AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382020 MtrunA17_Chr3g0136281 96.070 229 7 1 6 232 2 230 5.51e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382020 AT2G26340.1 56.306 222 88 5 20 232 32 253 8.32e-70 214
Msa0382020 AT2G26340.2 55.660 212 83 5 29 232 42 250 4.80e-65 202

Find 78 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTTCCATGTTGTTTA+AGG 0.063769 3_1:-84466483 Msa0382020:three_prime_UTR
TAGAGAAACATATTAACTTT+TGG 0.282146 3_1:-84466545 Msa0382020:three_prime_UTR
GAGATCGGCAGAGGGAAAAT+TGG 0.292643 3_1:+84468327 None:intergenic
ACAGTTCCAGATCAAGGATT+TGG 0.307790 3_1:-84468753 Msa0382020:CDS
TTCCATGTTGTTTAAGGACT+TGG 0.331753 3_1:-84466477 Msa0382020:three_prime_UTR
TCTCCGTTTCCATGTCTTCC+CGG 0.345652 3_1:+84466899 None:intergenic
ATTACCTGTCCAGAGCAATA+AGG 0.363168 3_1:+84467475 None:intergenic
TGCCGATCTCTACTTCGCTC+TGG 0.368041 3_1:-84468314 Msa0382020:CDS
AGATCGGCAGAGGGAAAATT+GGG 0.369482 3_1:+84468328 None:intergenic
TAAGAGTATTGTGTGGATAA+TGG 0.386551 3_1:-84470437 Msa0382020:exon
TACTGCTGAAGGAAGCATTA+TGG 0.402890 3_1:-84470124 Msa0382020:CDS
CAGTTCCAGATCAAGGATTT+GGG 0.422160 3_1:-84468752 Msa0382020:intron
CAGTTCTGCCCTTATTGCTC+TGG 0.425958 3_1:-84467484 Msa0382020:CDS
ATTGATTTAACGGAGGCATC+AGG 0.434244 3_1:+84467519 None:intergenic
AGACATGGAAACGGAGAACT+TGG 0.443335 3_1:-84466893 Msa0382020:CDS
TTACCTGTCCAGAGCAATAA+GGG 0.444801 3_1:+84467476 None:intergenic
ACCATCAGACGTGTTAAGTA+AGG 0.446609 3_1:-84466950 Msa0382020:CDS
GCCGATCTCTACTTCGCTCT+GGG 0.469537 3_1:-84468313 Msa0382020:CDS
GGATAAACACCATGCCAACT+TGG 0.470426 3_1:-84466686 Msa0382020:three_prime_UTR
TAGCTGATTCATACTTGGAC+CGG 0.479874 3_1:-84466918 Msa0382020:CDS
GGTTATAGCTGATTCATACT+TGG 0.482554 3_1:-84466923 Msa0382020:CDS
CATTACCCAAATCCTTGATC+TGG 0.483632 3_1:+84468747 None:intergenic
CGCCATCATGGAAGGAAGGC+AGG 0.488050 3_1:-84470312 Msa0382020:CDS
CATGGAAATAGAAGTTCTAA+AGG 0.488268 3_1:+84466493 None:intergenic
TTTGTATGTATTAAACATGA+AGG 0.490256 3_1:-84470468 Msa0382020:five_prime_UTR
GTGGGAGAGAACAAGAGAGA+TGG 0.492502 3_1:+84470279 None:intergenic
ATTCTGTTTCTGAAGGTCAC+TGG 0.496213 3_1:-84467583 Msa0382020:intron
CTGCCCTTATTGCTCTGGAC+AGG 0.496785 3_1:-84467479 Msa0382020:intron
GAAACGGAGAACTTGGACCC+TGG 0.503257 3_1:-84466886 Msa0382020:CDS
TTATGGACAAATATGTTAAG+AGG 0.506114 3_1:-84470107 Msa0382020:intron
CCCTTACTTAACACGTCTGA+TGG 0.507207 3_1:+84466949 None:intergenic
CGCCTGCCTTCCTTCCATGA+TGG 0.507969 3_1:+84470310 None:intergenic
TGGTTTCAGCCTCTTACAAA+CGG 0.513105 3_1:-84466974 Msa0382020:intron
CACGCAGAAGCAAGGAATCA+AGG 0.516697 3_1:+84467556 None:intergenic
CTGATGGTACCGTTTGTAAG+AGG 0.521003 3_1:+84466965 None:intergenic
AGCGAAGTAGAGATCGGCAG+AGG 0.521610 3_1:+84468318 None:intergenic
CCTCACACAGTTCCAGATCA+AGG 0.524145 3_1:-84468759 Msa0382020:CDS
GATTCTAATTGCTTTAAACC+AGG 0.530046 3_1:+84466868 None:intergenic
CGACTTGAACAACAATGCAA+TGG 0.531568 3_1:+84470355 None:intergenic
CATTGCATTGTTGTTCAAGT+CGG 0.538107 3_1:-84470354 Msa0382020:CDS
TATGCTTCTGACAGTGGCAA+TGG 0.552161 3_1:-84467744 Msa0382020:CDS
ATTCTAATTGCTTTAAACCA+GGG 0.552324 3_1:+84466869 None:intergenic
GTTAGGAAAGAGAATGAAGT+GGG 0.552640 3_1:+84470261 None:intergenic
GCTGTACTTGCTAACATGCG+CGG 0.553235 3_1:+84470381 None:intergenic
TAAACACCATGCCAACTTGG+TGG 0.553430 3_1:-84466683 Msa0382020:three_prime_UTR
CTGTACTTGCTAACATGCGC+GGG 0.554195 3_1:+84470382 None:intergenic
GCATTGTTGTTCAAGTCGGA+AGG 0.556474 3_1:-84470350 Msa0382020:CDS
ATGTTCCTAACTGCGTGAAC+CGG 0.556938 3_1:+84466404 None:intergenic
TTGATCTAAGTCCACCAAGT+TGG 0.564731 3_1:+84466672 None:intergenic
GAAGAGATAAGAGTATTGTG+TGG 0.564905 3_1:-84470444 Msa0382020:five_prime_UTR
TGCCTCCGTTAAATCAATGA+AGG 0.566338 3_1:-84467514 Msa0382020:CDS
TGAACTGTCGCCATCATGGA+AGG 0.567419 3_1:-84470320 Msa0382020:CDS
TCTTGAAGCACGCAGAAGCA+AGG 0.570877 3_1:+84467548 None:intergenic
GGACCGGGAAGACATGGAAA+CGG 0.574097 3_1:-84466902 Msa0382020:CDS
CTGTCGCCATCATGGAAGGA+AGG 0.576016 3_1:-84470316 Msa0382020:CDS
GCCCAGAGCGAAGTAGAGAT+CGG 0.581943 3_1:+84468312 None:intergenic
ATACTTGGACCGGGAAGACA+TGG 0.582312 3_1:-84466908 Msa0382020:CDS
AGCTGATTCATACTTGGACC+GGG 0.583181 3_1:-84466917 Msa0382020:CDS
AGACGTGTTAAGTAAGGGAA+AGG 0.583469 3_1:-84466944 Msa0382020:CDS
GTTACAGGTGCTACTGCTGA+AGG 0.587152 3_1:-84470135 Msa0382020:intron
CCTTGATCTGGAACTGTGTG+AGG 0.597626 3_1:+84468759 None:intergenic
CCATCAGACGTGTTAAGTAA+GGG 0.598697 3_1:-84466949 Msa0382020:CDS
AGTGTGAACTGTCGCCATCA+TGG 0.598878 3_1:-84470324 Msa0382020:CDS
GGATGCAGATGCAGATGCAA+AGG 0.601417 3_1:+84466718 None:intergenic
TTCCAAGTCCTTAAACAACA+TGG 0.601597 3_1:+84466475 None:intergenic
CTTAACAACAGTTATTACAC+CGG 0.603864 3_1:-84466423 Msa0382020:three_prime_UTR
GCGAAGTAGAGATCGGCAGA+GGG 0.604621 3_1:+84468319 None:intergenic
CTAAGTCCACCAAGTTGGCA+TGG 0.605907 3_1:+84466677 None:intergenic
GGTTAGGAAAGAGAATGAAG+TGG 0.616069 3_1:+84470260 None:intergenic
TTTACACGAAGAGATGCTGC+AGG 0.626649 3_1:+84468290 None:intergenic
TGCCTTCATTGATTTAACGG+AGG 0.631585 3_1:+84467512 None:intergenic
AACTGTGTGAGGATTACAGC+TGG 0.642570 3_1:+84468770 None:intergenic
GCGCAATATGCTTCTGACAG+TGG 0.644065 3_1:-84467750 Msa0382020:CDS
CTGTTTCTGAAGGTCACTGG+AGG 0.644931 3_1:-84467580 Msa0382020:intron
ATGGAAGGAAGGCAGGCGCG+TGG 0.646652 3_1:-84470305 Msa0382020:CDS
GCTGGTACGTAAGTCTCCAG+AGG 0.686740 3_1:+84468788 None:intergenic
ACAATGTTGATGATTGTCTG+AGG 0.713768 3_1:-84467707 Msa0382020:intron
GATCGGCAGAGGGAAAATTG+GGG 0.716033 3_1:+84468329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTAAACTTTA+GGG + chr3_1:84467116-84467135 None:intergenic 10.0%
!!! TATTTTCATAATAATTTTTG+CGG + chr3_1:84469219-84469238 None:intergenic 10.0%
!!! TTTTTTTTTCTTTCTGTTTA+CGG - chr3_1:84466674-84466693 Msa0382020:three_prime_UTR 15.0%
!!! CATTTTTTTTTGCTTAAATT+TGG - chr3_1:84466806-84466825 Msa0382020:three_prime_UTR 15.0%
!!! GTTTGATTTAATTAAACTTT+AGG + chr3_1:84467117-84467136 None:intergenic 15.0%
!! TTATTTGAATGATACTTTAT+TGG - chr3_1:84467234-84467253 Msa0382020:intron 15.0%
!! TCAAAAAAAAATTACGAAAT+AGG + chr3_1:84467321-84467340 None:intergenic 15.0%
!!! TATTTCGTAATTTTTTTTTG+AGG - chr3_1:84467320-84467339 Msa0382020:intron 15.0%
!! ATGATACAATTAGTATTAAA+CGG - chr3_1:84467615-84467634 Msa0382020:intron 15.0%
!!! ATTTTCATAATAATTTTTGC+GGG + chr3_1:84469218-84469237 None:intergenic 15.0%
!!! AAATGTTTTCACAAAATAAA+CGG + chr3_1:84469543-84469562 None:intergenic 15.0%
!! CAATAAAAATGTCAAAATAA+TGG + chr3_1:84469700-84469719 None:intergenic 15.0%
!! TTTGTATGTATTAAACATGA+AGG - chr3_1:84466416-84466435 Msa0382020:three_prime_UTR 20.0%
!!! AATAACATTGCATTCTAAAA+GGG + chr3_1:84467291-84467310 None:intergenic 20.0%
!!! TTGCTTTTTATAATTTGTAC+TGG - chr3_1:84467970-84467989 Msa0382020:intron 20.0%
!!! TGCTTTTTATAATTTGTACT+GGG - chr3_1:84467971-84467990 Msa0382020:intron 20.0%
!! TTACGTATTTATATCATACT+TGG - chr3_1:84468230-84468249 Msa0382020:intron 20.0%
!! TAAACATGAATTTAACAAGA+CGG - chr3_1:84468301-84468320 Msa0382020:CDS 20.0%
!! TATTACAGAAAAAACTTTAG+AGG - chr3_1:84468524-84468543 Msa0382020:intron 20.0%
!! ATTACAGAAAAAACTTTAGA+GGG - chr3_1:84468525-84468544 Msa0382020:intron 20.0%
!! AAGTGTATATATACTTAAGT+CGG - chr3_1:84468824-84468843 Msa0382020:intron 20.0%
!! AAAGTAAATGATGATAAACA+TGG + chr3_1:84469056-84469075 None:intergenic 20.0%
!!! GTTTTTCATAATCATAAAAC+TGG + chr3_1:84469263-84469282 None:intergenic 20.0%
!! CTTATTATGTACAAGAAAAA+GGG + chr3_1:84469459-84469478 None:intergenic 20.0%
!!! AATGTTTTCACAAAATAAAC+GGG + chr3_1:84469542-84469561 None:intergenic 20.0%
!!! AAAATGTTTTCGCAAAATAA+TGG - chr3_1:84469809-84469828 Msa0382020:intron 20.0%
!!! AAATGTTTTCGCAAAATAAT+GGG - chr3_1:84469810-84469829 Msa0382020:intron 20.0%
!! ATATTAAGAATATCATCAGA+TGG + chr3_1:84469885-84469904 None:intergenic 20.0%
!!! TGATATTCTTAATATGCTTT+TGG - chr3_1:84469890-84469909 Msa0382020:intron 20.0%
!!! TTAGATCAATGTTTTTTTTC+AGG - chr3_1:84470226-84470245 Msa0382020:intron 20.0%
!!! TAGAGAAACATATTAACTTT+TGG - chr3_1:84470339-84470358 Msa0382020:CDS 20.0%
! AAATGATTAAAAAGAGAGAG+AGG + chr3_1:84466656-84466675 None:intergenic 25.0%
!! TCTCTTTTATTCTATGTTAC+AGG - chr3_1:84466734-84466753 Msa0382020:three_prime_UTR 25.0%
! TTATGGACAAATATGTTAAG+AGG - chr3_1:84466777-84466796 Msa0382020:three_prime_UTR 25.0%
! AAATCACAAATCCAAAACAA+GGG + chr3_1:84466856-84466875 None:intergenic 25.0%
!! GAATCCAATTTGTTTAATCA+AGG - chr3_1:84466908-84466927 Msa0382020:CDS 25.0%
! TAAGCCTTGATTAAACAAAT+TGG + chr3_1:84466915-84466934 None:intergenic 25.0%
!!! AATTAAACTTTAGGGCTATT+TGG + chr3_1:84467108-84467127 None:intergenic 25.0%
!! GGAAAACTAAGATAAGTTTT+TGG + chr3_1:84467155-84467174 None:intergenic 25.0%
! CATTCAAATAATGTCTGAAA+TGG + chr3_1:84467225-84467244 None:intergenic 25.0%
! GAATAACATTGCATTCTAAA+AGG + chr3_1:84467292-84467311 None:intergenic 25.0%
! GATAAAGTGCAAACATATTA+GGG - chr3_1:84467357-84467376 Msa0382020:intron 25.0%
! TAATAACATGACAAAGAACA+AGG + chr3_1:84467385-84467404 None:intergenic 25.0%
! TTCTCAAAGAATGAACAAAA+AGG + chr3_1:84467428-84467447 None:intergenic 25.0%
!! ACATATAAGCTATACTTTTC+CGG - chr3_1:84467569-84467588 Msa0382020:CDS 25.0%
! AACCAAGACTTATTTCAATT+AGG - chr3_1:84467670-84467689 Msa0382020:intron 25.0%
! ACCAAGACTTATTTCAATTA+GGG - chr3_1:84467671-84467690 Msa0382020:intron 25.0%
! TTATCCACATCAAAAATACT+GGG + chr3_1:84467761-84467780 None:intergenic 25.0%
! ATTATCCACATCAAAAATAC+TGG + chr3_1:84467762-84467781 None:intergenic 25.0%
!!! TTTTTGTTATGATCACAAGT+AGG - chr3_1:84467800-84467819 Msa0382020:intron 25.0%
! AGCTACTCTAATTTAATTCA+AGG + chr3_1:84467943-84467962 None:intergenic 25.0%
! GAATCAGAATTATCATTCTT+TGG + chr3_1:84468040-84468059 None:intergenic 25.0%
!! TATTTGTAAACCTCTGATTT+TGG - chr3_1:84468205-84468224 Msa0382020:intron 25.0%
!! TATATCATACTTGGTTCTTA+TGG - chr3_1:84468239-84468258 Msa0382020:intron 25.0%
! AAACATGAATTTAACAAGAC+GGG - chr3_1:84468302-84468321 Msa0382020:CDS 25.0%
! TCTTCTTTCATTGGTAAATT+TGG - chr3_1:84468329-84468348 Msa0382020:CDS 25.0%
! TTCTGTAATAGTAGAAAGAA+AGG + chr3_1:84468514-84468533 None:intergenic 25.0%
!! GAAAAACTTTTAACATCCAA+AGG + chr3_1:84468686-84468705 None:intergenic 25.0%
!!! TCTTTTATTTTTCCTTCCAT+GGG + chr3_1:84468886-84468905 None:intergenic 25.0%
! ACGAATATCATATCAACAAT+GGG + chr3_1:84469011-84469030 None:intergenic 25.0%
! AACGAATATCATATCAACAA+TGG + chr3_1:84469012-84469031 None:intergenic 25.0%
!!! TTTTGCCTTCATTGATTTAA+CGG + chr3_1:84469378-84469397 None:intergenic 25.0%
! CCTTATTATGTACAAGAAAA+AGG + chr3_1:84469460-84469479 None:intergenic 25.0%
!! CCTTTTTCTTGTACATAATA+AGG - chr3_1:84469457-84469476 Msa0382020:intron 25.0%
!! ATTCTAATTGCTTTAAACCA+GGG + chr3_1:84470018-84470037 None:intergenic 25.0%
!! TTCTATTTCCATGTTGTTTA+AGG - chr3_1:84470401-84470420 Msa0382020:CDS 25.0%
!! TAAGAGTATTGTGTGGATAA+TGG - chr3_1:84466447-84466466 Msa0382020:three_prime_UTR 30.0%
TTCAATGTGCATAACAAAGA+AGG + chr3_1:84466712-84466731 None:intergenic 30.0%
!! TTTTTCATACACCCTTGTTT+TGG - chr3_1:84466842-84466861 Msa0382020:exon 30.0%
CAAATCACAAATCCAAAACA+AGG + chr3_1:84466857-84466876 None:intergenic 30.0%
AACAAATTGGATTCCAAACA+GGG + chr3_1:84466902-84466921 None:intergenic 30.0%
AAACAAATTGGATTCCAAAC+AGG + chr3_1:84466903-84466922 None:intergenic 30.0%
! GCTATTATTATTAGCTCTTC+CGG - chr3_1:84467028-84467047 Msa0382020:intron 30.0%
! TCAAATAATGTCTGAAATGG+AGG + chr3_1:84467222-84467241 None:intergenic 30.0%
GGATAAAGTGCAAACATATT+AGG - chr3_1:84467356-84467375 Msa0382020:intron 30.0%
AAAAAGACATGCATGATCAT+AGG - chr3_1:84467459-84467478 Msa0382020:intron 30.0%
!! TGTTGCATTTTGACATTAGT+TGG - chr3_1:84467708-84467727 Msa0382020:CDS 30.0%
!! GTTGCATTTTGACATTAGTT+GGG - chr3_1:84467709-84467728 Msa0382020:CDS 30.0%
!! TTGCATTTTGACATTAGTTG+GGG - chr3_1:84467710-84467729 Msa0382020:CDS 30.0%
!! ATTTCCCAGTATTTTTGATG+TGG - chr3_1:84467754-84467773 Msa0382020:CDS 30.0%
CTAAAGATATGATACAACGT+AGG + chr3_1:84467919-84467938 None:intergenic 30.0%
TCAGAATTATCATTCTTTGG+AGG + chr3_1:84468037-84468056 None:intergenic 30.0%
ATCAGAGGTTTACAAATATC+TGG + chr3_1:84468203-84468222 None:intergenic 30.0%
AAGAAGAACTCAGAAGTTAA+AGG + chr3_1:84468644-84468663 None:intergenic 30.0%
CAAAAAAATGAATTCCCTGT+TGG - chr3_1:84468723-84468742 Msa0382020:intron 30.0%
!!! CTCTTTTATTTTTCCTTCCA+TGG + chr3_1:84468887-84468906 None:intergenic 30.0%
!! TTTCTGAAATCTGCATGATA+TGG + chr3_1:84468933-84468952 None:intergenic 30.0%
! TCTATTGTTCTATGCTGTTT+GGG + chr3_1:84468959-84468978 None:intergenic 30.0%
ATCTATTGTTCTATGCTGTT+TGG + chr3_1:84468960-84468979 None:intergenic 30.0%
CCACTAATTAACTTTCATAC+AGG + chr3_1:84469093-84469112 None:intergenic 30.0%
CCTGTATGAAAGTTAATTAG+TGG - chr3_1:84469090-84469109 Msa0382020:intron 30.0%
AGAAACAGAATTCTTCAGTT+GGG + chr3_1:84469292-84469311 None:intergenic 30.0%
ATTATGTACAAGAAAAAGGG+AGG + chr3_1:84469456-84469475 None:intergenic 30.0%
! TTTGAAACGAATCATTGTGA+TGG - chr3_1:84469622-84469641 Msa0382020:intron 30.0%
! GATTCTAATTGCTTTAAACC+AGG + chr3_1:84470019-84470038 None:intergenic 30.0%
TGGTGTTTATCCAAAAAATG+AGG + chr3_1:84470190-84470209 None:intergenic 30.0%
!!! GATCAATGTTTTTTTTCAGG+AGG - chr3_1:84470229-84470248 Msa0382020:intron 30.0%
!!! GTTTTTTTTCAGGAGGAATA+TGG - chr3_1:84470236-84470255 Msa0382020:intron 30.0%
! CATGGAAATAGAAGTTCTAA+AGG + chr3_1:84470394-84470413 None:intergenic 30.0%
CTTAACAACAGTTATTACAC+CGG - chr3_1:84470461-84470480 Msa0382020:five_prime_UTR 30.0%
!! GAAGAGATAAGAGTATTGTG+TGG - chr3_1:84466440-84466459 Msa0382020:three_prime_UTR 35.0%
! CATTGCATTGTTGTTCAAGT+CGG - chr3_1:84466530-84466549 Msa0382020:three_prime_UTR 35.0%
GTTAGGAAAGAGAATGAAGT+GGG + chr3_1:84466626-84466645 None:intergenic 35.0%
AAAAAGAGAGAGAGGAGATA+CGG + chr3_1:84466648-84466667 None:intergenic 35.0%
GATTCCAAACAGGGAATAAT+GGG + chr3_1:84466893-84466912 None:intergenic 35.0%
CTTAAGTTTATCTACTTGCC+CGG + chr3_1:84467076-84467095 None:intergenic 35.0%
GTACTTGCCCATTAAGAATT+GGG - chr3_1:84467194-84467213 Msa0382020:intron 35.0%
AAAGTACGTCTACGCTATAT+AGG - chr3_1:84467259-84467278 Msa0382020:intron 35.0%
CATGCATGATCATAGGATAT+TGG - chr3_1:84467466-84467485 Msa0382020:intron 35.0%
CATGATCATAGGATATTGGT+GGG - chr3_1:84467470-84467489 Msa0382020:intron 35.0%
ATGATCATAGGATATTGGTG+GGG - chr3_1:84467471-84467490 Msa0382020:intron 35.0%
GTACATGATTCGTTTGATGA+TGG - chr3_1:84467496-84467515 Msa0382020:CDS 35.0%
GCCCTAATTGAAATAAGTCT+TGG + chr3_1:84467675-84467694 None:intergenic 35.0%
ATACGTAACACCAAAATCAG+AGG + chr3_1:84468218-84468237 None:intergenic 35.0%
! ACGGGTTTTTCTTCTTTCAT+TGG - chr3_1:84468320-84468339 Msa0382020:CDS 35.0%
TGCATTCGTTTATCAGAATG+AGG + chr3_1:84468355-84468374 None:intergenic 35.0%
AATATTCGAGCAGTAAGTAG+AGG - chr3_1:84468615-84468634 Msa0382020:intron 35.0%
! TTGGACTGACTCAATCAAAA+GGG + chr3_1:84468762-84468781 None:intergenic 35.0%
! TTTGGACTGACTCAATCAAA+AGG + chr3_1:84468763-84468782 None:intergenic 35.0%
AATGAAGACTCAGATTGCTT+TGG + chr3_1:84468781-84468800 None:intergenic 35.0%
CTGCATGATATGGAAGAAAT+TGG + chr3_1:84468923-84468942 None:intergenic 35.0%
!! GTGGTTCACAAACTTTTTCT+AGG - chr3_1:84469109-84469128 Msa0382020:intron 35.0%
!! ACAATGTTGATGATTGTCTG+AGG - chr3_1:84469177-84469196 Msa0382020:intron 35.0%
CAGAAACAGAATTCTTCAGT+TGG + chr3_1:84469293-84469312 None:intergenic 35.0%
!! CTGAAGAATTCTGTTTCTGA+AGG - chr3_1:84469294-84469313 Msa0382020:intron 35.0%
GGTAATTTGAATTCGTTGTG+TGG - chr3_1:84469426-84469445 Msa0382020:intron 35.0%
GATTAAGAGAGATTCTGCAA+AGG + chr3_1:84469491-84469510 None:intergenic 35.0%
TCTCTTAATCTTACAGCCTT+TGG - chr3_1:84469501-84469520 Msa0382020:intron 35.0%
! AACGAATCATTGTGATGGAA+AGG - chr3_1:84469627-84469646 Msa0382020:intron 35.0%
AAGGAGATGAAATGTTAGCT+AGG - chr3_1:84469646-84469665 Msa0382020:intron 35.0%
AGGAGATGAAATGTTAGCTA+GGG - chr3_1:84469647-84469666 Msa0382020:intron 35.0%
GCTGTGTGTAAACTGTAAAT+TGG + chr3_1:84469861-84469880 None:intergenic 35.0%
! GGTTATAGCTGATTCATACT+TGG - chr3_1:84469961-84469980 Msa0382020:intron 35.0%
!!! CTCGTACTTTTGATTTCTGT+TGG + chr3_1:84470369-84470388 None:intergenic 35.0%
! TTCCATGTTGTTTAAGGACT+TGG - chr3_1:84470407-84470426 Msa0382020:CDS 35.0%
TTCCAAGTCCTTAAACAACA+TGG + chr3_1:84470412-84470431 None:intergenic 35.0%
CGACTTGAACAACAATGCAA+TGG + chr3_1:84466532-84466551 None:intergenic 40.0%
GGTTAGGAAAGAGAATGAAG+TGG + chr3_1:84466627-84466646 None:intergenic 40.0%
!! TACTGCTGAAGGAAGCATTA+TGG - chr3_1:84466760-84466779 Msa0382020:three_prime_UTR 40.0%
AGTTCCCATTATTCCCTGTT+TGG - chr3_1:84466886-84466905 Msa0382020:CDS 40.0%
GGATTCCAAACAGGGAATAA+TGG + chr3_1:84466894-84466913 None:intergenic 40.0%
!! CTTATCTTAGTTTTCCCCAG+TGG - chr3_1:84467159-84467178 Msa0382020:intron 40.0%
GGTACTTGCCCATTAAGAAT+TGG - chr3_1:84467193-84467212 Msa0382020:intron 40.0%
!! GGAGGTACCCAATTCTTAAT+GGG + chr3_1:84467204-84467223 None:intergenic 40.0%
!! TGGAGGTACCCAATTCTTAA+TGG + chr3_1:84467205-84467224 None:intergenic 40.0%
!!! TTTTTGAGGTGCTAGCTTGA+AGG - chr3_1:84467334-84467353 Msa0382020:intron 40.0%
!!! TTTTGAGGTGCTAGCTTGAA+GGG - chr3_1:84467335-84467354 Msa0382020:intron 40.0%
GCATGATCATAGGATATTGG+TGG - chr3_1:84467469-84467488 Msa0382020:intron 40.0%
!! CATGATTCGTTTGATGATGG+TGG - chr3_1:84467499-84467518 Msa0382020:CDS 40.0%
! TTTTCCGGATGATGAGAACA+CGG - chr3_1:84467584-84467603 Msa0382020:intron 40.0%
TAGAAAAAAGCTAGAGCCTC+TGG - chr3_1:84468080-84468099 Msa0382020:intron 40.0%
ACAGTTCCAGATCAAGGATT+TGG - chr3_1:84468131-84468150 Msa0382020:intron 40.0%
CAGTTCCAGATCAAGGATTT+GGG - chr3_1:84468132-84468151 Msa0382020:intron 40.0%
CATTACCCAAATCCTTGATC+TGG + chr3_1:84468140-84468159 None:intergenic 40.0%
ATCTAGCATGACAGAGAAAG+CGG + chr3_1:84468178-84468197 None:intergenic 40.0%
CTAGTTGTGAAGAGTGAACA+TGG + chr3_1:84468423-84468442 None:intergenic 40.0%
CATGTTCACTCTTCACAACT+AGG - chr3_1:84468421-84468440 Msa0382020:intron 40.0%
TTCACAACTAGGATTGCTCT+AGG - chr3_1:84468432-84468451 Msa0382020:intron 40.0%
TCTCGCATCTCTTATACCTT+TGG - chr3_1:84468667-84468686 Msa0382020:intron 40.0%
! ACTGACTCAATCAAAAGGGA+GGG + chr3_1:84468758-84468777 None:intergenic 40.0%
!!! CTCAAGATTTTCAAGTCCCA+TGG - chr3_1:84468867-84468886 Msa0382020:intron 40.0%
!!! AGATTTTCAAGTCCCATGGA+AGG - chr3_1:84468871-84468890 Msa0382020:intron 40.0%
!! ATTCTGTTTCTGAAGGTCAC+TGG - chr3_1:84469301-84469320 Msa0382020:intron 40.0%
!! ATTGATTTAACGGAGGCATC+AGG + chr3_1:84469368-84469387 None:intergenic 40.0%
TGCCTCCGTTAAATCAATGA+AGG - chr3_1:84469370-84469389 Msa0382020:intron 40.0%
!! TGCCTTCATTGATTTAACGG+AGG + chr3_1:84469375-84469394 None:intergenic 40.0%
TTACCTGTCCAGAGCAATAA+GGG + chr3_1:84469411-84469430 None:intergenic 40.0%
ATTACCTGTCCAGAGCAATA+AGG + chr3_1:84469412-84469431 None:intergenic 40.0%
TGGTTTCAGCCTCTTACAAA+CGG - chr3_1:84469910-84469929 Msa0382020:intron 40.0%
ACCATCAGACGTGTTAAGTA+AGG - chr3_1:84469934-84469953 Msa0382020:intron 40.0%
CCATCAGACGTGTTAAGTAA+GGG - chr3_1:84469935-84469954 Msa0382020:intron 40.0%
AGACGTGTTAAGTAAGGGAA+AGG - chr3_1:84469940-84469959 Msa0382020:intron 40.0%
! TAGCTGATTCATACTTGGAC+CGG - chr3_1:84469966-84469985 Msa0382020:intron 40.0%
!!! GCATCTGCATCCTCATTTTT+TGG - chr3_1:84470177-84470196 Msa0382020:intron 40.0%
TTGATCTAAGTCCACCAAGT+TGG + chr3_1:84470215-84470234 None:intergenic 40.0%
! GCATTGTTGTTCAAGTCGGA+AGG - chr3_1:84466534-84466553 Msa0382020:three_prime_UTR 45.0%
CTAACAGTCTCTCCAGTAAC+CGG - chr3_1:84467054-84467073 Msa0382020:intron 45.0%
TAACAGTCTCTCCAGTAACC+GGG - chr3_1:84467055-84467074 Msa0382020:intron 45.0%
TTATCTACTTGCCCGGTTAC+TGG + chr3_1:84467069-84467088 None:intergenic 45.0%
!! ATCTTAGTTTTCCCCAGTGG+TGG - chr3_1:84467162-84467181 Msa0382020:intron 45.0%
TACCATTAAGCACCACCACT+GGG + chr3_1:84467177-84467196 None:intergenic 45.0%
ATCTCCGTGTTCTCATCATC+CGG + chr3_1:84467591-84467610 None:intergenic 45.0%
AACTGTGTGAGGATTACAGC+TGG + chr3_1:84468117-84468136 None:intergenic 45.0%
GAAAGCGGTTCACGAAAAAC+TGG + chr3_1:84468163-84468182 None:intergenic 45.0%
AGATCGGCAGAGGGAAAATT+GGG + chr3_1:84468559-84468578 None:intergenic 45.0%
TTTACACGAAGAGATGCTGC+AGG + chr3_1:84468597-84468616 None:intergenic 45.0%
TGACTCAATCAAAAGGGAGG+GGG + chr3_1:84468756-84468775 None:intergenic 45.0%
CTGACTCAATCAAAAGGGAG+GGG + chr3_1:84468757-84468776 None:intergenic 45.0%
! GACTGACTCAATCAAAAGGG+AGG + chr3_1:84468759-84468778 None:intergenic 45.0%
TATGCTTCTGACAGTGGCAA+TGG - chr3_1:84469140-84469159 Msa0382020:intron 45.0%
TAAACGGGACCTTAGCTAGT+CGG + chr3_1:84469527-84469546 None:intergenic 45.0%
CTGATGGTACCGTTTGTAAG+AGG + chr3_1:84469922-84469941 None:intergenic 45.0%
CCCTTACTTAACACGTCTGA+TGG + chr3_1:84469938-84469957 None:intergenic 45.0%
! AGCTGATTCATACTTGGACC+GGG - chr3_1:84469967-84469986 Msa0382020:intron 45.0%
AGACATGGAAACGGAGAACT+TGG - chr3_1:84469991-84470010 Msa0382020:intron 45.0%
GGATAAACACCATGCCAACT+TGG - chr3_1:84470198-84470217 Msa0382020:intron 45.0%
TAAACACCATGCCAACTTGG+TGG - chr3_1:84470201-84470220 Msa0382020:intron 45.0%
! CTGTACTTGCTAACATGCGC+GGG + chr3_1:84466505-84466524 None:intergenic 50.0%
! GCTGTACTTGCTAACATGCG+CGG + chr3_1:84466506-84466525 None:intergenic 50.0%
AGTGTGAACTGTCGCCATCA+TGG - chr3_1:84466560-84466579 Msa0382020:three_prime_UTR 50.0%
TGAACTGTCGCCATCATGGA+AGG - chr3_1:84466564-84466583 Msa0382020:three_prime_UTR 50.0%
GTGGGAGAGAACAAGAGAGA+TGG + chr3_1:84466608-84466627 None:intergenic 50.0%
GAGAGAGAGGAGATACGGTT+AGG + chr3_1:84466643-84466662 None:intergenic 50.0%
!! GTTACAGGTGCTACTGCTGA+AGG - chr3_1:84466749-84466768 Msa0382020:three_prime_UTR 50.0%
CTGGAGAGACTGTTAGGAAC+CGG + chr3_1:84467050-84467069 None:intergenic 50.0%
CGGTTACTGGAGAGACTGTT+AGG + chr3_1:84467056-84467075 None:intergenic 50.0%
ACCATTAAGCACCACCACTG+GGG + chr3_1:84467176-84467195 None:intergenic 50.0%
GTACCATTAAGCACCACCAC+TGG + chr3_1:84467178-84467197 None:intergenic 50.0%
! CCTTGATCTGGAACTGTGTG+AGG + chr3_1:84468128-84468147 None:intergenic 50.0%
CCTCACACAGTTCCAGATCA+AGG - chr3_1:84468125-84468144 Msa0382020:intron 50.0%
GATCGGCAGAGGGAAAATTG+GGG + chr3_1:84468558-84468577 None:intergenic 50.0%
GAGATCGGCAGAGGGAAAAT+TGG + chr3_1:84468560-84468579 None:intergenic 50.0%
GAGGGGGAAAACTTCCAACA+GGG + chr3_1:84468740-84468759 None:intergenic 50.0%
GCGCAATATGCTTCTGACAG+TGG - chr3_1:84469134-84469153 Msa0382020:intron 50.0%
!! CTGTTTCTGAAGGTCACTGG+AGG - chr3_1:84469304-84469323 Msa0382020:intron 50.0%
CACGCAGAAGCAAGGAATCA+AGG + chr3_1:84469331-84469350 None:intergenic 50.0%
TCTTGAAGCACGCAGAAGCA+AGG + chr3_1:84469339-84469358 None:intergenic 50.0%
CAGTTCTGCCCTTATTGCTC+TGG - chr3_1:84469400-84469419 Msa0382020:intron 50.0%
ATACTTGGACCGGGAAGACA+TGG - chr3_1:84469976-84469995 Msa0382020:intron 50.0%
TCTCCGTTTCCATGTCTTCC+CGG + chr3_1:84469988-84470007 None:intergenic 50.0%
GGATGCAGATGCAGATGCAA+AGG + chr3_1:84470169-84470188 None:intergenic 50.0%
! CTAAGTCCACCAAGTTGGCA+TGG + chr3_1:84470210-84470229 None:intergenic 50.0%
CTGTCGCCATCATGGAAGGA+AGG - chr3_1:84466568-84466587 Msa0382020:intron 55.0%
! TCCCCAGTGGTGGTGCTTAA+TGG - chr3_1:84467172-84467191 Msa0382020:intron 55.0%
GCTGGTACGTAAGTCTCCAG+AGG + chr3_1:84468099-84468118 None:intergenic 55.0%
GCGAAGTAGAGATCGGCAGA+GGG + chr3_1:84468568-84468587 None:intergenic 55.0%
AGCGAAGTAGAGATCGGCAG+AGG + chr3_1:84468569-84468588 None:intergenic 55.0%
TGCCGATCTCTACTTCGCTC+TGG - chr3_1:84468570-84468589 Msa0382020:intron 55.0%
GCCGATCTCTACTTCGCTCT+GGG - chr3_1:84468571-84468590 Msa0382020:intron 55.0%
GCCCAGAGCGAAGTAGAGAT+CGG + chr3_1:84468575-84468594 None:intergenic 55.0%
GGAGGGGGAAAACTTCCAAC+AGG + chr3_1:84468741-84468760 None:intergenic 55.0%
! CTGCCCTTATTGCTCTGGAC+AGG - chr3_1:84469405-84469424 Msa0382020:intron 55.0%
! AGCCTTTGGCCGACTAGCTA+AGG - chr3_1:84469515-84469534 Msa0382020:intron 55.0%
GACCTTAGCTAGTCGGCCAA+AGG + chr3_1:84469520-84469539 None:intergenic 55.0%
GGACCGGGAAGACATGGAAA+CGG - chr3_1:84469982-84470001 Msa0382020:intron 55.0%
GAAACGGAGAACTTGGACCC+TGG - chr3_1:84469998-84470017 Msa0382020:intron 55.0%
CGCCATCATGGAAGGAAGGC+AGG - chr3_1:84466572-84466591 Msa0382020:intron 60.0%
CGCCTGCCTTCCTTCCATGA+TGG + chr3_1:84466577-84466596 None:intergenic 60.0%
ATGGAAGGAAGGCAGGCGCG+TGG - chr3_1:84466579-84466598 Msa0382020:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84466416 84470490 84466416 ID=Msa0382020;Name=Msa0382020
chr3_1 mRNA 84466416 84470490 84466416 ID=Msa0382020-mRNA-1;Parent=Msa0382020;Name=Msa0382020-mRNA-1;_AED=0.16;_eAED=0.16;_QI=50|1|1|1|0.85|0.75|8|390|232
chr3_1 exon 84466416 84466584 84466416 ID=Msa0382020-mRNA-1:exon:21941;Parent=Msa0382020-mRNA-1
chr3_1 exon 84466637 84466987 84466637 ID=Msa0382020-mRNA-1:exon:21940;Parent=Msa0382020-mRNA-1
chr3_1 exon 84467480 84467590 84467480 ID=Msa0382020-mRNA-1:exon:21939;Parent=Msa0382020-mRNA-1
chr3_1 exon 84467708 84467775 84467708 ID=Msa0382020-mRNA-1:exon:21938;Parent=Msa0382020-mRNA-1
chr3_1 exon 84468280 84468374 84468280 ID=Msa0382020-mRNA-1:exon:21937;Parent=Msa0382020-mRNA-1
chr3_1 exon 84468753 84468823 84468753 ID=Msa0382020-mRNA-1:exon:21936;Parent=Msa0382020-mRNA-1
chr3_1 exon 84470108 84470150 84470108 ID=Msa0382020-mRNA-1:exon:21935;Parent=Msa0382020-mRNA-1
chr3_1 exon 84470260 84470490 84470260 ID=Msa0382020-mRNA-1:exon:21934;Parent=Msa0382020-mRNA-1
chr3_1 five_prime_UTR 84470441 84470490 84470441 ID=Msa0382020-mRNA-1:five_prime_utr;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84470260 84470440 84470260 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84470108 84470150 84470108 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84468753 84468823 84468753 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84468280 84468374 84468280 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84467708 84467775 84467708 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84467480 84467590 84467480 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 CDS 84466858 84466987 84466858 ID=Msa0382020-mRNA-1:cds;Parent=Msa0382020-mRNA-1
chr3_1 three_prime_UTR 84466637 84466857 84466637 ID=Msa0382020-mRNA-1:three_prime_utr;Parent=Msa0382020-mRNA-1
chr3_1 three_prime_UTR 84466416 84466584 84466416 ID=Msa0382020-mRNA-1:three_prime_utr;Parent=Msa0382020-mRNA-1
Gene Sequence

>Msa0382020

ATGGCATCATCATCATCATCATCATCAGTTGTGAGTCCCGCGCATGTTAGCAAGTACAGCAAACCATTGCATTGTTGTTCAAGTCGGAAGGTGAAGTGTGAACTGTCGCCATCATGGAAGGAAGGCAGGCGCGTGGTCTCCATCTCTCTTGTTCTCTCCCACTTCATTCTCTTTCCTAACCGTGCTACTGCTGAAGGAAGCATTATGGACAAATATGTTAAGAGAAAAAAGCTAGAGCCTCTGGAGACTTACGTACCAGCTGTAATCCTCACACAGTTCCAGATCAAGGATTTGGAAAAAACTTTAGAGGGTAATGAGCCCCAATTTTCCCTCTGCCGATCTCTACTTCGCTCTGGGCCTGCAGCATCTCTTCGTGTAAATATTCGAGCAGTCGCGCAATATGCTTCTGACAGTGGCAATGGTAAAACTGCATTGAACAATGTTGATGATTGTCTGAGGTCACTGGAGGACCTTGATTCCTTGCTTCTGCGTGCTTCAAGAAATGATCCTGATGCCTCCGTTAAATCAATGAAGGCAAAAGTCAGTTCTGCCCTTATTGCTCTGGACAGCCTCTTACAAACGGTACCATCAGACGTGTTAAGTAAGGGAAAGGTTATAGCTGATTCATACTTGGACCGGGAAGACATGGAAACGGAGAACTTGGACCCTGGTTTAAAGCAATTAGAATCAATACTGTGA

Protein sequence

>Msa0382020

MASSSSSSSVVSPAHVSKYSKPLHCCSSRKVKCELSPSWKEGRRVVSISLVLSHFILFPNRATAEGSIMDKYVKRKKLEPLETYVPAVILTQFQIKDLEKTLEGNEPQFSLCRSLLRSGPAASLRVNIRAVAQYASDSGNGKTALNNVDDCLRSLEDLDSLLLRASRNDPDASVKSMKAKVSSALIALDSLLQTVPSDVLSKGKVIADSYLDREDMETENLDPGLKQLESIL*