AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1338600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338600 MtrunA17_Chr7g0260541 93.956 182 10 1 1 182 1 181 3.28e-107 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338600 AT3G51510.1 66.165 133 39 2 50 182 54 180 7.28e-53 167

Find 71 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAGCATGTTAAGTATT+TGG 0.200733 tig0002300:-11479 None:intergenic
TTGATTCACATACTCAAATA+TGG 0.236469 tig0002300:-10486 None:intergenic
TCACAACCCACAACCTTTCT+AGG 0.242009 tig0002300:+10115 Msa1338600:CDS
AAGAAGAAGTGGGTTTGTTT+TGG 0.258797 tig0002300:-10306 None:intergenic
AACAAACCCACTTCTTCTTC+TGG 0.278305 tig0002300:+10310 Msa1338600:CDS
TCATTCTCCTTTATTTGATT+AGG 0.315558 tig0002300:+11679 Msa1338600:three_prime_UTR
TCAAATAAAGGAGAATGATA+TGG 0.328741 tig0002300:-11674 None:intergenic
ACTTGACTCTGCTGAGCCTT+TGG 0.330126 tig0002300:-10209 None:intergenic
TGTAGATTGTAACACAAGTT+TGG 0.354866 tig0002300:-10007 None:intergenic
TAACTAACATGGTGCACATA+TGG 0.381575 tig0002300:+11519 Msa1338600:three_prime_UTR
GATGAGTCCTAATCAAATAA+AGG 0.392051 tig0002300:-11686 None:intergenic
ATGAATCATAACTTGATGTT+AGG 0.393492 tig0002300:-11708 None:intergenic
GGAGGAGGTTCTTCTGAGTC+AGG 0.395874 tig0002300:-10265 None:intergenic
ATCTATCTATTTGCTGGTGT+TGG 0.397743 tig0002300:+11389 Msa1338600:three_prime_UTR
TTGTTCCTCAGCTTCCTTGT+TGG 0.401097 tig0002300:-11172 None:intergenic
TAATGGTCGGTTCATGTATT+GGG 0.414503 tig0002300:+11618 Msa1338600:three_prime_UTR
ATTTGCTCGATGAAATTGTA+AGG 0.419043 tig0002300:+11353 Msa1338600:three_prime_UTR
AAGTCGATCTATCTATTTGC+TGG 0.424716 tig0002300:+11383 Msa1338600:three_prime_UTR
ATAATGGTCGGTTCATGTAT+TGG 0.427112 tig0002300:+11617 Msa1338600:three_prime_UTR
GTGAATCAAAAGCCAGTGTT+TGG 0.428557 tig0002300:+10500 Msa1338600:CDS
ATGTTAGTTAAAAGAGTTAA+GGG 0.430678 tig0002300:-11506 None:intergenic
CATGTTAGTTAAAAGAGTTA+AGG 0.438664 tig0002300:-11507 None:intergenic
TATATTATTGACATTAAAGT+AGG 0.450227 tig0002300:+11552 Msa1338600:three_prime_UTR
TTGAACCATCTGCAATTCCT+TGG 0.454677 tig0002300:+11584 Msa1338600:three_prime_UTR
CATTGTCAAGGCAGTTAACA+TGG 0.463080 tig0002300:+11441 Msa1338600:three_prime_UTR
CTTTGTCCGCGTAAGTCATA+CGG 0.468893 tig0002300:+11241 Msa1338600:three_prime_UTR
GCAAGTAAATAAACATAAAA+CGG 0.478470 tig0002300:-10349 None:intergenic
GGGAATGCCTAGAAAGGTTG+TGG 0.484085 tig0002300:-10122 None:intergenic
CCCACTTCTTCTTCTGGACA+AGG 0.489189 tig0002300:+10316 Msa1338600:CDS
ATTGACATTAAAGTAGGTAG+TGG 0.504084 tig0002300:+11558 Msa1338600:three_prime_UTR
CATGAACCGACCATTATGTA+AGG 0.510076 tig0002300:-11611 None:intergenic
ACTCAGAAGAACCTCCTCCA+TGG 0.530018 tig0002300:+10269 Msa1338600:CDS
ACACCATCCATGGCAGTAGC+AGG 0.533148 tig0002300:+10031 Msa1338600:exon
CTTCACCGGTGTTCCCACTT+CGG 0.535339 tig0002300:+10574 Msa1338600:CDS
GGGTCTTCGAGATGAACTCC+TGG 0.548909 tig0002300:+11638 Msa1338600:three_prime_UTR
ACATAGGGGAATGCCTAGAA+AGG 0.551745 tig0002300:-10128 None:intergenic
AGTTGACAGTGATGAGGAGA+AGG 0.557021 tig0002300:-10065 None:intergenic
CTCAGAAGAACCTCCTCCAT+GGG 0.557982 tig0002300:+10270 Msa1338600:CDS
GTCTGTTCAAGCAGCCAACA+AGG 0.565704 tig0002300:+11158 Msa1338600:CDS
GTTAATGTGCTTCATTGTCA+AGG 0.570750 tig0002300:+11429 Msa1338600:three_prime_UTR
CTTCCTGCTACTGCCATGGA+TGG 0.574251 tig0002300:-10034 None:intergenic
CGAAGTGGGAACACCGGTGA+AGG 0.578885 tig0002300:-10573 None:intergenic
CAATCTACAAACACCATCCA+TGG 0.578967 tig0002300:+10021 Msa1338600:exon
GGAATGCCTAGAAAGGTTGT+GGG 0.583378 tig0002300:-10121 None:intergenic
GATGAAAGTAATTACCGAAG+TGG 0.584458 tig0002300:-10588 None:intergenic
ATGAAAGTAATTACCGAAGT+GGG 0.587934 tig0002300:-10587 None:intergenic
TTAACAGTGGCAGTGACCAA+AGG 0.589461 tig0002300:+10193 Msa1338600:CDS
GAGTCAGGCTTAGCCCATGA+AGG 0.590685 tig0002300:-10250 None:intergenic
CTTGAACAGACTTGAACCAC+AGG 0.591556 tig0002300:-11146 None:intergenic
ATTCAATTCAGGCCTTCCTG+TGG 0.597191 tig0002300:+11130 Msa1338600:intron
TATGGATCAAAATCTAGTCC+AGG 0.597749 tig0002300:-11656 None:intergenic
TCCTTGTCCAGAAGAAGAAG+TGG 0.598183 tig0002300:-10317 None:intergenic
AGCTGAGGAACAAGACAAGA+GGG 0.603125 tig0002300:+11182 Msa1338600:CDS
AGCACTTCCTGCTACTGCCA+TGG 0.605704 tig0002300:-10038 None:intergenic
GAAAACCAAGGAATTGCAGA+TGG 0.607393 tig0002300:-11589 None:intergenic
TTTGCTCGATGAAATTGTAA+GGG 0.608182 tig0002300:+11354 Msa1338600:three_prime_UTR
AGCAGCCAACAAGGAAGCTG+AGG 0.612169 tig0002300:+11167 Msa1338600:CDS
CCTTGTCCAGAAGAAGAAGT+GGG 0.612408 tig0002300:-10316 None:intergenic
CTAACATGGTGCACATATGG+TGG 0.613003 tig0002300:+11522 Msa1338600:three_prime_UTR
TTGTGGGTTGTGATGCATGT+CGG 0.613731 tig0002300:-10105 None:intergenic
CAATTTCCGTATGACTTACG+CGG 0.615627 tig0002300:-11247 None:intergenic
GAGCTCAAAACTCCAAACAC+TGG 0.621937 tig0002300:-10512 None:intergenic
ATTGTCAAGGCAGTTAACAT+GGG 0.627506 tig0002300:+11442 Msa1338600:three_prime_UTR
AACAGACTTGAACCACAGGA+AGG 0.628717 tig0002300:-11142 None:intergenic
AAGCTGAGGAACAAGACAAG+AGG 0.642384 tig0002300:+11181 Msa1338600:CDS
GTGTTGGTTAACAGAGTAAG+CGG 0.656096 tig0002300:+11405 Msa1338600:three_prime_UTR
GGCAATTGCAGTGATAGCAG+AGG 0.656195 tig0002300:-10371 None:intergenic
GAGGAACAAGACAAGAGGGA+TGG 0.660419 tig0002300:+11186 Msa1338600:CDS
AATTACCGAAGTGGGAACAC+CGG 0.661017 tig0002300:-10579 None:intergenic
ACATACAGTTGACAGTGATG+AGG 0.672865 tig0002300:-10071 None:intergenic
CCATTATGTAAGGAAAACCA+AGG 0.725359 tig0002300:-11601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTGAAAATATTTTA+TGG + tig0002300:10776-10795 Msa1338600:intron 10.0%
!!! AATAAGTTGAAAATATTTTA+TGG + tig0002300:10776-10795 Msa1338600:intron 10.0%
!! TATATTATTGACATTAAAGT+AGG + tig0002300:11552-11571 Msa1338600:three_prime_UTR 15.0%
!! TATATTATTGACATTAAAGT+AGG + tig0002300:11552-11571 Msa1338600:three_prime_UTR 15.0%
!! GCAAGTAAATAAACATAAAA+CGG - tig0002300:10352-10371 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG - tig0002300:10615-10634 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG + tig0002300:10683-10702 Msa1338600:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG + tig0002300:10744-10763 Msa1338600:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG + tig0002300:10912-10931 Msa1338600:intron 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG + tig0002300:10913-10932 Msa1338600:intron 20.0%
!! AAATAGTAGAATGAAGAATA+TGG - tig0002300:10974-10993 None:intergenic 20.0%
!!! TCAATTTATTTCTCTTAGTT+GGG + tig0002300:11005-11024 Msa1338600:intron 20.0%
!! ATGTTAGTTAAAAGAGTTAA+GGG - tig0002300:11509-11528 None:intergenic 20.0%
!! GCAAGTAAATAAACATAAAA+CGG - tig0002300:10352-10371 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG - tig0002300:10615-10634 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG + tig0002300:10683-10702 Msa1338600:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG + tig0002300:10744-10763 Msa1338600:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG + tig0002300:10912-10931 Msa1338600:intron 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG + tig0002300:10913-10932 Msa1338600:intron 20.0%
!! AAATAGTAGAATGAAGAATA+TGG - tig0002300:10974-10993 None:intergenic 20.0%
!!! TCAATTTATTTCTCTTAGTT+GGG + tig0002300:11005-11024 Msa1338600:intron 20.0%
!! ATGTTAGTTAAAAGAGTTAA+GGG - tig0002300:11509-11528 None:intergenic 20.0%
!! AAGAGATTAGTTATTTACAG+CGG - tig0002300:10395-10414 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG + tig0002300:10461-10480 Msa1338600:intron 25.0%
! TTGATTCACATACTCAAATA+TGG - tig0002300:10489-10508 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG - tig0002300:10637-10656 None:intergenic 25.0%
! CATTAATTGTTAGATATGCT+AGG + tig0002300:10838-10857 Msa1338600:intron 25.0%
! GTTAGAAGTTAGTTATGATT+AGG + tig0002300:10884-10903 Msa1338600:intron 25.0%
! TGAAGAATATGGTTCAATTA+GGG - tig0002300:10963-10982 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG - tig0002300:10964-10983 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+TGG + tig0002300:11004-11023 Msa1338600:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG + tig0002300:11067-11086 Msa1338600:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG + tig0002300:11119-11138 Msa1338600:intron 25.0%
! AATGAAGCATGTTAAGTATT+TGG - tig0002300:11482-11501 None:intergenic 25.0%
! CATGTTAGTTAAAAGAGTTA+AGG - tig0002300:11510-11529 None:intergenic 25.0%
!!! CTTAACTCTTTTAACTAACA+TGG + tig0002300:11508-11527 Msa1338600:three_prime_UTR 25.0%
! TCAAATAAAGGAGAATGATA+TGG - tig0002300:11677-11696 None:intergenic 25.0%
!! TCATTCTCCTTTATTTGATT+AGG + tig0002300:11679-11698 Msa1338600:three_prime_UTR 25.0%
! ATGAATCATAACTTGATGTT+AGG - tig0002300:11711-11730 None:intergenic 25.0%
! ATTGTCAAAGTACAGTAAAA+CGG + tig0002300:11729-11748 Msa1338600:three_prime_UTR 25.0%
!! AAGAGATTAGTTATTTACAG+CGG - tig0002300:10395-10414 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG + tig0002300:10461-10480 Msa1338600:intron 25.0%
! TTGATTCACATACTCAAATA+TGG - tig0002300:10489-10508 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG - tig0002300:10637-10656 None:intergenic 25.0%
! CATTAATTGTTAGATATGCT+AGG + tig0002300:10838-10857 Msa1338600:intron 25.0%
! GTTAGAAGTTAGTTATGATT+AGG + tig0002300:10884-10903 Msa1338600:intron 25.0%
! TGAAGAATATGGTTCAATTA+GGG - tig0002300:10963-10982 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG - tig0002300:10964-10983 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+TGG + tig0002300:11004-11023 Msa1338600:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG + tig0002300:11067-11086 Msa1338600:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG + tig0002300:11119-11138 Msa1338600:intron 25.0%
! AATGAAGCATGTTAAGTATT+TGG - tig0002300:11482-11501 None:intergenic 25.0%
! CATGTTAGTTAAAAGAGTTA+AGG - tig0002300:11510-11529 None:intergenic 25.0%
!!! CTTAACTCTTTTAACTAACA+TGG + tig0002300:11508-11527 Msa1338600:three_prime_UTR 25.0%
! TCAAATAAAGGAGAATGATA+TGG - tig0002300:11677-11696 None:intergenic 25.0%
!! TCATTCTCCTTTATTTGATT+AGG + tig0002300:11679-11698 Msa1338600:three_prime_UTR 25.0%
! ATGAATCATAACTTGATGTT+AGG - tig0002300:11711-11730 None:intergenic 25.0%
TGTAGATTGTAACACAAGTT+TGG - tig0002300:10010-10029 None:intergenic 30.0%
!!! TGGTGATTTTTTGTTACTGA+GGG - tig0002300:10164-10183 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG - tig0002300:10239-10258 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG + tig0002300:10237-10256 Msa1338600:CDS 30.0%
ATGAAAGTAATTACCGAAGT+GGG - tig0002300:10590-10609 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG + tig0002300:10628-10647 Msa1338600:intron 30.0%
ACTAACTTCTAACTACCTTA+AGG - tig0002300:10877-10896 None:intergenic 30.0%
AGAAGTTAGTTATGATTAGG+TGG + tig0002300:10887-10906 Msa1338600:intron 30.0%
ATTTGCTCGATGAAATTGTA+AGG + tig0002300:11353-11372 Msa1338600:three_prime_UTR 30.0%
TTTGCTCGATGAAATTGTAA+GGG + tig0002300:11354-11373 Msa1338600:three_prime_UTR 30.0%
ATTGACATTAAAGTAGGTAG+TGG + tig0002300:11558-11577 Msa1338600:three_prime_UTR 30.0%
GATGAGTCCTAATCAAATAA+AGG - tig0002300:11689-11708 None:intergenic 30.0%
TGTAGATTGTAACACAAGTT+TGG - tig0002300:10010-10029 None:intergenic 30.0%
!!! TGGTGATTTTTTGTTACTGA+GGG - tig0002300:10164-10183 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG - tig0002300:10239-10258 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG + tig0002300:10237-10256 Msa1338600:CDS 30.0%
ATGAAAGTAATTACCGAAGT+GGG - tig0002300:10590-10609 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG + tig0002300:10628-10647 Msa1338600:intron 30.0%
ACTAACTTCTAACTACCTTA+AGG - tig0002300:10877-10896 None:intergenic 30.0%
AGAAGTTAGTTATGATTAGG+TGG + tig0002300:10887-10906 Msa1338600:intron 30.0%
ATTTGCTCGATGAAATTGTA+AGG + tig0002300:11353-11372 Msa1338600:three_prime_UTR 30.0%
TTTGCTCGATGAAATTGTAA+GGG + tig0002300:11354-11373 Msa1338600:three_prime_UTR 30.0%
ATTGACATTAAAGTAGGTAG+TGG + tig0002300:11558-11577 Msa1338600:three_prime_UTR 30.0%
GATGAGTCCTAATCAAATAA+AGG - tig0002300:11689-11708 None:intergenic 30.0%
!!! GTGGTGATTTTTTGTTACTG+AGG - tig0002300:10165-10184 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG + tig0002300:10167-10186 Msa1338600:CDS 35.0%
CCGATGAAAAAATACCTTCA+TGG + tig0002300:10236-10255 Msa1338600:CDS 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG - tig0002300:10308-10327 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG - tig0002300:10309-10328 None:intergenic 35.0%
GATGAAAGTAATTACCGAAG+TGG - tig0002300:10591-10610 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG + tig0002300:10688-10707 Msa1338600:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG - tig0002300:10822-10841 None:intergenic 35.0%
! GGAGATTTGTTTAAGCCTTA+AGG + tig0002300:10859-10878 Msa1338600:intron 35.0%
AACTTGGGATCACTGTATAA+AGG + tig0002300:10928-10947 Msa1338600:intron 35.0%
GAATATGGTTCAATTAGGGT+AGG - tig0002300:10959-10978 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG - tig0002300:11036-11055 None:intergenic 35.0%
AAGTCGATCTATCTATTTGC+TGG + tig0002300:11383-11402 Msa1338600:three_prime_UTR 35.0%
! ATCTATCTATTTGCTGGTGT+TGG + tig0002300:11389-11408 Msa1338600:three_prime_UTR 35.0%
GTTAATGTGCTTCATTGTCA+AGG + tig0002300:11429-11448 Msa1338600:three_prime_UTR 35.0%
ATTGTCAAGGCAGTTAACAT+GGG + tig0002300:11442-11461 Msa1338600:three_prime_UTR 35.0%
TAACTAACATGGTGCACATA+TGG + tig0002300:11519-11538 Msa1338600:three_prime_UTR 35.0%
CCATTATGTAAGGAAAACCA+AGG - tig0002300:11604-11623 None:intergenic 35.0%
!! CCTTGGTTTTCCTTACATAA+TGG + tig0002300:11601-11620 Msa1338600:three_prime_UTR 35.0%
! GGTTTTCCTTACATAATGGT+CGG + tig0002300:11605-11624 Msa1338600:three_prime_UTR 35.0%
! ATAATGGTCGGTTCATGTAT+TGG + tig0002300:11617-11636 Msa1338600:three_prime_UTR 35.0%
! TAATGGTCGGTTCATGTATT+GGG + tig0002300:11618-11637 Msa1338600:three_prime_UTR 35.0%
TATGGATCAAAATCTAGTCC+AGG - tig0002300:11659-11678 None:intergenic 35.0%
!!! GTGGTGATTTTTTGTTACTG+AGG - tig0002300:10165-10184 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG + tig0002300:10167-10186 Msa1338600:CDS 35.0%
CCGATGAAAAAATACCTTCA+TGG + tig0002300:10236-10255 Msa1338600:CDS 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG - tig0002300:10308-10327 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG - tig0002300:10309-10328 None:intergenic 35.0%
GATGAAAGTAATTACCGAAG+TGG - tig0002300:10591-10610 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG + tig0002300:10688-10707 Msa1338600:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG - tig0002300:10822-10841 None:intergenic 35.0%
! GGAGATTTGTTTAAGCCTTA+AGG + tig0002300:10859-10878 Msa1338600:intron 35.0%
AACTTGGGATCACTGTATAA+AGG + tig0002300:10928-10947 Msa1338600:intron 35.0%
GAATATGGTTCAATTAGGGT+AGG - tig0002300:10959-10978 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG - tig0002300:11036-11055 None:intergenic 35.0%
AAGTCGATCTATCTATTTGC+TGG + tig0002300:11383-11402 Msa1338600:three_prime_UTR 35.0%
! ATCTATCTATTTGCTGGTGT+TGG + tig0002300:11389-11408 Msa1338600:three_prime_UTR 35.0%
GTTAATGTGCTTCATTGTCA+AGG + tig0002300:11429-11448 Msa1338600:three_prime_UTR 35.0%
ATTGTCAAGGCAGTTAACAT+GGG + tig0002300:11442-11461 Msa1338600:three_prime_UTR 35.0%
TAACTAACATGGTGCACATA+TGG + tig0002300:11519-11538 Msa1338600:three_prime_UTR 35.0%
CCATTATGTAAGGAAAACCA+AGG - tig0002300:11604-11623 None:intergenic 35.0%
!! CCTTGGTTTTCCTTACATAA+TGG + tig0002300:11601-11620 Msa1338600:three_prime_UTR 35.0%
! GGTTTTCCTTACATAATGGT+CGG + tig0002300:11605-11624 Msa1338600:three_prime_UTR 35.0%
! ATAATGGTCGGTTCATGTAT+TGG + tig0002300:11617-11636 Msa1338600:three_prime_UTR 35.0%
! TAATGGTCGGTTCATGTATT+GGG + tig0002300:11618-11637 Msa1338600:three_prime_UTR 35.0%
TATGGATCAAAATCTAGTCC+AGG - tig0002300:11659-11678 None:intergenic 35.0%
CAATCTACAAACACCATCCA+TGG + tig0002300:10021-10040 Msa1338600:exon 40.0%
ACATACAGTTGACAGTGATG+AGG - tig0002300:10074-10093 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG + tig0002300:10180-10199 Msa1338600:CDS 40.0%
AACAAACCCACTTCTTCTTC+TGG + tig0002300:10310-10329 Msa1338600:CDS 40.0%
GTGAATCAAAAGCCAGTGTT+TGG + tig0002300:10500-10519 Msa1338600:CDS 40.0%
! GTTTTCTATGCTCCTTTGCT+TGG + tig0002300:10542-10561 Msa1338600:CDS 40.0%
AAGGCGAAAAAACCAAGCAA+AGG - tig0002300:10557-10576 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG + tig0002300:10693-10712 Msa1338600:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG + tig0002300:10694-10713 Msa1338600:intron 40.0%
CAATTTCCGTATGACTTACG+CGG - tig0002300:11250-11269 None:intergenic 40.0%
!! GTGTTGGTTAACAGAGTAAG+CGG + tig0002300:11405-11424 Msa1338600:three_prime_UTR 40.0%
CATTGTCAAGGCAGTTAACA+TGG + tig0002300:11441-11460 Msa1338600:three_prime_UTR 40.0%
TTGAACCATCTGCAATTCCT+TGG + tig0002300:11584-11603 Msa1338600:three_prime_UTR 40.0%
GAAAACCAAGGAATTGCAGA+TGG - tig0002300:11592-11611 None:intergenic 40.0%
CATGAACCGACCATTATGTA+AGG - tig0002300:11614-11633 None:intergenic 40.0%
CAATCTACAAACACCATCCA+TGG + tig0002300:10021-10040 Msa1338600:exon 40.0%
ACATACAGTTGACAGTGATG+AGG - tig0002300:10074-10093 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG + tig0002300:10180-10199 Msa1338600:CDS 40.0%
AACAAACCCACTTCTTCTTC+TGG + tig0002300:10310-10329 Msa1338600:CDS 40.0%
GTGAATCAAAAGCCAGTGTT+TGG + tig0002300:10500-10519 Msa1338600:CDS 40.0%
! GTTTTCTATGCTCCTTTGCT+TGG + tig0002300:10542-10561 Msa1338600:CDS 40.0%
AAGGCGAAAAAACCAAGCAA+AGG - tig0002300:10557-10576 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG + tig0002300:10693-10712 Msa1338600:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG + tig0002300:10694-10713 Msa1338600:intron 40.0%
CAATTTCCGTATGACTTACG+CGG - tig0002300:11250-11269 None:intergenic 40.0%
!! GTGTTGGTTAACAGAGTAAG+CGG + tig0002300:11405-11424 Msa1338600:three_prime_UTR 40.0%
CATTGTCAAGGCAGTTAACA+TGG + tig0002300:11441-11460 Msa1338600:three_prime_UTR 40.0%
TTGAACCATCTGCAATTCCT+TGG + tig0002300:11584-11603 Msa1338600:three_prime_UTR 40.0%
GAAAACCAAGGAATTGCAGA+TGG - tig0002300:11592-11611 None:intergenic 40.0%
CATGAACCGACCATTATGTA+AGG - tig0002300:11614-11633 None:intergenic 40.0%
AGTTGACAGTGATGAGGAGA+AGG - tig0002300:10068-10087 None:intergenic 45.0%
! TTGTGGGTTGTGATGCATGT+CGG - tig0002300:10108-10127 None:intergenic 45.0%
TCACAACCCACAACCTTTCT+AGG + tig0002300:10115-10134 Msa1338600:CDS 45.0%
GGAATGCCTAGAAAGGTTGT+GGG - tig0002300:10124-10143 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG - tig0002300:10131-10150 None:intergenic 45.0%
! AGGGACGTTTTCTGACATAG+GGG - tig0002300:10145-10164 None:intergenic 45.0%
! GAGGGACGTTTTCTGACATA+GGG - tig0002300:10146-10165 None:intergenic 45.0%
! TGAGGGACGTTTTCTGACAT+AGG - tig0002300:10147-10166 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG - tig0002300:10184-10203 None:intergenic 45.0%
TTAACAGTGGCAGTGACCAA+AGG + tig0002300:10193-10212 Msa1338600:CDS 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG - tig0002300:10319-10338 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG - tig0002300:10320-10339 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG - tig0002300:10515-10534 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG + tig0002300:10560-10579 Msa1338600:CDS 45.0%
AATTACCGAAGTGGGAACAC+CGG - tig0002300:10582-10601 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG - tig0002300:10709-10728 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG + tig0002300:11130-11149 Msa1338600:intron 45.0%
AACAGACTTGAACCACAGGA+AGG - tig0002300:11145-11164 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG - tig0002300:11149-11168 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG - tig0002300:11175-11194 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG + tig0002300:11181-11200 Msa1338600:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG + tig0002300:11182-11201 Msa1338600:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG - tig0002300:11232-11251 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG + tig0002300:11241-11260 Msa1338600:three_prime_UTR 45.0%
CTAACATGGTGCACATATGG+TGG + tig0002300:11522-11541 Msa1338600:three_prime_UTR 45.0%
AGTTGACAGTGATGAGGAGA+AGG - tig0002300:10068-10087 None:intergenic 45.0%
! TTGTGGGTTGTGATGCATGT+CGG - tig0002300:10108-10127 None:intergenic 45.0%
TCACAACCCACAACCTTTCT+AGG + tig0002300:10115-10134 Msa1338600:CDS 45.0%
GGAATGCCTAGAAAGGTTGT+GGG - tig0002300:10124-10143 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG - tig0002300:10131-10150 None:intergenic 45.0%
! AGGGACGTTTTCTGACATAG+GGG - tig0002300:10145-10164 None:intergenic 45.0%
! GAGGGACGTTTTCTGACATA+GGG - tig0002300:10146-10165 None:intergenic 45.0%
! TGAGGGACGTTTTCTGACAT+AGG - tig0002300:10147-10166 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG - tig0002300:10184-10203 None:intergenic 45.0%
TTAACAGTGGCAGTGACCAA+AGG + tig0002300:10193-10212 Msa1338600:CDS 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG - tig0002300:10319-10338 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG - tig0002300:10320-10339 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG - tig0002300:10515-10534 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG + tig0002300:10560-10579 Msa1338600:CDS 45.0%
AATTACCGAAGTGGGAACAC+CGG - tig0002300:10582-10601 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG - tig0002300:10709-10728 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG + tig0002300:11130-11149 Msa1338600:intron 45.0%
AACAGACTTGAACCACAGGA+AGG - tig0002300:11145-11164 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG - tig0002300:11149-11168 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG - tig0002300:11175-11194 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG + tig0002300:11181-11200 Msa1338600:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG + tig0002300:11182-11201 Msa1338600:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG - tig0002300:11232-11251 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG + tig0002300:11241-11260 Msa1338600:three_prime_UTR 45.0%
CTAACATGGTGCACATATGG+TGG + tig0002300:11522-11541 Msa1338600:three_prime_UTR 45.0%
GGGAATGCCTAGAAAGGTTG+TGG - tig0002300:10125-10144 None:intergenic 50.0%
ACTTGACTCTGCTGAGCCTT+TGG - tig0002300:10212-10231 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG + tig0002300:10269-10288 Msa1338600:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG + tig0002300:10270-10289 Msa1338600:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG - tig0002300:10283-10302 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG - tig0002300:10286-10305 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG - tig0002300:10289-10308 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG + tig0002300:10316-10335 Msa1338600:CDS 50.0%
GGCAATTGCAGTGATAGCAG+AGG - tig0002300:10374-10393 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG + tig0002300:10697-10716 Msa1338600:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG + tig0002300:11158-11177 Msa1338600:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG + tig0002300:11186-11205 Msa1338600:CDS 50.0%
GGGAATGCCTAGAAAGGTTG+TGG - tig0002300:10125-10144 None:intergenic 50.0%
ACTTGACTCTGCTGAGCCTT+TGG - tig0002300:10212-10231 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG + tig0002300:10269-10288 Msa1338600:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG + tig0002300:10270-10289 Msa1338600:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG - tig0002300:10283-10302 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG - tig0002300:10286-10305 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG - tig0002300:10289-10308 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG + tig0002300:10316-10335 Msa1338600:CDS 50.0%
GGCAATTGCAGTGATAGCAG+AGG - tig0002300:10374-10393 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG + tig0002300:10697-10716 Msa1338600:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG + tig0002300:11158-11177 Msa1338600:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG + tig0002300:11186-11205 Msa1338600:CDS 50.0%
ACACCATCCATGGCAGTAGC+AGG + tig0002300:10031-10050 Msa1338600:exon 55.0%
CTTCCTGCTACTGCCATGGA+TGG - tig0002300:10037-10056 None:intergenic 55.0%
AGCACTTCCTGCTACTGCCA+TGG - tig0002300:10041-10060 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG - tig0002300:10253-10272 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG - tig0002300:10268-10287 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG + tig0002300:10574-10593 Msa1338600:CDS 55.0%
AGCAGCCAACAAGGAAGCTG+AGG + tig0002300:11167-11186 Msa1338600:CDS 55.0%
GGGTCTTCGAGATGAACTCC+TGG + tig0002300:11638-11657 Msa1338600:three_prime_UTR 55.0%
ACACCATCCATGGCAGTAGC+AGG + tig0002300:10031-10050 Msa1338600:exon 55.0%
CTTCCTGCTACTGCCATGGA+TGG - tig0002300:10037-10056 None:intergenic 55.0%
AGCACTTCCTGCTACTGCCA+TGG - tig0002300:10041-10060 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG - tig0002300:10253-10272 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG - tig0002300:10268-10287 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG + tig0002300:10574-10593 Msa1338600:CDS 55.0%
AGCAGCCAACAAGGAAGCTG+AGG + tig0002300:11167-11186 Msa1338600:CDS 55.0%
GGGTCTTCGAGATGAACTCC+TGG + tig0002300:11638-11657 Msa1338600:three_prime_UTR 55.0%
CGAAGTGGGAACACCGGTGA+AGG - tig0002300:10576-10595 None:intergenic 60.0%
CGAAGTGGGAACACCGGTGA+AGG - tig0002300:10576-10595 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0002300 gene 10005 11749 10005 ID=Msa1338600;Name=Msa1338600
tig0002300 mRNA 10005 11749 10005 ID=Msa1338600-mRNA-1;Parent=Msa1338600;Name=Msa1338600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=35|1|1|1|1|1|3|534|182
tig0002300 exon 10005 10396 10005 ID=Msa1338600-mRNA-1:exon:1716;Parent=Msa1338600-mRNA-1
tig0002300 exon 10479 10595 10479 ID=Msa1338600-mRNA-1:exon:1717;Parent=Msa1338600-mRNA-1
tig0002300 exon 11141 11749 11141 ID=Msa1338600-mRNA-1:exon:1718;Parent=Msa1338600-mRNA-1
tig0002300 five_prime_UTR 10005 10039 10005 ID=Msa1338600-mRNA-1:five_prime_utr;Parent=Msa1338600-mRNA-1
tig0002300 CDS 10040 10396 10040 ID=Msa1338600-mRNA-1:cds;Parent=Msa1338600-mRNA-1
tig0002300 CDS 10479 10595 10479 ID=Msa1338600-mRNA-1:cds;Parent=Msa1338600-mRNA-1
tig0002300 CDS 11141 11215 11141 ID=Msa1338600-mRNA-1:cds;Parent=Msa1338600-mRNA-1
tig0002300 three_prime_UTR 11216 11749 11216 ID=Msa1338600-mRNA-1:three_prime_utr;Parent=Msa1338600-mRNA-1
Gene Sequence

>Msa1338600

ATGGCAGTAGCAGGAAGTGCTGCTACCTTCTCCTCATCACTGTCAACTGTATGTTTGTTACAAAACCGACATGCATCACAACCCACAACCTTTCTAGGCATTCCCCTATGTCAGAAAACGTCCCTCAGTAACAAAAAATCACCACACAGGTTTTTAACAGTGGCAGTGACCAAAGGCTCAGCAGAGTCAAGTAAATCCGATGAAAAAATACCTTCATGGGCTAAGCCTGACTCAGAAGAACCTCCTCCATGGGCTCAAAATGAAGCCCAAAACAAACCCACTTCTTCTTCTGGACAAGGATTTGTTATTCCGTTTTATGTTTATTTACTTGCCTCTGCTATCACTGCAATTGCCGCTATTGGTTCCATATTTGAGTATGTGAATCAAAAGCCAGTGTTTGGAGTTTTGAGCTCTGATAGTGTTTTCTATGCTCCTTTGCTTGGTTTTTTCGCCTTCACCGGTGTTCCCACTTCGGCCTTCCTGTGGTTCAAGTCTGTTCAAGCAGCCAACAAGGAAGCTGAGGAACAAGACAAGAGGGATGGTTATTAA

Protein sequence

>Msa1338600

MAVAGSAATFSSSLSTVCLLQNRHASQPTTFLGIPLCQKTSLSNKKSPHRFLTVAVTKGSAESSKSDEKIPSWAKPDSEEPPPWAQNEAQNKPTSSSGQGFVIPFYVYLLASAITAIAAIGSIFEYVNQKPVFGVLSSDSVFYAPLLGFFAFTGVPTSAFLWFKSVQAANKEAEEQDKRDGY*