AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835050 MtrunA17_Chr5g0400431 99.398 166 1 0 1 166 1 166 1.08e-120 337
Msa0835050 MtrunA17_Chr4g0043711 59.880 167 54 3 1 166 1 155 2.23e-69 207
Msa0835050 MtrunA17_Chr7g0260591 66.038 53 16 1 64 114 3 55 9.13e-17 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835050 AT1G32470.1 83.133 166 28 0 1 166 1 166 4.86e-94 270
Msa0835050 AT2G35370.1 83.133 166 27 1 1 166 1 165 2.33e-89 258
Msa0835050 AT2G35120.1 58.929 168 55 3 1 166 1 156 1.58e-64 195

Find 56 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATTAATTTCAATATA+TGG 0.157093 5_4:+8323192 Msa0835050:exon
ATACATCCAAGATAATATTT+TGG 0.203698 5_4:+8321712 Msa0835050:five_prime_UTR
GTAACTGAACCGCCAGGTTC+TGG 0.305688 5_4:-8322592 None:intergenic
TGAAATTAATTTCAATATAT+GGG 0.339204 5_4:+8323193 Msa0835050:exon
ATCATCCATCCATCTTCATA+TGG 0.339685 5_4:-8323079 None:intergenic
GTTACAAAGGGTAACGGTTT+CGG 0.348504 5_4:+8322610 Msa0835050:CDS
AAACATCTGGAGATGGAAAA+AGG 0.352185 5_4:-8321949 None:intergenic
TCAACAATCTCACCAGATAT+TGG 0.373303 5_4:-8322673 None:intergenic
ATCTCCAGATGTTTCTCAAC+TGG 0.379569 5_4:+8321958 Msa0835050:CDS
TCTTGGAGAGGTTGTGTTTG+TGG 0.407524 5_4:+8322564 Msa0835050:CDS
CGGAGCTGTTGAAAGTGTTA+AGG 0.409242 5_4:+8322630 Msa0835050:CDS
GATGTAAACTCTCCAATATC+TGG 0.410884 5_4:+8322661 Msa0835050:CDS
ATCTGAATTAGAAGCCTTGT+TGG 0.425384 5_4:+8323123 Msa0835050:CDS
AAAATATTATCTTGGATGTA+TGG 0.426151 5_4:-8321710 None:intergenic
AGTATGCATCTTCACATGAA+TGG 0.426720 5_4:+8322082 Msa0835050:CDS
TAACAATGGCACTGAGGATG+TGG 0.446358 5_4:+8321863 Msa0835050:exon
AGAAGAGAGTTTGAGAGCAT+TGG 0.453540 5_4:-8321899 None:intergenic
GATAAGCTCACCGGAAAACC+TGG 0.464278 5_4:+8322703 Msa0835050:CDS
TGTTGGTTGCAGGACCATCT+TGG 0.467787 5_4:+8322547 Msa0835050:intron
GAAGGCTCAGTAGCCACTAT+TGG 0.468590 5_4:+8322114 Msa0835050:CDS
TGAAATTATGAGATAGATAG+AGG 0.482873 5_4:-8321771 None:intergenic
TCTGAATTAGAAGCCTTGTT+GGG 0.485713 5_4:+8323124 Msa0835050:CDS
TCATCCATCCATCTTCATAT+GGG 0.487407 5_4:-8323078 None:intergenic
GTATGCATCTTCACATGAAT+GGG 0.495142 5_4:+8322083 Msa0835050:CDS
GATACCAGTTGAGAAACATC+TGG 0.497324 5_4:-8321962 None:intergenic
AGAAGCCTTGTTGGGTGCAA+AGG 0.506140 5_4:+8323132 Msa0835050:CDS
AATGAATGAATTACCAGGCC+AGG 0.510526 5_4:-8322721 None:intergenic
TTTGTGGAGCTTCCAGAACC+TGG 0.512073 5_4:+8322580 Msa0835050:CDS
TCTAATTCAGATGGATCACT+TGG 0.513292 5_4:-8323112 None:intergenic
TGGTATCACTGACCATGCTC+AGG 0.528384 5_4:+8322134 Msa0835050:CDS
GCTCACCGGAAAACCTGGCC+TGG 0.529026 5_4:+8322708 Msa0835050:CDS
AACTCAAGCCCATATGAAGA+TGG 0.530377 5_4:+8323070 Msa0835050:CDS
AGGGGAGAGATGTAATCTTG+AGG 0.555174 5_4:-8321926 None:intergenic
CATGAATGGGTGAAGCATGA+AGG 0.562003 5_4:+8322096 Msa0835050:CDS
CCCTTTGTAACTGAACCGCC+AGG 0.564034 5_4:-8322598 None:intergenic
CAAGCCCATATGAAGATGGA+TGG 0.567565 5_4:+8323074 Msa0835050:CDS
AACAAGGCTTCTAATTCAGA+TGG 0.567704 5_4:-8323121 None:intergenic
ACCTGGCGGTTCAGTTACAA+AGG 0.580268 5_4:+8322597 Msa0835050:CDS
AGTTGAGAAACATCTGGAGA+TGG 0.581853 5_4:-8321956 None:intergenic
GTTGCAGGACCATCTTGGAG+AGG 0.582318 5_4:+8322552 Msa0835050:intron
GGTTCAGTTACAAAGGGTAA+CGG 0.588941 5_4:+8322604 Msa0835050:CDS
CAAACACAACCTCTCCAAGA+TGG 0.593260 5_4:-8322561 None:intergenic
GAGGTTAATGATAAGCTCAC+CGG 0.595144 5_4:+8322694 Msa0835050:CDS
AATATCTGGTGAGATTGTTG+AGG 0.595757 5_4:+8322675 Msa0835050:CDS
AACAATGGCACTGAGGATGT+GGG 0.614850 5_4:+8321864 Msa0835050:exon
CCTGGCGGTTCAGTTACAAA+GGG 0.619186 5_4:+8322598 Msa0835050:CDS
TGTCGGTAACAATAATAGCA+AGG 0.624071 5_4:-8323303 None:intergenic
ATGGTCAGTGATACCAATAG+TGG 0.628719 5_4:-8322127 None:intergenic
GTACTCCTTTGCACCCAACA+AGG 0.634212 5_4:-8323137 None:intergenic
GTGTTGGTGTAAAGTAAAAG+AGG 0.635428 5_4:+8321647 None:intergenic
GAGTGCACAAATAAAAGATG+AGG 0.636975 5_4:+8321674 Msa0835050:five_prime_UTR
AGCAAAAGTAGTCTTAACAA+TGG 0.640990 5_4:+8321849 Msa0835050:exon
GCAGTTAACTAACCTGAGCA+TGG 0.648601 5_4:-8322146 None:intergenic
AGACTGACACACTAAAGTGT+CGG 0.671974 5_4:-8323320 None:intergenic
GTGGAGCTTCCAGAACCTGG+CGG 0.691995 5_4:+8322583 Msa0835050:CDS
TAGTCTTAACAATGGCACTG+AGG 0.723094 5_4:+8321857 Msa0835050:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATTAATTTCAATATA+TGG + chr5_4:8323192-8323211 Msa0835050:exon 10.0%
!! TGAAATTAATTTCAATATAT+GGG + chr5_4:8323193-8323212 Msa0835050:exon 10.0%
!! TTGAAATTAATTTCAATATA+TGG + chr5_4:8323192-8323211 Msa0835050:exon 10.0%
!! TGAAATTAATTTCAATATAT+GGG + chr5_4:8323193-8323212 Msa0835050:exon 10.0%
!! AAAATATTATCTTGGATGTA+TGG - chr5_4:8321713-8321732 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG + chr5_4:8321712-8321731 Msa0835050:five_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG + chr5_4:8321713-8321732 Msa0835050:five_prime_UTR 20.0%
!!! TAAATAAATTTTTGCAGTGT+TGG + chr5_4:8322050-8322069 Msa0835050:intron 20.0%
!! TGAATTAGACTTTAATTACT+AGG + chr5_4:8322358-8322377 Msa0835050:intron 20.0%
!! GTACATTTATGAAAAATAAG+CGG + chr5_4:8322888-8322907 Msa0835050:intron 20.0%
!! AAAATATTATCTTGGATGTA+TGG - chr5_4:8321713-8321732 None:intergenic 20.0%
!!! ATACATCCAAGATAATATTT+TGG + chr5_4:8321712-8321731 Msa0835050:five_prime_UTR 20.0%
!!! TACATCCAAGATAATATTTT+GGG + chr5_4:8321713-8321732 Msa0835050:five_prime_UTR 20.0%
!!! TAAATAAATTTTTGCAGTGT+TGG + chr5_4:8322050-8322069 Msa0835050:intron 20.0%
!! TGAATTAGACTTTAATTACT+AGG + chr5_4:8322358-8322377 Msa0835050:intron 20.0%
!! GTACATTTATGAAAAATAAG+CGG + chr5_4:8322888-8322907 Msa0835050:intron 20.0%
!! CTTTTCCCAAAATATTATCT+TGG - chr5_4:8321721-8321740 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG + chr5_4:8321719-8321738 Msa0835050:five_prime_UTR 25.0%
! TGAAATTATGAGATAGATAG+AGG - chr5_4:8321774-8321793 None:intergenic 25.0%
!!! TATACGAATTAGTCTGTTTT+TGG + chr5_4:8322257-8322276 Msa0835050:intron 25.0%
!!! ATACGAATTAGTCTGTTTTT+GGG + chr5_4:8322258-8322277 Msa0835050:intron 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG - chr5_4:8322458-8322477 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG + chr5_4:8322499-8322518 Msa0835050:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG + chr5_4:8322530-8322549 Msa0835050:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG + chr5_4:8322741-8322760 Msa0835050:intron 25.0%
!! CTTTTCCCAAAATATTATCT+TGG - chr5_4:8321721-8321740 None:intergenic 25.0%
!!! CAAGATAATATTTTGGGAAA+AGG + chr5_4:8321719-8321738 Msa0835050:five_prime_UTR 25.0%
! TGAAATTATGAGATAGATAG+AGG - chr5_4:8321774-8321793 None:intergenic 25.0%
!!! TATACGAATTAGTCTGTTTT+TGG + chr5_4:8322257-8322276 Msa0835050:intron 25.0%
!!! ATACGAATTAGTCTGTTTTT+GGG + chr5_4:8322258-8322277 Msa0835050:intron 25.0%
!! GCTAGTATTTTATCTTTTGT+CGG - chr5_4:8322458-8322477 None:intergenic 25.0%
! AATCATTACAACTTAAGTGA+AGG + chr5_4:8322499-8322518 Msa0835050:intron 25.0%
! GTTTAATTAATTGCACTTGT+TGG + chr5_4:8322530-8322549 Msa0835050:intron 25.0%
!!! ATTAACTCACTCTCATTTTT+AGG + chr5_4:8322741-8322760 Msa0835050:intron 25.0%
! AGCAAAAGTAGTCTTAACAA+TGG + chr5_4:8321849-8321868 Msa0835050:exon 30.0%
! AAAAGGAGGGTATATATGAA+AGG - chr5_4:8321987-8322006 None:intergenic 30.0%
CATTCAACTTGATAGGAAAA+AGG - chr5_4:8322004-8322023 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG + chr5_4:8322054-8322073 Msa0835050:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG - chr5_4:8322181-8322200 None:intergenic 30.0%
ATTGAGCTAAGAGTTAAATG+AGG + chr5_4:8322411-8322430 Msa0835050:intron 30.0%
GAGTTAATGAATGAATTACC+AGG - chr5_4:8322729-8322748 None:intergenic 30.0%
! AGCAAAAGTAGTCTTAACAA+TGG + chr5_4:8321849-8321868 Msa0835050:exon 30.0%
! AAAAGGAGGGTATATATGAA+AGG - chr5_4:8321987-8322006 None:intergenic 30.0%
CATTCAACTTGATAGGAAAA+AGG - chr5_4:8322004-8322023 None:intergenic 30.0%
!! TAAATTTTTGCAGTGTTGGA+TGG + chr5_4:8322054-8322073 Msa0835050:intron 30.0%
ACATATTGTGGAGAATGTTA+AGG - chr5_4:8322181-8322200 None:intergenic 30.0%
ATTGAGCTAAGAGTTAAATG+AGG + chr5_4:8322411-8322430 Msa0835050:intron 30.0%
GAGTTAATGAATGAATTACC+AGG - chr5_4:8322729-8322748 None:intergenic 30.0%
GAGTGCACAAATAAAAGATG+AGG + chr5_4:8321674-8321693 Msa0835050:five_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG - chr5_4:8321952-8321971 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG - chr5_4:8322000-8322019 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG - chr5_4:8322001-8322020 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG - chr5_4:8322011-8322030 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG + chr5_4:8322008-8322027 Msa0835050:intron 35.0%
AGTATGCATCTTCACATGAA+TGG + chr5_4:8322082-8322101 Msa0835050:CDS 35.0%
GTATGCATCTTCACATGAAT+GGG + chr5_4:8322083-8322102 Msa0835050:CDS 35.0%
!!! GAATTAGTCTGTTTTTGGGT+CGG + chr5_4:8322262-8322281 Msa0835050:intron 35.0%
GATGTAAACTCTCCAATATC+TGG + chr5_4:8322661-8322680 Msa0835050:CDS 35.0%
TCAACAATCTCACCAGATAT+TGG - chr5_4:8322676-8322695 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG + chr5_4:8322675-8322694 Msa0835050:CDS 35.0%
TGAAGACATAAGTGAACTAG+AGG + chr5_4:8322864-8322883 Msa0835050:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG + chr5_4:8322865-8322884 Msa0835050:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG + chr5_4:8322866-8322885 Msa0835050:intron 35.0%
TCATCCATCCATCTTCATAT+GGG - chr5_4:8323081-8323100 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG - chr5_4:8323082-8323101 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG - chr5_4:8323115-8323134 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG - chr5_4:8323124-8323143 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG + chr5_4:8323123-8323142 Msa0835050:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG + chr5_4:8323124-8323143 Msa0835050:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG + chr5_4:8323153-8323172 Msa0835050:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG - chr5_4:8323306-8323325 None:intergenic 35.0%
GAGTGCACAAATAAAAGATG+AGG + chr5_4:8321674-8321693 Msa0835050:five_prime_UTR 35.0%
AAACATCTGGAGATGGAAAA+AGG - chr5_4:8321952-8321971 None:intergenic 35.0%
CAACTTGATAGGAAAAAGGA+GGG - chr5_4:8322000-8322019 None:intergenic 35.0%
TCAACTTGATAGGAAAAAGG+AGG - chr5_4:8322001-8322020 None:intergenic 35.0%
CCACATTCATTCAACTTGAT+AGG - chr5_4:8322011-8322030 None:intergenic 35.0%
!! CCTATCAAGTTGAATGAATG+TGG + chr5_4:8322008-8322027 Msa0835050:intron 35.0%
AGTATGCATCTTCACATGAA+TGG + chr5_4:8322082-8322101 Msa0835050:CDS 35.0%
GTATGCATCTTCACATGAAT+GGG + chr5_4:8322083-8322102 Msa0835050:CDS 35.0%
!!! GAATTAGTCTGTTTTTGGGT+CGG + chr5_4:8322262-8322281 Msa0835050:intron 35.0%
GATGTAAACTCTCCAATATC+TGG + chr5_4:8322661-8322680 Msa0835050:CDS 35.0%
TCAACAATCTCACCAGATAT+TGG - chr5_4:8322676-8322695 None:intergenic 35.0%
AATATCTGGTGAGATTGTTG+AGG + chr5_4:8322675-8322694 Msa0835050:CDS 35.0%
TGAAGACATAAGTGAACTAG+AGG + chr5_4:8322864-8322883 Msa0835050:intron 35.0%
GAAGACATAAGTGAACTAGA+GGG + chr5_4:8322865-8322884 Msa0835050:intron 35.0%
AAGACATAAGTGAACTAGAG+GGG + chr5_4:8322866-8322885 Msa0835050:intron 35.0%
TCATCCATCCATCTTCATAT+GGG - chr5_4:8323081-8323100 None:intergenic 35.0%
ATCATCCATCCATCTTCATA+TGG - chr5_4:8323082-8323101 None:intergenic 35.0%
TCTAATTCAGATGGATCACT+TGG - chr5_4:8323115-8323134 None:intergenic 35.0%
AACAAGGCTTCTAATTCAGA+TGG - chr5_4:8323124-8323143 None:intergenic 35.0%
! ATCTGAATTAGAAGCCTTGT+TGG + chr5_4:8323123-8323142 Msa0835050:CDS 35.0%
!! TCTGAATTAGAAGCCTTGTT+GGG + chr5_4:8323124-8323143 Msa0835050:CDS 35.0%
! GGAGTACACAAAATTTTGTG+AGG + chr5_4:8323153-8323172 Msa0835050:CDS 35.0%
TGTCGGTAACAATAATAGCA+AGG - chr5_4:8323306-8323325 None:intergenic 35.0%
! TAGTCTTAACAATGGCACTG+AGG + chr5_4:8321857-8321876 Msa0835050:exon 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG - chr5_4:8321902-8321921 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG - chr5_4:8321948-8321967 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG - chr5_4:8321959-8321978 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG + chr5_4:8321958-8321977 Msa0835050:CDS 40.0%
GATACCAGTTGAGAAACATC+TGG - chr5_4:8321965-8321984 None:intergenic 40.0%
ATGGTCAGTGATACCAATAG+TGG - chr5_4:8322130-8322149 None:intergenic 40.0%
TGGAGAATGTTAAGGAGTAG+AGG - chr5_4:8322173-8322192 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG - chr5_4:8322233-8322252 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG - chr5_4:8322234-8322253 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG - chr5_4:8322235-8322254 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG + chr5_4:8322537-8322556 Msa0835050:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG + chr5_4:8322604-8322623 Msa0835050:CDS 40.0%
! GTTACAAAGGGTAACGGTTT+CGG + chr5_4:8322610-8322629 Msa0835050:CDS 40.0%
GAGGTTAATGATAAGCTCAC+CGG + chr5_4:8322694-8322713 Msa0835050:CDS 40.0%
AATGAATGAATTACCAGGCC+AGG - chr5_4:8322724-8322743 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG + chr5_4:8323070-8323089 Msa0835050:CDS 40.0%
AGACTGACACACTAAAGTGT+CGG - chr5_4:8323323-8323342 None:intergenic 40.0%
! TAGTCTTAACAATGGCACTG+AGG + chr5_4:8321857-8321876 Msa0835050:exon 40.0%
! AGAAGAGAGTTTGAGAGCAT+TGG - chr5_4:8321902-8321921 None:intergenic 40.0%
ATCTGGAGATGGAAAAAGGA+GGG - chr5_4:8321948-8321967 None:intergenic 40.0%
AGTTGAGAAACATCTGGAGA+TGG - chr5_4:8321959-8321978 None:intergenic 40.0%
ATCTCCAGATGTTTCTCAAC+TGG + chr5_4:8321958-8321977 Msa0835050:CDS 40.0%
GATACCAGTTGAGAAACATC+TGG - chr5_4:8321965-8321984 None:intergenic 40.0%
ATGGTCAGTGATACCAATAG+TGG - chr5_4:8322130-8322149 None:intergenic 40.0%
TGGAGAATGTTAAGGAGTAG+AGG - chr5_4:8322173-8322192 None:intergenic 40.0%
AATCTCACAGTTCACTTGTG+GGG - chr5_4:8322233-8322252 None:intergenic 40.0%
CAATCTCACAGTTCACTTGT+GGG - chr5_4:8322234-8322253 None:intergenic 40.0%
TCAATCTCACAGTTCACTTG+TGG - chr5_4:8322235-8322254 None:intergenic 40.0%
! TAATTGCACTTGTTGGTTGC+AGG + chr5_4:8322537-8322556 Msa0835050:intron 40.0%
GGTTCAGTTACAAAGGGTAA+CGG + chr5_4:8322604-8322623 Msa0835050:CDS 40.0%
! GTTACAAAGGGTAACGGTTT+CGG + chr5_4:8322610-8322629 Msa0835050:CDS 40.0%
GAGGTTAATGATAAGCTCAC+CGG + chr5_4:8322694-8322713 Msa0835050:CDS 40.0%
AATGAATGAATTACCAGGCC+AGG - chr5_4:8322724-8322743 None:intergenic 40.0%
AACTCAAGCCCATATGAAGA+TGG + chr5_4:8323070-8323089 Msa0835050:CDS 40.0%
AGACTGACACACTAAAGTGT+CGG - chr5_4:8323323-8323342 None:intergenic 40.0%
! TAACAATGGCACTGAGGATG+TGG + chr5_4:8321863-8321882 Msa0835050:exon 45.0%
! AACAATGGCACTGAGGATGT+GGG + chr5_4:8321864-8321883 Msa0835050:exon 45.0%
AGGGGAGAGATGTAATCTTG+AGG - chr5_4:8321929-8321948 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG - chr5_4:8321947-8321966 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG - chr5_4:8321949-8321968 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG + chr5_4:8322096-8322115 Msa0835050:CDS 45.0%
GCAGTTAACTAACCTGAGCA+TGG - chr5_4:8322149-8322168 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG - chr5_4:8322193-8322212 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG + chr5_4:8322206-8322225 Msa0835050:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG - chr5_4:8322232-8322251 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG - chr5_4:8322564-8322583 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG + chr5_4:8322564-8322583 Msa0835050:CDS 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG + chr5_4:8322630-8322649 Msa0835050:CDS 45.0%
! AATTACCAGGCCAGGTTTTC+CGG - chr5_4:8322716-8322735 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG + chr5_4:8323074-8323093 Msa0835050:CDS 45.0%
! TAACAATGGCACTGAGGATG+TGG + chr5_4:8321863-8321882 Msa0835050:exon 45.0%
! AACAATGGCACTGAGGATGT+GGG + chr5_4:8321864-8321883 Msa0835050:exon 45.0%
AGGGGAGAGATGTAATCTTG+AGG - chr5_4:8321929-8321948 None:intergenic 45.0%
TCTGGAGATGGAAAAAGGAG+GGG - chr5_4:8321947-8321966 None:intergenic 45.0%
CATCTGGAGATGGAAAAAGG+AGG - chr5_4:8321949-8321968 None:intergenic 45.0%
CATGAATGGGTGAAGCATGA+AGG + chr5_4:8322096-8322115 Msa0835050:CDS 45.0%
GCAGTTAACTAACCTGAGCA+TGG - chr5_4:8322149-8322168 None:intergenic 45.0%
CGCTTTGCATGGACATATTG+TGG - chr5_4:8322193-8322212 None:intergenic 45.0%
!! CAAAGCGCTCTGGCTTTAAA+TGG + chr5_4:8322206-8322225 Msa0835050:intron 45.0%
ATCTCACAGTTCACTTGTGG+GGG - chr5_4:8322232-8322251 None:intergenic 45.0%
CAAACACAACCTCTCCAAGA+TGG - chr5_4:8322564-8322583 None:intergenic 45.0%
TCTTGGAGAGGTTGTGTTTG+TGG + chr5_4:8322564-8322583 Msa0835050:CDS 45.0%
!! CGGAGCTGTTGAAAGTGTTA+AGG + chr5_4:8322630-8322649 Msa0835050:CDS 45.0%
! AATTACCAGGCCAGGTTTTC+CGG - chr5_4:8322716-8322735 None:intergenic 45.0%
CAAGCCCATATGAAGATGGA+TGG + chr5_4:8323074-8323093 Msa0835050:CDS 45.0%
GAAGGCTCAGTAGCCACTAT+TGG + chr5_4:8322114-8322133 Msa0835050:CDS 50.0%
TGGTATCACTGACCATGCTC+AGG + chr5_4:8322134-8322153 Msa0835050:CDS 50.0%
! TATGTCCATGCAAAGCGCTC+TGG + chr5_4:8322196-8322215 Msa0835050:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG - chr5_4:8322204-8322223 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG + chr5_4:8322547-8322566 Msa0835050:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG + chr5_4:8322580-8322599 Msa0835050:CDS 50.0%
ACCTGGCGGTTCAGTTACAA+AGG + chr5_4:8322597-8322616 Msa0835050:CDS 50.0%
CCTGGCGGTTCAGTTACAAA+GGG + chr5_4:8322598-8322617 Msa0835050:CDS 50.0%
GATAAGCTCACCGGAAAACC+TGG + chr5_4:8322703-8322722 Msa0835050:CDS 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG + chr5_4:8323132-8323151 Msa0835050:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG - chr5_4:8323140-8323159 None:intergenic 50.0%
GAAGGCTCAGTAGCCACTAT+TGG + chr5_4:8322114-8322133 Msa0835050:CDS 50.0%
TGGTATCACTGACCATGCTC+AGG + chr5_4:8322134-8322153 Msa0835050:CDS 50.0%
! TATGTCCATGCAAAGCGCTC+TGG + chr5_4:8322196-8322215 Msa0835050:intron 50.0%
! TAAAGCCAGAGCGCTTTGCA+TGG - chr5_4:8322204-8322223 None:intergenic 50.0%
! TGTTGGTTGCAGGACCATCT+TGG + chr5_4:8322547-8322566 Msa0835050:intron 50.0%
TTTGTGGAGCTTCCAGAACC+TGG + chr5_4:8322580-8322599 Msa0835050:CDS 50.0%
ACCTGGCGGTTCAGTTACAA+AGG + chr5_4:8322597-8322616 Msa0835050:CDS 50.0%
CCTGGCGGTTCAGTTACAAA+GGG + chr5_4:8322598-8322617 Msa0835050:CDS 50.0%
GATAAGCTCACCGGAAAACC+TGG + chr5_4:8322703-8322722 Msa0835050:CDS 50.0%
!! AGAAGCCTTGTTGGGTGCAA+AGG + chr5_4:8323132-8323151 Msa0835050:CDS 50.0%
GTACTCCTTTGCACCCAACA+AGG - chr5_4:8323140-8323159 None:intergenic 50.0%
GTTGCAGGACCATCTTGGAG+AGG + chr5_4:8322552-8322571 Msa0835050:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG - chr5_4:8322595-8322614 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG - chr5_4:8322601-8322620 None:intergenic 55.0%
GTTGCAGGACCATCTTGGAG+AGG + chr5_4:8322552-8322571 Msa0835050:intron 55.0%
GTAACTGAACCGCCAGGTTC+TGG - chr5_4:8322595-8322614 None:intergenic 55.0%
CCCTTTGTAACTGAACCGCC+AGG - chr5_4:8322601-8322620 None:intergenic 55.0%
GTGGAGCTTCCAGAACCTGG+CGG + chr5_4:8322583-8322602 Msa0835050:CDS 60.0%
GTGGAGCTTCCAGAACCTGG+CGG + chr5_4:8322583-8322602 Msa0835050:CDS 60.0%
GCTCACCGGAAAACCTGGCC+TGG + chr5_4:8322708-8322727 Msa0835050:CDS 65.0%
GCTCACCGGAAAACCTGGCC+TGG + chr5_4:8322708-8322727 Msa0835050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8321660 8323382 8321660 ID=Msa0835050;Name=Msa0835050
chr5_4 mRNA 8321660 8323382 8321660 ID=Msa0835050-mRNA-1;Parent=Msa0835050;Name=Msa0835050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=187|1|1|1|0.75|0.6|5|187|166
chr5_4 exon 8321660 8321816 8321660 ID=Msa0835050-mRNA-1:exon:3668;Parent=Msa0835050-mRNA-1
chr5_4 exon 8321838 8321979 8321838 ID=Msa0835050-mRNA-1:exon:3669;Parent=Msa0835050-mRNA-1
chr5_4 exon 8322067 8322155 8322067 ID=Msa0835050-mRNA-1:exon:3670;Parent=Msa0835050-mRNA-1
chr5_4 exon 8322559 8322729 8322559 ID=Msa0835050-mRNA-1:exon:3671;Parent=Msa0835050-mRNA-1
chr5_4 exon 8323067 8323382 8323067 ID=Msa0835050-mRNA-1:exon:3672;Parent=Msa0835050-mRNA-1
chr5_4 five_prime_UTR 8321660 8321816 8321660 ID=Msa0835050-mRNA-1:five_prime_utr;Parent=Msa0835050-mRNA-1
chr5_4 five_prime_UTR 8321838 8321867 8321838 ID=Msa0835050-mRNA-1:five_prime_utr;Parent=Msa0835050-mRNA-1
chr5_4 CDS 8321868 8321979 8321868 ID=Msa0835050-mRNA-1:cds;Parent=Msa0835050-mRNA-1
chr5_4 CDS 8322067 8322155 8322067 ID=Msa0835050-mRNA-1:cds;Parent=Msa0835050-mRNA-1
chr5_4 CDS 8322559 8322729 8322559 ID=Msa0835050-mRNA-1:cds;Parent=Msa0835050-mRNA-1
chr5_4 CDS 8323067 8323195 8323067 ID=Msa0835050-mRNA-1:cds;Parent=Msa0835050-mRNA-1
chr5_4 three_prime_UTR 8323196 8323382 8323196 ID=Msa0835050-mRNA-1:three_prime_utr;Parent=Msa0835050-mRNA-1
Gene Sequence

>Msa0835050

ATGGCACTGAGGATGTGGGCTTCTTCAACTGCCAATGCTCTCAAACTCTCTTCTTCTTCCTCAAGATTACATCTCTCCCCTCCTTTTTCCATCTCCAGATGTTTCTCAACTGTGTTGGATGGACTCAAGTATGCATCTTCACATGAATGGGTGAAGCATGAAGGCTCAGTAGCCACTATTGGTATCACTGACCATGCTCAGGACCATCTTGGAGAGGTTGTGTTTGTGGAGCTTCCAGAACCTGGCGGTTCAGTTACAAAGGGTAACGGTTTCGGAGCTGTTGAAAGTGTTAAGGCAACAAGTGATGTAAACTCTCCAATATCTGGTGAGATTGTTGAGGTTAATGATAAGCTCACCGGAAAACCTGGCCTGATCAACTCAAGCCCATATGAAGATGGATGGATGATCAAAATAAAGCCAAGTGATCCATCTGAATTAGAAGCCTTGTTGGGTGCAAAGGAGTACACAAAATTTTGTGAGGAAGAAGATGCTGCACATTGA

Protein sequence

>Msa0835050

MALRMWASSTANALKLSSSSSRLHLSPPFSISRCFSTVLDGLKYASSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGGSVTKGNGFGAVESVKATSDVNSPISGEIVEVNDKLTGKPGLINSSPYEDGWMIKIKPSDPSELEALLGAKEYTKFCEEEDAAH*