AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662230 MtrunA17_Chr4g0034751 96.350 274 10 0 1 274 1 274 0.0 553
Msa0662230 MtrunA17_Chr7g0270061 47.929 169 88 0 102 270 111 279 2.90e-51 170
Msa0662230 MtrunA17_Chr1g0194601 46.746 169 90 0 102 270 114 282 3.75e-49 164
Msa0662230 MtrunA17_Chr5g0409311 39.894 188 113 0 86 273 75 262 2.96e-47 159
Msa0662230 MtrunA17_Chr7g0251451 43.103 174 99 0 98 271 78 251 1.08e-45 155
Msa0662230 MtrunA17_Chr4g0038261 40.000 175 105 0 97 271 43 217 1.09e-43 148
Msa0662230 MtrunA17_Chr4g0056771 33.333 183 118 1 93 271 85 267 1.80e-32 120
Msa0662230 MtrunA17_Chr4g0055551 33.333 183 114 1 99 273 104 286 3.36e-24 99.0
Msa0662230 MtrunA17_Chr4g0015831 41.584 101 59 0 98 198 21 121 9.08e-24 93.2
Msa0662230 MtrunA17_CPg0492721 41.584 101 59 0 98 198 21 121 9.08e-24 93.2
Msa0662230 MtrunA17_Chr7g0272191 33.908 174 104 3 108 270 119 292 2.35e-23 97.1
Msa0662230 MtrunA17_Chr1g0184041 42.683 82 47 0 113 194 100 181 9.35e-17 76.3
Msa0662230 MtrunA17_Chr1g0207341 26.630 184 125 2 99 272 155 338 2.54e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662230 AT1G11750.1 68.116 276 81 3 1 274 1 271 2.02e-136 386
Msa0662230 AT1G11750.2 65.398 289 85 3 1 274 1 289 1.88e-134 382
Msa0662230 AT1G02560.1 46.154 169 91 0 102 270 117 285 3.65e-48 162
Msa0662230 AT1G66670.1 43.103 174 99 0 98 271 84 257 2.24e-45 155
Msa0662230 AT5G45390.1 37.853 177 110 0 95 271 75 251 5.01e-43 149
Msa0662230 AT5G23140.1 40.000 175 105 0 97 271 46 220 1.45e-42 146
Msa0662230 AT1G12410.1 35.838 173 111 0 98 270 88 260 1.76e-34 126
Msa0662230 ATCG00670.1 32.948 173 115 1 98 269 21 193 1.33e-32 119
Msa0662230 AT4G17040.1 32.787 183 115 1 99 273 105 287 1.26e-31 119
Msa0662230 AT1G09130.2 35.519 183 107 3 99 270 121 303 1.98e-29 114
Msa0662230 AT1G09130.1 35.519 183 107 3 99 270 121 303 1.98e-29 114
Msa0662230 AT1G09130.3 35.519 183 107 3 99 270 121 303 4.52e-29 114
Msa0662230 AT1G49970.1 27.027 185 125 2 99 273 171 355 3.09e-17 81.3

Find 88 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAGGCTTTGGAGTT+TGG 0.250950 4_3:+74184655 Msa0662230:intron
ATTGACAATGTGAAGTAGTT+TGG 0.264333 4_3:-74184923 None:intergenic
AATCAACCACAATGTGGATA+TGG 0.278581 4_3:+74182120 Msa0662230:CDS
AGAATTTGAGATTAGATAGA+TGG 0.298287 4_3:+74180100 Msa0662230:five_prime_UTR
TTGGAGTTTGGTCTTATTGA+TGG 0.304151 4_3:+74184667 Msa0662230:CDS
TTGACAATGTGAAGTAGTTT+GGG 0.318141 4_3:-74184922 None:intergenic
GAAGTAGTTTGGGGTATAAC+TGG 0.326493 4_3:-74184912 None:intergenic
AGTTAATGTCAATTTGATAA+TGG 0.341856 4_3:+74184984 Msa0662230:three_prime_UTR
GTCATGATAGCTGGTGTTAT+TGG 0.353594 4_3:-74181516 None:intergenic
ATGGTGAAGGTGGGAGTTGC+AGG 0.355066 4_3:-74180213 None:intergenic
TGATCCAGATGCAGATATAA+TGG 0.359251 4_3:+74181662 Msa0662230:CDS
GATTAGATAGATGGAATAAA+AGG 0.364115 4_3:+74180109 Msa0662230:five_prime_UTR
CCCTGGTGGAAGCACTTATT+CGG 0.393075 4_3:+74181792 Msa0662230:CDS
AGATTCAATACTCTGTTTCC+AGG 0.396606 4_3:-74184693 None:intergenic
CAAGGAACACTTCTCCTTGC+CGG 0.401602 4_3:+74182048 Msa0662230:CDS
TTCATCATAATGCGAGCATT+TGG 0.412758 4_3:-74182099 None:intergenic
AAACATACTGTACCAACCTT+TGG 0.421332 4_3:-74182009 None:intergenic
CAATTTATGATTGCATGTCT+TGG 0.426577 4_3:+74181821 Msa0662230:CDS
ATTAACTGCGCCACTTTAGC+AGG 0.426652 4_3:-74184968 None:intergenic
CAAACCATTATATCTGCATC+TGG 0.434951 4_3:-74181666 None:intergenic
ATCAACCACAATGTGGATAT+GGG 0.440932 4_3:+74182121 Msa0662230:CDS
CAAGAAAGAGCCTGCTAAAG+TGG 0.443383 4_3:+74184958 Msa0662230:three_prime_UTR
TGAGCCACTTGTGAGTTAAC+TGG 0.446998 4_3:-74181603 None:intergenic
TATTGGCGGGTTCCCCGTCT+TGG 0.448456 4_3:-74181499 None:intergenic
TCTCCTTGCCGGTGGGGAGA+AGG 0.458468 4_3:+74182059 Msa0662230:CDS
TCTTCCTTGCAAAGCCCCTA+TGG 0.461392 4_3:+74180380 Msa0662230:CDS
TATGGTAGTTCTTCTCAAAT+CGG 0.473212 4_3:+74180398 Msa0662230:CDS
AGGAATCGTATAATATTCAT+AGG 0.474892 4_3:+74181576 Msa0662230:CDS
TATATCGCAGCTTGTGACTC+TGG 0.483356 4_3:+74181632 Msa0662230:CDS
AATTTATGATTGCATGTCTT+GGG 0.491253 4_3:+74181822 Msa0662230:CDS
AAGATGTTCAGTGCTTTCAC+TGG 0.493292 4_3:+74183527 Msa0662230:CDS
ATGATAGCTGGTGTTATTGG+CGG 0.494864 4_3:-74181513 None:intergenic
TGTGTAATAACGCCTTGTTT+TGG 0.496140 4_3:+74180139 Msa0662230:five_prime_UTR
CTCCTTGCCGGTGGGGAGAA+GGG 0.497877 4_3:+74182060 Msa0662230:CDS
CGGCAAGGAGAAGTGTTCCT+TGG 0.498121 4_3:-74182047 None:intergenic
TGATAGCTGGTGTTATTGGC+GGG 0.501907 4_3:-74181512 None:intergenic
AAGGTTGGTACAGTATGTTT+CGG 0.503063 4_3:+74182012 Msa0662230:CDS
ACACCAGCTATCATGACTCC+TGG 0.503870 4_3:+74181522 Msa0662230:CDS
TGGTCTTATTGATGGTGTCC+TGG 0.508407 4_3:+74184675 Msa0662230:CDS
ACTGGATTCTTAAATCAAAA+CGG 0.511042 4_3:-74184894 None:intergenic
ACCGAATAAGTGCTTCCACC+AGG 0.511860 4_3:-74181793 None:intergenic
GAGAGATCAAGAGCTCCTCC+AGG 0.521114 4_3:-74181540 None:intergenic
CCTCCAGGAGTCATGATAGC+TGG 0.521187 4_3:-74181525 None:intergenic
TTCCCTTCTCCCCACCGGCA+AGG 0.541555 4_3:-74182062 None:intergenic
TGAGAAAACGTAAGTTGAGA+AGG 0.541998 4_3:-74180255 None:intergenic
CGGTGTAATTGAAGCCAAGA+CGG 0.544571 4_3:+74181485 Msa0662230:CDS
GGTGTAATTGAAGCCAAGAC+GGG 0.551793 4_3:+74181486 Msa0662230:CDS
CTTAAATCAAAACGGAAACA+AGG 0.557821 4_3:-74184859 None:intergenic
GTAAGTTGACTTTCATAGAA+CGG 0.558902 4_3:+74184795 Msa0662230:three_prime_UTR
TTTCAGATAAAGCCAAAGGT+TGG 0.559455 4_3:+74181997 Msa0662230:intron
GCGCATTCCCTTCTCCCCAC+CGG 0.570395 4_3:-74182067 None:intergenic
CTTACCCCATATCCACATTG+TGG 0.574250 4_3:-74182126 None:intergenic
GATTTGAGAAGAACTACCAT+AGG 0.577205 4_3:-74180396 None:intergenic
GATTCTTCTGTGAGAAGCGA+TGG 0.577304 4_3:-74180232 None:intergenic
ATTTGAGAAGAACTACCATA+GGG 0.578078 4_3:-74180395 None:intergenic
GAACACTTCTCCTTGCCGGT+GGG 0.588591 4_3:+74182052 Msa0662230:CDS
CACTGGACAGACATTAGAGA+AGG 0.591851 4_3:+74183544 Msa0662230:CDS
GGAAGAAAGACTAACATGGC+GGG 0.596977 4_3:-74182837 None:intergenic
AACACTTCTCCTTGCCGGTG+GGG 0.597362 4_3:+74182053 Msa0662230:CDS
GGCTTATCAAGTAAAACCCA+TGG 0.598446 4_3:+74180810 Msa0662230:intron
CAGATGTATATAAATTGCCC+TGG 0.599214 4_3:+74181775 Msa0662230:intron
TCGCGTGAAGCTCCAAAACA+AGG 0.599276 4_3:-74180151 None:intergenic
GGAACACTTCTCCTTGCCGG+TGG 0.600384 4_3:+74182051 Msa0662230:CDS
GTACACATGATGTTGGTACA+AGG 0.602280 4_3:+74180859 Msa0662230:CDS
GAGAAAACGTAAGTTGAGAA+GGG 0.606921 4_3:-74180254 None:intergenic
GTGAGAAGCGATGGTGAAGG+TGG 0.617082 4_3:-74180223 None:intergenic
TTAAATCAAAACGGAAACAA+GGG 0.617984 4_3:-74184858 None:intergenic
AAGGAAGAAGATATCGTGCA+AGG 0.618347 4_3:-74180365 None:intergenic
AGGAAGAAGATATCGTGCAA+GGG 0.624121 4_3:-74180364 None:intergenic
TCAACCACAATGTGGATATG+GGG 0.624507 4_3:+74182122 Msa0662230:CDS
ATGTATATAAATTGCCCTGG+TGG 0.625092 4_3:+74181778 Msa0662230:CDS
TGACAATGTGAAGTAGTTTG+GGG 0.627479 4_3:-74184921 None:intergenic
TTCGGAGTAGCTGCAAGCCA+AGG 0.633505 4_3:+74182030 Msa0662230:CDS
GAGAAAAGTACACATGATGT+TGG 0.647062 4_3:+74180852 Msa0662230:CDS
CCGAATAAGTGCTTCCACCA+GGG 0.650767 4_3:-74181792 None:intergenic
ATATTCATTCATGACTCATG+AGG 0.657188 4_3:-74184762 None:intergenic
GGTGCAAGAGTACACAGAGA+GGG 0.660689 4_3:+74183565 Msa0662230:CDS
AGGTGCAAGAGTACACAGAG+AGG 0.664297 4_3:+74183564 Msa0662230:CDS
ACTACCATAGGGGCTTTGCA+AGG 0.666249 4_3:-74180384 None:intergenic
ACAGCCAGTTAACTCACAAG+TGG 0.670821 4_3:+74181599 Msa0662230:CDS
GCGAGTTTCAAACAAAACAA+TGG 0.676982 4_3:+74180170 Msa0662230:exon
GTGTAATTGAAGCCAAGACG+GGG 0.677616 4_3:+74181487 Msa0662230:CDS
CTGACTGCAGGGTCATGTTG+AGG 0.678728 4_3:+74182781 Msa0662230:intron
TGAGAAGCGATGGTGAAGGT+GGG 0.692078 4_3:-74180222 None:intergenic
ATGATGAATCAACCACAATG+TGG 0.708739 4_3:+74182114 Msa0662230:CDS
CCAGCTATCATGACTCCTGG+AGG 0.717326 4_3:+74181525 Msa0662230:CDS
TCTGTGAGAAGCGATGGTGA+AGG 0.733173 4_3:-74180226 None:intergenic
TTTGAGAAGAACTACCATAG+GGG 0.735308 4_3:-74180394 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAATATATTAATTT+AGG + chr4_3:74180565-74180584 Msa0662230:intron 0.0%
!! ATAAAAAATATATTAATTTA+GGG + chr4_3:74180566-74180585 Msa0662230:intron 0.0%
!!! TATATATATTTTTTAACAAG+AGG + chr4_3:74180071-74180090 Msa0662230:five_prime_UTR 10.0%
!! TTGATAAATTTATATACTTT+AGG + chr4_3:74180627-74180646 Msa0662230:intron 10.0%
!! TGATAAATTTATATACTTTA+GGG + chr4_3:74180628-74180647 Msa0662230:intron 10.0%
!!! AATTGAATTATTTTGTAAAT+GGG + chr4_3:74181311-74181330 Msa0662230:intron 10.0%
!!! ATCAAAGTTTTTATATATAT+TGG + chr4_3:74183811-74183830 Msa0662230:intron 10.0%
!!! GAATTGAATTATTTTGTAAA+TGG + chr4_3:74181310-74181329 Msa0662230:intron 15.0%
!!! TTTTAAGTATTAATGAATGA+AGG + chr4_3:74181428-74181447 Msa0662230:intron 15.0%
!! TCATAATAAGTAGTTAAATA+CGG + chr4_3:74182301-74182320 Msa0662230:intron 15.0%
!!! ATTTGTTTTGTTATTTACTT+TGG + chr4_3:74184081-74184100 Msa0662230:intron 15.0%
!!! TTTTCTATTGAGTATTATTA+TGG + chr4_3:74184173-74184192 Msa0662230:intron 15.0%
!! CAAAGAAAATTGGATAAAAT+TGG - chr4_3:74180430-74180449 None:intergenic 20.0%
!! AAATAGTAGACAAAGAAAAT+TGG - chr4_3:74180440-74180459 None:intergenic 20.0%
!! AAACAAAAACTCATTCATTT+GGG - chr4_3:74180487-74180506 None:intergenic 20.0%
!! AAAACAAAAACTCATTCATT+TGG - chr4_3:74180488-74180507 None:intergenic 20.0%
!!! TTTTAGTATTTGTTAGTGAT+TGG + chr4_3:74180519-74180538 Msa0662230:intron 20.0%
!! TAGTCAAAAGTCAAATAATA+GGG - chr4_3:74181710-74181729 None:intergenic 20.0%
!! TTAGTCAAAAGTCAAATAAT+AGG - chr4_3:74181711-74181730 None:intergenic 20.0%
!! AAAAACATTGACAACTATTA+AGG - chr4_3:74181947-74181966 None:intergenic 20.0%
!!! AAGCTTTTGAAATTTTGTTA+TGG + chr4_3:74182153-74182172 Msa0662230:intron 20.0%
!!! GACATAACCTTTTAATTTTT+GGG + chr4_3:74182464-74182483 Msa0662230:intron 20.0%
!!! GGAATATCTATAAGTTTTAT+TGG + chr4_3:74182499-74182518 Msa0662230:intron 20.0%
!! ATAGATATACTAAATAACGA+AGG + chr4_3:74182613-74182632 Msa0662230:intron 20.0%
!!! TTTTACATAAAAAAGAGCTA+TGG + chr4_3:74182651-74182670 Msa0662230:intron 20.0%
!!! ATTTTCAATATATGTGAAAC+TGG + chr4_3:74183324-74183343 Msa0662230:intron 20.0%
!!! TTTTATATATATTGGAGAGT+TGG + chr4_3:74183819-74183838 Msa0662230:intron 20.0%
!! TTTATATATATTGGAGAGTT+GGG + chr4_3:74183820-74183839 Msa0662230:intron 20.0%
!! AATACATATTATTATGTGAG+TGG + chr4_3:74183998-74184017 Msa0662230:intron 20.0%
!! ATATGATAAGAACTAACAAT+AGG - chr4_3:74184057-74184076 None:intergenic 20.0%
!!! AAATTTTTAGCAGTAAAACA+AGG - chr4_3:74184604-74184623 None:intergenic 20.0%
!! AGTTAATGTCAATTTGATAA+TGG + chr4_3:74184984-74185003 Msa0662230:three_prime_UTR 20.0%
!! AGAATTTGAGATTAGATAGA+TGG + chr4_3:74180100-74180119 Msa0662230:five_prime_UTR 25.0%
! GATTAGATAGATGGAATAAA+AGG + chr4_3:74180109-74180128 Msa0662230:five_prime_UTR 25.0%
! AACAAAAACTCATTCATTTG+GGG - chr4_3:74180486-74180505 None:intergenic 25.0%
! ATTACACATTTATGCAGTTT+AGG + chr4_3:74180658-74180677 Msa0662230:intron 25.0%
! TTACACATTTATGCAGTTTA+GGG + chr4_3:74180659-74180678 Msa0662230:intron 25.0%
! GTATAATGTGTTTGTTTAGT+AGG + chr4_3:74180931-74180950 Msa0662230:intron 25.0%
! ATGAAAAAATGGACAATACT+AGG - chr4_3:74180970-74180989 None:intergenic 25.0%
!!! TAGTATTGTCCATTTTTTCA+TGG + chr4_3:74180969-74180988 Msa0662230:intron 25.0%
!! GTAAGGGTATATAAGTAATT+AGG + chr4_3:74181037-74181056 Msa0662230:intron 25.0%
! GTCAATTTATGAGATGTAAT+TGG - chr4_3:74181239-74181258 None:intergenic 25.0%
! TCTTGAACTTTGATACTTTA+AGG + chr4_3:74181367-74181386 Msa0662230:intron 25.0%
! AGGAATCGTATAATATTCAT+AGG + chr4_3:74181576-74181595 Msa0662230:CDS 25.0%
!!! ACTTTTGACTAATCTTACAA+TGG + chr4_3:74181719-74181738 Msa0662230:intron 25.0%
! AATTTATGATTGCATGTCTT+GGG + chr4_3:74181822-74181841 Msa0662230:CDS 25.0%
!! ATGCACTTTAGATTTTATGA+TGG + chr4_3:74182179-74182198 Msa0662230:intron 25.0%
! GGATAATAACAATGACAATA+TGG + chr4_3:74182253-74182272 Msa0662230:intron 25.0%
! AATTGATAAAAAGTGAGACT+GGG - chr4_3:74182280-74182299 None:intergenic 25.0%
! TAATTGATAAAAAGTGAGAC+TGG - chr4_3:74182281-74182300 None:intergenic 25.0%
!! TATTTTACTCATATGCTAGA+TGG - chr4_3:74182333-74182352 None:intergenic 25.0%
! ATAGAAGTTTGTAAACTGTA+GGG - chr4_3:74182384-74182403 None:intergenic 25.0%
! TATAGAAGTTTGTAAACTGT+AGG - chr4_3:74182385-74182404 None:intergenic 25.0%
! ACAAACTTCTATAAAACTAG+AGG + chr4_3:74182392-74182411 Msa0662230:intron 25.0%
!!! GGACATAACCTTTTAATTTT+TGG + chr4_3:74182463-74182482 Msa0662230:intron 25.0%
! AACTAGTCCCAAAAATTAAA+AGG - chr4_3:74182474-74182493 None:intergenic 25.0%
! AACTCAAACTATTGAACAAT+CGG - chr4_3:74183117-74183136 None:intergenic 25.0%
! AACTTCTATTAACAAGATTG+GGG - chr4_3:74183146-74183165 None:intergenic 25.0%
! CAACTTCTATTAACAAGATT+GGG - chr4_3:74183147-74183166 None:intergenic 25.0%
! TCAACTTCTATTAACAAGAT+TGG - chr4_3:74183148-74183167 None:intergenic 25.0%
! TTGTTAGAAAGAGAATATTC+TGG - chr4_3:74183686-74183705 None:intergenic 25.0%
! TTATATATATTGGAGAGTTG+GGG + chr4_3:74183821-74183840 Msa0662230:intron 25.0%
! CATAAGAACTCTTTACAAAA+GGG - chr4_3:74183968-74183987 None:intergenic 25.0%
! ACATAAGAACTCTTTACAAA+AGG - chr4_3:74183969-74183988 None:intergenic 25.0%
! TAAAGAGTTCTTATGTTGTT+TGG + chr4_3:74183973-74183992 Msa0662230:intron 25.0%
!! AAAGAGTTCTTATGTTGTTT+GGG + chr4_3:74183974-74183993 Msa0662230:intron 25.0%
! GAAGTTTAGTACATTAGTAT+AGG + chr4_3:74184108-74184127 Msa0662230:intron 25.0%
! TTATGATCTTAATAGTTGTC+TGG + chr4_3:74184232-74184251 Msa0662230:intron 25.0%
!!! CAAGTTTTAGTTAAAAGAGA+CGG - chr4_3:74184276-74184295 None:intergenic 25.0%
! ATCCTCTCATTTCTAAATAT+AGG + chr4_3:74184302-74184321 Msa0662230:intron 25.0%
! ATCCTATATTTAGAAATGAG+AGG - chr4_3:74184307-74184326 None:intergenic 25.0%
! ATAAGTCTCAAATTTGATTG+TGG + chr4_3:74184468-74184487 Msa0662230:intron 25.0%
! TAAGTCTCAAATTTGATTGT+GGG + chr4_3:74184469-74184488 Msa0662230:intron 25.0%
! AATATCTGGATTTAGAAATG+AGG + chr4_3:74184526-74184545 Msa0662230:intron 25.0%
! ATATCTGGATTTAGAAATGA+GGG + chr4_3:74184527-74184546 Msa0662230:intron 25.0%
! TTAAATCAAAACGGAAACAA+GGG - chr4_3:74184861-74184880 None:intergenic 25.0%
! TTAAATCAAAACGGAAACAA+GGG - chr4_3:74184861-74184880 None:intergenic 25.0%
! ACTGGATTCTTAAATCAAAA+CGG - chr4_3:74184897-74184916 None:intergenic 25.0%
ATTTGAGAAGAACTACCATA+GGG - chr4_3:74180398-74180417 None:intergenic 30.0%
TATGGTAGTTCTTCTCAAAT+CGG + chr4_3:74180398-74180417 Msa0662230:CDS 30.0%
TAATTTAGGGACTGAATTGA+TGG + chr4_3:74180579-74180598 Msa0662230:intron 30.0%
ATGCAGTTTAGGGATTAAAT+TGG + chr4_3:74180669-74180688 Msa0662230:intron 30.0%
TAAAGCATGTTATGACATGT+AGG + chr4_3:74180772-74180791 Msa0662230:intron 30.0%
!!! AAGTTTTAAGCGAAAACCAT+GGG - chr4_3:74180829-74180848 None:intergenic 30.0%
TACTGGGAAAATAAGTGTAA+GGG + chr4_3:74181021-74181040 Msa0662230:intron 30.0%
! GTAATTAGGTTGTAAAGTAG+TGG + chr4_3:74181051-74181070 Msa0662230:intron 30.0%
TTTCCATAGACTACATAGAT+AGG - chr4_3:74181146-74181165 None:intergenic 30.0%
ACGTAACAATGTGATATGTA+GGG + chr4_3:74181257-74181276 Msa0662230:intron 30.0%
! TTTCAGTTTGCTTGTAGTTA+CGG + chr4_3:74181465-74181484 Msa0662230:intron 30.0%
CAATTTATGATTGCATGTCT+TGG + chr4_3:74181821-74181840 Msa0662230:CDS 30.0%
!!! TTTTTTTGTGTGTGTGTGTA+AGG - chr4_3:74181878-74181897 None:intergenic 30.0%
GGAATTAAAGTAGCTAACAA+AGG - chr4_3:74181926-74181945 None:intergenic 30.0%
!!! GTTTTTACCTTGAAAGCATT+TGG + chr4_3:74181961-74181980 Msa0662230:intron 30.0%
GCTTTATCTGAAAACAAATG+TGG - chr4_3:74181990-74182009 None:intergenic 30.0%
! TTGTTTTCAGATAAAGCCAA+AGG + chr4_3:74181993-74182012 Msa0662230:intron 30.0%
! AGAAAAAGACGATACTGATT+TGG + chr4_3:74182220-74182239 Msa0662230:intron 30.0%
!! AATTTTCAGCATTGAGATTG+AGG + chr4_3:74182420-74182439 Msa0662230:intron 30.0%
ATAGAATGCACTATGTAGTT+TGG + chr4_3:74182580-74182599 Msa0662230:intron 30.0%
! TAAAAAAGAGCTATGGACTA+TGG + chr4_3:74182658-74182677 Msa0662230:intron 30.0%
!! TATGGACTATGGTGTATTTT+TGG + chr4_3:74182669-74182688 Msa0662230:intron 30.0%
! TTATGTGATGTGAAGTGTTT+CGG + chr4_3:74182718-74182737 Msa0662230:intron 30.0%
!! TTTGTTATTAATCTGACTGC+AGG + chr4_3:74182769-74182788 Msa0662230:intron 30.0%
! TTGTTATTAATCTGACTGCA+GGG + chr4_3:74182770-74182789 Msa0662230:intron 30.0%
TAAAAATCATGCAACTTCAG+AGG - chr4_3:74182861-74182880 None:intergenic 30.0%
!!! AACTTAGTTTTGCTGAAAGT+AGG + chr4_3:74182913-74182932 Msa0662230:intron 30.0%
GAACAATAGATACATGACTT+TGG + chr4_3:74183054-74183073 Msa0662230:intron 30.0%
!! ATAGAAGTTGAATTTTAGCG+CGG + chr4_3:74183157-74183176 Msa0662230:intron 30.0%
!! AGAATGGACTATTGGAAATT+TGG + chr4_3:74183274-74183293 Msa0662230:intron 30.0%
ATAGTTTATCTGACAGTTCT+TGG + chr4_3:74183447-74183466 Msa0662230:intron 30.0%
TTTCTGTACTCCAAAAAGAA+GGG - chr4_3:74183501-74183520 None:intergenic 30.0%
! TTTTCTGTACTCCAAAAAGA+AGG - chr4_3:74183502-74183521 None:intergenic 30.0%
!!! TCTTTTTGGAGTACAGAAAA+TGG + chr4_3:74183502-74183521 Msa0662230:intron 30.0%
TATATATATTGGAGAGTTGG+GGG + chr4_3:74183822-74183841 Msa0662230:intron 30.0%
CAGAAAATGATAAACCTGAT+GGG - chr4_3:74183921-74183940 None:intergenic 30.0%
ACAGAAAATGATAAACCTGA+TGG - chr4_3:74183922-74183941 None:intergenic 30.0%
TTACAAAAGGGTTGTAGAAA+TGG - chr4_3:74183956-74183975 None:intergenic 30.0%
AAAACAGACAAATGGACAAA+TGG - chr4_3:74184157-74184176 None:intergenic 30.0%
CTCAATAGAAAACAGACAAA+TGG - chr4_3:74184165-74184184 None:intergenic 30.0%
AAGTCTCAAATTTGATTGTG+GGG + chr4_3:74184470-74184489 Msa0662230:intron 30.0%
AAACATGAGGACTAAATATC+TGG + chr4_3:74184512-74184531 Msa0662230:intron 30.0%
TATCTGGATTTAGAAATGAG+GGG + chr4_3:74184528-74184547 Msa0662230:intron 30.0%
! CTGCTAAAAATTTTCTTACC+CGG + chr4_3:74184611-74184630 Msa0662230:intron 30.0%
ATATTCATTCATGACTCATG+AGG - chr4_3:74184765-74184784 None:intergenic 30.0%
! GTAAGTTGACTTTCATAGAA+CGG + chr4_3:74184795-74184814 Msa0662230:three_prime_UTR 30.0%
!!! TCTAGTTTTGTCTGCTATTA+TGG + chr4_3:74184822-74184841 Msa0662230:three_prime_UTR 30.0%
CTTAAATCAAAACGGAAACA+AGG - chr4_3:74184862-74184881 None:intergenic 30.0%
AAGGGACTCTTAAATCAAAA+CGG - chr4_3:74184870-74184889 None:intergenic 30.0%
CTTAAATCAAAACGGAAACA+AGG - chr4_3:74184862-74184881 None:intergenic 30.0%
TTGACAATGTGAAGTAGTTT+GGG - chr4_3:74184925-74184944 None:intergenic 30.0%
ATTGACAATGTGAAGTAGTT+TGG - chr4_3:74184926-74184945 None:intergenic 30.0%
!!! CACATTGTCAATTTTGAAGT+AGG + chr4_3:74184934-74184953 Msa0662230:three_prime_UTR 30.0%
!!! TGTGTAATAACGCCTTGTTT+TGG + chr4_3:74180139-74180158 Msa0662230:five_prime_UTR 35.0%
GCGAGTTTCAAACAAAACAA+TGG + chr4_3:74180170-74180189 Msa0662230:exon 35.0%
! GAGAAAACGTAAGTTGAGAA+GGG - chr4_3:74180257-74180276 None:intergenic 35.0%
! TGAGAAAACGTAAGTTGAGA+AGG - chr4_3:74180258-74180277 None:intergenic 35.0%
GTGAAAGCGAAAGTTGAAAT+GGG - chr4_3:74180304-74180323 None:intergenic 35.0%
AGTGAAAGCGAAAGTTGAAA+TGG - chr4_3:74180305-74180324 None:intergenic 35.0%
TTTGAGAAGAACTACCATAG+GGG - chr4_3:74180397-74180416 None:intergenic 35.0%
GATTTGAGAAGAACTACCAT+AGG - chr4_3:74180399-74180418 None:intergenic 35.0%
GGAAAGAAAGTGATAGTTTG+AGG + chr4_3:74180690-74180709 Msa0662230:intron 35.0%
!!! TGTAGGTTTTTGTTTTACGC+AGG + chr4_3:74180789-74180808 Msa0662230:intron 35.0%
!!! CAAGTTTTAAGCGAAAACCA+TGG - chr4_3:74180830-74180849 None:intergenic 35.0%
! GAGAAAAGTACACATGATGT+TGG + chr4_3:74180852-74180871 Msa0662230:CDS 35.0%
AGCACTTGAAAGAGTAACAA+GGG - chr4_3:74180901-74180920 None:intergenic 35.0%
AAGCACTTGAAAGAGTAACA+AGG - chr4_3:74180902-74180921 None:intergenic 35.0%
TCGGTTGAACCATGAAAAAA+TGG - chr4_3:74180981-74181000 None:intergenic 35.0%
TGACTTTCTGTGATTGTACT+GGG + chr4_3:74181005-74181024 Msa0662230:intron 35.0%
GTACTGGGAAAATAAGTGTA+AGG + chr4_3:74181020-74181039 Msa0662230:intron 35.0%
! GGTCTATAAGCTGAATGTTT+TGG - chr4_3:74181091-74181110 None:intergenic 35.0%
TGACCTATCTATGTAGTCTA+TGG + chr4_3:74181140-74181159 Msa0662230:intron 35.0%
GACGTAACAATGTGATATGT+AGG + chr4_3:74181256-74181275 Msa0662230:intron 35.0%
!! ATCTCTCATCTGTTTTGTTC+AGG + chr4_3:74181556-74181575 Msa0662230:CDS 35.0%
TGATCCAGATGCAGATATAA+TGG + chr4_3:74181662-74181681 Msa0662230:CDS 35.0%
CAAACCATTATATCTGCATC+TGG - chr4_3:74181669-74181688 None:intergenic 35.0%
CAGATGTATATAAATTGCCC+TGG + chr4_3:74181775-74181794 Msa0662230:intron 35.0%
ATGTATATAAATTGCCCTGG+TGG + chr4_3:74181778-74181797 Msa0662230:CDS 35.0%
!! TTTACCTTGAAAGCATTTGG+TGG + chr4_3:74181964-74181983 Msa0662230:intron 35.0%
TTTCAGATAAAGCCAAAGGT+TGG + chr4_3:74181997-74182016 Msa0662230:intron 35.0%
AAACATACTGTACCAACCTT+TGG - chr4_3:74182012-74182031 None:intergenic 35.0%
!! AAGGTTGGTACAGTATGTTT+CGG + chr4_3:74182012-74182031 Msa0662230:CDS 35.0%
TTCATCATAATGCGAGCATT+TGG - chr4_3:74182102-74182121 None:intergenic 35.0%
ATGATGAATCAACCACAATG+TGG + chr4_3:74182114-74182133 Msa0662230:CDS 35.0%
AATCAACCACAATGTGGATA+TGG + chr4_3:74182120-74182139 Msa0662230:CDS 35.0%
ATCAACCACAATGTGGATAT+GGG + chr4_3:74182121-74182140 Msa0662230:CDS 35.0%
!!! ATTTTTGGGACTAGTTGCAA+TGG + chr4_3:74182478-74182497 Msa0662230:intron 35.0%
TGTTTCGGTCAATACTCAAT+AGG + chr4_3:74182733-74182752 Msa0662230:intron 35.0%
TTCAGCAAAACTAAGTTCAC+AGG - chr4_3:74182910-74182929 None:intergenic 35.0%
AACCCTTGAATGTATAGTGT+TGG + chr4_3:74182983-74183002 Msa0662230:intron 35.0%
ACCCTTGAATGTATAGTGTT+GGG + chr4_3:74182984-74183003 Msa0662230:intron 35.0%
TCCCAACACTATACATTCAA+GGG - chr4_3:74182988-74183007 None:intergenic 35.0%
AGTCATGTATCTATTGTTCC+AGG - chr4_3:74183053-74183072 None:intergenic 35.0%
!! TGTTCAATAGTTTGAGTTGC+CGG + chr4_3:74183119-74183138 Msa0662230:intron 35.0%
!! TAGAAGTTGAATTTTAGCGC+GGG + chr4_3:74183158-74183177 Msa0662230:intron 35.0%
! CTCATCAATGGTTTAAAACC+AGG - chr4_3:74183245-74183264 None:intergenic 35.0%
TTTCCAATAGTCCATTCTGT+TGG - chr4_3:74183272-74183291 None:intergenic 35.0%
TTCTGTACTCCAAAAAGAAG+GGG - chr4_3:74183500-74183519 None:intergenic 35.0%
!!! CAGTTTTCTTTCTGTTTCTG+AGG + chr4_3:74183589-74183608 Msa0662230:CDS 35.0%
TAAGTTAATGCGACTGAGAA+TGG + chr4_3:74183647-74183666 Msa0662230:intron 35.0%
ATATATATTGGAGAGTTGGG+GGG + chr4_3:74183823-74183842 Msa0662230:intron 35.0%
CCAGAATTGAGAGGAATATT+GGG + chr4_3:74183860-74183879 Msa0662230:intron 35.0%
AATTGAGAGGAATATTGGGT+TGG + chr4_3:74183864-74183883 Msa0662230:intron 35.0%
ATTGAGAGGAATATTGGGTT+GGG + chr4_3:74183865-74183884 Msa0662230:intron 35.0%
AAATGATAAACCTGATGGGA+AGG - chr4_3:74183917-74183936 None:intergenic 35.0%
CAAATGGACAAATGGCTAAA+GGG - chr4_3:74184149-74184168 None:intergenic 35.0%
ACAAATGGACAAATGGCTAA+AGG - chr4_3:74184150-74184169 None:intergenic 35.0%
GAGGAAAAATCCTGAAACTT+GGG - chr4_3:74184336-74184355 None:intergenic 35.0%
AGAGGAAAAATCCTGAAACT+TGG - chr4_3:74184337-74184356 None:intergenic 35.0%
GGAAAAATAAGTCCCAAACT+GGG - chr4_3:74184363-74184382 None:intergenic 35.0%
!! GAGACTTATTTTTCATGACG+TGG - chr4_3:74184457-74184476 None:intergenic 35.0%
AGTCTCAAATTTGATTGTGG+GGG + chr4_3:74184471-74184490 Msa0662230:intron 35.0%
! CTTGTAACTTGTGAAACATG+AGG + chr4_3:74184499-74184518 Msa0662230:intron 35.0%
GAAATGAGGGGAATAAAATC+CGG + chr4_3:74184540-74184559 Msa0662230:intron 35.0%
! ATCCGGCTCTAGTTAAAAAT+AGG + chr4_3:74184557-74184576 Msa0662230:intron 35.0%
! TCCGGCTCTAGTTAAAAATA+GGG + chr4_3:74184558-74184577 Msa0662230:intron 35.0%
!!! TCCCTATTTTTAACTAGAGC+CGG - chr4_3:74184562-74184581 None:intergenic 35.0%
AGAGGCAGATACAAAAATAC+CGG - chr4_3:74184633-74184652 None:intergenic 35.0%
!! TTGGAGTTTGGTCTTATTGA+TGG + chr4_3:74184667-74184686 Msa0662230:CDS 35.0%
AGATTCAATACTCTGTTTCC+AGG - chr4_3:74184696-74184715 None:intergenic 35.0%
TGACAATGTGAAGTAGTTTG+GGG - chr4_3:74184924-74184943 None:intergenic 35.0%
! CTCAACTTACGTTTTCTCAC+AGG + chr4_3:74180259-74180278 Msa0662230:CDS 40.0%
AGGAAGAAGATATCGTGCAA+GGG - chr4_3:74180367-74180386 None:intergenic 40.0%
AAGGAAGAAGATATCGTGCA+AGG - chr4_3:74180368-74180387 None:intergenic 40.0%
GGCTTATCAAGTAAAACCCA+TGG + chr4_3:74180810-74180829 Msa0662230:intron 40.0%
GTACACATGATGTTGGTACA+AGG + chr4_3:74180859-74180878 Msa0662230:CDS 40.0%
AATCACAGAAAGTCAGGCTT+CGG - chr4_3:74181000-74181019 None:intergenic 40.0%
CAGTACAATCACAGAAAGTC+AGG - chr4_3:74181006-74181025 None:intergenic 40.0%
CTGACTTTCTGTGATTGTAC+TGG + chr4_3:74181004-74181023 Msa0662230:intron 40.0%
AACATTCAGCTTATAGACCG+TGG + chr4_3:74181092-74181111 Msa0662230:intron 40.0%
ATTCTAAATACGCCATGCCA+CGG - chr4_3:74181112-74181131 None:intergenic 40.0%
!!! GGGGTTTTAACTCATTTCAG+AGG - chr4_3:74181395-74181414 None:intergenic 40.0%
! TTAAAAGAGTGCAGAGACTG+GGG - chr4_3:74181414-74181433 None:intergenic 40.0%
! CTTAAAAGAGTGCAGAGACT+GGG - chr4_3:74181415-74181434 None:intergenic 40.0%
! ACTTAAAAGAGTGCAGAGAC+TGG - chr4_3:74181416-74181435 None:intergenic 40.0%
!! ATGATAGCTGGTGTTATTGG+CGG - chr4_3:74181516-74181535 None:intergenic 40.0%
!! GTCATGATAGCTGGTGTTAT+TGG - chr4_3:74181519-74181538 None:intergenic 40.0%
TTTGTGTGTGTGTGTAAGGT+AGG - chr4_3:74181874-74181893 None:intergenic 40.0%
TCAACCACAATGTGGATATG+GGG + chr4_3:74182122-74182141 Msa0662230:CDS 40.0%
!! AGACGATACTGATTTGGTGT+AGG + chr4_3:74182226-74182245 Msa0662230:intron 40.0%
!! TACTGATTTGGTGTAGGAAG+AGG + chr4_3:74182232-74182251 Msa0662230:intron 40.0%
GAAGTTTGTAAACTGTAGGG+AGG - chr4_3:74182381-74182400 None:intergenic 40.0%
AGGTTATGTCCAATGCAACT+TGG - chr4_3:74182454-74182473 None:intergenic 40.0%
AGGAAGAAAGACTAACATGG+CGG - chr4_3:74182841-74182860 None:intergenic 40.0%
CAGAGGAAGAAAGACTAACA+TGG - chr4_3:74182844-74182863 None:intergenic 40.0%
GTCCCAACACTATACATTCA+AGG - chr4_3:74182989-74183008 None:intergenic 40.0%
TCCAGGTAAAGAATTCAACG+AGG - chr4_3:74183036-74183055 None:intergenic 40.0%
CTATTAACAAGATTGGGGAC+CGG - chr4_3:74183141-74183160 None:intergenic 40.0%
! CATTTGGGCTTTTAGCAAGA+TGG - chr4_3:74183203-74183222 None:intergenic 40.0%
CTCCTCACACAAAGTCATTT+GGG - chr4_3:74183218-74183237 None:intergenic 40.0%
ACTCCTCACACAAAGTCATT+TGG - chr4_3:74183219-74183238 None:intergenic 40.0%
CAATAGTCCATTCTGTTGGA+TGG - chr4_3:74183268-74183287 None:intergenic 40.0%
!! CATCCAACAGAATGGACTAT+TGG + chr4_3:74183266-74183285 Msa0662230:intron 40.0%
TCTTCATGCTCAAGTTACCA+TGG + chr4_3:74183367-74183386 Msa0662230:intron 40.0%
TCTGTACTCCAAAAAGAAGG+GGG - chr4_3:74183499-74183518 None:intergenic 40.0%
AAGATGTTCAGTGCTTTCAC+TGG + chr4_3:74183527-74183546 Msa0662230:CDS 40.0%
GCCAGAATTGAGAGGAATAT+TGG + chr4_3:74183859-74183878 Msa0662230:intron 40.0%
CCCAATATTCCTCTCAATTC+TGG - chr4_3:74183863-74183882 None:intergenic 40.0%
!! GAATATTGGGTTGGGTAAGT+CGG + chr4_3:74183873-74183892 Msa0662230:intron 40.0%
!! AATATTGGGTTGGGTAAGTC+GGG + chr4_3:74183874-74183893 Msa0662230:intron 40.0%
! TTTTTCCTCTCAACCCAGTT+TGG + chr4_3:74184347-74184366 Msa0662230:intron 40.0%
! TTTTCCTCTCAACCCAGTTT+GGG + chr4_3:74184348-74184367 Msa0662230:intron 40.0%
GGGAAAAATAAGTCCCAAAC+TGG - chr4_3:74184364-74184383 None:intergenic 40.0%
! TCCTAATTTGCACCAGAAGT+GGG - chr4_3:74184392-74184411 None:intergenic 40.0%
! TTCCTAATTTGCACCAGAAG+TGG - chr4_3:74184393-74184412 None:intergenic 40.0%
GAGGCAGATACAAAAATACC+GGG - chr4_3:74184632-74184651 None:intergenic 40.0%
TATCTGCCTCTTCTCATTTC+AGG + chr4_3:74184642-74184661 Msa0662230:intron 40.0%
!! TCATTTCAGGCTTTGGAGTT+TGG + chr4_3:74184655-74184674 Msa0662230:intron 40.0%
! GAAGTAGTTTGGGGTATAAC+TGG - chr4_3:74184915-74184934 None:intergenic 40.0%
GATTCTTCTGTGAGAAGCGA+TGG - chr4_3:74180235-74180254 None:intergenic 45.0%
CGGTGTAATTGAAGCCAAGA+CGG + chr4_3:74181485-74181504 Msa0662230:CDS 45.0%
GGTGTAATTGAAGCCAAGAC+GGG + chr4_3:74181486-74181505 Msa0662230:CDS 45.0%
GTGTAATTGAAGCCAAGACG+GGG + chr4_3:74181487-74181506 Msa0662230:CDS 45.0%
!! TGATAGCTGGTGTTATTGGC+GGG - chr4_3:74181515-74181534 None:intergenic 45.0%
ACAGCCAGTTAACTCACAAG+TGG + chr4_3:74181599-74181618 Msa0662230:CDS 45.0%
TGAGCCACTTGTGAGTTAAC+TGG - chr4_3:74181606-74181625 None:intergenic 45.0%
TATATCGCAGCTTGTGACTC+TGG + chr4_3:74181632-74181651 Msa0662230:CDS 45.0%
TGTGTGTGTAAGGTAGGATG+GGG - chr4_3:74181868-74181887 None:intergenic 45.0%
GTGTGTGTGTAAGGTAGGAT+GGG - chr4_3:74181869-74181888 None:intergenic 45.0%
TGTGTGTGTGTAAGGTAGGA+TGG - chr4_3:74181870-74181889 None:intergenic 45.0%
CTTACCCCATATCCACATTG+TGG - chr4_3:74182129-74182148 None:intergenic 45.0%
GGAAGAAAGACTAACATGGC+GGG - chr4_3:74182840-74182859 None:intergenic 45.0%
GCCTCGTTGAATTCTTTACC+TGG + chr4_3:74183032-74183051 Msa0662230:intron 45.0%
AGCCCAAATGACTTTGTGTG+AGG + chr4_3:74183213-74183232 Msa0662230:intron 45.0%
TCTGTTGGATGGCTCATCAA+TGG - chr4_3:74183257-74183276 None:intergenic 45.0%
TGATGAGCCATCCAACAGAA+TGG + chr4_3:74183258-74183277 Msa0662230:intron 45.0%
TAACTAAGTAGCAGCTGCCA+TGG - chr4_3:74183387-74183406 None:intergenic 45.0%
AGGGGGAAGAAGAGGAAAAT+AGG - chr4_3:74183482-74183501 None:intergenic 45.0%
CAAAAAGAAGGGGGAAGAAG+AGG - chr4_3:74183490-74183509 None:intergenic 45.0%
! CTCTTCTTCCCCCTTCTTTT+TGG + chr4_3:74183488-74183507 Msa0662230:intron 45.0%
CACTGGACAGACATTAGAGA+AGG + chr4_3:74183544-74183563 Msa0662230:CDS 45.0%
!! ATATTGGGTTGGGTAAGTCG+GGG + chr4_3:74183875-74183894 Msa0662230:intron 45.0%
! GTCTGGCTTAAATGCACTTC+TGG + chr4_3:74184249-74184268 Msa0662230:intron 45.0%
! GGATTTTCGTCCCAAGTTTC+AGG + chr4_3:74184323-74184342 Msa0662230:intron 45.0%
! TTTTCCCAACAACCCACTTC+TGG + chr4_3:74184377-74184396 Msa0662230:intron 45.0%
ACCCACTTCTGGTGCAAATT+AGG + chr4_3:74184388-74184407 Msa0662230:intron 45.0%
CCAAAGCCTGAAATGAGAAG+AGG - chr4_3:74184651-74184670 None:intergenic 45.0%
CCTCTTCTCATTTCAGGCTT+TGG + chr4_3:74184648-74184667 Msa0662230:intron 45.0%
!! TGGTCTTATTGATGGTGTCC+TGG + chr4_3:74184675-74184694 Msa0662230:CDS 45.0%
CAAGAAAGAGCCTGCTAAAG+TGG + chr4_3:74184958-74184977 Msa0662230:three_prime_UTR 45.0%
! ATTAACTGCGCCACTTTAGC+AGG - chr4_3:74184971-74184990 None:intergenic 45.0%
TCGCGTGAAGCTCCAAAACA+AGG - chr4_3:74180154-74180173 None:intergenic 50.0%
TGAGAAGCGATGGTGAAGGT+GGG - chr4_3:74180225-74180244 None:intergenic 50.0%
TCTGTGAGAAGCGATGGTGA+AGG - chr4_3:74180229-74180248 None:intergenic 50.0%
TCTTCCTTGCAAAGCCCCTA+TGG + chr4_3:74180380-74180399 Msa0662230:CDS 50.0%
ACTACCATAGGGGCTTTGCA+AGG - chr4_3:74180387-74180406 None:intergenic 50.0%
TCAGCTTATAGACCGTGGCA+TGG + chr4_3:74181097-74181116 Msa0662230:intron 50.0%
ACACCAGCTATCATGACTCC+TGG + chr4_3:74181522-74181541 Msa0662230:CDS 50.0%
CCGAATAAGTGCTTCCACCA+GGG - chr4_3:74181795-74181814 None:intergenic 50.0%
!! CCCTGGTGGAAGCACTTATT+CGG + chr4_3:74181792-74181811 Msa0662230:CDS 50.0%
ACCGAATAAGTGCTTCCACC+AGG - chr4_3:74181796-74181815 None:intergenic 50.0%
GTGGCCACCAAATGCTTTCA+AGG - chr4_3:74181971-74181990 None:intergenic 50.0%
CAAGGAACACTTCTCCTTGC+CGG + chr4_3:74182048-74182067 Msa0662230:CDS 50.0%
GCTGATGTGCCAAGTTGCAT+TGG + chr4_3:74182442-74182461 Msa0662230:intron 50.0%
!! AGTTGAATTTTAGCGCGGGC+AGG + chr4_3:74183162-74183181 Msa0662230:intron 50.0%
CTTTGTGTGAGGAGTTGTCC+TGG + chr4_3:74183224-74183243 Msa0662230:intron 50.0%
! AGGTGCAAGAGTACACAGAG+AGG + chr4_3:74183564-74183583 Msa0662230:CDS 50.0%
! GGTGCAAGAGTACACAGAGA+GGG + chr4_3:74183565-74183584 Msa0662230:CDS 50.0%
CTGATGGGAAGGAACCTAGA+GGG - chr4_3:74183906-74183925 None:intergenic 50.0%
! AAGTCCCAAACTGGGTTGAG+AGG - chr4_3:74184355-74184374 None:intergenic 50.0%
!! TGCACCAGAAGTGGGTTGTT+GGG - chr4_3:74184384-74184403 None:intergenic 50.0%
!! TTGCACCAGAAGTGGGTTGT+TGG - chr4_3:74184385-74184404 None:intergenic 50.0%
ATGGTGAAGGTGGGAGTTGC+AGG - chr4_3:74180216-74180235 None:intergenic 55.0%
GTGAGAAGCGATGGTGAAGG+TGG - chr4_3:74180226-74180245 None:intergenic 55.0%
CCTCCAGGAGTCATGATAGC+TGG - chr4_3:74181528-74181547 None:intergenic 55.0%
CCAGCTATCATGACTCCTGG+AGG + chr4_3:74181525-74181544 Msa0662230:CDS 55.0%
GAGAGATCAAGAGCTCCTCC+AGG - chr4_3:74181543-74181562 None:intergenic 55.0%
TTCGGAGTAGCTGCAAGCCA+AGG + chr4_3:74182030-74182049 Msa0662230:CDS 55.0%
!! CGGCAAGGAGAAGTGTTCCT+TGG - chr4_3:74182050-74182069 None:intergenic 55.0%
GAACACTTCTCCTTGCCGGT+GGG + chr4_3:74182052-74182071 Msa0662230:CDS 55.0%
AACACTTCTCCTTGCCGGTG+GGG + chr4_3:74182053-74182072 Msa0662230:CDS 55.0%
CTGACTGCAGGGTCATGTTG+AGG + chr4_3:74182781-74182800 Msa0662230:intron 55.0%
GGGGGTAAGCCAGAATTGAG+AGG + chr4_3:74183851-74183870 Msa0662230:intron 55.0%
CCTGATGGGAAGGAACCTAG+AGG - chr4_3:74183907-74183926 None:intergenic 55.0%
CCTCTAGGTTCCTTCCCATC+AGG + chr4_3:74183904-74183923 Msa0662230:intron 55.0%
!! TATTGGCGGGTTCCCCGTCT+TGG - chr4_3:74181502-74181521 None:intergenic 60.0%
GGAACACTTCTCCTTGCCGG+TGG + chr4_3:74182051-74182070 Msa0662230:CDS 60.0%
TTGGAGAGTTGGGGGGTCGA+TGG + chr4_3:74183830-74183849 Msa0662230:intron 60.0%
TGGAGAGTTGGGGGGTCGAT+GGG + chr4_3:74183831-74183850 Msa0662230:intron 60.0%
TCTCCTTGCCGGTGGGGAGA+AGG + chr4_3:74182059-74182078 Msa0662230:CDS 65.0%
CTCCTTGCCGGTGGGGAGAA+GGG + chr4_3:74182060-74182079 Msa0662230:CDS 65.0%
TTCCCTTCTCCCCACCGGCA+AGG - chr4_3:74182065-74182084 None:intergenic 65.0%
GCGCATTCCCTTCTCCCCAC+CGG - chr4_3:74182070-74182089 None:intergenic 65.0%
GGAGAGTTGGGGGGTCGATG+GGG + chr4_3:74183832-74183851 Msa0662230:intron 65.0%
GAGAGTTGGGGGGTCGATGG+GGG + chr4_3:74183833-74183852 Msa0662230:intron 65.0%
GGGTTGGGTAAGTCGGGGCA+AGG + chr4_3:74183880-74183899 Msa0662230:intron 65.0%
AAGTCGGGGCAAGGCCCTCT+AGG + chr4_3:74183889-74183908 Msa0662230:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 74180042 74185016 74180042 ID=Msa0662230;Name=Msa0662230
chr4_3 mRNA 74180042 74185016 74180042 ID=Msa0662230-mRNA-1;Parent=Msa0662230;Name=Msa0662230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=147|1|1|1|0.77|0.7|10|278|274
chr4_3 exon 74180042 74180280 74180042 ID=Msa0662230-mRNA-1:exon:22331;Parent=Msa0662230-mRNA-1
chr4_3 exon 74180361 74180419 74180361 ID=Msa0662230-mRNA-1:exon:22332;Parent=Msa0662230-mRNA-1
chr4_3 exon 74180811 74180880 74180811 ID=Msa0662230-mRNA-1:exon:22333;Parent=Msa0662230-mRNA-1
chr4_3 exon 74181482 74181683 74181482 ID=Msa0662230-mRNA-1:exon:22334;Parent=Msa0662230-mRNA-1
chr4_3 exon 74181778 74181843 74181778 ID=Msa0662230-mRNA-1:exon:22335;Parent=Msa0662230-mRNA-1
chr4_3 exon 74182003 74182143 74182003 ID=Msa0662230-mRNA-1:exon:22336;Parent=Msa0662230-mRNA-1
chr4_3 exon 74182791 74182844 74182791 ID=Msa0662230-mRNA-1:exon:22337;Parent=Msa0662230-mRNA-1
chr4_3 exon 74183518 74183610 74183518 ID=Msa0662230-mRNA-1:exon:22338;Parent=Msa0662230-mRNA-1
chr4_3 exon 74184664 74184869 74184664 ID=Msa0662230-mRNA-1:exon:22339;Parent=Msa0662230-mRNA-1
chr4_3 exon 74184897 74185016 74184897 ID=Msa0662230-mRNA-1:exon:22340;Parent=Msa0662230-mRNA-1
chr4_3 five_prime_UTR 74180042 74180188 74180042 ID=Msa0662230-mRNA-1:five_prime_utr;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74180189 74180280 74180189 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74180361 74180419 74180361 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74180811 74180880 74180811 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74181482 74181683 74181482 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74181778 74181843 74181778 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74182003 74182143 74182003 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74182791 74182844 74182791 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74183518 74183610 74183518 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 CDS 74184664 74184711 74184664 ID=Msa0662230-mRNA-1:cds;Parent=Msa0662230-mRNA-1
chr4_3 three_prime_UTR 74184712 74184869 74184712 ID=Msa0662230-mRNA-1:three_prime_utr;Parent=Msa0662230-mRNA-1
chr4_3 three_prime_UTR 74184897 74185016 74184897 ID=Msa0662230-mRNA-1:three_prime_utr;Parent=Msa0662230-mRNA-1
Gene Sequence

>Msa0662230

ATGGTATCTCAAGCGCTATCAGTTCCTGCAACTCCCACCTTCACCATCGCTTCTCACAGAAGAATCCCTTCTCAACTTACGTTTTCTCACAGAAACCCTTGCACGATATCTTCTTCCTTGCAAAGCCCCTATGGTAGTTCTTCTCAAATCGGCTTATCAAGTAAAACCCATGGTTTTCGCTTAAAACTTGATGAGAAAAGTACACATGATGTTGGTACAAGTTACGGTGTAATTGAAGCCAAGACGGGGAACCCGCCAATAACACCAGCTATCATGACTCCTGGAGGAGCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCTACTATTGATCCAGATGCAGATATAATGATGTATATAAATTGCCCTGGTGGAAGCACTTATTCGGTGCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGTTTCGGAGTAGCTGCAAGCCAAGGAACACTTCTCCTTGCCGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATGCTCGCATTATGATGAATCAACCACAATGTGGATATGGGGGTCATGTTGAGGATGTGAGACGTCTAGTGAATGAAGCTGTTCAATCCCGCCATAAAATGGAGAAGATGTTCAGTGCTTTCACTGGACAGACATTAGAGAAGGTGCAAGAGTACACAGAGAGGGACAGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA

Protein sequence

>Msa0662230

MVSQALSVPATPTFTIASHRRIPSQLTFSHRNPCTISSSLQSPYGSSSQIGLSSKTHGFRLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADIMMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMMNQPQCGYGGHVEDVRRLVNEAVQSRHKMEKMFSAFTGQTLEKVQEYTERDSFLSVSEALEFGLIDGVLETEY*