319960-53319979 Msa0817880:intron 45.0%
TATTCAAGGGAAACCTGCGA+GGG + chr5_3:53319973-53319992 Msa0817880:five_prime_UTR 45.0%
TTTCCTTCTGGTCAATCCTG+AGG + chr5_3:53320161-53320180 Msa0817880:CDS 45.0%
AAGTACGTACGAGTTGTCTC+TGG - chr5_3:53320231-53320250 None:intergenic 45.0%
TTAGCTGTACCTGAGTGGTT+TGG + chr5_3:53320330-53320349 Msa0817880:intron 45.0%
TTGTTAAAGGATGGCCTACC+TGG + chr5_3:53320828-53320847 Msa0817880:three_prime_UTR 45.0%
TGCCAGCTAGGAACAAAGTA+CGG - chr5_3:53320939-53320958 None:intergenic 45.0%
TATCATACAACCTGCCAGCT+AGG - chr5_3:53320951-53320970 None:intergenic 45.0%
ACCAATTGCCGGATTTGCAT+TGG + chr5_3:53321421-53321440 Msa0817880:three_prime_UTR 45.0%
CCAATTGCCGGATTTGCATT+GGG + chr5_3:53321422-53321441 Msa0817880:three_prime_UTR 45.0%
!! GGTCTTGTTCTTCTGCTTCT+AGG + chr5_3:53321443-53321462 Msa0817880:three_prime_UTR 45.0%
ATACCTCCAAGTGACGGTAT+TGG + chr5_3:53321473-53321492 Msa0817880:three_prime_UTR 45.0%
ACAACACCAATACCGTCACT+TGG - chr5_3:53321482-53321501 None:intergenic 45.0%
ATATAGCTTACCAATGCCGC+CGG - chr5_3:53321540-53321559 None:intergenic 45.0%
!! CTTGGTAACGTTCTCAAGGA+AGG + chr5_3:53321729-53321748 Msa0817880:three_prime_UTR 45.0%
CTATCAACCCTCTTGTCATC+TGG + chr5_3:53321763-53321782 Msa0817880:three_prime_UTR 45.0%
TCCAGCAGGAATACTGTTGA+TGG - chr5_3:53321814-53321833 None:intergenic 45.0%
CTGCTGGAGAAATTGATGGA+GGG + chr5_3:53321826-53321845 Msa0817880:three_prime_UTR 45.0%
TCACTCTTAGGTTTGGCCAT+CGG + chr5_3:53321910-53321929 Msa0817880:intron 45.0%
GAGTTGCTCATAACCTTGTC+AGG - chr5_3:53322183-53322202 None:intergenic 45.0%
!! GTATCTTAAGAGGCACCCAA+TGG - chr5_3:53322205-53322224 None:intergenic 45.0%
GTCTTTGGCATGCAATGATC+TGG - chr5_3:53322695-53322714 None:intergenic 45.0%
! GTTGCGTTTTCTCAGTACAC+AGG - chr5_3:53322824-53322843 None:intergenic 45.0%
AGCAAACGGCTGCTGTAATT+TGG - chr5_3:53322886-53322905 None:intergenic 45.0%
GGTGACAGTAGATTTGACAC+AGG - chr5_3:53322914-53322933 None:intergenic 45.0%
CAGAGTCGAATGCTATGCTT+TGG - chr5_3:53323015-53323034 None:intergenic 45.0%
!! CTTATTTTTCGCCGCAGGTT+TGG - chr5_3:53323081-53323100 None:intergenic 45.0%
CAAACCTGCGGCGAAAAATA+AGG + chr5_3:53323079-53323098 Msa0817880:intron 45.0%
!!! AAAGCCTTATTTTTCGCCGC+AGG - chr5_3:53323086-53323105 None:intergenic 45.0%
!!! TGCTGTCAATTTTGGTTCCG+AGG + chr5_3:53323124-53323143 Msa0817880:intron 45.0%
TACGGTTTGCGAATCAAGCA+AGG - chr5_3:53323223-53323242 None:intergenic 45.0%
TCGCAAACCGTACAGACATA+AGG + chr5_3:53323231-53323250 Msa0817880:intron 45.0%
! TTTTGTAACGGCCGATATCG+CGG - chr5_3:53323321-53323340 None:intergenic 45.0%
CGATATCGGCCGTTACAAAA+CGG + chr5_3:53323321-53323340 Msa0817880:intron 45.0%
! GCAAATAACGGTAACGGTGA+TGG - chr5_3:53323353-53323372 None:intergenic 45.0%
ACGGTGTTTCGAGGTTGTAA+CGG - chr5_3:53323425-53323444 None:intergenic 45.0%
GCATCCGTAACTATGTTTCG+CGG - chr5_3:53323495-53323514 None:intergenic 45.0%
TGCCTCCTCTTCAATCTTCA+TGG + chr5_3:53323563-53323582 Msa0817880:intron 45.0%
GAAGGCCATGAAGATTGAAG+AGG - chr5_3:53323571-53323590 None:intergenic 45.0%
CACCTCACCTTCTTCTTTCT+AGG - chr5_3:53323823-53323842 None:intergenic 45.0%
AAAGAAGAAGGTGAGGTGAG+AGG + chr5_3:53323825-53323844 Msa0817880:intron 45.0%
AAGGTGAGGTGAGAGGAATT+GGG + chr5_3:53323832-53323851 Msa0817880:intron 45.0%
TTTGGAAAGCCTCCTCCAAT+TGG - chr5_3:53324146-53324165 None:intergenic 45.0%
! CTAGGGTGGAGTGCTATTCA+AGG + chr5_3:53319959-53319978 Msa0817880:intron 50.0%
CTATTCAAGGGAAACCTGCG+AGG + chr5_3:53319972-53319991 Msa0817880:five_prime_UTR 50.0%
!! TTTTAGAAGCTTGCCCTCGC+AGG - chr5_3:53319989-53320008 None:intergenic 50.0%
CATCCTCAGGATTGACCAGA+AGG - chr5_3:53320167-53320186 None:intergenic 50.0%
TCCTGAGGATGATAAGCCAG+TGG + chr5_3:53320176-53320195 Msa0817880:CDS 50.0%
!!! TGGTTTGGTGCTGCGTCTTT+TGG + chr5_3:53320345-53320364 Msa0817880:CDS 50.0%
GGACTCCAAGCTTAACTCCA+AGG - chr5_3:53320917-53320936 None:intergenic 50.0%
TCCCGTACTTTGTTCCTAGC+TGG + chr5_3:53320934-53320953 Msa0817880:three_prime_UTR 50.0%
GCCAGCTAGGAACAAAGTAC+GGG - chr5_3:53320938-53320957 None:intergenic 50.0%
GTACTTTGTTCCTAGCTGGC+AGG + chr5_3:53320938-53320957 Msa0817880:three_prime_UTR 50.0%
! TGGTGGCAGATAGGCTCTTT+TGG + chr5_3:53321332-53321351 Msa0817880:intron 50.0%
TTGCTCAAGATTGCAGCTGC+TGG + chr5_3:53321398-53321417 Msa0817880:three_prime_UTR 50.0%
CCCAATGCAAATCCGGCAAT+TGG - chr5_3:53321425-53321444 None:intergenic 50.0%
ACACCAATACCGTCACTTGG+AGG - chr5_3:53321479-53321498 None:intergenic 50.0%
GCCATCAACAGTATTCCTGC+TGG + chr5_3:53321810-53321829 Msa0817880:three_prime_UTR 50.0%
CCTCCATCAATTTCTCCAGC+AGG - chr5_3:53321828-53321847 None:intergenic 50.0%
CCTGCTGGAGAAATTGATGG+AGG + chr5_3:53321825-53321844 Msa0817880:three_prime_UTR 50.0%
TGCTCATAACCTTGTCAGGG+CGG - chr5_3:53322179-53322198 None:intergenic 50.0%
GAGGATCACCACAAGAAACG+TGG - chr5_3:53322361-53322380 None:intergenic 50.0%
CATTGCATGCCAAAGACCCA+AGG + chr5_3:53322698-53322717 Msa0817880:intron 50.0%
AAGGTGAAGCCTTGGGTCTT+TGG - chr5_3:53322710-53322729 None:intergenic 50.0%
! TACACAGGAGGCATAGGTCT+TGG - chr5_3:53322809-53322828 None:intergenic 50.0%
! TCTCAGTACACAGGAGGCAT+AGG - chr5_3:53322815-53322834 None:intergenic 50.0%
! GCGTTTTCTCAGTACACAGG+AGG - chr5_3:53322821-53322840 None:intergenic 50.0%
TGACACAGGCAGACAGCAAA+CGG - chr5_3:53322900-53322919 None:intergenic 50.0%
ACGGCTAGAACAACTGCACA+CGG - chr5_3:53322935-53322954 None:intergenic 50.0%
! GGAGAAGCCAGACCAGATTT+TGG - chr5_3:53322990-53323009 None:intergenic 50.0%
! GTCGAATGCTATGCTTTGGG+AGG - chr5_3:53323011-53323030 None:intergenic 50.0%
CGGCCGTTACAAAACGGTAT+AGG + chr5_3:53323327-53323346 Msa0817880:intron 50.0%
GTTGTAACGGCGTTACGTAG+CGG - chr5_3:53323412-53323431 None:intergenic 50.0%
TGTTTCGCGGTTGTAACGGT+GGG - chr5_3:53323482-53323501 None:intergenic 50.0%
ATGTTTCGCGGTTGTAACGG+TGG - chr5_3:53323483-53323502 None:intergenic 50.0%
GGCCATGAAGATTGAAGAGG+AGG - chr5_3:53323568-53323587 None:intergenic 50.0%
GAAGGTGAGGTGAGAGGAAT+TGG + chr5_3:53323831-53323850 Msa0817880:intron 50.0%
TGAGAGGAATTGGGCGTAGT+TGG + chr5_3:53323841-53323860 Msa0817880:intron 50.0%
GAGAGGAATTGGGCGTAGTT+GGG + chr5_3:53323842-53323861 Msa0817880:intron 50.0%
TTCACGGTTTCGGACTGTCA+CGG - chr5_3:53323988-53324007 None:intergenic 50.0%
! CGGTCGCGTTAAGGTTTTCA+CGG - chr5_3:53324004-53324023 None:intergenic 50.0%
GTGGAGGGAAAGTAGAGATG+TGG - chr5_3:53324067-53324086 None:intergenic 50.0%
CAGGCTTCAATTCGCTTCAC+AGG + chr5_3:53324398-53324417 Msa0817880:intron 50.0%
!! GCCACTGGCTTATCATCCTC+AGG - chr5_3:53320180-53320199 None:intergenic 55.0%
GGGGACATTGCGAAGCAGTA+AGG - chr5_3:53320388-53320407 None:intergenic 55.0%
CAGTAACAAGGGCTCCAGGT+AGG - chr5_3:53320845-53320864 None:intergenic 55.0%
AGTGCAGTAACAAGGGCTCC+AGG - chr5_3:53320849-53320868 None:intergenic 55.0%
!! CACGAGTCATTTCTAGCCGG+CGG + chr5_3:53321521-53321540 Msa0817880:three_prime_UTR 55.0%
!! TCATTTCTAGCCGGCGGCAT+TGG + chr5_3:53321527-53321546 Msa0817880:three_prime_UTR 55.0%
ACCCTCTTGTCATCTGGGCT+TGG + chr5_3:53321769-53321788 Msa0817880:three_prime_UTR 55.0%
CCCAAGCCCAGATGACAAGA+GGG - chr5_3:53321773-53321792 None:intergenic 55.0%
CCCTCTTGTCATCTGGGCTT+GGG + chr5_3:53321770-53321789 Msa0817880:three_prime_UTR 55.0%
AGACTTGGCAGGCTGGAACA+CGG - chr5_3:53322954-53322973 None:intergenic 55.0%
CGGGAACGTTACCGCGATAT+CGG + chr5_3:53323307-53323326 Msa0817880:intron 55.0%
! GGCGAGTTTTGCGGTCGTAA+CGG - chr5_3:53323444-53323463 None:intergenic 55.0%
! GGCTGTAACGGCGAGTTTTG+CGG - chr5_3:53323453-53323472 None:intergenic 55.0%
! GGTTGTAACGGTGGGTTTCG+CGG - chr5_3:53323474-53323493 None:intergenic 55.0%
GGAATTGGGCGTAGTTGGGT+AGG + chr5_3:53323846-53323865 Msa0817880:intron 55.0%
CGGACGTTGCGTACGTATTG+CGG - chr5_3:53323968-53323987 None:intergenic 55.0%
! AACGGTAACGGTTGCGGTCA+CGG - chr5_3:53324024-53324043 None:intergenic 55.0%
CTTGGAACGACAACGGCCAC+TGG - chr5_3:53320195-53320214 None:intergenic 60.0%
GACGCAGCACCAAACCACTC+AGG - chr5_3:53320342-53320361 None:intergenic 60.0%
GCAGCTGCTGGACCAATTGC+CGG + chr5_3:53321410-53321429 Msa0817880:three_prime_UTR 60.0%
GCCCAAGCCCAGATGACAAG+AGG - chr5_3:53321774-53321793 None:intergenic 60.0%
CTTGTCATCTGGGCTTGGGC+AGG + chr5_3:53321774-53321793 Msa0817880:three_prime_UTR 60.0%
GGCAGAAGCCGAGAGCTGTT+TGG - chr5_3:53322865-53322884 None:intergenic 60.0%
TCCAGCCTGCCAAGTCTGCT+TGG + chr5_3:53322957-53322976 Msa0817880:intron 60.0%
CCAGCCTGCCAAGTCTGCTT+GGG + chr5_3:53322958-53322977 Msa0817880:intron 60.0%
CTGCCAAGTCTGCTTGGGCT+CGG + chr5_3:53322963-53322982 Msa0817880:intron 60.0%
TGCCAAGTCTGCTTGGGCTC+GGG + chr5_3:53322964-53322983 Msa0817880:intron 60.0%
CTTGGGCTCGGGCCAAAATC+TGG + chr5_3:53322975-53322994 Msa0817880:intron 60.0%
GCTCGGGCCAAAATCTGGTC+TGG + chr5_3:53322980-53322999 Msa0817880:intron 60.0%
GCGGTCGTAACGGTGTTTCG+AGG - chr5_3:53323434-53323453 None:intergenic 60.0%
! GGTGGGTTTCGCGGCTGTAA+CGG - chr5_3:53323465-53323484 None:intergenic 60.0%
TGGGCGTAGTTGGGTAGGTG+AGG + chr5_3:53323851-53323870 Msa0817880:intron 60.0%
GGGCGTAGTTGGGTAGGTGA+GGG + chr5_3:53323852-53323871 Msa0817880:intron 60.0%
CGTACGTATTGCGGTCGTCG+CGG - chr5_3:53323959-53323978 None:intergenic 60.0%
TTGCGGTCACGGTCGCGTTA+AGG - chr5_3:53324013-53324032 None:intergenic 60.0%
GTGATGCAGCCGCCCTGACA+AGG + chr5_3:53322167-53322186 Msa0817880:intron 65.0%
CCCAAGCAGACTTGGCAGGC+TGG - chr5_3:53322961-53322980 None:intergenic 65.0%
CGAGCCCAAGCAGACTTGGC+AGG - chr5_3:53322965-53322984 None:intergenic 65.0%
GGCCCGAGCCCAAGCAGACT+TGG - chr5_3:53322969-53322988 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53319849 53324618 53319849 ID=Msa0817880;Name=Msa0817880
chr5_3 mRNA 53319849 53324618 53319849 ID=Msa0817880-mRNA-1;Parent=Msa0817880;Name=Msa0817880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=78|1|0.87|1|0.85|0.87|8|721|81
chr5_3 exon 53319849 53319877 53319849 ID=Msa0817880-mRNA-1:exon:16070;Parent=Msa0817880-mRNA-1
chr5_3 exon 53319963 53320037 53319963 ID=Msa0817880-mRNA-1:exon:16071;Parent=Msa0817880-mRNA-1
chr5_3 exon 53320135 53320240 53320135 ID=Msa0817880-mRNA-1:exon:16072;Parent=Msa0817880-mRNA-1
chr5_3 exon 53320334 53320427 53320334 ID=Msa0817880-mRNA-1:exon:16073;Parent=Msa0817880-mRNA-1
chr5_3 exon 53320806 53320959 53320806 ID=Msa0817880-mRNA-1:exon:16074;Parent=Msa0817880-mRNA-1
chr5_3 exon 53321341 53321548 53321341 ID=Msa0817880-mRNA-1:exon:16075;Parent=Msa0817880-mRNA-1
chr5_3 exon 53321718 53321878 53321718 ID=Msa0817880-mRNA-1:exon:16076;Parent=Msa0817880-mRNA-1
chr5_3 exon 53324401 53324618 53324401 ID=Msa0817880-mRNA-1:exon:16077;Parent=Msa0817880-mRNA-1
chr5_3 five_prime_UTR 53319849 53319877 53319849 ID=Msa0817880-mRNA-1:five_prime_utr;Parent=Msa0817880-mRNA-1
chr5_3 five_prime_UTR 53319963 53320011 53319963 ID=Msa0817880-mRNA-1:five_prime_utr;Parent=Msa0817880-mRNA-1
chr5_3 CDS 53320012 53320037 53320012 ID=Msa0817880-mRNA-1:cds;Parent=Msa0817880-mRNA-1
chr5_3 CDS 53320135 53320240 53320135 ID=Msa0817880-mRNA-1:cds;Parent=Msa0817880-mRNA-1
chr5_3 CDS 53320334 53320427 53320334 ID=Msa0817880-mRNA-1:cds;Parent=Msa0817880-mRNA-1
chr5_3 CDS 53320806 53320825 53320806 ID=Msa0817880-mRNA-1:cds;Parent=Msa0817880-mRNA-1
chr5_3 three_prime_UTR 53320826 53320959 53320826 ID=Msa0817880-mRNA-1:three_prime_utr;Parent=Msa0817880-mRNA-1
chr5_3 three_prime_UTR 53321341 53321548 53321341 ID=Msa0817880-mRNA-1:three_prime_utr;Parent=Msa0817880-mRNA-1
chr5_3 three_prime_UTR 53321718 53321878 53321718 ID=Msa0817880-mRNA-1:three_prime_utr;Parent=Msa0817880-mRNA-1
chr5_3 three_prime_UTR 53324401 53324618 53324401 ID=Msa0817880-mRNA-1:three_prime_utr;Parent=Msa0817880-mRNA-1
Gene Sequence

>Msa0817880

ATGATAAGATATCAAAGAGATTGCAAGATAAATTTGGAGATGAATACAGGCTTTTCCTTCTGGTCAATCCTGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTATCAACTGTTGACAATCTGA

Protein sequence

>Msa0817880

MIRYQRDCKINLEMNTGFSFWSILRMISQWPLSFQELLYNQRQLLYLSGLVLRLLESSQCLPYCFAMSPICNPIYYQLLTI*