AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721260 MtrunA17_Chr5g0397821 95.312 128 6 0 49 176 114 241 1.97e-88 258
Msa0721260 MtrunA17_Chr5g0397821 98.000 50 1 0 1 50 1 50 1.84e-16 74.3
Msa0721260 MtrunA17_Chr8g0386341 42.534 221 59 5 6 160 30 248 3.71e-51 164
Msa0721260 MtrunA17_Chr5g0397831 57.851 121 42 1 49 160 116 236 8.69e-45 147
Msa0721260 MtrunA17_Chr1g0180121 45.082 122 56 3 50 160 121 242 1.62e-29 108
Msa0721260 MtrunA17_Chr5g0424221 50.420 119 48 5 51 159 122 239 1.63e-29 109
Msa0721260 MtrunA17_Chr1g0180161 43.511 131 61 4 50 169 121 249 2.66e-29 108
Msa0721260 MtrunA17_Chr6g0482741 46.774 124 53 4 49 160 118 240 2.27e-28 105
Msa0721260 MtrunA17_Chr8g0371771 47.414 116 54 3 51 159 128 243 2.61e-28 107
Msa0721260 MtrunA17_Chr4g0037331 47.059 119 55 4 48 159 122 239 7.40e-28 106
Msa0721260 MtrunA17_Chr2g0311521 45.902 122 55 5 49 160 127 247 1.55e-27 108
Msa0721260 MtrunA17_Chr1g0154591 43.548 124 59 4 50 163 113 235 3.42e-27 102
Msa0721260 MtrunA17_Chr7g0265011 45.082 122 56 3 50 160 166 287 5.67e-27 103
Msa0721260 MtrunA17_Chr5g0405611 47.500 120 51 6 51 161 193 309 1.04e-26 103
Msa0721260 MtrunA17_Chr2g0312181 43.443 122 58 3 50 160 122 243 1.62e-26 100
Msa0721260 MtrunA17_Chr1g0156711 41.803 122 58 3 51 159 124 245 3.47e-26 101
Msa0721260 MtrunA17_Chr3g0142781 41.463 123 59 3 51 160 127 249 7.51e-26 100
Msa0721260 MtrunA17_Chr4g0037351 44.000 125 55 4 51 161 126 249 9.24e-26 100
Msa0721260 MtrunA17_Chr1g0179851 43.443 122 58 3 50 160 118 239 1.06e-25 98.6
Msa0721260 MtrunA17_Chr2g0311551 43.089 123 59 4 49 161 124 245 2.58e-25 101
Msa0721260 MtrunA17_Chr5g0428801 40.152 132 62 4 45 160 120 250 3.24e-25 99.0
Msa0721260 MtrunA17_Chr8g0351851 41.803 122 59 4 49 159 117 237 2.24e-24 95.1
Msa0721260 MtrunA17_Chr1g0179891 42.623 122 59 3 50 160 116 237 3.17e-24 94.7
Msa0721260 MtrunA17_Chr8g0352471 42.623 122 57 5 51 160 127 247 3.44e-24 96.3
Msa0721260 MtrunA17_Chr5g0405581 42.063 126 56 5 51 160 127 251 3.57e-24 95.9
Msa0721260 MtrunA17_Chr8g0392961 41.935 124 59 4 49 160 123 245 3.70e-24 94.7
Msa0721260 MtrunA17_Chr3g0112091 42.857 119 57 4 52 160 120 237 3.80e-24 94.7
Msa0721260 MtrunA17_Chr1g0180231 42.623 122 59 3 50 160 121 242 5.07e-24 94.4
Msa0721260 MtrunA17_Chr1g0179871 42.623 122 59 3 50 160 121 242 5.07e-24 94.4
Msa0721260 MtrunA17_Chr1g0180221 42.623 122 59 3 50 160 161 282 6.50e-24 95.1
Msa0721260 MtrunA17_Chr3g0141341 42.276 123 59 5 49 160 110 231 2.43e-23 92.4
Msa0721260 MtrunA17_Chr8g0357311 39.344 122 61 4 51 160 127 247 1.12e-22 91.3
Msa0721260 MtrunA17_Chr8g0371781 39.683 126 58 4 51 159 129 253 2.55e-22 90.9
Msa0721260 MtrunA17_Chr2g0311561 38.525 122 63 4 51 161 113 233 3.53e-21 87.8
Msa0721260 MtrunA17_Chr7g0239131 40.336 119 60 4 52 160 125 242 4.56e-20 84.0
Msa0721260 MtrunA17_Chr6g0452331 35.115 131 71 4 45 162 125 254 2.59e-18 79.7
Msa0721260 MtrunA17_Chr4g0031221 34.127 126 68 4 49 159 126 251 1.11e-17 77.8
Msa0721260 MtrunA17_Chr1g0180181 41.758 91 42 3 88 169 18 106 7.33e-17 72.4
Msa0721260 MtrunA17_Chr2g0311501 32.090 134 75 5 51 170 61 192 2.64e-15 70.5
Msa0721260 MtrunA17_Chr2g0311531 37.795 127 62 7 49 170 119 233 5.21e-15 70.5
Msa0721260 MtrunA17_Chr2g0309611 29.565 115 70 3 53 158 137 249 5.49e-12 62.4
Msa0721260 MtrunA17_Chr1g0179911 31.405 121 68 4 53 160 120 238 1.32e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721260 AT4G11650.1 75.000 116 25 2 51 163 115 229 2.61e-57 180
Msa0721260 AT4G11650.1 59.184 49 19 1 1 49 1 48 8.65e-11 59.3
Msa0721260 AT1G75050.1 45.528 123 54 4 50 160 122 243 3.02e-29 108
Msa0721260 AT4G38660.1 50.427 117 50 4 51 160 130 245 1.76e-28 108
Msa0721260 AT4G38660.2 50.427 117 50 4 51 160 108 223 2.53e-28 107
Msa0721260 AT1G75030.1 43.411 129 60 4 44 160 116 243 5.71e-28 105
Msa0721260 AT1G75800.1 43.200 125 56 3 51 160 124 248 7.90e-28 106
Msa0721260 AT4G38670.3 43.089 123 57 4 51 160 125 247 8.19e-28 105
Msa0721260 AT4G38670.1 43.089 123 57 4 51 160 125 247 8.19e-28 105
Msa0721260 AT4G38670.2 43.089 123 57 4 51 160 109 231 1.13e-27 104
Msa0721260 AT1G77700.3 47.059 119 52 4 51 159 154 271 1.46e-27 105
Msa0721260 AT1G20030.1 43.200 125 56 3 51 160 104 228 1.93e-27 104
Msa0721260 AT1G77700.2 47.059 119 52 4 51 159 154 271 2.13e-27 105
Msa0721260 AT1G20030.2 43.200 125 56 3 51 160 121 245 2.61e-27 104
Msa0721260 AT2G17860.1 42.969 128 56 4 49 160 123 249 3.39e-27 103
Msa0721260 AT4G36000.2 46.087 115 55 4 51 160 26 138 3.45e-27 102
Msa0721260 AT4G36000.1 46.087 115 55 4 51 160 26 138 3.45e-27 102
Msa0721260 AT1G77700.1 47.059 119 52 4 51 159 182 299 4.04e-27 105
Msa0721260 AT4G36010.1 43.284 134 58 5 51 167 125 257 1.13e-26 102
Msa0721260 AT4G36010.2 43.284 134 58 5 51 167 125 257 1.13e-26 102
Msa0721260 AT1G19320.1 42.063 126 62 4 44 159 122 246 1.55e-26 101
Msa0721260 AT5G24620.3 44.615 130 52 5 49 160 200 327 3.77e-26 103
Msa0721260 AT5G24620.4 44.615 130 52 5 49 160 179 306 4.86e-26 103
Msa0721260 AT1G75040.1 42.975 121 58 4 50 160 120 239 6.00e-26 99.8
Msa0721260 AT5G24620.1 44.615 130 52 5 49 160 124 251 6.18e-26 102
Msa0721260 AT4G24180.6 45.000 120 55 5 50 160 139 256 9.44e-25 97.1
Msa0721260 AT4G24180.5 45.000 120 55 5 50 160 134 251 1.07e-24 96.7
Msa0721260 AT4G24180.1 45.000 120 55 5 50 160 139 256 1.82e-24 97.4
Msa0721260 AT4G24180.2 45.000 120 55 5 50 160 134 251 1.90e-24 97.1
Msa0721260 AT1G73620.1 43.548 124 57 5 49 160 138 260 2.95e-24 95.9
Msa0721260 AT1G18250.2 42.742 124 58 5 49 160 118 240 3.60e-24 95.1
Msa0721260 AT1G18250.1 42.742 124 58 5 49 160 117 239 3.68e-24 95.1
Msa0721260 AT5G38280.2 35.000 140 76 3 50 174 125 264 2.35e-21 90.5
Msa0721260 AT5G38280.1 35.000 140 76 3 50 174 125 264 2.81e-21 90.5
Msa0721260 AT5G24620.2 41.667 132 57 5 47 160 5 134 9.00e-21 87.4
Msa0721260 AT4G24180.3 35.135 148 75 5 49 176 138 284 1.14e-18 82.0
Msa0721260 AT4G24180.4 35.135 148 75 5 49 176 133 279 1.24e-18 81.6
Msa0721260 AT1G70250.1 33.333 126 68 2 51 160 242 367 7.52e-17 77.8
Msa0721260 AT5G40020.1 33.333 126 72 4 51 165 129 253 1.43e-16 75.1
Msa0721260 AT5G02140.1 37.815 119 63 4 52 160 124 241 8.55e-16 73.6
Msa0721260 AT4G18250.1 36.364 121 69 3 53 165 157 277 8.98e-16 74.7
Msa0721260 AT5G02140.2 37.815 119 63 4 52 160 124 241 1.02e-15 72.8
Msa0721260 AT2G28790.1 32.540 126 74 3 45 159 123 248 1.22e-15 72.4
Msa0721260 AT2G28790.2 32.540 126 74 3 45 159 148 273 1.52e-15 72.8
Msa0721260 AT4G18253.1 31.356 118 71 3 53 160 121 238 8.36e-13 64.7

Find 52 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATTTCTTCCCTCTTAA+TGG 0.218122 5_1:+17715035 Msa0721260:CDS
AAGGAGTGAGGGTGAGTAGT+AGG 0.288125 5_1:-17711860 None:intergenic
TCGAGGCGGCGACCACCGCC+TGG 0.296708 5_1:-17711945 None:intergenic
ACAATTGCCCTTACACCGTT+TGG 0.330621 5_1:+17711910 Msa0721260:CDS
AATGAATATTGTTGCACTAA+TGG 0.346009 5_1:+17715161 Msa0721260:CDS
CCTTGAGTCCTCAATTCCTT+AGG 0.351684 5_1:-17715104 None:intergenic
GCAGCTGCCCAAACGGTGTA+AGG 0.366048 5_1:-17711918 None:intergenic
TACACACTGGTCTGGTTTAG+TGG 0.389430 5_1:-17715347 None:intergenic
ATTAGTGCAACAATATTCAT+TGG 0.423057 5_1:-17715159 None:intergenic
AGTTGCACTGCCGATATTAA+CGG 0.432233 5_1:+17715074 Msa0721260:CDS
TGGGCTAGCAGCTGCCCAAA+CGG 0.440365 5_1:-17711925 None:intergenic
CAATTGCCCTTACACCGTTT+GGG 0.441211 5_1:+17711911 Msa0721260:CDS
CATTTCAATACACACTGGTC+TGG 0.444048 5_1:-17715355 None:intergenic
TTATGACATCCACCATTAAG+AGG 0.444579 5_1:-17715047 None:intergenic
AGTACTTTCACTTGTCCTGC+TGG 0.444797 5_1:+17715272 Msa0721260:CDS
TCCATGTTTGACCGCGGTCG+AGG 0.458130 5_1:-17711962 None:intergenic
AGGAGTGAGGGTGAGTAGTA+GGG 0.465064 5_1:-17711859 None:intergenic
AGGGCACTGTCCGTTAATAT+CGG 0.472010 5_1:-17715084 None:intergenic
CTTGAGTCCTCAATTCCTTA+GGG 0.473616 5_1:-17715103 None:intergenic
AAGTGGGTCCACAGCTTCCT+TGG 0.484930 5_1:-17715184 None:intergenic
TACTTGTTGGATCATCTTGA+GGG 0.496803 5_1:-17715253 None:intergenic
ATTGTTGACGATCTCAAAGT+TGG 0.500722 5_1:-17711892 None:intergenic
GCAGCTGCTAGCCCAGGCGG+TGG 0.514788 5_1:+17711933 Msa0721260:CDS
GTTTGGGCAGCTGCTAGCCC+AGG 0.516906 5_1:+17711927 Msa0721260:CDS
CGATGGTTTCAACATCCCAA+TGG 0.524206 5_1:+17715016 Msa0721260:CDS
TACGACATCTCACTTGTCGA+TGG 0.528359 5_1:+17714999 Msa0721260:CDS
GGACAAGTGAAAGTACTTGT+TGG 0.531593 5_1:-17715266 None:intergenic
GATTTCTTCCCTCTTAATGG+TGG 0.535456 5_1:+17715038 Msa0721260:CDS
GTACTTGTTGGATCATCTTG+AGG 0.536813 5_1:-17715254 None:intergenic
GTGGACCCACTTATTTCTCA+AGG 0.546200 5_1:+17715195 Msa0721260:CDS
TCAAAGTTGGCTGCTTGTGA+AGG 0.547034 5_1:-17711879 None:intergenic
TTAAGAGGGAAGAAATCCAT+TGG 0.547257 5_1:-17715032 None:intergenic
TTTAGTGGCATCTCAATATG+AGG 0.552341 5_1:-17715332 None:intergenic
TAAGAGGGAAGAAATCCATT+GGG 0.555277 5_1:-17715031 None:intergenic
CGAGGCGGCGACCACCGCCT+GGG 0.558748 5_1:-17711944 None:intergenic
GACAGTGCCCTAAGGAATTG+AGG 0.563268 5_1:+17715096 Msa0721260:CDS
GGGAGCATAGTGTGAATGTG+AGG 0.572658 5_1:-17711839 None:intergenic
TATTGTTGCACTAATGGCCA+AGG 0.575870 5_1:+17715167 Msa0721260:CDS
CAGCTGCCCAAACGGTGTAA+GGG 0.577110 5_1:-17711917 None:intergenic
CCTAAGGAATTGAGGACTCA+AGG 0.579944 5_1:+17715104 Msa0721260:CDS
TGGGCAGCTGCTAGCCCAGG+CGG 0.593879 5_1:+17711930 Msa0721260:CDS
GGTGGTCGCCGCCTCGACCG+CGG 0.599782 5_1:+17711951 Msa0721260:CDS
TATGACATCCACCATTAAGA+GGG 0.601387 5_1:-17715046 None:intergenic
ATGTTTGACCGCGGTCGAGG+CGG 0.603815 5_1:-17711959 None:intergenic
TGGCTGCTTGTGAAGGAGTG+AGG 0.609598 5_1:-17711872 None:intergenic
GGCTGCTTGTGAAGGAGTGA+GGG 0.609799 5_1:-17711871 None:intergenic
ACTTTGTAGTTAGATCCAGC+AGG 0.625794 5_1:-17715287 None:intergenic
TATTAACGGACAGTGCCCTA+AGG 0.626097 5_1:+17715088 Msa0721260:CDS
ACTAATGGCCAAGGAAGCTG+TGG 0.677244 5_1:+17715176 Msa0721260:CDS
ATACACATTTCAATACACAC+TGG 0.687621 5_1:-17715360 None:intergenic
TCAATATGAGGAGCTCCAAG+AGG 0.715579 5_1:-17715320 None:intergenic
AAGGAATTGAGGACTCAAGG+TGG 0.730754 5_1:+17715107 Msa0721260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTCTTTTACTATAAATAT+AGG + chr5_1:17712281-17712300 Msa0721260:intron 15.0%
!!! GTTTCTTTTACTATAAATAT+AGG + chr5_1:17712281-17712300 Msa0721260:intron 15.0%
!!! ATTTTTCAGAAACGTATTTT+TGG + chr5_1:17712232-17712251 Msa0721260:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+GGG + chr5_1:17712233-17712252 Msa0721260:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG + chr5_1:17712257-17712276 Msa0721260:intron 20.0%
!!! ATTTTTCAGAAACGTATTTT+TGG + chr5_1:17712232-17712251 Msa0721260:intron 20.0%
!!! TTTTTCAGAAACGTATTTTT+GGG + chr5_1:17712233-17712252 Msa0721260:intron 20.0%
!!! CAGATTTGTTACAATTTTAT+GGG + chr5_1:17712257-17712276 Msa0721260:intron 20.0%
!!! TTATTTCTCAAGGTTTTTTA+AGG + chr5_1:17715205-17715224 Msa0721260:CDS 20.0%
! CCATAAAATTGTAACAAATC+TGG - chr5_1:17712259-17712278 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG + chr5_1:17712256-17712275 Msa0721260:intron 25.0%
! TATCAAAATAGTCTGATACA+AGG - chr5_1:17712307-17712326 None:intergenic 25.0%
!!! ACTATTTTGATAGAGATAGA+GGG + chr5_1:17712315-17712334 Msa0721260:intron 25.0%
! GTTACAAAAGAGATTTCAAT+GGG - chr5_1:17712525-17712544 None:intergenic 25.0%
! TTTGTATATGACAAAGTCTT+TGG + chr5_1:17713086-17713105 Msa0721260:intron 25.0%
!!! ATAAGTAAAGTTGTTGCTTT+AGG - chr5_1:17713125-17713144 None:intergenic 25.0%
! CCATAAAATTGTAACAAATC+TGG - chr5_1:17712259-17712278 None:intergenic 25.0%
!!! CCAGATTTGTTACAATTTTA+TGG + chr5_1:17712256-17712275 Msa0721260:intron 25.0%
! TATCAAAATAGTCTGATACA+AGG - chr5_1:17712307-17712326 None:intergenic 25.0%
!!! ACTATTTTGATAGAGATAGA+GGG + chr5_1:17712315-17712334 Msa0721260:intron 25.0%
! GTTACAAAAGAGATTTCAAT+GGG - chr5_1:17712525-17712544 None:intergenic 25.0%
! ATTAGTGCAACAATATTCAT+TGG - chr5_1:17715162-17715181 None:intergenic 25.0%
! AATGAATATTGTTGCACTAA+TGG + chr5_1:17715161-17715180 Msa0721260:CDS 25.0%
! AAAAACCTTGAGAAATAAGT+GGG - chr5_1:17715203-17715222 None:intergenic 25.0%
! AAAAAACCTTGAGAAATAAG+TGG - chr5_1:17715204-17715223 None:intergenic 25.0%
TTGTGAAAGTGACTCAAAAT+TGG + chr5_1:17712054-17712073 Msa0721260:intron 30.0%
! CTTTCAGCAAACATCAATTT+TGG - chr5_1:17712090-17712109 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG + chr5_1:17712097-17712116 Msa0721260:intron 30.0%
!!! GACTATTTTGATAGAGATAG+AGG + chr5_1:17712314-17712333 Msa0721260:intron 30.0%
!!! CTATTTTGATAGAGATAGAG+GGG + chr5_1:17712316-17712335 Msa0721260:intron 30.0%
!!! TATTTTGATAGAGATAGAGG+GGG + chr5_1:17712317-17712336 Msa0721260:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + chr5_1:17712379-17712398 Msa0721260:intron 30.0%
CGTTACAAAAGAGATTTCAA+TGG - chr5_1:17712526-17712545 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG + chr5_1:17712541-17712560 Msa0721260:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG + chr5_1:17712546-17712565 Msa0721260:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG + chr5_1:17712683-17712702 Msa0721260:intron 30.0%
ACAACCAAAATCAAAGTGTA+TGG - chr5_1:17712690-17712709 None:intergenic 30.0%
AAAGGATAATCAAGTACCAT+GGG + chr5_1:17712802-17712821 Msa0721260:intron 30.0%
AGCAACAACTTTACTTATTC+AGG + chr5_1:17713127-17713146 Msa0721260:intron 30.0%
ACAACTTTACTTATTCAGGA+TGG + chr5_1:17713131-17713150 Msa0721260:intron 30.0%
! CAACAAAATCATTGGTGATT+TGG + chr5_1:17713191-17713210 Msa0721260:intron 30.0%
TAAGAATACTCATGATCTAC+CGG + chr5_1:17713372-17713391 Msa0721260:intron 30.0%
! CAAACTACTCAAGGAATTTT+AGG - chr5_1:17713992-17714011 None:intergenic 30.0%
CTAAAATTCCTTGAGTAGTT+TGG + chr5_1:17713990-17714009 Msa0721260:intron 30.0%
ACCTTAATCTCTTCAATCAT+CGG - chr5_1:17714048-17714067 None:intergenic 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + chr5_1:17712054-17712073 Msa0721260:intron 30.0%
! CTTTCAGCAAACATCAATTT+TGG - chr5_1:17712090-17712109 None:intergenic 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG + chr5_1:17712097-17712116 Msa0721260:intron 30.0%
!!! GACTATTTTGATAGAGATAG+AGG + chr5_1:17712314-17712333 Msa0721260:intron 30.0%
!!! CTATTTTGATAGAGATAGAG+GGG + chr5_1:17712316-17712335 Msa0721260:intron 30.0%
!!! TATTTTGATAGAGATAGAGG+GGG + chr5_1:17712317-17712336 Msa0721260:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + chr5_1:17712379-17712398 Msa0721260:intron 30.0%
CGTTACAAAAGAGATTTCAA+TGG - chr5_1:17712526-17712545 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG + chr5_1:17712541-17712560 Msa0721260:intron 30.0%
! TTACTCATCATATAGTGGAA+CGG + chr5_1:17712546-17712565 Msa0721260:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG + chr5_1:17712683-17712702 Msa0721260:intron 30.0%
ACAACCAAAATCAAAGTGTA+TGG - chr5_1:17712690-17712709 None:intergenic 30.0%
! GAATTGGTTTAACGCATATT+CGG - chr5_1:17714964-17714983 None:intergenic 30.0%
GAATATGCGTTAAACCAATT+CGG + chr5_1:17714963-17714982 Msa0721260:intron 30.0%
AGAAATCTTGATTTCCGAAT+TGG - chr5_1:17714980-17714999 None:intergenic 30.0%
! TGGTCTTAAAAACTGTACAA+GGG - chr5_1:17715142-17715161 None:intergenic 30.0%
!! TTGGTCTTAAAAACTGTACA+AGG - chr5_1:17715143-17715162 None:intergenic 30.0%
!!! TCTCAAGGTTTTTTAAGGAT+AGG + chr5_1:17715210-17715229 Msa0721260:CDS 30.0%
ATTGTTGACGATCTCAAAGT+TGG - chr5_1:17711895-17711914 None:intergenic 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr5_1:17712061-17712080 Msa0721260:intron 35.0%
! GTTTTCTGTTCGGGAAAAAT+CGG + chr5_1:17712167-17712186 Msa0721260:intron 35.0%
AAAATAACAGCACGCGAAAT+CGG - chr5_1:17712217-17712236 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG + chr5_1:17712355-17712374 Msa0721260:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG + chr5_1:17712356-17712375 Msa0721260:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG + chr5_1:17712417-17712436 Msa0721260:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr5_1:17712436-17712455 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr5_1:17712444-17712463 Msa0721260:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG - chr5_1:17712608-17712627 None:intergenic 35.0%
AGAAAACAACAGCGAGAAAA+AGG - chr5_1:17712644-17712663 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG + chr5_1:17712649-17712668 Msa0721260:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG + chr5_1:17712725-17712744 Msa0721260:intron 35.0%
ACCAATAACAACTTGATGTG+TGG - chr5_1:17712729-17712748 None:intergenic 35.0%
CAAAGGATAATCAAGTACCA+TGG + chr5_1:17712801-17712820 Msa0721260:intron 35.0%
TGGGATATTGAGAAGTTTAC+CGG + chr5_1:17712832-17712851 Msa0721260:intron 35.0%
! TTTACCGGAGATAACGATTT+TGG + chr5_1:17712847-17712866 Msa0721260:intron 35.0%
! TTACCGGAGATAACGATTTT+GGG + chr5_1:17712848-17712867 Msa0721260:intron 35.0%
TAACCCAAAATCGTTATCTC+CGG - chr5_1:17712854-17712873 None:intergenic 35.0%
!!! GAGATAACGATTTTGGGTTA+TGG + chr5_1:17712854-17712873 Msa0721260:intron 35.0%
!!! TAACGATTTTGGGTTATGGA+AGG + chr5_1:17712858-17712877 Msa0721260:intron 35.0%
! AAAGTGTGAGAAAGCTTTGA+AGG + chr5_1:17712909-17712928 Msa0721260:intron 35.0%
!! AAGTGTGAGAAAGCTTTGAA+GGG + chr5_1:17712910-17712929 Msa0721260:intron 35.0%
!!! AGTTTTGAGAGAAGCAACAA+AGG + chr5_1:17713026-17713045 Msa0721260:intron 35.0%
GGTAAAGTTAAAGACTGTCA+TGG + chr5_1:17713152-17713171 Msa0721260:intron 35.0%
GTGGAGTTCAACAAAATCAT+TGG + chr5_1:17713183-17713202 Msa0721260:intron 35.0%
TTAAACACTCAACATCAACC+TGG + chr5_1:17713338-17713357 Msa0721260:intron 35.0%
AAGGGATTTCTTCATGAAGA+CGG + chr5_1:17713538-17713557 Msa0721260:intron 35.0%
AGGTTGAAGAATGTATAGCA+CGG + chr5_1:17713573-17713592 Msa0721260:intron 35.0%
GAATTACCCTAAAAGTCCAA+GGG + chr5_1:17713602-17713621 Msa0721260:intron 35.0%
! TGGATTACTCTAAAAGCCAA+GGG + chr5_1:17713792-17713811 Msa0721260:intron 35.0%
CAAACTACACTAGGAATTTC+AGG - chr5_1:17713896-17713915 None:intergenic 35.0%
CTGAAATTCCTAGTGTAGTT+TGG + chr5_1:17713894-17713913 Msa0721260:intron 35.0%
TCCGATGATTGAAGAGATTA+AGG + chr5_1:17714044-17714063 Msa0721260:intron 35.0%
GAGATTAAGGTGTAAACTTG+TGG + chr5_1:17714057-17714076 Msa0721260:intron 35.0%
!! AGCAAGGTGTTGATGTTAAA+TGG + chr5_1:17714115-17714134 Msa0721260:intron 35.0%
!! GCAAGGTGTTGATGTTAAAT+GGG + chr5_1:17714116-17714135 Msa0721260:intron 35.0%
AATGGGCATCATCACTAATT+TGG + chr5_1:17714133-17714152 Msa0721260:intron 35.0%
! TCATCACTAATTTGGAGTCA+AGG + chr5_1:17714141-17714160 Msa0721260:intron 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr5_1:17712061-17712080 Msa0721260:intron 35.0%
! GTTTTCTGTTCGGGAAAAAT+CGG + chr5_1:17712167-17712186 Msa0721260:intron 35.0%
AAAATAACAGCACGCGAAAT+CGG - chr5_1:17712217-17712236 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG + chr5_1:17712355-17712374 Msa0721260:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG + chr5_1:17712356-17712375 Msa0721260:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG + chr5_1:17712417-17712436 Msa0721260:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr5_1:17712436-17712455 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr5_1:17712444-17712463 Msa0721260:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG - chr5_1:17712608-17712627 None:intergenic 35.0%
AGAAAACAACAGCGAGAAAA+AGG - chr5_1:17712644-17712663 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG + chr5_1:17712649-17712668 Msa0721260:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG + chr5_1:17712725-17712744 Msa0721260:intron 35.0%
ACCAATAACAACTTGATGTG+TGG - chr5_1:17712729-17712748 None:intergenic 35.0%
TAAGAGGGAAGAAATCCATT+GGG - chr5_1:17715034-17715053 None:intergenic 35.0%
TTAAGAGGGAAGAAATCCAT+TGG - chr5_1:17715035-17715054 None:intergenic 35.0%
ATGGATTTCTTCCCTCTTAA+TGG + chr5_1:17715035-17715054 Msa0721260:CDS 35.0%
TATGACATCCACCATTAAGA+GGG - chr5_1:17715049-17715068 None:intergenic 35.0%
TTATGACATCCACCATTAAG+AGG - chr5_1:17715050-17715069 None:intergenic 35.0%
! TACTTGTTGGATCATCTTGA+GGG - chr5_1:17715256-17715275 None:intergenic 35.0%
!! AAAGTTGTTTTCTGTCCTCT+TGG + chr5_1:17715305-17715324 Msa0721260:CDS 35.0%
TTTAGTGGCATCTCAATATG+AGG - chr5_1:17715335-17715354 None:intergenic 35.0%
AACACCATCAAAGTTGCAAC+CGG - chr5_1:17712036-17712055 None:intergenic 40.0%
GACTCAAAATTGGAGTTTGG+AGG + chr5_1:17712064-17712083 Msa0721260:intron 40.0%
! TTGCTGAAAGTACAAATCGG+TGG + chr5_1:17712100-17712119 Msa0721260:intron 40.0%
!! CTTTTGGGAGGTTTTCTGTT+CGG + chr5_1:17712157-17712176 Msa0721260:intron 40.0%
!! TTTTGGGAGGTTTTCTGTTC+GGG + chr5_1:17712158-17712177 Msa0721260:intron 40.0%
GCTGAAACAAGGGTTTAGAA+AGG + chr5_1:17712339-17712358 Msa0721260:intron 40.0%
TCTCTTGGCAACAAACACTA+GGG + chr5_1:17712394-17712413 Msa0721260:intron 40.0%
CAACAAACACTAGGGTTTGA+AGG + chr5_1:17712402-17712421 Msa0721260:intron 40.0%
! GTTTGAAGGTTGATTCACCT+TGG + chr5_1:17712416-17712435 Msa0721260:intron 40.0%
TCACCTTGGGAAACACTATT+AGG + chr5_1:17712430-17712449 Msa0721260:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr5_1:17712450-17712469 Msa0721260:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG + chr5_1:17712550-17712569 Msa0721260:intron 40.0%
TTCATCGAATCCGCAACAAT+TGG + chr5_1:17712757-17712776 Msa0721260:intron 40.0%
TGGGTTATGGAAGGTAAAGA+TGG + chr5_1:17712867-17712886 Msa0721260:intron 40.0%
ATGGAAGGTAAAGATGGAAG+CGG + chr5_1:17712873-17712892 Msa0721260:intron 40.0%
! TGGTGATTTGGAGAACATTG+AGG + chr5_1:17713203-17713222 Msa0721260:intron 40.0%
AAGGTGATGTTTCTCACCTT+GGG + chr5_1:17713277-17713296 Msa0721260:intron 40.0%
AGGTTCAAGGAAGACATAGT+GGG + chr5_1:17713404-17713423 Msa0721260:intron 40.0%
! GTACTCATTTGCTAGTTGAG+AGG + chr5_1:17713429-17713448 Msa0721260:intron 40.0%
! TCATTTGCTAGTTGAGAGGT+TGG + chr5_1:17713433-17713452 Msa0721260:intron 40.0%
GATTTCTTCATGAAGACGGA+AGG + chr5_1:17713542-17713561 Msa0721260:intron 40.0%
GCTATACATTCTTCAACCTC+CGG - chr5_1:17713572-17713591 None:intergenic 40.0%
GGAATTACCCTAAAAGTCCA+AGG + chr5_1:17713601-17713620 Msa0721260:intron 40.0%
! CAATCACCCTTGGACTTTTA+GGG - chr5_1:17713611-17713630 None:intergenic 40.0%
TGTCTCGTATTGAAGAGGTA+TGG + chr5_1:17713662-17713681 Msa0721260:intron 40.0%
! GTGGATTACTCTAAAAGCCA+AGG + chr5_1:17713791-17713810 Msa0721260:intron 40.0%
TCTAAAAGCCAAGGGTGATT+GGG + chr5_1:17713800-17713819 Msa0721260:intron 40.0%
TGGGAACAAGTAGATCTTCA+AGG + chr5_1:17713819-17713838 Msa0721260:intron 40.0%
CAAGTAGATCTTCAAGGAAG+CGG + chr5_1:17713825-17713844 Msa0721260:intron 40.0%
AAGTAGATCTTCAAGGAAGC+GGG + chr5_1:17713826-17713845 Msa0721260:intron 40.0%
TGTCTCGTATTGAAGAGGTA+TGG + chr5_1:17713662-17713681 Msa0721260:intron 40.0%
CCTTGTATCCAAACTACACT+AGG - chr5_1:17713905-17713924 None:intergenic 40.0%
CCTAGTGTAGTTTGGATACA+AGG + chr5_1:17713902-17713921 Msa0721260:intron 40.0%
TTGGACACAAGGATCTTCAA+AGG + chr5_1:17714009-17714028 Msa0721260:intron 40.0%
TGGACACAAGGATCTTCAAA+GGG + chr5_1:17714010-17714029 Msa0721260:intron 40.0%
TGTAAACTTGTGGAGCTACT+TGG + chr5_1:17714067-17714086 Msa0721260:intron 40.0%
! TCACTAATTTGGAGTCAAGG+TGG + chr5_1:17714144-17714163 Msa0721260:intron 40.0%
GACTCAAAATTGGAGTTTGG+AGG + chr5_1:17712064-17712083 Msa0721260:intron 40.0%
! TTGCTGAAAGTACAAATCGG+TGG + chr5_1:17712100-17712119 Msa0721260:intron 40.0%
!! CTTTTGGGAGGTTTTCTGTT+CGG + chr5_1:17712157-17712176 Msa0721260:intron 40.0%
!! TTTTGGGAGGTTTTCTGTTC+GGG + chr5_1:17712158-17712177 Msa0721260:intron 40.0%
GCTGAAACAAGGGTTTAGAA+AGG + chr5_1:17712339-17712358 Msa0721260:intron 40.0%
TCTCTTGGCAACAAACACTA+GGG + chr5_1:17712394-17712413 Msa0721260:intron 40.0%
CAACAAACACTAGGGTTTGA+AGG + chr5_1:17712402-17712421 Msa0721260:intron 40.0%
! GTTTGAAGGTTGATTCACCT+TGG + chr5_1:17712416-17712435 Msa0721260:intron 40.0%
TCACCTTGGGAAACACTATT+AGG + chr5_1:17712430-17712449 Msa0721260:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr5_1:17712450-17712469 Msa0721260:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG + chr5_1:17712550-17712569 Msa0721260:intron 40.0%
TCCAAATTGACCTAGTATGG+GGG - chr5_1:17714683-17714702 None:intergenic 40.0%
GTCCAAATTGACCTAGTATG+GGG - chr5_1:17714684-17714703 None:intergenic 40.0%
GGTCCAAATTGACCTAGTAT+GGG - chr5_1:17714685-17714704 None:intergenic 40.0%
ATTCGGCTAATGTGTTTGGT+GGG - chr5_1:17714947-17714966 None:intergenic 40.0%
TATTCGGCTAATGTGTTTGG+TGG - chr5_1:17714948-17714967 None:intergenic 40.0%
GCATATTCGGCTAATGTGTT+TGG - chr5_1:17714951-17714970 None:intergenic 40.0%
GATTTCTTCCCTCTTAATGG+TGG + chr5_1:17715038-17715057 Msa0721260:CDS 40.0%
AGTTGCACTGCCGATATTAA+CGG + chr5_1:17715074-17715093 Msa0721260:CDS 40.0%
CTTGAGTCCTCAATTCCTTA+GGG - chr5_1:17715106-17715125 None:intergenic 40.0%
TATTGTTGCACTAATGGCCA+AGG + chr5_1:17715167-17715186 Msa0721260:CDS 40.0%
! GTACTTGTTGGATCATCTTG+AGG - chr5_1:17715257-17715276 None:intergenic 40.0%
!! GGACAAGTGAAAGTACTTGT+TGG - chr5_1:17715269-17715288 None:intergenic 40.0%
ACTTTGTAGTTAGATCCAGC+AGG - chr5_1:17715290-17715309 None:intergenic 40.0%
TCAAAGTTGGCTGCTTGTGA+AGG - chr5_1:17711882-17711901 None:intergenic 45.0%
ACAATTGCCCTTACACCGTT+TGG + chr5_1:17711910-17711929 Msa0721260:CDS 45.0%
CAATTGCCCTTACACCGTTT+GGG + chr5_1:17711911-17711930 Msa0721260:CDS 45.0%
TCCCAAAAGGCAGCCAAAAT+CGG - chr5_1:17712146-17712165 None:intergenic 45.0%
CGAACAGAAAACCTCCCAAA+AGG - chr5_1:17712159-17712178 None:intergenic 45.0%
TTCTGTTCGGGAAAAATCGG+TGG + chr5_1:17712170-17712189 Msa0721260:intron 45.0%
GTCTCTTGGCAACAAACACT+AGG + chr5_1:17712393-17712412 Msa0721260:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr5_1:17712451-17712470 Msa0721260:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr5_1:17712479-17712498 Msa0721260:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr5_1:17712482-17712501 Msa0721260:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr5_1:17712483-17712502 Msa0721260:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG + chr5_1:17712549-17712568 Msa0721260:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG - chr5_1:17712585-17712604 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG - chr5_1:17712586-17712605 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG - chr5_1:17712587-17712606 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr5_1:17712591-17712610 Msa0721260:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr5_1:17712592-17712611 Msa0721260:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG - chr5_1:17712721-17712740 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG - chr5_1:17712722-17712741 None:intergenic 45.0%
AAGTACCATGGGTTCGAAGT+GGG + chr5_1:17712813-17712832 Msa0721260:intron 45.0%
AATATCCCACTTCGAACCCA+TGG - chr5_1:17712821-17712840 None:intergenic 45.0%
!! GAGAAAGCTTTGAAGGGTGA+AGG + chr5_1:17712916-17712935 Msa0721260:intron 45.0%
CTCTCAAAACTTTATCCCCG+AGG - chr5_1:17713017-17713036 None:intergenic 45.0%
AGCAACAAAGGATACAACCG+CGG + chr5_1:17713038-17713057 Msa0721260:intron 45.0%
! TGACAAAGTCTTTGGCTCGT+CGG + chr5_1:17713094-17713113 Msa0721260:intron 45.0%
AGAACATTGAGGTGCGTCTT+GGG + chr5_1:17713214-17713233 Msa0721260:intron 45.0%
!! TGGTGCTGTTTAGAGGATGA+AGG + chr5_1:17713258-17713277 Msa0721260:intron 45.0%
GAAGGTGATGTTTCTCACCT+TGG + chr5_1:17713276-17713295 Msa0721260:intron 45.0%
AGGTGATGTTTCTCACCTTG+GGG + chr5_1:17713278-17713297 Msa0721260:intron 45.0%
! TACTCATGATCTACCGGTTG+AGG + chr5_1:17713378-17713397 Msa0721260:intron 45.0%
GAGGTTCAAGGAAGACATAG+TGG + chr5_1:17713403-17713422 Msa0721260:intron 45.0%
TTAGGTGGAGTTGAACACAC+CGG + chr5_1:17713466-17713485 Msa0721260:intron 45.0%
TATGCTCTAGTGGTGAGCAA+GGG + chr5_1:17713520-17713539 Msa0721260:intron 45.0%
AGAATGTATAGCACGGCTTG+TGG + chr5_1:17713580-17713599 Msa0721260:intron 45.0%
! CCAATCACCCTTGGACTTTT+AGG - chr5_1:17713612-17713631 None:intergenic 45.0%
CCTAAAAGTCCAAGGGTGAT+TGG + chr5_1:17713609-17713628 Msa0721260:intron 45.0%
TGGATGCAAGGTGATCTTCA+AGG + chr5_1:17713629-17713648 Msa0721260:intron 45.0%
CAAGGTGATCTTCAAGGAAG+CGG + chr5_1:17713635-17713654 Msa0721260:intron 45.0%
AAGGTGATCTTCAAGGAAGC+GGG + chr5_1:17713636-17713655 Msa0721260:intron 45.0%
GGAGATGTCTCGTATTGAAG+AGG + chr5_1:17713657-17713676 Msa0721260:intron 45.0%
! AGAGGTATGGTGAATGCTTG+TGG + chr5_1:17713675-17713694 Msa0721260:intron 45.0%
! CCAACTACGCTAGGAGTTTT+AGG - chr5_1:17713706-17713725 None:intergenic 45.0%
CCTAAAACTCCTAGCGTAGT+TGG + chr5_1:17713703-17713722 Msa0721260:intron 45.0%
ATGTCTTCCGCCTTCTTGAA+GGG - chr5_1:17713739-17713758 None:intergenic 45.0%
AATGTCTTCCGCCTTCTTGA+AGG - chr5_1:17713740-17713759 None:intergenic 45.0%
! CTCTAAAAGCCAAGGGTGAT+TGG + chr5_1:17713799-17713818 Msa0721260:intron 45.0%
TACTTGTTCCCAATCACCCT+TGG - chr5_1:17713811-17713830 None:intergenic 45.0%
GGAGATGTCTCGTATTGAAG+AGG + chr5_1:17713657-17713676 Msa0721260:intron 45.0%
GGATACAAGGATCTTCGAGA+AGG + chr5_1:17713915-17713934 Msa0721260:intron 45.0%
TACAAGGATCTTCGAGAAGG+CGG + chr5_1:17713918-17713937 Msa0721260:intron 45.0%
ACCTTAACCTCTTCAGCCAT+CGG - chr5_1:17713952-17713971 None:intergenic 45.0%
GAGGTTAAGGTGTGTACTTG+TGG + chr5_1:17713961-17713980 Msa0721260:intron 45.0%
CCTTGTGTCCAAACTACTCA+AGG - chr5_1:17714001-17714020 None:intergenic 45.0%
CCTTGAGTAGTTTGGACACA+AGG + chr5_1:17713998-17714017 Msa0721260:intron 45.0%
GGACACAAGGATCTTCAAAG+GGG + chr5_1:17714011-17714030 Msa0721260:intron 45.0%
TCCCAAAAGGCAGCCAAAAT+CGG - chr5_1:17712146-17712165 None:intergenic 45.0%
CGAACAGAAAACCTCCCAAA+AGG - chr5_1:17712159-17712178 None:intergenic 45.0%
TTCTGTTCGGGAAAAATCGG+TGG + chr5_1:17712170-17712189 Msa0721260:intron 45.0%
GTCTCTTGGCAACAAACACT+AGG + chr5_1:17712393-17712412 Msa0721260:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr5_1:17712451-17712470 Msa0721260:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr5_1:17712479-17712498 Msa0721260:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr5_1:17712482-17712501 Msa0721260:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr5_1:17712483-17712502 Msa0721260:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG + chr5_1:17712549-17712568 Msa0721260:intron 45.0%
TCCCCCATACTAGGTCAATT+TGG + chr5_1:17714679-17714698 Msa0721260:intron 45.0%
CGGTCCAAATTGACCTAGTA+TGG - chr5_1:17714686-17714705 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr5_1:17712591-17712610 Msa0721260:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr5_1:17712592-17712611 Msa0721260:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG - chr5_1:17712721-17712740 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG - chr5_1:17712722-17712741 None:intergenic 45.0%
TTCATCGAATCCGCAACAGA+TGG + chr5_1:17714855-17714874 Msa0721260:intron 45.0%
TGCAATCACCTGTTTGGCAA+CGG - chr5_1:17714893-17714912 None:intergenic 45.0%
!! TGGACTCCAATGTACTGGTT+GGG + chr5_1:17714917-17714936 Msa0721260:intron 45.0%
TACGACATCTCACTTGTCGA+TGG + chr5_1:17714999-17715018 Msa0721260:CDS 45.0%
CGATGGTTTCAACATCCCAA+TGG + chr5_1:17715016-17715035 Msa0721260:CDS 45.0%
!! AGGGCACTGTCCGTTAATAT+CGG - chr5_1:17715087-17715106 None:intergenic 45.0%
! TATTAACGGACAGTGCCCTA+AGG + chr5_1:17715088-17715107 Msa0721260:CDS 45.0%
CCTTGAGTCCTCAATTCCTT+AGG - chr5_1:17715107-17715126 None:intergenic 45.0%
CCTAAGGAATTGAGGACTCA+AGG + chr5_1:17715104-17715123 Msa0721260:CDS 45.0%
AAGGAATTGAGGACTCAAGG+TGG + chr5_1:17715107-17715126 Msa0721260:CDS 45.0%
! GTGGACCCACTTATTTCTCA+AGG + chr5_1:17715195-17715214 Msa0721260:CDS 45.0%
AGTACTTTCACTTGTCCTGC+TGG + chr5_1:17715272-17715291 Msa0721260:CDS 45.0%
TCAATATGAGGAGCTCCAAG+AGG - chr5_1:17715323-17715342 None:intergenic 45.0%
! TACACACTGGTCTGGTTTAG+TGG - chr5_1:17715350-17715369 None:intergenic 45.0%
! GGGAGCATAGTGTGAATGTG+AGG - chr5_1:17711842-17711861 None:intergenic 50.0%
AGGAGTGAGGGTGAGTAGTA+GGG - chr5_1:17711862-17711881 None:intergenic 50.0%
AAGGAGTGAGGGTGAGTAGT+AGG - chr5_1:17711863-17711882 None:intergenic 50.0%
AGAGGTTCCATGTTTGACCG+CGG - chr5_1:17711971-17711990 None:intergenic 50.0%
CGGTCAAACATGGAACCTCT+GGG + chr5_1:17711971-17711990 Msa0721260:intron 50.0%
TGGAACCTCTGGGTTAATCC+TGG + chr5_1:17711981-17712000 Msa0721260:intron 50.0%
TACCGCCATGGCTCGTATTT+GGG + chr5_1:17712004-17712023 Msa0721260:intron 50.0%
GTACAAATCGGTGGCCGATT+TGG + chr5_1:17712109-17712128 Msa0721260:intron 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG + chr5_1:17712117-17712136 Msa0721260:intron 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG + chr5_1:17712120-17712139 Msa0721260:intron 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG - chr5_1:17712126-17712145 None:intergenic 50.0%
!! GGAAAATCGGTGGCCGATTT+TGG + chr5_1:17712130-17712149 Msa0721260:intron 50.0%
!!! GCCGATTTTGGCTGCCTTTT+GGG + chr5_1:17712142-17712161 Msa0721260:intron 50.0%
!!! GATTTTGGCTGCCTTTTGGG+AGG + chr5_1:17712145-17712164 Msa0721260:intron 50.0%
GGAAAAATCGGTGGCCGATT+GGG + chr5_1:17712179-17712198 Msa0721260:intron 50.0%
GGTGGCCGATTGGGAAAAAT+CGG + chr5_1:17712188-17712207 Msa0721260:intron 50.0%
!!! GGCCACCGATTTTTCCCAAT+CGG - chr5_1:17712196-17712215 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG + chr5_1:17712328-17712347 Msa0721260:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG + chr5_1:17712329-17712348 Msa0721260:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr5_1:17712457-17712476 Msa0721260:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + chr5_1:17712581-17712600 Msa0721260:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG - chr5_1:17712588-17712607 None:intergenic 50.0%
ATCCTTTGACCTTTGCCCCA+CGG - chr5_1:17712789-17712808 None:intergenic 50.0%
CAAGTACCATGGGTTCGAAG+TGG + chr5_1:17712812-17712831 Msa0721260:intron 50.0%
GAAGGGTGAAGGTTCGTTAC+CGG + chr5_1:17712927-17712946 Msa0721260:intron 50.0%
! AGTGCCATTGTCTTGTGCCT+CGG + chr5_1:17712997-17713016 Msa0721260:intron 50.0%
GACTGTCATGGAGCTACTTG+TGG + chr5_1:17713164-17713183 Msa0721260:intron 50.0%
GAGAACATTGAGGTGCGTCT+TGG + chr5_1:17713213-17713232 Msa0721260:intron 50.0%
GAACATTGAGGTGCGTCTTG+GGG + chr5_1:17713215-17713234 Msa0721260:intron 50.0%
!! GATGGTGTGGTGCTGTTTAG+AGG + chr5_1:17713251-17713270 Msa0721260:intron 50.0%
GGTGATGTTTCTCACCTTGG+GGG + chr5_1:17713279-17713298 Msa0721260:intron 50.0%
CACTCAACATCAACCTGGAG+AGG + chr5_1:17713343-17713362 Msa0721260:intron 50.0%
TCAACATCAACCTGGAGAGG+CGG + chr5_1:17713346-17713365 Msa0721260:intron 50.0%
! TCATGATCTACCGGTTGAGG+TGG + chr5_1:17713381-17713400 Msa0721260:intron 50.0%
GAGGTTGGAAGCTCAGCTTT+AGG + chr5_1:17713448-17713467 Msa0721260:intron 50.0%
!! GTTGGAAGCTCAGCTTTAGG+TGG + chr5_1:17713451-17713470 Msa0721260:intron 50.0%
TAGGTGGAGTTGAACACACC+GGG + chr5_1:17713467-17713486 Msa0721260:intron 50.0%
CTCCATAGTCGTACCATTCC+CGG - chr5_1:17713488-17713507 None:intergenic 50.0%
GTACGACTATGGAGGACCTT+GGG + chr5_1:17713494-17713513 Msa0721260:intron 50.0%
CTATGCTCTAGTGGTGAGCA+AGG + chr5_1:17713519-17713538 Msa0721260:intron 50.0%
!! CATGAAGACGGAAGGCATTC+CGG + chr5_1:17713550-17713569 Msa0721260:intron 50.0%
TCCAAGGGTGATTGGATGCA+AGG + chr5_1:17713617-17713636 Msa0721260:intron 50.0%
ACCTTGCATCCAATCACCCT+TGG - chr5_1:17713621-17713640 None:intergenic 50.0%
ACTGCAAGGACCCTTCAAGA+AGG + chr5_1:17713726-17713745 Msa0721260:intron 50.0%
AGAAGGCGGAAGACATTCTG+AGG + chr5_1:17713743-17713762 Msa0721260:intron 50.0%
GAAGGCGGAAGACATTCTGA+GGG + chr5_1:17713744-17713763 Msa0721260:intron 50.0%
! AAGACATTCTGAGGGCTGGA+GGG + chr5_1:17713752-17713771 Msa0721260:intron 50.0%
GGGGTTGAGGTGTATACTTG+TGG + chr5_1:17713772-17713791 Msa0721260:intron 50.0%
AGACATTCCGATGGCTGAAG+AGG + chr5_1:17713942-17713961 Msa0721260:intron 50.0%
TCCGATGGCTGAAGAGGTTA+AGG + chr5_1:17713948-17713967 Msa0721260:intron 50.0%
CACAAGGATCTTCAAAGGGG+CGG + chr5_1:17714014-17714033 Msa0721260:intron 50.0%
!! TGTGGAGCTACTTGGTGTAG+TGG + chr5_1:17714075-17714094 Msa0721260:intron 50.0%
!! GTGGAGCTACTTGGTGTAGT+GGG + chr5_1:17714076-17714095 Msa0721260:intron 50.0%
!! ACTTGGTGTAGTGGGAAGCA+AGG + chr5_1:17714084-17714103 Msa0721260:intron 50.0%
! CTTGGTGTAGTGGGAAGCAA+GGG + chr5_1:17714085-17714104 Msa0721260:intron 50.0%
AAGCAAGGGAAAGAGCAGCA+AGG + chr5_1:17714099-17714118 Msa0721260:intron 50.0%
GTACAAATCGGTGGCCGATT+TGG + chr5_1:17712109-17712128 Msa0721260:intron 50.0%
!! CGGTGGCCGATTTGGAAAAT+CGG + chr5_1:17712117-17712136 Msa0721260:intron 50.0%
!! TGGCCGATTTGGAAAATCGG+TGG + chr5_1:17712120-17712139 Msa0721260:intron 50.0%
!!! CGGCCACCGATTTTCCAAAT+CGG - chr5_1:17712126-17712145 None:intergenic 50.0%
!! GGAAAATCGGTGGCCGATTT+TGG + chr5_1:17712130-17712149 Msa0721260:intron 50.0%
!!! GCCGATTTTGGCTGCCTTTT+GGG + chr5_1:17712142-17712161 Msa0721260:intron 50.0%
!!! GATTTTGGCTGCCTTTTGGG+AGG + chr5_1:17712145-17712164 Msa0721260:intron 50.0%
AGATAGAGGGGGCTGAAACA+AGG + chr5_1:17712328-17712347 Msa0721260:intron 50.0%
GATAGAGGGGGCTGAAACAA+GGG + chr5_1:17712329-17712348 Msa0721260:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr5_1:17712457-17712476 Msa0721260:intron 50.0%
TGCCAAACAGGTGATTGCAC+CGG + chr5_1:17714894-17714913 Msa0721260:intron 50.0%
ACCAGTACATTGGAGTCCAC+CGG - chr5_1:17714916-17714935 None:intergenic 50.0%
! GTGGACTCCAATGTACTGGT+TGG + chr5_1:17714916-17714935 Msa0721260:intron 50.0%
!! GGACTCCAATGTACTGGTTG+GGG + chr5_1:17714918-17714937 Msa0721260:intron 50.0%
GACAGTGCCCTAAGGAATTG+AGG + chr5_1:17715096-17715115 Msa0721260:CDS 50.0%
ACTAATGGCCAAGGAAGCTG+TGG + chr5_1:17715176-17715195 Msa0721260:CDS 50.0%
GGCTGCTTGTGAAGGAGTGA+GGG - chr5_1:17711874-17711893 None:intergenic 55.0%
TGGCTGCTTGTGAAGGAGTG+AGG - chr5_1:17711875-17711894 None:intergenic 55.0%
CAGCTGCCCAAACGGTGTAA+GGG - chr5_1:17711920-17711939 None:intergenic 55.0%
GCGGTCAAACATGGAACCTC+TGG + chr5_1:17711970-17711989 Msa0721260:intron 55.0%
CGGTACCAGGATTAACCCAG+AGG - chr5_1:17711989-17712008 None:intergenic 55.0%
GGTTAATCCTGGTACCGCCA+TGG + chr5_1:17711992-17712011 Msa0721260:intron 55.0%
GTACCGCCATGGCTCGTATT+TGG + chr5_1:17712003-17712022 Msa0721260:intron 55.0%
ACCGCCATGGCTCGTATTTG+GGG + chr5_1:17712005-17712024 Msa0721260:intron 55.0%
ACCCCAAATACGAGCCATGG+CGG - chr5_1:17712009-17712028 None:intergenic 55.0%
!! CGCACCGGTTGCAACTTTGA+TGG + chr5_1:17712029-17712048 Msa0721260:intron 55.0%
!!! GGCCGATTTTGGCTGCCTTT+TGG + chr5_1:17712141-17712160 Msa0721260:intron 55.0%
GGGAAAAATCGGTGGCCGAT+TGG + chr5_1:17712178-17712197 Msa0721260:intron 55.0%
GGCCGATTGGGAAAAATCGG+TGG + chr5_1:17712191-17712210 Msa0721260:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr5_1:17712461-17712480 Msa0721260:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr5_1:17712462-17712481 Msa0721260:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr5_1:17712468-17712487 Msa0721260:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr5_1:17712469-17712488 Msa0721260:intron 55.0%
TTTGACCTTTGCCCCACGGT+GGG - chr5_1:17712785-17712804 None:intergenic 55.0%
!! GAAGACCGAGATGGTGGACA+AGG + chr5_1:17712969-17712988 Msa0721260:intron 55.0%
GCACAAGACAATGGCACTCC+TGG - chr5_1:17712995-17713014 None:intergenic 55.0%
! GTGCCATTGTCTTGTGCCTC+GGG + chr5_1:17712998-17713017 Msa0721260:intron 55.0%
TGCCATTGTCTTGTGCCTCG+GGG + chr5_1:17712999-17713018 Msa0721260:intron 55.0%
ATCCCCGAGGCACAAGACAA+TGG - chr5_1:17713004-17713023 None:intergenic 55.0%
!! ATACAACCGCGGCATCGATG+TGG + chr5_1:17713049-17713068 Msa0721260:intron 55.0%
CTTTGACCACATCGATGCCG+CGG - chr5_1:17713058-17713077 None:intergenic 55.0%
ATTCTTACCACCGCCTCTCC+AGG - chr5_1:17713359-17713378 None:intergenic 55.0%
! TGATCTACCGGTTGAGGTGG+AGG + chr5_1:17713384-17713403 Msa0721260:intron 55.0%
CCTTGAACCTCCACCTCAAC+CGG - chr5_1:17713394-17713413 None:intergenic 55.0%
GGAGTTGAACACACCGGGAA+TGG + chr5_1:17713472-17713491 Msa0721260:intron 55.0%
CACCGGGAATGGTACGACTA+TGG + chr5_1:17713483-17713502 Msa0721260:intron 55.0%
CGGGAATGGTACGACTATGG+AGG + chr5_1:17713486-17713505 Msa0721260:intron 55.0%
GGTACGACTATGGAGGACCT+TGG + chr5_1:17713493-17713512 Msa0721260:intron 55.0%
CCACTAGAGCATAGCACCCA+AGG - chr5_1:17713513-17713532 None:intergenic 55.0%
! CCTTGGGTGCTATGCTCTAG+TGG + chr5_1:17713510-17713529 Msa0721260:intron 55.0%
CCTTGCAGTCCAACTACGCT+AGG - chr5_1:17713715-17713734 None:intergenic 55.0%
CCTAGCGTAGTTGGACTGCA+AGG + chr5_1:17713712-17713731 Msa0721260:intron 55.0%
GCAAGGACCCTTCAAGAAGG+CGG + chr5_1:17713729-17713748 Msa0721260:intron 55.0%
! GAAGACATTCTGAGGGCTGG+AGG + chr5_1:17713751-17713770 Msa0721260:intron 55.0%
! AGACATTCTGAGGGCTGGAG+GGG + chr5_1:17713753-17713772 Msa0721260:intron 55.0%
GAAGGCGGAAGACATTCCGA+TGG + chr5_1:17713933-17713952 Msa0721260:intron 55.0%
AGGATCTTCAAAGGGGCGGA+AGG + chr5_1:17714018-17714037 Msa0721260:intron 55.0%
!!! GGCCGATTTTGGCTGCCTTT+TGG + chr5_1:17712141-17712160 Msa0721260:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr5_1:17712461-17712480 Msa0721260:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr5_1:17712462-17712481 Msa0721260:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr5_1:17712468-17712487 Msa0721260:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr5_1:17712469-17712488 Msa0721260:intron 55.0%
GAATCCGCAACAGATGGCAG+CGG + chr5_1:17714861-17714880 Msa0721260:intron 55.0%
CACCGGTGCAATCACCTGTT+TGG - chr5_1:17714899-17714918 None:intergenic 55.0%
CAAACAGGTGATTGCACCGG+TGG + chr5_1:17714897-17714916 Msa0721260:intron 55.0%
! ACCGGTGGACTCCAATGTAC+TGG + chr5_1:17714912-17714931 Msa0721260:intron 55.0%
GGACACCCCAACCAGTACAT+TGG - chr5_1:17714926-17714945 None:intergenic 55.0%
AAGTGGGTCCACAGCTTCCT+TGG - chr5_1:17715187-17715206 None:intergenic 55.0%
GCAGCTGCCCAAACGGTGTA+AGG - chr5_1:17711921-17711940 None:intergenic 60.0%
!! TGGGCTAGCAGCTGCCCAAA+CGG - chr5_1:17711928-17711947 None:intergenic 60.0%
ATGTTTGACCGCGGTCGAGG+CGG - chr5_1:17711962-17711981 None:intergenic 60.0%
TCCATGTTTGACCGCGGTCG+AGG - chr5_1:17711965-17711984 None:intergenic 60.0%
ATACGAGCCATGGCGGTACC+AGG - chr5_1:17712002-17712021 None:intergenic 60.0%
GCGACCCCAAATACGAGCCA+TGG - chr5_1:17712012-17712031 None:intergenic 60.0%
! GCTCGTATTTGGGGTCGCAC+CGG + chr5_1:17712014-17712033 Msa0721260:intron 60.0%
ACGGTGGGCGCCAATTGTTG+CGG - chr5_1:17712770-17712789 None:intergenic 60.0%
CAACAATTGGCGCCCACCGT+GGG + chr5_1:17712770-17712789 Msa0721260:intron 60.0%
AACAATTGGCGCCCACCGTG+GGG + chr5_1:17712771-17712790 Msa0721260:intron 60.0%
CTTTGACCTTTGCCCCACGG+TGG - chr5_1:17712786-17712805 None:intergenic 60.0%
CACCGTGGGGCAAAGGTCAA+AGG + chr5_1:17712784-17712803 Msa0721260:intron 60.0%
ACCGGTCACCATGACACGAG+CGG + chr5_1:17712945-17712964 Msa0721260:intron 60.0%
TCCGCTCGTGTCATGGTGAC+CGG - chr5_1:17712949-17712968 None:intergenic 60.0%
GGTCTTCTCCGCTCGTGTCA+TGG - chr5_1:17712956-17712975 None:intergenic 60.0%
ACGAGCGGAGAAGACCGAGA+TGG + chr5_1:17712960-17712979 Msa0721260:intron 60.0%
AGCGGAGAAGACCGAGATGG+TGG + chr5_1:17712963-17712982 Msa0721260:intron 60.0%
!! CCTGGCCTTGTCCACCATCT+CGG - chr5_1:17712977-17712996 None:intergenic 60.0%
TGAGGTGCGTCTTGGGGATG+CGG + chr5_1:17713221-17713240 Msa0721260:intron 60.0%
! ATGCGGGTGCTCTGATGGTG+TGG + chr5_1:17713238-17713257 Msa0721260:intron 60.0%
TCTACCAGGCATCACCCCCA+AGG - chr5_1:17713296-17713315 None:intergenic 60.0%
CAGACGATCACCGCTCTACC+AGG - chr5_1:17713310-17713329 None:intergenic 60.0%
CTGGTAGAGCGGTGATCGTC+TGG + chr5_1:17713308-17713327 Msa0721260:intron 60.0%
ACATCAACCTGGAGAGGCGG+TGG + chr5_1:17713349-17713368 Msa0721260:intron 60.0%
CCGGTTGAGGTGGAGGTTCA+AGG + chr5_1:17713391-17713410 Msa0721260:intron 60.0%
!! GAAGACGGAAGGCATTCCGG+AGG + chr5_1:17713553-17713572 Msa0721260:intron 60.0%
! GCGGAAGACATTCTGAGGGC+TGG + chr5_1:17713748-17713767 Msa0721260:intron 60.0%
GCTGCTCTCTCCCCCATACT+AGG + chr5_1:17714670-17714689 Msa0721260:intron 60.0%
ACGACCGCTGCCATCTGTTG+CGG - chr5_1:17714868-17714887 None:intergenic 60.0%
GTTTGGGCAGCTGCTAGCCC+AGG + chr5_1:17711927-17711946 Msa0721260:CDS 65.0%
GCCTCGACCGCGGTCAAACA+TGG + chr5_1:17711961-17711980 Msa0721260:intron 65.0%
GCTGCTCTCTCCCCCAGACT+AGG + chr5_1:17712572-17712591 Msa0721260:intron 65.0%
GCAACAATTGGCGCCCACCG+TGG + chr5_1:17712769-17712788 Msa0721260:intron 65.0%
!! CCGAGATGGTGGACAAGGCC+AGG + chr5_1:17712974-17712993 Msa0721260:intron 65.0%
GAGGTGCGTCTTGGGGATGC+GGG + chr5_1:17713222-17713241 Msa0721260:intron 65.0%
TGGGGATGCGGGTGCTCTGA+TGG + chr5_1:17713233-17713252 Msa0721260:intron 65.0%
CTCACCTTGGGGGTGATGCC+TGG + chr5_1:17713289-17713308 Msa0721260:intron 65.0%
GGGGGTGATGCCTGGTAGAG+CGG + chr5_1:17713297-17713316 Msa0721260:intron 65.0%
TCTGAGGGCTGGAGGGGTTG+AGG + chr5_1:17713759-17713778 Msa0721260:intron 65.0%
GCAACAGATGGCAGCGGTCG+TGG + chr5_1:17714867-17714886 Msa0721260:intron 65.0%
GGTCGTGGCCGTTGCCAAAC+AGG + chr5_1:17714882-17714901 Msa0721260:intron 65.0%
TGGGCAGCTGCTAGCCCAGG+CGG + chr5_1:17711930-17711949 Msa0721260:CDS 70.0%
GCAGCTGCTAGCCCAGGCGG+TGG + chr5_1:17711933-17711952 Msa0721260:CDS 75.0%
TGGCGCCCACCGTGGGGCAA+AGG + chr5_1:17712777-17712796 Msa0721260:intron 75.0%
! CGAGGCGGCGACCACCGCCT+GGG - chr5_1:17711947-17711966 None:intergenic 80.0%
! TCGAGGCGGCGACCACCGCC+TGG - chr5_1:17711948-17711967 None:intergenic 80.0%
! GGTGGTCGCCGCCTCGACCG+CGG + chr5_1:17711951-17711970 Msa0721260:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17711822 17715373 17711822 ID=Msa0721260;Name=Msa0721260
chr5_1 mRNA 17711822 17715373 17711822 ID=Msa0721260-mRNA-1;Parent=Msa0721260;Name=Msa0721260-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|176
chr5_1 exon 17711822 17711972 17711822 ID=Msa0721260-mRNA-1:exon:6795;Parent=Msa0721260-mRNA-1
chr5_1 exon 17714994 17715373 17714994 ID=Msa0721260-mRNA-1:exon:6796;Parent=Msa0721260-mRNA-1
chr5_1 CDS 17711822 17711972 17711822 ID=Msa0721260-mRNA-1:cds;Parent=Msa0721260-mRNA-1
chr5_1 CDS 17714994 17715373 17714994 ID=Msa0721260-mRNA-1:cds;Parent=Msa0721260-mRNA-1
Gene Sequence

>Msa0721260

ATGACTTTCATATCAATCCTCACATTCACACTATGCTCCCTACTACTCACCCTCACTCCTTCACAAGCAGCCAACTTTGAGATCGTCAACAATTGCCCTTACACCGTTTGGGCAGCTGCTAGCCCAGGCGGTGGTCGCCGCCTCGACCGCGATTTCTACGACATCTCACTTGTCGATGGTTTCAACATCCCAATGGATTTCTTCCCTCTTAATGGTGGATGTCATAAAATCAGTTGCACTGCCGATATTAACGGACAGTGCCCTAAGGAATTGAGGACTCAAGGTGGTTGTAACAACCCTTGTACAGTTTTTAAGACCAATGAATATTGTTGCACTAATGGCCAAGGAAGCTGTGGACCCACTTATTTCTCAAGGTTTTTTAAGGATAGGTGTCATGATTCATACAGTTACCCTCAAGATGATCCAACAAGTACTTTCACTTGTCCTGCTGGATCTAACTACAAAGTTGTTTTCTGTCCTCTTGGAGCTCCTCATATTGAGATGCCACTAAACCAGACCAGTGTGTATTGA

Protein sequence

>Msa0721260

MTFISILTFTLCSLLLTLTPSQAANFEIVNNCPYTVWAAASPGGGRRLDRDFYDISLVDGFNIPMDFFPLNGGCHKISCTADINGQCPKELRTQGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLNQTSVY*