AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156430 MtrunA17_Chr7g0249821 95.876 97 3 1 1 96 1 97 1.17e-66 197
Msa1156430 MtrunA17_Chr7g0249831 69.388 98 28 2 1 96 1 98 2.90e-42 135
Msa1156430 MtrunA17_Chr5g0396151 68.367 98 29 2 1 96 1 98 5.30e-42 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156430 AT4G10040.1 69.388 98 28 2 1 96 1 98 6.16e-42 135
Msa1156430 AT1G22840.1 67.347 98 30 2 1 96 1 98 3.22e-40 130
Msa1156430 AT1G22840.2 63.636 88 29 3 1 86 1 87 5.18e-31 107

Find 54 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACCTGCAGCACGGTTTC+TGG 0.109944 7_4:-44710682 None:intergenic
TGAAAACCAGCACTCATTTC+TGG 0.143012 7_4:-44710532 None:intergenic
ATCAATGTGTTGTACCTTCT+TGG 0.250097 7_4:-44711017 None:intergenic
TCAATGTGTTGTACCTTCTT+GGG 0.277885 7_4:-44711016 None:intergenic
CCCAATCTGAATGGTTTGTT+TGG 0.305862 7_4:+44710893 Msa1156430:CDS
GCTGGGTTCACCACGTTAGA+AGG 0.319345 7_4:-44711827 None:intergenic
ACAAGAACATGTCTATGAAT+TGG 0.322531 7_4:+44710960 Msa1156430:CDS
GGTTTGTTTGGAAGTCAATC+TGG 0.344506 7_4:+44710905 Msa1156430:CDS
TATTATGCTATGTGGACTTA+TGG 0.348100 7_4:-44710571 None:intergenic
GTGCTGCAGGTGAGAAGTTC+AGG 0.352217 7_4:+44710691 Msa1156430:CDS
GCAACACAATATGAATATTC+AGG 0.355918 7_4:-44710935 None:intergenic
GATTATCACGTTCCTGGCCC+TGG 0.377704 7_4:-44711296 None:intergenic
TCACCTGCAGCACGGTTTCT+GGG 0.386514 7_4:-44710681 None:intergenic
CAAGAACATGTCTATGAATT+GGG 0.403729 7_4:+44710961 Msa1156430:CDS
CAATAAGATTATCACGTTCC+TGG 0.419432 7_4:-44711302 None:intergenic
ATTTCTGGAGCCACAGAAAT+CGG 0.422667 7_4:-44710517 None:intergenic
TCCAAACAAACCATTCAGAT+TGG 0.443064 7_4:-44710894 None:intergenic
ATTATCACGTTCCTGGCCCT+GGG 0.444706 7_4:-44711295 None:intergenic
AGAATCTCCTTCTCCTCAAT+AGG 0.447991 7_4:-44711792 None:intergenic
AAATCAATTGATAAATGATA+AGG 0.461935 7_4:-44710594 None:intergenic
CGTCATTCCTATTGAGGAGA+AGG 0.465126 7_4:+44711785 Msa1156430:CDS
GTACCTTCTTGGGGTTAAGC+AGG 0.466044 7_4:-44711006 None:intergenic
GAATTTCGTCATTCCTATTG+AGG 0.468888 7_4:+44711779 Msa1156430:CDS
TCCTGCTCTTAAGAAGCCCC+AGG 0.485526 7_4:+44711278 Msa1156430:CDS
CCAAACAAACCATTCAGATT+GGG 0.496498 7_4:-44710893 None:intergenic
CTTCCCAGAAACCGTGCTGC+AGG 0.506820 7_4:+44710678 Msa1156430:CDS
TTTGTGAACGGCTCCTATGT+TGG 0.508283 7_4:-44710736 None:intergenic
TATTAAACCTTGTTTGTGAA+CGG 0.508923 7_4:-44710748 None:intergenic
GTGGCTCCAGAAATGAGTGC+TGG 0.518727 7_4:+44710526 Msa1156430:five_prime_UTR
CTTAGTTACATAGCCTGGTA+CGG 0.518919 7_4:+44711738 Msa1156430:intron
GTTTGTTTGGAAGTCAATCT+GGG 0.526603 7_4:+44710906 Msa1156430:CDS
ACCTTCTCGTACACCGTACC+AGG 0.533300 7_4:-44711751 None:intergenic
CAATGTGTTGTACCTTCTTG+GGG 0.536623 7_4:-44711015 None:intergenic
GGAGCCACAGAAATCGGATA+AGG 0.541285 7_4:-44710511 None:intergenic
GCTCAATGCCACACCAACAT+AGG 0.557024 7_4:+44710723 Msa1156430:CDS
GTGAGAAGAAATCTAAAGAG+AGG 0.557208 7_4:-44710458 None:intergenic
GCACGGTTTCTGGGAAGTGT+CGG 0.560380 7_4:-44710672 None:intergenic
GAATTGGGAGGAAAAGATCA+TGG 0.562314 7_4:+44710976 Msa1156430:CDS
ACATCAGGACCCAATCTGAA+TGG 0.562701 7_4:+44710884 Msa1156430:intron
TGATAAGGTATTATGCTATG+TGG 0.563440 7_4:-44710579 None:intergenic
GCACATCCTCGATACGAAGA+TGG 0.574573 7_4:+44711251 Msa1156430:intron
CTTCTCACAACCAAACACAA+AGG 0.598361 7_4:+44710473 Msa1156430:five_prime_UTR
ATAGGAGCCGTTCACAAACA+AGG 0.604312 7_4:+44710741 Msa1156430:CDS
TGAACTTCTCACCTGCAGCA+CGG 0.611271 7_4:-44710689 None:intergenic
GCCTGGTACGGTGTACGAGA+AGG 0.617455 7_4:+44711750 Msa1156430:intron
CTATCCTTATCCGATTTCTG+TGG 0.621490 7_4:+44710507 Msa1156430:five_prime_UTR
TATGCTATGTGGACTTATGG+AGG 0.634431 7_4:-44710568 None:intergenic
CAACAAGAGTCCTTCTAACG+TGG 0.639719 7_4:+44711817 Msa1156430:CDS
GAACATGTCTATGAATTGGG+AGG 0.658810 7_4:+44710964 Msa1156430:CDS
GAAATACCATCTTCGTATCG+AGG 0.660566 7_4:-44711257 None:intergenic
TTACCTGCTTAACCCCAAGA+AGG 0.666741 7_4:+44711003 Msa1156430:CDS
CCTGCTCTTAAGAAGCCCCA+GGG 0.667349 7_4:+44711279 Msa1156430:CDS
TTATCACGTTCCTGGCCCTG+GGG 0.669948 7_4:-44711294 None:intergenic
GAACGGCTCCTATGTTGGTG+TGG 0.672356 7_4:-44710731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATCATAATAAATTAA+TGG - chr7_4:44711158-44711177 None:intergenic 10.0%
!! GTATAATCATAATAAATTAA+TGG - chr7_4:44711158-44711177 None:intergenic 10.0%
!! AAATCAATTGATAAATGATA+AGG - chr7_4:44710597-44710616 None:intergenic 15.0%
!!! ATGTTTCTTTTTATATGAAA+TGG + chr7_4:44711050-44711069 Msa1156430:intron 15.0%
!! AAATCAATTGATAAATGATA+AGG - chr7_4:44710597-44710616 None:intergenic 15.0%
!!! ATGTTTCTTTTTATATGAAA+TGG + chr7_4:44711050-44711069 Msa1156430:intron 15.0%
!! CATCATATCATAATATTCTA+AGG + chr7_4:44710833-44710852 Msa1156430:intron 20.0%
!! TTTATTATGATTATACTGAG+AGG + chr7_4:44711162-44711181 Msa1156430:intron 20.0%
!!! TATCATATGTAGTATACTTT+TGG + chr7_4:44711367-44711386 Msa1156430:intron 20.0%
!!! TCTTGTAATTTTTCTTACTT+TGG + chr7_4:44711675-44711694 Msa1156430:intron 20.0%
!! CATCATATCATAATATTCTA+AGG + chr7_4:44710833-44710852 Msa1156430:intron 20.0%
!! TTTATTATGATTATACTGAG+AGG + chr7_4:44711162-44711181 Msa1156430:intron 20.0%
!!! TATCATATGTAGTATACTTT+TGG + chr7_4:44711367-44711386 Msa1156430:intron 20.0%
!!! TCTTGTAATTTTTCTTACTT+TGG + chr7_4:44711675-44711694 Msa1156430:intron 20.0%
!!! TGCTGGTTTTCAATAAATTT+TGG + chr7_4:44710543-44710562 Msa1156430:five_prime_UTR 25.0%
!!! GCTGGTTTTCAATAAATTTT+GGG + chr7_4:44710544-44710563 Msa1156430:five_prime_UTR 25.0%
!! TATTAAACCTTGTTTGTGAA+CGG - chr7_4:44710751-44710770 None:intergenic 25.0%
!!! TTTTATTTGTTGTCAACATC+AGG + chr7_4:44710869-44710888 Msa1156430:intron 25.0%
! TTCATAGTAGAAAACAACAA+AGG - chr7_4:44711123-44711142 None:intergenic 25.0%
!! TCTTATTGCATATCTGAAAT+AGG + chr7_4:44711317-44711336 Msa1156430:intron 25.0%
!!! TAAATTCAACCATTTTCAAG+CGG - chr7_4:44711343-44711362 None:intergenic 25.0%
! TTGTAATTAGCACTCTATAT+TGG + chr7_4:44711432-44711451 Msa1156430:intron 25.0%
! CAAAAGGAACAAAATAACAT+TGG - chr7_4:44711483-44711502 None:intergenic 25.0%
!! TTTAAAGGTTGTTATTGTGT+AGG + chr7_4:44711510-44711529 Msa1156430:intron 25.0%
! AGCATAAATCAGTTATTTGT+AGG + chr7_4:44711635-44711654 Msa1156430:intron 25.0%
!!! TGCTGGTTTTCAATAAATTT+TGG + chr7_4:44710543-44710562 Msa1156430:five_prime_UTR 25.0%
!!! GCTGGTTTTCAATAAATTTT+GGG + chr7_4:44710544-44710563 Msa1156430:five_prime_UTR 25.0%
!! TATTAAACCTTGTTTGTGAA+CGG - chr7_4:44710751-44710770 None:intergenic 25.0%
!!! TTTTATTTGTTGTCAACATC+AGG + chr7_4:44710869-44710888 Msa1156430:intron 25.0%
! TTCATAGTAGAAAACAACAA+AGG - chr7_4:44711123-44711142 None:intergenic 25.0%
!! TCTTATTGCATATCTGAAAT+AGG + chr7_4:44711317-44711336 Msa1156430:intron 25.0%
!!! TAAATTCAACCATTTTCAAG+CGG - chr7_4:44711343-44711362 None:intergenic 25.0%
! TTGTAATTAGCACTCTATAT+TGG + chr7_4:44711432-44711451 Msa1156430:intron 25.0%
! CAAAAGGAACAAAATAACAT+TGG - chr7_4:44711483-44711502 None:intergenic 25.0%
!! TTTAAAGGTTGTTATTGTGT+AGG + chr7_4:44711510-44711529 Msa1156430:intron 25.0%
! AGCATAAATCAGTTATTTGT+AGG + chr7_4:44711635-44711654 Msa1156430:intron 25.0%
TATTATGCTATGTGGACTTA+TGG - chr7_4:44710574-44710593 None:intergenic 30.0%
! TGATAAGGTATTATGCTATG+TGG - chr7_4:44710582-44710601 None:intergenic 30.0%
GCAACACAATATGAATATTC+AGG - chr7_4:44710938-44710957 None:intergenic 30.0%
ACAAGAACATGTCTATGAAT+TGG + chr7_4:44710960-44710979 Msa1156430:CDS 30.0%
CAAGAACATGTCTATGAATT+GGG + chr7_4:44710961-44710980 Msa1156430:CDS 30.0%
TTAATCGACATAGACTTTCA+AGG - chr7_4:44711191-44711210 None:intergenic 30.0%
! GTTCTGGATATTTAATTACC+TGG + chr7_4:44711391-44711410 Msa1156430:intron 30.0%
!! TCCTTTTGCATTGCTTTTAA+AGG + chr7_4:44711495-44711514 Msa1156430:intron 30.0%
! ACCTTTAAAAGCAATGCAAA+AGG - chr7_4:44711499-44711518 None:intergenic 30.0%
GTTTGAACACATTAGTTGTT+CGG + chr7_4:44711539-44711558 Msa1156430:intron 30.0%
GCTGAAATGAATGCATATAT+AGG + chr7_4:44711701-44711720 Msa1156430:intron 30.0%
! TTTTTCTTAGTTACATAGCC+TGG + chr7_4:44711733-44711752 Msa1156430:intron 30.0%
TATTATGCTATGTGGACTTA+TGG - chr7_4:44710574-44710593 None:intergenic 30.0%
! TGATAAGGTATTATGCTATG+TGG - chr7_4:44710582-44710601 None:intergenic 30.0%
GCAACACAATATGAATATTC+AGG - chr7_4:44710938-44710957 None:intergenic 30.0%
ACAAGAACATGTCTATGAAT+TGG + chr7_4:44710960-44710979 Msa1156430:CDS 30.0%
CAAGAACATGTCTATGAATT+GGG + chr7_4:44710961-44710980 Msa1156430:CDS 30.0%
TTAATCGACATAGACTTTCA+AGG - chr7_4:44711191-44711210 None:intergenic 30.0%
! GTTCTGGATATTTAATTACC+TGG + chr7_4:44711391-44711410 Msa1156430:intron 30.0%
!! TCCTTTTGCATTGCTTTTAA+AGG + chr7_4:44711495-44711514 Msa1156430:intron 30.0%
! ACCTTTAAAAGCAATGCAAA+AGG - chr7_4:44711499-44711518 None:intergenic 30.0%
GTTTGAACACATTAGTTGTT+CGG + chr7_4:44711539-44711558 Msa1156430:intron 30.0%
GCTGAAATGAATGCATATAT+AGG + chr7_4:44711701-44711720 Msa1156430:intron 30.0%
! TTTTTCTTAGTTACATAGCC+TGG + chr7_4:44711733-44711752 Msa1156430:intron 30.0%
GTGAGAAGAAATCTAAAGAG+AGG - chr7_4:44710461-44710480 None:intergenic 35.0%
CTGCAAAAATCCTTTGTGTT+TGG - chr7_4:44710486-44710505 None:intergenic 35.0%
! CAAACACAAAGGATTTTTGC+AGG + chr7_4:44710484-44710503 Msa1156430:five_prime_UTR 35.0%
!! CTACTTGCTTTTCTCTCAAA+TGG + chr7_4:44710638-44710657 Msa1156430:exon 35.0%
GTGATGACATATATTCAAGC+AGG - chr7_4:44710812-44710831 None:intergenic 35.0%
CCAAACAAACCATTCAGATT+GGG - chr7_4:44710896-44710915 None:intergenic 35.0%
TCCAAACAAACCATTCAGAT+TGG - chr7_4:44710897-44710916 None:intergenic 35.0%
GTTTGTTTGGAAGTCAATCT+GGG + chr7_4:44710906-44710925 Msa1156430:CDS 35.0%
TCAATGTGTTGTACCTTCTT+GGG - chr7_4:44711019-44711038 None:intergenic 35.0%
ATCAATGTGTTGTACCTTCT+TGG - chr7_4:44711020-44711039 None:intergenic 35.0%
! AGAAGGTACAACACATTGAT+TGG + chr7_4:44711020-44711039 Msa1156430:intron 35.0%
CAATAAGATTATCACGTTCC+TGG - chr7_4:44711305-44711324 None:intergenic 35.0%
!!! GTAGTATACTTTTGGAGTTC+TGG + chr7_4:44711375-44711394 Msa1156430:intron 35.0%
GAATTTCGTCATTCCTATTG+AGG + chr7_4:44711779-44711798 Msa1156430:CDS 35.0%
GTGAGAAGAAATCTAAAGAG+AGG - chr7_4:44710461-44710480 None:intergenic 35.0%
CTGCAAAAATCCTTTGTGTT+TGG - chr7_4:44710486-44710505 None:intergenic 35.0%
! CAAACACAAAGGATTTTTGC+AGG + chr7_4:44710484-44710503 Msa1156430:five_prime_UTR 35.0%
!! CTACTTGCTTTTCTCTCAAA+TGG + chr7_4:44710638-44710657 Msa1156430:exon 35.0%
GTGATGACATATATTCAAGC+AGG - chr7_4:44710812-44710831 None:intergenic 35.0%
CCAAACAAACCATTCAGATT+GGG - chr7_4:44710896-44710915 None:intergenic 35.0%
TCCAAACAAACCATTCAGAT+TGG - chr7_4:44710897-44710916 None:intergenic 35.0%
GTTTGTTTGGAAGTCAATCT+GGG + chr7_4:44710906-44710925 Msa1156430:CDS 35.0%
TCAATGTGTTGTACCTTCTT+GGG - chr7_4:44711019-44711038 None:intergenic 35.0%
ATCAATGTGTTGTACCTTCT+TGG - chr7_4:44711020-44711039 None:intergenic 35.0%
! AGAAGGTACAACACATTGAT+TGG + chr7_4:44711020-44711039 Msa1156430:intron 35.0%
CAATAAGATTATCACGTTCC+TGG - chr7_4:44711305-44711324 None:intergenic 35.0%
!!! GTAGTATACTTTTGGAGTTC+TGG + chr7_4:44711375-44711394 Msa1156430:intron 35.0%
GAATTTCGTCATTCCTATTG+AGG + chr7_4:44711779-44711798 Msa1156430:CDS 35.0%
CTTCTCACAACCAAACACAA+AGG + chr7_4:44710473-44710492 Msa1156430:five_prime_UTR 40.0%
CTATCCTTATCCGATTTCTG+TGG + chr7_4:44710507-44710526 Msa1156430:five_prime_UTR 40.0%
!! ATTTCTGGAGCCACAGAAAT+CGG - chr7_4:44710520-44710539 None:intergenic 40.0%
TGAAAACCAGCACTCATTTC+TGG - chr7_4:44710535-44710554 None:intergenic 40.0%
TATGCTATGTGGACTTATGG+AGG - chr7_4:44710571-44710590 None:intergenic 40.0%
! ATATATTCAAGCAGGAGCAC+AGG - chr7_4:44710804-44710823 None:intergenic 40.0%
!! CCCAATCTGAATGGTTTGTT+TGG + chr7_4:44710893-44710912 Msa1156430:CDS 40.0%
! GGTTTGTTTGGAAGTCAATC+TGG + chr7_4:44710905-44710924 Msa1156430:CDS 40.0%
GAACATGTCTATGAATTGGG+AGG + chr7_4:44710964-44710983 Msa1156430:CDS 40.0%
GAATTGGGAGGAAAAGATCA+TGG + chr7_4:44710976-44710995 Msa1156430:CDS 40.0%
CAATGTGTTGTACCTTCTTG+GGG - chr7_4:44711018-44711037 None:intergenic 40.0%
GAAATACCATCTTCGTATCG+AGG - chr7_4:44711260-44711279 None:intergenic 40.0%
TGAAATAGGCCGCTTGAAAA+TGG + chr7_4:44711331-44711350 Msa1156430:intron 40.0%
TGCAGCAAGATCAAATTTCC+AGG - chr7_4:44711412-44711431 None:intergenic 40.0%
CTTAGTTACATAGCCTGGTA+CGG + chr7_4:44711738-44711757 Msa1156430:intron 40.0%
AGAATCTCCTTCTCCTCAAT+AGG - chr7_4:44711795-44711814 None:intergenic 40.0%
CTTCTCACAACCAAACACAA+AGG + chr7_4:44710473-44710492 Msa1156430:five_prime_UTR 40.0%
CTATCCTTATCCGATTTCTG+TGG + chr7_4:44710507-44710526 Msa1156430:five_prime_UTR 40.0%
!! ATTTCTGGAGCCACAGAAAT+CGG - chr7_4:44710520-44710539 None:intergenic 40.0%
TGAAAACCAGCACTCATTTC+TGG - chr7_4:44710535-44710554 None:intergenic 40.0%
TATGCTATGTGGACTTATGG+AGG - chr7_4:44710571-44710590 None:intergenic 40.0%
! ATATATTCAAGCAGGAGCAC+AGG - chr7_4:44710804-44710823 None:intergenic 40.0%
!! CCCAATCTGAATGGTTTGTT+TGG + chr7_4:44710893-44710912 Msa1156430:CDS 40.0%
! GGTTTGTTTGGAAGTCAATC+TGG + chr7_4:44710905-44710924 Msa1156430:CDS 40.0%
GAACATGTCTATGAATTGGG+AGG + chr7_4:44710964-44710983 Msa1156430:CDS 40.0%
GAATTGGGAGGAAAAGATCA+TGG + chr7_4:44710976-44710995 Msa1156430:CDS 40.0%
CAATGTGTTGTACCTTCTTG+GGG - chr7_4:44711018-44711037 None:intergenic 40.0%
GAAATACCATCTTCGTATCG+AGG - chr7_4:44711260-44711279 None:intergenic 40.0%
TGAAATAGGCCGCTTGAAAA+TGG + chr7_4:44711331-44711350 Msa1156430:intron 40.0%
TGCAGCAAGATCAAATTTCC+AGG - chr7_4:44711412-44711431 None:intergenic 40.0%
CTTAGTTACATAGCCTGGTA+CGG + chr7_4:44711738-44711757 Msa1156430:intron 40.0%
AGAATCTCCTTCTCCTCAAT+AGG - chr7_4:44711795-44711814 None:intergenic 40.0%
TTTGTGAACGGCTCCTATGT+TGG - chr7_4:44710739-44710758 None:intergenic 45.0%
ATAGGAGCCGTTCACAAACA+AGG + chr7_4:44710741-44710760 Msa1156430:CDS 45.0%
GAGCACAGGAAACTACAACT+AGG - chr7_4:44710790-44710809 None:intergenic 45.0%
ACATCAGGACCCAATCTGAA+TGG + chr7_4:44710884-44710903 Msa1156430:intron 45.0%
TTACCTGCTTAACCCCAAGA+AGG + chr7_4:44711003-44711022 Msa1156430:CDS 45.0%
CGTCATTCCTATTGAGGAGA+AGG + chr7_4:44711785-44711804 Msa1156430:CDS 45.0%
CAACAAGAGTCCTTCTAACG+TGG + chr7_4:44711817-44711836 Msa1156430:CDS 45.0%
TTTGTGAACGGCTCCTATGT+TGG - chr7_4:44710739-44710758 None:intergenic 45.0%
ATAGGAGCCGTTCACAAACA+AGG + chr7_4:44710741-44710760 Msa1156430:CDS 45.0%
GAGCACAGGAAACTACAACT+AGG - chr7_4:44710790-44710809 None:intergenic 45.0%
ACATCAGGACCCAATCTGAA+TGG + chr7_4:44710884-44710903 Msa1156430:intron 45.0%
TTACCTGCTTAACCCCAAGA+AGG + chr7_4:44711003-44711022 Msa1156430:CDS 45.0%
CGTCATTCCTATTGAGGAGA+AGG + chr7_4:44711785-44711804 Msa1156430:CDS 45.0%
CAACAAGAGTCCTTCTAACG+TGG + chr7_4:44711817-44711836 Msa1156430:CDS 45.0%
GGAGCCACAGAAATCGGATA+AGG - chr7_4:44710514-44710533 None:intergenic 50.0%
TGAACTTCTCACCTGCAGCA+CGG - chr7_4:44710692-44710711 None:intergenic 50.0%
GCTCAATGCCACACCAACAT+AGG + chr7_4:44710723-44710742 Msa1156430:CDS 50.0%
GTACCTTCTTGGGGTTAAGC+AGG - chr7_4:44711009-44711028 None:intergenic 50.0%
GCACATCCTCGATACGAAGA+TGG + chr7_4:44711251-44711270 Msa1156430:intron 50.0%
ATTATCACGTTCCTGGCCCT+GGG - chr7_4:44711298-44711317 None:intergenic 50.0%
GGAGCCACAGAAATCGGATA+AGG - chr7_4:44710514-44710533 None:intergenic 50.0%
TGAACTTCTCACCTGCAGCA+CGG - chr7_4:44710692-44710711 None:intergenic 50.0%
GCTCAATGCCACACCAACAT+AGG + chr7_4:44710723-44710742 Msa1156430:CDS 50.0%
GTACCTTCTTGGGGTTAAGC+AGG - chr7_4:44711009-44711028 None:intergenic 50.0%
GCACATCCTCGATACGAAGA+TGG + chr7_4:44711251-44711270 Msa1156430:intron 50.0%
ATTATCACGTTCCTGGCCCT+GGG - chr7_4:44711298-44711317 None:intergenic 50.0%
GTGGCTCCAGAAATGAGTGC+TGG + chr7_4:44710526-44710545 Msa1156430:five_prime_UTR 55.0%
! GCACGGTTTCTGGGAAGTGT+CGG - chr7_4:44710675-44710694 None:intergenic 55.0%
TCACCTGCAGCACGGTTTCT+GGG - chr7_4:44710684-44710703 None:intergenic 55.0%
GTGCTGCAGGTGAGAAGTTC+AGG + chr7_4:44710691-44710710 Msa1156430:CDS 55.0%
GAACGGCTCCTATGTTGGTG+TGG - chr7_4:44710734-44710753 None:intergenic 55.0%
TCCTGCTCTTAAGAAGCCCC+AGG + chr7_4:44711278-44711297 Msa1156430:CDS 55.0%
CCTGCTCTTAAGAAGCCCCA+GGG + chr7_4:44711279-44711298 Msa1156430:CDS 55.0%
TTATCACGTTCCTGGCCCTG+GGG - chr7_4:44711297-44711316 None:intergenic 55.0%
GATTATCACGTTCCTGGCCC+TGG - chr7_4:44711299-44711318 None:intergenic 55.0%
ACCTTCTCGTACACCGTACC+AGG - chr7_4:44711754-44711773 None:intergenic 55.0%
GGTACGGTGTACGAGAAGGT+AGG + chr7_4:44711754-44711773 Msa1156430:CDS 55.0%
GTGGCTCCAGAAATGAGTGC+TGG + chr7_4:44710526-44710545 Msa1156430:five_prime_UTR 55.0%
! GCACGGTTTCTGGGAAGTGT+CGG - chr7_4:44710675-44710694 None:intergenic 55.0%
TCACCTGCAGCACGGTTTCT+GGG - chr7_4:44710684-44710703 None:intergenic 55.0%
GTGCTGCAGGTGAGAAGTTC+AGG + chr7_4:44710691-44710710 Msa1156430:CDS 55.0%
GAACGGCTCCTATGTTGGTG+TGG - chr7_4:44710734-44710753 None:intergenic 55.0%
TCCTGCTCTTAAGAAGCCCC+AGG + chr7_4:44711278-44711297 Msa1156430:CDS 55.0%
CCTGCTCTTAAGAAGCCCCA+GGG + chr7_4:44711279-44711298 Msa1156430:CDS 55.0%
TTATCACGTTCCTGGCCCTG+GGG - chr7_4:44711297-44711316 None:intergenic 55.0%
GATTATCACGTTCCTGGCCC+TGG - chr7_4:44711299-44711318 None:intergenic 55.0%
ACCTTCTCGTACACCGTACC+AGG - chr7_4:44711754-44711773 None:intergenic 55.0%
GGTACGGTGTACGAGAAGGT+AGG + chr7_4:44711754-44711773 Msa1156430:CDS 55.0%
CTTCCCAGAAACCGTGCTGC+AGG + chr7_4:44710678-44710697 Msa1156430:CDS 60.0%
CTCACCTGCAGCACGGTTTC+TGG - chr7_4:44710685-44710704 None:intergenic 60.0%
CCCTGGGGCTTCTTAAGAGC+AGG - chr7_4:44711282-44711301 None:intergenic 60.0%
TCTTAAGAAGCCCCAGGGCC+AGG + chr7_4:44711284-44711303 Msa1156430:CDS 60.0%
GCCTGGTACGGTGTACGAGA+AGG + chr7_4:44711750-44711769 Msa1156430:intron 60.0%
CTTCCCAGAAACCGTGCTGC+AGG + chr7_4:44710678-44710697 Msa1156430:CDS 60.0%
CTCACCTGCAGCACGGTTTC+TGG - chr7_4:44710685-44710704 None:intergenic 60.0%
CCCTGGGGCTTCTTAAGAGC+AGG - chr7_4:44711282-44711301 None:intergenic 60.0%
TCTTAAGAAGCCCCAGGGCC+AGG + chr7_4:44711284-44711303 Msa1156430:CDS 60.0%
GCCTGGTACGGTGTACGAGA+AGG + chr7_4:44711750-44711769 Msa1156430:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44710448 44711842 44710448 ID=Msa1156430;Name=Msa1156430
chr7_4 mRNA 44710448 44711842 44710448 ID=Msa1156430-mRNA-1;Parent=Msa1156430;Name=Msa1156430-mRNA-1;_AED=0.37;_eAED=0.37;_QI=209|0.66|0.5|1|1|1|4|0|129
chr7_4 exon 44710448 44710762 44710448 ID=Msa1156430-mRNA-1:exon:11566;Parent=Msa1156430-mRNA-1
chr7_4 exon 44710891 44711024 44710891 ID=Msa1156430-mRNA-1:exon:11567;Parent=Msa1156430-mRNA-1
chr7_4 exon 44711252 44711309 44711252 ID=Msa1156430-mRNA-1:exon:11568;Parent=Msa1156430-mRNA-1
chr7_4 exon 44711751 44711842 44711751 ID=Msa1156430-mRNA-1:exon:11569;Parent=Msa1156430-mRNA-1
chr7_4 five_prime_UTR 44710448 44710656 44710448 ID=Msa1156430-mRNA-1:five_prime_utr;Parent=Msa1156430-mRNA-1
chr7_4 CDS 44710657 44710762 44710657 ID=Msa1156430-mRNA-1:cds;Parent=Msa1156430-mRNA-1
chr7_4 CDS 44710891 44711024 44710891 ID=Msa1156430-mRNA-1:cds;Parent=Msa1156430-mRNA-1
chr7_4 CDS 44711252 44711309 44711252 ID=Msa1156430-mRNA-1:cds;Parent=Msa1156430-mRNA-1
chr7_4 CDS 44711751 44711842 44711751 ID=Msa1156430-mRNA-1:cds;Parent=Msa1156430-mRNA-1
Gene Sequence

>Msa1156430

ATGGAGTTGTTCGAACCGACACTTCCCAGAAACCGTGCTGCAGGTGAGAAGTTCAGGAGTGATTGCGCTCAATGCCACACCAACATAGGAGCCGTTCACAAACAAGGACCCAATCTGAATGGTTTGTTTGGAAGTCAATCTGGGACAACTCCTGAATATTCATATTGTGTTGCTAACAAGAACATGTCTATGAATTGGGAGGAAAAGATCATGGATGATTACCTGCTTAACCCCAAGAAGCACATCCTCGATACGAAGATGGTATTTCCTGCTCTTAAGAAGCCCCAGGGCCAGGAACCCTGGTACGGTGTACGAGAAGGTAGGCTGAATTTCGTCATTCCTATTGAGGAGAAGGAGATTCTAACAACAAGAGTCCTTCTAACGTGGTGA

Protein sequence

>Msa1156430

MELFEPTLPRNRAAGEKFRSDCAQCHTNIGAVHKQGPNLNGLFGSQSGTTPEYSYCVANKNMSMNWEEKIMDDYLLNPKKHILDTKMVFPALKKPQGQEPWYGVREGRLNFVIPIEEKEILTTRVLLTW*