AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028890 MtrunA17_Chr7g0249261 98.131 214 4 0 1 214 1 214 1.13e-153 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028890 AT4G12800.1 79.358 218 39 2 2 214 3 219 2.72e-102 295
Msa1028890 AT4G12800.2 79.358 218 39 2 2 214 65 281 3.39e-102 297

Find 96 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCCTTCTTTATGTTT+TGG 0.217771 7_1:-62088864 Msa1028890:CDS
GCAGGCTCTCTTGCAGCTGC+TGG 0.244287 7_1:-62089079 Msa1028890:CDS
ATTTGATTGATAGTTGAAAT+TGG 0.261868 7_1:-62088591 Msa1028890:three_prime_UTR
AGCATTTGCCTTACAATCTA+TGG 0.270605 7_1:-62089040 Msa1028890:CDS
CTTGAATTTGCATTGAACTA+TGG 0.275527 7_1:-62090153 Msa1028890:five_prime_UTR
CAGGCTCTCTTGCAGCTGCT+GGG 0.294839 7_1:-62089078 Msa1028890:CDS
GCTCCATCTTTGACCTTAAC+AGG 0.301389 7_1:-62088983 Msa1028890:CDS
TTTGTTTACTTAACAAAGTA+TGG 0.310191 7_1:+62088836 None:intergenic
GCATATTCGGTGTTCCTTAG+AGG 0.320651 7_1:+62089109 None:intergenic
GTGGCATTTCTGGTGTTACC+TGG 0.330300 7_1:-62088889 Msa1028890:CDS
TCGTTAAAGCCGGGCCTCTA+AGG 0.342506 7_1:-62089123 Msa1028890:CDS
GCCTGCTGATCCGGCATATT+CGG 0.350236 7_1:+62089096 None:intergenic
GCAATTTAACTTCACTGTTA+AGG 0.363545 7_1:-62089926 Msa1028890:CDS
TCAGCTGTTTGGAGCGGATC+GGG 0.396097 7_1:+62088947 None:intergenic
TGGACCAACCATCAGCTGTT+TGG 0.398888 7_1:+62088936 None:intergenic
TGCAAGAGAGCCTGCTGATC+CGG 0.399513 7_1:+62089087 None:intergenic
CATAGTTCAATGCAAATTCA+AGG 0.412347 7_1:+62090154 None:intergenic
CAATGCAAATTCAAGGTTTG+TGG 0.412400 7_1:+62090161 None:intergenic
AAGTTAAATTGCCTTCTAGA+AGG 0.412684 7_1:+62089937 None:intergenic
ATGAAACTCCATAGATTGTA+AGG 0.413757 7_1:+62089032 None:intergenic
GTCCAGCTTCACTAGACCTT+TGG 0.414369 7_1:-62090004 Msa1028890:CDS
GTTTCAAGGCTTCCAATGAA+TGG 0.415748 7_1:+62089274 None:intergenic
TGCAGTGAACCCACTACTTA+GGG 0.418933 7_1:-62089191 Msa1028890:CDS
ACAAGTGGGCTTGATGTAAC+TGG 0.422772 7_1:+62089250 None:intergenic
GTCACACCTAGGGGACTTTG+TGG 0.427623 7_1:-62089982 Msa1028890:CDS
CTGCTTCTTACGGCCTGTTA+AGG 0.438239 7_1:+62088970 None:intergenic
TCCATCAGTTGCCTTCTAGA+AGG 0.443118 7_1:-62089948 Msa1028890:CDS
ACCGAATATGCCGGATCAGC+AGG 0.445265 7_1:-62089097 Msa1028890:CDS
GAGGCCCGGCTTTAACGAAC+GGG 0.446312 7_1:+62089128 None:intergenic
TTTGTGTGCTAATGAGATAA+TGG 0.449976 7_1:-62088782 Msa1028890:three_prime_UTR
CTGCAGTGAACCCACTACTT+AGG 0.453704 7_1:-62089192 Msa1028890:CDS
ATCAACGGTGACCCATTCAT+TGG 0.455192 7_1:-62089286 Msa1028890:CDS
CATGGCAGCTGCTTCTCCTA+TGG 0.458111 7_1:-62090040 Msa1028890:CDS
TTCACTGCAGTTCTGTAGCC+TGG 0.467820 7_1:+62089205 None:intergenic
CGTTGATTGGTTGAATCACT+TGG 0.469160 7_1:+62089302 None:intergenic
GCGGATCGGGCTGCTTCTTA+CGG 0.470007 7_1:+62088960 None:intergenic
TTCGGTGTTCCTTAGAGGCC+CGG 0.471580 7_1:+62089114 None:intergenic
TTTCAAGGCTTCCAATGAAT+GGG 0.476089 7_1:+62089275 None:intergenic
ATGAATGGGTCACCGTTGAT+TGG 0.494570 7_1:+62089289 None:intergenic
AGTTCTGTTGATTCCACAAG+TGG 0.497526 7_1:+62090068 None:intergenic
GGAGTTTCATCATTCAATGA+AGG 0.498940 7_1:-62089019 Msa1028890:CDS
GTAGGCCCGTTCGTTAAAGC+CGG 0.500427 7_1:-62089133 Msa1028890:CDS
CATCAAGCCCACTTGTTGCA+TGG 0.506359 7_1:-62089243 Msa1028890:CDS
TCTCTGTGCTGCTCCACTTG+TGG 0.508713 7_1:-62090081 Msa1028890:five_prime_UTR
CGGCCTGTTAAGGTCAAAGA+TGG 0.509120 7_1:+62088980 None:intergenic
GACCAAAGGTCTAGTGAAGC+TGG 0.510695 7_1:+62090002 None:intergenic
GATGGTTGGTCCAAGTTCAC+TGG 0.512448 7_1:-62088926 Msa1028890:CDS
TGGCATTTCTGGTGTTACCT+GGG 0.515577 7_1:-62088888 Msa1028890:CDS
TAAGGCAATCCAATCTGAAA+AGG 0.518673 7_1:-62089908 Msa1028890:intron
TAGTGAAGCTGGACTTGAGT+TGG 0.519806 7_1:+62090013 None:intergenic
TACACACACTGGTTGAAATG+AGG 0.519894 7_1:+62090109 None:intergenic
TTGATGTAACTGGAGTTTCA+AGG 0.522174 7_1:+62089260 None:intergenic
GGCCTACGAGGAAGAATCCA+TGG 0.522700 7_1:+62089149 None:intergenic
TAGACCTTTGGTCACACCTA+GGG 0.524311 7_1:-62089992 Msa1028890:CDS
GACTTGAGTTGGCTTGCCAT+AGG 0.524629 7_1:+62090024 None:intergenic
GAAGATCCAAAACATAAAGA+AGG 0.530701 7_1:+62088858 None:intergenic
TAGAAGGCAACTGATGGAGT+GGG 0.531155 7_1:+62089953 None:intergenic
TGGTACCTCTCCAACTTACC+AGG 0.533263 7_1:-62089223 Msa1028890:CDS
TAGGCCCGTTCGTTAAAGCC+GGG 0.536476 7_1:-62089132 Msa1028890:CDS
CGCTCCAAACAGCTGATGGT+TGG 0.542041 7_1:-62088940 Msa1028890:CDS
ATAAAGAAGGAAGTAAGCCC+AGG 0.543130 7_1:+62088871 None:intergenic
GTTGGTCCAAGTTCACTGGT+GGG 0.544476 7_1:-62088922 Msa1028890:CDS
ATTGAAGTCGGCTTAGCCCA+TGG 0.544487 7_1:-62089166 Msa1028890:CDS
ATCAGCTGTTTGGAGCGGAT+CGG 0.546589 7_1:+62088946 None:intergenic
CTAAGGAACACCGAATATGC+CGG 0.551083 7_1:-62089106 Msa1028890:CDS
GCCTTCTAGAAGGCAACTGA+TGG 0.551586 7_1:+62089947 None:intergenic
CTTCAATTCCCCTAAGTAGT+GGG 0.556813 7_1:+62089182 None:intergenic
AGAGGCCCGGCTTTAACGAA+CGG 0.558183 7_1:+62089127 None:intergenic
GATCCGCTCCAAACAGCTGA+TGG 0.563858 7_1:-62088944 Msa1028890:CDS
GGTTGGTCCAAGTTCACTGG+TGG 0.565191 7_1:-62088923 Msa1028890:CDS
AGTTCTGTAGCCTGGTAAGT+TGG 0.565590 7_1:+62089213 None:intergenic
CTACTTAGGGGAATTGAAGT+CGG 0.568063 7_1:-62089178 Msa1028890:CDS
ACTTCAATTCCCCTAAGTAG+TGG 0.569195 7_1:+62089181 None:intergenic
ACACACACTGGTTGAAATGA+GGG 0.573827 7_1:+62090110 None:intergenic
CAGAGAGTTGTTACACACAC+TGG 0.590670 7_1:+62090098 None:intergenic
GAAGAGCCACAAAGTCCCCT+AGG 0.592421 7_1:+62089976 None:intergenic
CTAGACCTTTGGTCACACCT+AGG 0.596879 7_1:-62089993 Msa1028890:CDS
GAGAGGTACCATGCAACAAG+TGG 0.599829 7_1:+62089235 None:intergenic
CTAGAAGGCAACTGATGGAG+TGG 0.603613 7_1:+62089952 None:intergenic
ATGGAAGTACTTAGCCACTC+TGG 0.608137 7_1:-62090134 Msa1028890:five_prime_UTR
TATCAGCCAATGAGAAGTGA+GGG 0.611980 7_1:-62090194 None:intergenic
GCCCATGGATTCTTCCTCGT+AGG 0.621168 7_1:-62089151 Msa1028890:CDS
AATCAACAGAACTTAAGTCA+TGG 0.622961 7_1:-62090058 Msa1028890:exon
TGTAGCCTGGTAAGTTGGAG+AGG 0.625193 7_1:+62089218 None:intergenic
GCCTACGAGGAAGAATCCAT+GGG 0.633522 7_1:+62089150 None:intergenic
CTTTAACGAACGGGCCTACG+AGG 0.656397 7_1:+62089137 None:intergenic
CAACCATCAGCTGTTTGGAG+CGG 0.658464 7_1:+62088941 None:intergenic
ATATCAGCCAATGAGAAGTG+AGG 0.663341 7_1:-62090195 None:intergenic
AGACCTTTGGTCACACCTAG+GGG 0.664459 7_1:-62089991 Msa1028890:CDS
AGATTGTAAGGCAAATGCTG+AGG 0.667416 7_1:+62089044 None:intergenic
GCAGTGAACCCACTACTTAG+GGG 0.670055 7_1:-62089190 Msa1028890:CDS
AGAAGGCAACTGATGGAGTG+GGG 0.675058 7_1:+62089954 None:intergenic
CAAGTGATTCAACCAATCAA+CGG 0.677130 7_1:-62089301 Msa1028890:CDS
AGAGGTACCATGCAACAAGT+GGG 0.679084 7_1:+62089236 None:intergenic
AGTCCCCTAGGTGTGACCAA+AGG 0.679971 7_1:+62089988 None:intergenic
GTTGAAATGAGGGACCAGAG+TGG 0.760347 7_1:+62090120 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAACTAACTATATAAA+GGG + chr7_1:62089017-62089036 None:intergenic 15.0%
!! AAACATAACTAACTATATAA+AGG + chr7_1:62089018-62089037 None:intergenic 15.0%
!! TTGAATTATGTAAAAATTGA+TGG - chr7_1:62090103-62090122 Msa1028890:five_prime_UTR 15.0%
!! AACATAACTAACTATATAAA+GGG + chr7_1:62089017-62089036 None:intergenic 15.0%
!! AAACATAACTAACTATATAA+AGG + chr7_1:62089018-62089037 None:intergenic 15.0%
!! TTGAATTATGTAAAAATTGA+TGG - chr7_1:62090103-62090122 Msa1028890:five_prime_UTR 15.0%
!!! TTGCTAATGTATTTTAACTA+TGG + chr7_1:62088969-62088988 None:intergenic 20.0%
!! AACATGTTCATTATTTAAAG+TGG - chr7_1:62089122-62089141 Msa1028890:CDS 20.0%
!! TATATATATGTTCATTGCTT+AGG - chr7_1:62089165-62089184 Msa1028890:CDS 20.0%
!! GTTCATTTCTATAATTGAAT+AGG - chr7_1:62089328-62089347 Msa1028890:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG - chr7_1:62089416-62089435 Msa1028890:intron 20.0%
!! TTTGTTTACTTAACAAAGTA+TGG + chr7_1:62089934-62089953 None:intergenic 20.0%
!! TATGTAAAAATTGATGGAAA+TGG - chr7_1:62090109-62090128 Msa1028890:five_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG - chr7_1:62090176-62090195 Msa1028890:five_prime_UTR 20.0%
!!! TTGCTAATGTATTTTAACTA+TGG + chr7_1:62088969-62088988 None:intergenic 20.0%
!! AACATGTTCATTATTTAAAG+TGG - chr7_1:62089122-62089141 Msa1028890:CDS 20.0%
!! TATATATATGTTCATTGCTT+AGG - chr7_1:62089165-62089184 Msa1028890:CDS 20.0%
!! GTTCATTTCTATAATTGAAT+AGG - chr7_1:62089328-62089347 Msa1028890:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG - chr7_1:62089416-62089435 Msa1028890:intron 20.0%
!! TTTGTTTACTTAACAAAGTA+TGG + chr7_1:62089934-62089953 None:intergenic 20.0%
!! TATGTAAAAATTGATGGAAA+TGG - chr7_1:62090109-62090128 Msa1028890:five_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG - chr7_1:62090176-62090195 Msa1028890:five_prime_UTR 20.0%
!! TAAACAAAGAGAGTATACAT+AGG + chr7_1:62088905-62088924 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG + chr7_1:62089385-62089404 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG + chr7_1:62089413-62089432 None:intergenic 25.0%
!! TTACTTCCTTCTTTATGTTT+TGG - chr7_1:62089903-62089922 Msa1028890:intron 25.0%
!! TAAACAAAGAGAGTATACAT+AGG + chr7_1:62088905-62088924 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG + chr7_1:62089385-62089404 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG + chr7_1:62089413-62089432 None:intergenic 25.0%
!! TTACTTCCTTCTTTATGTTT+TGG - chr7_1:62089903-62089922 Msa1028890:intron 25.0%
CATAGTTCAATGCAAATTCA+AGG + chr7_1:62088616-62088635 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG - chr7_1:62088614-62088633 Msa1028890:three_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG - chr7_1:62088709-62088728 Msa1028890:three_prime_UTR 30.0%
AAGTTAAATTGCCTTCTAGA+AGG + chr7_1:62088833-62088852 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG - chr7_1:62088841-62088860 Msa1028890:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG + chr7_1:62088898-62088917 None:intergenic 30.0%
!! AGATAAAGTGGACTAGATTA+TGG + chr7_1:62088940-62088959 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG + chr7_1:62088952-62088971 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG + chr7_1:62089060-62089079 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG - chr7_1:62089169-62089188 Msa1028890:CDS 30.0%
!! TGTGTAATTTGTTCATCACT+TGG - chr7_1:62089256-62089275 Msa1028890:CDS 30.0%
ATGAAACTCCATAGATTGTA+AGG + chr7_1:62089738-62089757 None:intergenic 30.0%
GAAGATCCAAAACATAAAGA+AGG + chr7_1:62089912-62089931 None:intergenic 30.0%
TTTGTGTGCTAATGAGATAA+TGG - chr7_1:62089985-62090004 Msa1028890:CDS 30.0%
CATAGTTCAATGCAAATTCA+AGG + chr7_1:62088616-62088635 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG - chr7_1:62088614-62088633 Msa1028890:three_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG - chr7_1:62088709-62088728 Msa1028890:three_prime_UTR 30.0%
AAGTTAAATTGCCTTCTAGA+AGG + chr7_1:62088833-62088852 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG - chr7_1:62088841-62088860 Msa1028890:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG + chr7_1:62088898-62088917 None:intergenic 30.0%
!! AGATAAAGTGGACTAGATTA+TGG + chr7_1:62088940-62088959 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG + chr7_1:62088952-62088971 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG + chr7_1:62089060-62089079 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG - chr7_1:62089169-62089188 Msa1028890:CDS 30.0%
!! TGTGTAATTTGTTCATCACT+TGG - chr7_1:62089256-62089275 Msa1028890:CDS 30.0%
ATGAAACTCCATAGATTGTA+AGG + chr7_1:62089738-62089757 None:intergenic 30.0%
GAAGATCCAAAACATAAAGA+AGG + chr7_1:62089912-62089931 None:intergenic 30.0%
TTTGTGTGCTAATGAGATAA+TGG - chr7_1:62089985-62090004 Msa1028890:CDS 30.0%
CAATGCAAATTCAAGGTTTG+TGG + chr7_1:62088609-62088628 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG - chr7_1:62088859-62088878 Msa1028890:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG + chr7_1:62088871-62088890 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG + chr7_1:62088895-62088914 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG - chr7_1:62089183-62089202 Msa1028890:CDS 35.0%
CCTATGACAGTAGTCAAAAA+CGG - chr7_1:62089281-62089300 Msa1028890:CDS 35.0%
! TGGTAATTTTGCTGCAACAA+TGG + chr7_1:62089448-62089467 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG - chr7_1:62089466-62089485 Msa1028890:intron 35.0%
TTTCAAGGCTTCCAATGAAT+GGG + chr7_1:62089495-62089514 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG + chr7_1:62089510-62089529 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG - chr7_1:62089727-62089746 Msa1028890:intron 35.0%
GGAGTTTCATCATTCAATGA+AGG - chr7_1:62089748-62089767 Msa1028890:intron 35.0%
!! TTTTTCTTTGGTGGCATTTC+TGG - chr7_1:62089868-62089887 Msa1028890:intron 35.0%
CAATGCAAATTCAAGGTTTG+TGG + chr7_1:62088609-62088628 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG - chr7_1:62088859-62088878 Msa1028890:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG + chr7_1:62088871-62088890 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG + chr7_1:62088895-62088914 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG - chr7_1:62089183-62089202 Msa1028890:CDS 35.0%
CCTATGACAGTAGTCAAAAA+CGG - chr7_1:62089281-62089300 Msa1028890:CDS 35.0%
! TGGTAATTTTGCTGCAACAA+TGG + chr7_1:62089448-62089467 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG - chr7_1:62089466-62089485 Msa1028890:intron 35.0%
TTTCAAGGCTTCCAATGAAT+GGG + chr7_1:62089495-62089514 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG + chr7_1:62089510-62089529 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG - chr7_1:62089727-62089746 Msa1028890:intron 35.0%
GGAGTTTCATCATTCAATGA+AGG - chr7_1:62089748-62089767 Msa1028890:intron 35.0%
!! TTTTTCTTTGGTGGCATTTC+TGG - chr7_1:62089868-62089887 Msa1028890:intron 35.0%
! ACACACACTGGTTGAAATGA+GGG + chr7_1:62088660-62088679 None:intergenic 40.0%
! TACACACACTGGTTGAAATG+AGG + chr7_1:62088661-62088680 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG + chr7_1:62088702-62088721 None:intergenic 40.0%
!! CCGTTTTTGACTACTGTCAT+AGG + chr7_1:62089284-62089303 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG + chr7_1:62089468-62089487 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG + chr7_1:62089496-62089515 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG + chr7_1:62089588-62089607 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG + chr7_1:62089589-62089608 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG - chr7_1:62089589-62089608 Msa1028890:intron 40.0%
AGATTGTAAGGCAAATGCTG+AGG + chr7_1:62089726-62089745 None:intergenic 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG - chr7_1:62089856-62089875 Msa1028890:intron 40.0%
ATAAAGAAGGAAGTAAGCCC+AGG + chr7_1:62089899-62089918 None:intergenic 40.0%
! ACACACACTGGTTGAAATGA+GGG + chr7_1:62088660-62088679 None:intergenic 40.0%
! TACACACACTGGTTGAAATG+AGG + chr7_1:62088661-62088680 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG + chr7_1:62088702-62088721 None:intergenic 40.0%
!! CCGTTTTTGACTACTGTCAT+AGG + chr7_1:62089284-62089303 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG + chr7_1:62089468-62089487 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG + chr7_1:62089496-62089515 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG + chr7_1:62089588-62089607 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG + chr7_1:62089589-62089608 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG - chr7_1:62089589-62089608 Msa1028890:intron 40.0%
AGATTGTAAGGCAAATGCTG+AGG + chr7_1:62089726-62089745 None:intergenic 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG - chr7_1:62089856-62089875 Msa1028890:intron 40.0%
ATAAAGAAGGAAGTAAGCCC+AGG + chr7_1:62089899-62089918 None:intergenic 40.0%
!! ATGGAAGTACTTAGCCACTC+TGG - chr7_1:62088633-62088652 Msa1028890:three_prime_UTR 45.0%
CAGAGAGTTGTTACACACAC+TGG + chr7_1:62088672-62088691 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG + chr7_1:62088757-62088776 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG - chr7_1:62088775-62088794 Msa1028890:three_prime_UTR 45.0%
TAGAAGGCAACTGATGGAGT+GGG + chr7_1:62088817-62088836 None:intergenic 45.0%
TCCATCAGTTGCCTTCTAGA+AGG - chr7_1:62088819-62088838 Msa1028890:three_prime_UTR 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG - chr7_1:62089200-62089219 Msa1028890:CDS 45.0%
ATGAATGGGTCACCGTTGAT+TGG + chr7_1:62089481-62089500 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG - chr7_1:62089481-62089500 Msa1028890:intron 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG + chr7_1:62089520-62089539 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG + chr7_1:62089534-62089553 None:intergenic 45.0%
AGTTCTGTAGCCTGGTAAGT+TGG + chr7_1:62089557-62089576 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG - chr7_1:62089576-62089595 Msa1028890:intron 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG + chr7_1:62089661-62089680 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG - chr7_1:62089661-62089680 Msa1028890:intron 45.0%
GCTCCATCTTTGACCTTAAC+AGG - chr7_1:62089784-62089803 Msa1028890:intron 45.0%
GAAAAACCCACCAGTGAACT+TGG + chr7_1:62089854-62089873 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+TGG - chr7_1:62089859-62089878 Msa1028890:intron 45.0%
!! TGGCATTTCTGGTGTTACCT+GGG - chr7_1:62089879-62089898 Msa1028890:intron 45.0%
!! ATGGAAGTACTTAGCCACTC+TGG - chr7_1:62088633-62088652 Msa1028890:three_prime_UTR 45.0%
CAGAGAGTTGTTACACACAC+TGG + chr7_1:62088672-62088691 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG + chr7_1:62088757-62088776 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG - chr7_1:62088775-62088794 Msa1028890:three_prime_UTR 45.0%
TAGAAGGCAACTGATGGAGT+GGG + chr7_1:62088817-62088836 None:intergenic 45.0%
TCCATCAGTTGCCTTCTAGA+AGG - chr7_1:62088819-62088838 Msa1028890:three_prime_UTR 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG - chr7_1:62089200-62089219 Msa1028890:CDS 45.0%
ATGAATGGGTCACCGTTGAT+TGG + chr7_1:62089481-62089500 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG - chr7_1:62089481-62089500 Msa1028890:intron 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG + chr7_1:62089520-62089539 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG + chr7_1:62089534-62089553 None:intergenic 45.0%
AGTTCTGTAGCCTGGTAAGT+TGG + chr7_1:62089557-62089576 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG - chr7_1:62089576-62089595 Msa1028890:intron 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG + chr7_1:62089661-62089680 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG - chr7_1:62089661-62089680 Msa1028890:intron 45.0%
GCTCCATCTTTGACCTTAAC+AGG - chr7_1:62089784-62089803 Msa1028890:intron 45.0%
GAAAAACCCACCAGTGAACT+TGG + chr7_1:62089854-62089873 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+TGG - chr7_1:62089859-62089878 Msa1028890:intron 45.0%
!! TGGCATTTCTGGTGTTACCT+GGG - chr7_1:62089879-62089898 Msa1028890:intron 45.0%
GTTGAAATGAGGGACCAGAG+TGG + chr7_1:62088650-62088669 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG + chr7_1:62088746-62088765 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG - chr7_1:62088763-62088782 Msa1028890:three_prime_UTR 50.0%
GACCAAAGGTCTAGTGAAGC+TGG + chr7_1:62088768-62088787 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG - chr7_1:62088774-62088793 Msa1028890:three_prime_UTR 50.0%
AGACCTTTGGTCACACCTAG+GGG - chr7_1:62088776-62088795 Msa1028890:three_prime_UTR 50.0%
AGAAGGCAACTGATGGAGTG+GGG + chr7_1:62088816-62088835 None:intergenic 50.0%
CTAGAAGGCAACTGATGGAG+TGG + chr7_1:62088818-62088837 None:intergenic 50.0%
! GCCTTCTAGAAGGCAACTGA+TGG + chr7_1:62088823-62088842 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG - chr7_1:62089524-62089543 Msa1028890:intron 50.0%
!! GAGAGGTACCATGCAACAAG+TGG + chr7_1:62089535-62089554 None:intergenic 50.0%
TGGTACCTCTCCAACTTACC+AGG - chr7_1:62089544-62089563 Msa1028890:intron 50.0%
! TGTAGCCTGGTAAGTTGGAG+AGG + chr7_1:62089552-62089571 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG + chr7_1:62089565-62089584 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG - chr7_1:62089575-62089594 Msa1028890:intron 50.0%
GCAGTGAACCCACTACTTAG+GGG - chr7_1:62089577-62089596 Msa1028890:intron 50.0%
! ATTGAAGTCGGCTTAGCCCA+TGG - chr7_1:62089601-62089620 Msa1028890:intron 50.0%
GCCTACGAGGAAGAATCCAT+GGG + chr7_1:62089620-62089639 None:intergenic 50.0%
CGGCCTGTTAAGGTCAAAGA+TGG + chr7_1:62089790-62089809 None:intergenic 50.0%
CTGCTTCTTACGGCCTGTTA+AGG + chr7_1:62089800-62089819 None:intergenic 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG + chr7_1:62089824-62089843 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG + chr7_1:62089829-62089848 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG + chr7_1:62089834-62089853 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+TGG - chr7_1:62089841-62089860 Msa1028890:intron 50.0%
GTTGGTCCAAGTTCACTGGT+GGG - chr7_1:62089845-62089864 Msa1028890:intron 50.0%
!! GTGGCATTTCTGGTGTTACC+TGG - chr7_1:62089878-62089897 Msa1028890:intron 50.0%
GTTGAAGTCCCTCACTTCTC+TGG + chr7_1:62088584-62088603 None:intergenic 50.0%
GTTGAAATGAGGGACCAGAG+TGG + chr7_1:62088650-62088669 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG + chr7_1:62088746-62088765 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG - chr7_1:62088763-62088782 Msa1028890:three_prime_UTR 50.0%
GACCAAAGGTCTAGTGAAGC+TGG + chr7_1:62088768-62088787 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG - chr7_1:62088774-62088793 Msa1028890:three_prime_UTR 50.0%
AGACCTTTGGTCACACCTAG+GGG - chr7_1:62088776-62088795 Msa1028890:three_prime_UTR 50.0%
AGAAGGCAACTGATGGAGTG+GGG + chr7_1:62088816-62088835 None:intergenic 50.0%
CTAGAAGGCAACTGATGGAG+TGG + chr7_1:62088818-62088837 None:intergenic 50.0%
! GCCTTCTAGAAGGCAACTGA+TGG + chr7_1:62088823-62088842 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG - chr7_1:62089524-62089543 Msa1028890:intron 50.0%
!! GAGAGGTACCATGCAACAAG+TGG + chr7_1:62089535-62089554 None:intergenic 50.0%
TGGTACCTCTCCAACTTACC+AGG - chr7_1:62089544-62089563 Msa1028890:intron 50.0%
! TGTAGCCTGGTAAGTTGGAG+AGG + chr7_1:62089552-62089571 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG + chr7_1:62089565-62089584 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG - chr7_1:62089575-62089594 Msa1028890:intron 50.0%
GCAGTGAACCCACTACTTAG+GGG - chr7_1:62089577-62089596 Msa1028890:intron 50.0%
! ATTGAAGTCGGCTTAGCCCA+TGG - chr7_1:62089601-62089620 Msa1028890:intron 50.0%
GCCTACGAGGAAGAATCCAT+GGG + chr7_1:62089620-62089639 None:intergenic 50.0%
CGGCCTGTTAAGGTCAAAGA+TGG + chr7_1:62089790-62089809 None:intergenic 50.0%
CTGCTTCTTACGGCCTGTTA+AGG + chr7_1:62089800-62089819 None:intergenic 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG + chr7_1:62089824-62089843 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG + chr7_1:62089829-62089848 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG + chr7_1:62089834-62089853 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+TGG - chr7_1:62089841-62089860 Msa1028890:intron 50.0%
GTTGGTCCAAGTTCACTGGT+GGG - chr7_1:62089845-62089864 Msa1028890:intron 50.0%
!! GTGGCATTTCTGGTGTTACC+TGG - chr7_1:62089878-62089897 Msa1028890:intron 50.0%
! TCTCTGTGCTGCTCCACTTG+TGG - chr7_1:62088686-62088705 Msa1028890:three_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG - chr7_1:62088727-62088746 Msa1028890:three_prime_UTR 55.0%
AGTCCCCTAGGTGTGACCAA+AGG + chr7_1:62088782-62088801 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG - chr7_1:62088785-62088804 Msa1028890:three_prime_UTR 55.0%
GAAGAGCCACAAAGTCCCCT+AGG + chr7_1:62088794-62088813 None:intergenic 55.0%
GCCCATGGATTCTTCCTCGT+AGG - chr7_1:62089616-62089635 Msa1028890:intron 55.0%
GGCCTACGAGGAAGAATCCA+TGG + chr7_1:62089621-62089640 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG + chr7_1:62089633-62089652 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG - chr7_1:62089634-62089653 Msa1028890:intron 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG - chr7_1:62089635-62089654 Msa1028890:intron 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG + chr7_1:62089643-62089662 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG - chr7_1:62089644-62089663 Msa1028890:intron 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG + chr7_1:62089656-62089675 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG - chr7_1:62089670-62089689 Msa1028890:intron 55.0%
GCCTGCTGATCCGGCATATT+CGG + chr7_1:62089674-62089693 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG + chr7_1:62089683-62089702 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG + chr7_1:62089823-62089842 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG - chr7_1:62089823-62089842 Msa1028890:intron 55.0%
CGCTCCAAACAGCTGATGGT+TGG - chr7_1:62089827-62089846 Msa1028890:intron 55.0%
! GGTTGGTCCAAGTTCACTGG+TGG - chr7_1:62089844-62089863 Msa1028890:intron 55.0%
! TCTCTGTGCTGCTCCACTTG+TGG - chr7_1:62088686-62088705 Msa1028890:three_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG - chr7_1:62088727-62088746 Msa1028890:three_prime_UTR 55.0%
AGTCCCCTAGGTGTGACCAA+AGG + chr7_1:62088782-62088801 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG - chr7_1:62088785-62088804 Msa1028890:three_prime_UTR 55.0%
GAAGAGCCACAAAGTCCCCT+AGG + chr7_1:62088794-62088813 None:intergenic 55.0%
GCCCATGGATTCTTCCTCGT+AGG - chr7_1:62089616-62089635 Msa1028890:intron 55.0%
GGCCTACGAGGAAGAATCCA+TGG + chr7_1:62089621-62089640 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG + chr7_1:62089633-62089652 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG - chr7_1:62089634-62089653 Msa1028890:intron 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG - chr7_1:62089635-62089654 Msa1028890:intron 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG + chr7_1:62089643-62089662 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG - chr7_1:62089644-62089663 Msa1028890:intron 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG + chr7_1:62089656-62089675 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG - chr7_1:62089670-62089689 Msa1028890:intron 55.0%
GCCTGCTGATCCGGCATATT+CGG + chr7_1:62089674-62089693 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG + chr7_1:62089683-62089702 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG + chr7_1:62089823-62089842 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG - chr7_1:62089823-62089842 Msa1028890:intron 55.0%
CGCTCCAAACAGCTGATGGT+TGG - chr7_1:62089827-62089846 Msa1028890:intron 55.0%
! GGTTGGTCCAAGTTCACTGG+TGG - chr7_1:62089844-62089863 Msa1028890:intron 55.0%
! GAGGCCCGGCTTTAACGAAC+GGG + chr7_1:62089642-62089661 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG - chr7_1:62089689-62089708 Msa1028890:intron 60.0%
GCGGATCGGGCTGCTTCTTA+CGG + chr7_1:62089810-62089829 None:intergenic 60.0%
! GAGGCCCGGCTTTAACGAAC+GGG + chr7_1:62089642-62089661 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG - chr7_1:62089689-62089708 Msa1028890:intron 60.0%
GCGGATCGGGCTGCTTCTTA+CGG + chr7_1:62089810-62089829 None:intergenic 60.0%
GCAGGCTCTCTTGCAGCTGC+TGG - chr7_1:62089688-62089707 Msa1028890:intron 65.0%
GCAGGCTCTCTTGCAGCTGC+TGG - chr7_1:62089688-62089707 Msa1028890:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62088584 62090205 62088584 ID=Msa1028890;Name=Msa1028890
chr7_1 mRNA 62088584 62090205 62088584 ID=Msa1028890-mRNA-1;Parent=Msa1028890;Name=Msa1028890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=144|1|1|1|1|1|2|257|214
chr7_1 exon 62088584 62089332 62088584 ID=Msa1028890-mRNA-1:exon:13198;Parent=Msa1028890-mRNA-1
chr7_1 exon 62089909 62090205 62089909 ID=Msa1028890-mRNA-1:exon:13197;Parent=Msa1028890-mRNA-1
chr7_1 five_prime_UTR 62090062 62090205 62090062 ID=Msa1028890-mRNA-1:five_prime_utr;Parent=Msa1028890-mRNA-1
chr7_1 CDS 62089909 62090061 62089909 ID=Msa1028890-mRNA-1:cds;Parent=Msa1028890-mRNA-1
chr7_1 CDS 62088841 62089332 62088841 ID=Msa1028890-mRNA-1:cds;Parent=Msa1028890-mRNA-1
chr7_1 three_prime_UTR 62088584 62088840 62088584 ID=Msa1028890-mRNA-1:three_prime_utr;Parent=Msa1028890-mRNA-1
Gene Sequence

>Msa1028890

ATGGCAGCTGCTTCTCCTATGGCAAGCCAACTCAAGTCCAGCTTCACTAGACCTTTGGTCACACCTAGGGGACTTTGTGGCTCTTCCCCACTCCATCAGTTGCCTTCTAGAAGGCAATTTAACTTCACTGTTAAGGCAATCCAATCTGAAAAGCAAAATTACCAAGTGATTCAACCAATCAACGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCACTTGTTGCATGGTACCTCTCCAACTTACCAGGCTACAGAACTGCAGTGAACCCACTACTTAGGGGAATTGAAGTCGGCTTAGCCCATGGATTCTTCCTCGTAGGCCCGTTCGTTAAAGCCGGGCCTCTAAGGAACACCGAATATGCCGGATCAGCAGGCTCTCTTGCAGCTGCTGGGCTTGTTGTTATCCTCAGCATTTGCCTTACAATCTATGGAGTTTCATCATTCAATGAAGGTGATGCATCAACTGCTCCATCTTTGACCTTAACAGGCCGTAAGAAGCAGCCCGATCCGCTCCAAACAGCTGATGGTTGGTCCAAGTTCACTGGTGGGTTTTTCTTTGGTGGCATTTCTGGTGTTACCTGGGCTTACTTCCTTCTTTATGTTTTGGATCTTCCATACTTTGTTAAGTAA

Protein sequence

>Msa1028890

MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKQNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLVVILSICLTIYGVSSFNEGDASTAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK*