AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312300 MtrunA17_Chr2g0281411 98.962 289 3 0 1 289 1 289 0.0 586
Msa0312300 MtrunA17_Chr4g0047981 75.563 311 53 2 1 288 1 311 1.98e-164 459
Msa0312300 MtrunA17_Chr4g0022441 66.343 309 77 3 3 288 2 306 3.76e-140 397
Msa0312300 MtrunA17_Chr5g0409961 61.905 273 91 4 1 268 1 265 8.98e-125 357
Msa0312300 MtrunA17_Chr2g0323921 66.176 136 45 1 153 288 66 200 1.70e-58 186
Msa0312300 MtrunA17_Chr2g0323931 42.424 99 31 2 3 79 4 98 4.25e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312300 AT1G61250.1 72.509 291 75 3 1 288 1 289 3.84e-159 445
Msa0312300 AT1G11180.1 69.966 293 81 3 1 288 1 291 4.24e-152 427
Msa0312300 AT1G11180.3 67.918 293 80 4 1 288 1 284 3.23e-144 407
Msa0312300 AT1G61250.2 73.004 263 66 3 1 260 1 261 4.98e-144 406
Msa0312300 AT2G20840.1 70.280 286 80 2 3 288 2 282 6.89e-143 403
Msa0312300 AT1G11180.2 65.033 306 80 4 1 288 1 297 1.26e-141 400
Msa0312300 AT1G03550.1 64.685 286 97 1 3 288 2 283 8.12e-134 380
Msa0312300 AT2G20840.3 75.314 239 59 0 50 288 1 239 2.45e-129 367
Msa0312300 AT2G20840.2 75.314 239 59 0 50 288 1 239 2.45e-129 367
Msa0312300 AT1G32050.1 61.624 271 94 3 1 269 1 263 8.31e-123 352
Msa0312300 AT1G03550.4 64.729 258 87 1 3 260 2 255 4.92e-120 345
Msa0312300 AT1G03550.3 68.610 223 70 0 66 288 2 224 2.11e-109 316
Msa0312300 AT1G03550.5 64.135 237 81 1 3 239 2 234 2.11e-107 312
Msa0312300 AT1G03550.6 66.818 220 69 1 3 222 2 217 1.83e-103 301
Msa0312300 AT1G03550.2 68.571 210 66 0 79 288 15 224 9.16e-102 297
Msa0312300 AT1G03550.7 66.667 198 62 1 3 200 2 195 1.42e-96 283

Find 102 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATATCATGATGGATAAT+TGG 0.184182 2_4:+7311407 None:intergenic
GCAACTGTTGTGTTGTTAAA+AGG 0.217095 2_4:+7313498 None:intergenic
CAACTAGAAAATAATTAAAA+TGG 0.224025 2_4:+7313628 None:intergenic
GCAGATTACAACTATGGTTT+TGG 0.226168 2_4:-7312750 Msa0312300:CDS
ACCGACAGTGCTATTAAATT+TGG 0.229795 2_4:-7309644 Msa0312300:CDS
AACCATTATATCGTGCATTT+AGG 0.262649 2_4:-7310657 Msa0312300:intron
ATTGGTGACTATACTATTAT+TGG 0.271514 2_4:-7308949 Msa0312300:CDS
GTCACCGCAGCTTGGATTAA+AGG 0.279800 2_4:-7310848 Msa0312300:CDS
TATTTGTAACACAATTTCTA+TGG 0.283994 2_4:+7308363 None:intergenic
TTGAAACATTGGTCAGCGTC+TGG 0.297966 2_4:-7308662 Msa0312300:CDS
TACTTCATAGCAGGGGTTCC+TGG 0.299994 2_4:-7310700 Msa0312300:CDS
AAAAGGGAAGAAAGGAGATT+TGG 0.310493 2_4:+7313515 None:intergenic
TTGGTGACTATACTATTATT+GGG 0.324018 2_4:-7308948 Msa0312300:CDS
TACCTAAATGCACGATATAA+TGG 0.351386 2_4:+7310655 None:intergenic
GAACGTGCAGATTACAACTA+TGG 0.367642 2_4:-7312756 Msa0312300:CDS
CGATATCATGATGGATAATT+GGG 0.375064 2_4:+7311408 None:intergenic
AATGGGAGTTTAGAGACTTT+AGG 0.375455 2_4:+7313646 None:intergenic
TCAATTCAGCCTCCTTGGCT+TGG 0.376025 2_4:+7312543 None:intergenic
AAAGAGGTACTTACAGCAAA+AGG 0.387143 2_4:+7313380 None:intergenic
TAGTTGTAATCTGCACGTTC+AGG 0.387808 2_4:+7312759 None:intergenic
AAAGGGAAGAAAGGAGATTT+GGG 0.389982 2_4:+7313516 None:intergenic
AGAAAGGAGATTTGGGACTT+TGG 0.394195 2_4:+7313523 None:intergenic
GAAGCTGCACTAGGAGCAAT+GGG 0.395431 2_4:-7308459 Msa0312300:CDS
TCTTATGCAAGAGAACAAAA+TGG 0.396216 2_4:+7313598 None:intergenic
TGAAGTCTTTGAAGGTGAAC+TGG 0.396433 2_4:+7311374 None:intergenic
CCCTGCTATGAAGTAGATAA+TGG 0.406046 2_4:+7310708 None:intergenic
TTCTGCTTACAGCTTCACCT+TGG 0.408495 2_4:-7309522 Msa0312300:intron
TCTGCTTACAGCTTCACCTT+GGG 0.416242 2_4:-7309521 Msa0312300:intron
GCCATTATCTACTTCATAGC+AGG 0.420275 2_4:-7310709 Msa0312300:CDS
CAACATATTGAAGTCTTTGA+AGG 0.421218 2_4:+7311366 None:intergenic
ATTAACAAACCACATATAAC+AGG 0.421811 2_4:+7308296 None:intergenic
ATAGTCACCAATCACATCTA+TGG 0.429556 2_4:+7308960 None:intergenic
ACATAAACTACCTCGTGAAA+TGG 0.432174 2_4:+7311731 None:intergenic
TGCTTGTTTCTATCATCTCA+TGG 0.432407 2_4:-7313447 Msa0312300:exon
AAAGAATGAAGAAGTTGTTA+TGG 0.438294 2_4:+7313549 None:intergenic
GGTTAGTGTTGTGCCTTACA+TGG 0.440099 2_4:-7310883 Msa0312300:CDS
TTGTTATTGAGGAGAAGAAT+TGG 0.449340 2_4:-7311442 Msa0312300:CDS
GGTCAGCGTCTGGGTTATCC+AGG 0.451468 2_4:-7308652 Msa0312300:intron
TGAATTGAGAAAACGAGAAC+AGG 0.474757 2_4:-7312528 Msa0312300:intron
GTTGACTTGTTCTTCGTCGA+AGG 0.476933 2_4:+7313403 None:intergenic
AACTAGAAAATAATTAAAAT+GGG 0.478241 2_4:+7313629 None:intergenic
GCTTATTTGTCCAAAAGAAA+AGG 0.479934 2_4:+7308170 None:intergenic
ATGAAGAAGTTGTTATGGTA+AGG 0.491405 2_4:+7313554 None:intergenic
GGAAGCTGCACTAGGAGCAA+TGG 0.491496 2_4:-7308460 Msa0312300:CDS
AAATGTAGACACTAAGTGAT+TGG 0.492656 2_4:-7308257 Msa0312300:three_prime_UTR
TTGACTTGTTCTTCGTCGAA+GGG 0.494587 2_4:+7313404 None:intergenic
TGTTTCTATCATCTCATGGC+CGG 0.497732 2_4:-7313443 Msa0312300:exon
TGCAGCTGGAATTGTTATTG+AGG 0.499709 2_4:-7311453 Msa0312300:intron
CAGCTACAACATTCCATGTA+AGG 0.505530 2_4:+7310870 None:intergenic
CGTTCAGGATTAAGAGGTGC+AGG 0.511081 2_4:+7312774 None:intergenic
GCAGGTCTAGAATTTGTGGC+AGG 0.511524 2_4:+7312792 None:intergenic
AACATGCTACCTGTTATATG+TGG 0.515170 2_4:-7308305 Msa0312300:three_prime_UTR
GTGTTGTTAAAAGGGAAGAA+AGG 0.517573 2_4:+7313507 None:intergenic
CAACTGTTGTGTTGTTAAAA+GGG 0.518039 2_4:+7313499 None:intergenic
AGGTGCAGGTCTAGAATTTG+TGG 0.525747 2_4:+7312788 None:intergenic
CCATTATCTACTTCATAGCA+GGG 0.528046 2_4:-7310708 Msa0312300:CDS
TTTCCTTTGAAAACTATAGG+AGG 0.529946 2_4:+7309474 None:intergenic
TCCTTTGAAAACTATAGGAG+GGG 0.531178 2_4:+7309476 None:intergenic
ATTGTTCTGTCTTGAAACAT+TGG 0.534016 2_4:-7308673 Msa0312300:CDS
TTTCATTCGCGATATCATGA+TGG 0.535225 2_4:+7311399 None:intergenic
TCTGCACGTTCAGGATTAAG+AGG 0.535265 2_4:+7312768 None:intergenic
AAGAGGTACTTACAGCAAAA+GGG 0.537767 2_4:+7313381 None:intergenic
CTGTCAGCCATAGATGTGAT+TGG 0.539516 2_4:-7308967 Msa0312300:CDS
TGAAACATTGGTCAGCGTCT+GGG 0.544642 2_4:-7308661 Msa0312300:CDS
GATATAATGGTTTATACCAC+AGG 0.549797 2_4:+7310668 None:intergenic
TTCCTTTGAAAACTATAGGA+GGG 0.549800 2_4:+7309475 None:intergenic
ACATTTATATTGCCTTCAGA+AGG 0.555762 2_4:+7308416 None:intergenic
ACAGTGCTATTAAATTTGGA+TGG 0.559045 2_4:-7309640 Msa0312300:CDS
GTAAGACTGCTGAGATGAAG+AGG 0.560995 2_4:-7308482 Msa0312300:CDS
TCCAAATTTAATAGCACTGT+CGG 0.561192 2_4:+7309643 None:intergenic
ATGAAGAGGGAAGCTGCACT+AGG 0.565664 2_4:-7308468 Msa0312300:CDS
AGGTCTAGAATTTGTGGCAG+GGG 0.572011 2_4:+7312794 None:intergenic
TATATGTACTTCCGTGGCGG+TGG 0.574961 2_4:-7308504 Msa0312300:CDS
TTCTCCTTTAATCCAAGCTG+CGG 0.576908 2_4:+7310844 None:intergenic
CAGAGGAGAATACAAGAAAG+TGG 0.577905 2_4:+7313476 None:intergenic
GGGGTTACTGTCGTAACGAC+CGG 0.580055 2_4:+7313424 None:intergenic
TACGATGAAGCACCTTCTGA+AGG 0.580180 2_4:-7308428 Msa0312300:exon
GTTTAGAGACTTTAGGACAC+AGG 0.582504 2_4:+7313653 None:intergenic
TACCACAGGACATATGCTCC+AGG 0.584654 2_4:+7310682 None:intergenic
TTGTAGCTGTCACCGCAGCT+TGG 0.586800 2_4:-7310856 Msa0312300:CDS
GGAAAGAGAACTCCAAGCCA+AGG 0.588085 2_4:-7312555 Msa0312300:CDS
AGCTGCACTAGGAGCAATGG+GGG 0.596542 2_4:-7308457 Msa0312300:CDS
CAGGTCTAGAATTTGTGGCA+GGG 0.602674 2_4:+7312793 None:intergenic
TCAAAATGCAGGAAGTAAGA+CGG 0.604251 2_4:-7311764 Msa0312300:intron
AGAGACTTTAGGACACAGGA+AGG 0.612154 2_4:+7313657 None:intergenic
TGACTTGTTCTTCGTCGAAG+GGG 0.613556 2_4:+7313405 None:intergenic
TTCCTGGAGCATATGTCCTG+TGG 0.615005 2_4:-7310684 Msa0312300:CDS
TGGTGACTATACTATTATTG+GGG 0.621523 2_4:-7308947 Msa0312300:intron
TATACCTCTTGATGCATCAA+CGG 0.625805 2_4:-7312715 Msa0312300:intron
CAGCTAAGATACAGAACCCA+AGG 0.627459 2_4:+7309505 None:intergenic
GCAGCTTGGATTAAAGGAGA+AGG 0.634562 2_4:-7310842 Msa0312300:intron
CAAGTATATATGTACTTCCG+TGG 0.637194 2_4:-7308510 Msa0312300:CDS
CATTATCTACTTCATAGCAG+GGG 0.639342 2_4:-7310707 Msa0312300:CDS
AGAAACAAGCAAGCAAGCAG+AGG 0.644380 2_4:+7313459 None:intergenic
CATACCGTTGATGCATCAAG+AGG 0.650424 2_4:+7312711 None:intergenic
CAGCAGTCTTACCACCGCCA+CGG 0.656707 2_4:+7308493 None:intergenic
GAGACTTTAGGACACAGGAA+GGG 0.665839 2_4:+7313658 None:intergenic
TAAGACTGCTGAGATGAAGA+GGG 0.669382 2_4:-7308481 Msa0312300:CDS
AAGCTGCACTAGGAGCAATG+GGG 0.689730 2_4:-7308458 Msa0312300:CDS
AAGAGAACTCCAAGCCAAGG+AGG 0.704365 2_4:-7312552 Msa0312300:CDS
GTATATATGTACTTCCGTGG+CGG 0.712863 2_4:-7308507 Msa0312300:CDS
AAAGAAGAAGCCATTTCACG+AGG 0.714436 2_4:-7311741 Msa0312300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAGAAAATAATTAAAAT+GGG + chr2_4:7308215-7308234 None:intergenic 10.0%
!!! CTATATTATTTTTTAAACAT+TGG - chr2_4:7309831-7309850 Msa0312300:intron 10.0%
!!! TTTTAGTCATTTATATATTT+GGG + chr2_4:7310711-7310730 None:intergenic 10.0%
!!! ATTTTAACTTATTCTTAAAA+CGG - chr2_4:7313231-7313250 Msa0312300:intron 10.0%
!! CAACTAGAAAATAATTAAAA+TGG + chr2_4:7308216-7308235 None:intergenic 15.0%
!!! AAAAGTTATTTTTAGAAAAG+AGG + chr2_4:7308480-7308499 None:intergenic 15.0%
!!! AATTATTTCTTTTTGGATTT+TGG - chr2_4:7308568-7308587 Msa0312300:intron 15.0%
!!! ATTATTTCTTTTTGGATTTT+GGG - chr2_4:7308569-7308588 Msa0312300:intron 15.0%
!! TTAAAATGAAACATGAAAAT+TGG + chr2_4:7308656-7308675 None:intergenic 15.0%
!! TTTAAAAAAATTCAGAATTC+TGG - chr2_4:7309016-7309035 Msa0312300:intron 15.0%
!! ATATGTATAAAAAAAGGATT+TGG + chr2_4:7309181-7309200 None:intergenic 15.0%
!! TTACAGATATGTATAAAAAA+AGG + chr2_4:7309187-7309206 None:intergenic 15.0%
!! TTTAGTCATTTATATATTTG+GGG + chr2_4:7310710-7310729 None:intergenic 15.0%
!!! GTTTTAGTCATTTATATATT+TGG + chr2_4:7310712-7310731 None:intergenic 15.0%
!! TTAACTAATTAAAACTTCTA+CGG + chr2_4:7311366-7311385 None:intergenic 15.0%
!!! TTCTTTATTTTCAAATTGTT+TGG - chr2_4:7311438-7311457 Msa0312300:CDS 15.0%
!! ATGAGTAAAATAAGTTAATA+TGG - chr2_4:7312017-7312036 Msa0312300:intron 15.0%
!!! TTTTTTTTGTTTTCTTCAAC+TGG - chr2_4:7308497-7308516 Msa0312300:CDS 20.0%
!!! TTTTTTTGTTTTCTTCAACT+GGG - chr2_4:7308498-7308517 Msa0312300:CDS 20.0%
!!! AGAAATAATTCTGTTGTTTT+AGG + chr2_4:7308558-7308577 None:intergenic 20.0%
!!! ACAACAGAATTATTTCTTTT+TGG - chr2_4:7308561-7308580 Msa0312300:intron 20.0%
!!! TTTCATGTTTCATTTTAAGA+TGG - chr2_4:7308658-7308677 Msa0312300:CDS 20.0%
!!! GATTCATTTACAAAGTTTTA+TGG - chr2_4:7308955-7308974 Msa0312300:CDS 20.0%
!!! TGTTTTATTTCAAGAGTTTA+TGG - chr2_4:7309217-7309236 Msa0312300:intron 20.0%
!!! ATATGACATGTTTTAACAAT+AGG - chr2_4:7309250-7309269 Msa0312300:intron 20.0%
!! ATTGTTTATCAATTAAACAC+CGG + chr2_4:7309562-7309581 None:intergenic 20.0%
!! AAGTATAGTTAATAAGAAAC+AGG + chr2_4:7310056-7310075 None:intergenic 20.0%
!! AGTATACTGATAAGTATAAA+AGG - chr2_4:7310658-7310677 Msa0312300:CDS 20.0%
!!! CTTGCAATTTTTAAATTTGT+TGG + chr2_4:7311254-7311273 None:intergenic 20.0%
!!! TTTATTTTCAAATTGTTTGG+AGG - chr2_4:7311441-7311460 Msa0312300:CDS 20.0%
!! ATTCCTTAATATCTATAGTT+AGG - chr2_4:7311524-7311543 Msa0312300:intron 20.0%
!!! TTTTATATAATAGAAGTCGA+AGG - chr2_4:7311622-7311641 Msa0312300:intron 20.0%
!! TTTATATAATAGAAGTCGAA+GGG - chr2_4:7311623-7311642 Msa0312300:intron 20.0%
!! AGAGAAACCAAAAAATTATA+TGG + chr2_4:7311870-7311889 None:intergenic 20.0%
!! TTTCTCTTAAAATCAGTTTA+TGG - chr2_4:7311883-7311902 Msa0312300:intron 20.0%
!! TTCTTTATTGCTTATACATA+TGG - chr2_4:7312450-7312469 Msa0312300:intron 20.0%
!!! AGACTTTGTTTTTAAAACAA+TGG - chr2_4:7312521-7312540 Msa0312300:intron 20.0%
!!! GACTTTGTTTTTAAAACAAT+GGG - chr2_4:7312522-7312541 Msa0312300:intron 20.0%
!!! ACTTTGTTTTTAAAACAATG+GGG - chr2_4:7312523-7312542 Msa0312300:intron 20.0%
!! TATTTGTAACACAATTTCTA+TGG + chr2_4:7313481-7313500 None:intergenic 20.0%
!! GAAATAGAAACAAAAAATCT+CGG + chr2_4:7313509-7313528 None:intergenic 20.0%
! AAAGAATGAAGAAGTTGTTA+TGG + chr2_4:7308295-7308314 None:intergenic 25.0%
!!! ATTTTAAGATGGTTTCAACT+TGG - chr2_4:7308669-7308688 Msa0312300:CDS 25.0%
! TAAAACATATGTGTTAGATG+CGG + chr2_4:7309000-7309019 None:intergenic 25.0%
! AAAAAAATTCAGAATTCTGG+AGG - chr2_4:7309019-7309038 Msa0312300:intron 25.0%
! AGGTATACAATGAAATCTTA+TGG - chr2_4:7309333-7309352 Msa0312300:intron 25.0%
!!! TATTGTTTTATGCTGTATGT+TGG - chr2_4:7309371-7309390 Msa0312300:intron 25.0%
! GTGTGTGAAAATTATATCAT+GGG + chr2_4:7309418-7309437 None:intergenic 25.0%
! AGTGTGTGAAAATTATATCA+TGG + chr2_4:7309419-7309438 None:intergenic 25.0%
! TCTACACACAAAAAAAATCT+GGG + chr2_4:7309525-7309544 None:intergenic 25.0%
! TTCTACACACAAAAAAAATC+TGG + chr2_4:7309526-7309545 None:intergenic 25.0%
!!! ATATTGACTTATAGCATGTT+TGG - chr2_4:7309584-7309603 Msa0312300:intron 25.0%
! TTGTTAGTTAATAGACTGTT+TGG + chr2_4:7309724-7309743 None:intergenic 25.0%
! GTAAACTTAATCACAGATAT+AGG + chr2_4:7310138-7310157 None:intergenic 25.0%
! TTGAATAAAACTACTACTTG+AGG - chr2_4:7310206-7310225 Msa0312300:intron 25.0%
!!! ACACTGTTTTGATTTGAATT+TGG - chr2_4:7310808-7310827 Msa0312300:intron 25.0%
! ATCTATAACGAATATTCAAC+AGG - chr2_4:7310847-7310866 Msa0312300:CDS 25.0%
! TGTAATATGATACAATCCAT+TGG - chr2_4:7310902-7310921 Msa0312300:intron 25.0%
! ATGATAGATTATATGATGCA+GGG - chr2_4:7310937-7310956 Msa0312300:intron 25.0%
! GTACCTAACTATAGATATTA+AGG + chr2_4:7311530-7311549 None:intergenic 25.0%
! TCAAATCCTTCTTAATGTTT+CGG + chr2_4:7311723-7311742 None:intergenic 25.0%
! ATTTAATTAGTCGTCGTTAT+TGG - chr2_4:7311743-7311762 Msa0312300:CDS 25.0%
!! TTGTTTTCTGATAGAATCTT+TGG - chr2_4:7311840-7311859 Msa0312300:intron 25.0%
!!! TGGTCTTCCATATAATTTTT+TGG - chr2_4:7311860-7311879 Msa0312300:intron 25.0%
!! TCTTGAAATTTTGCATTTGT+TGG - chr2_4:7311910-7311929 Msa0312300:intron 25.0%
!!! TTAGCTTTGTTTTGCATATT+GGG - chr2_4:7312270-7312289 Msa0312300:intron 25.0%
!!! GATTTTCCTTTGAAAACTAT+AGG + chr2_4:7312373-7312392 None:intergenic 25.0%
! AATTAAATTTCTCAATCTCC+AGG + chr2_4:7312490-7312509 None:intergenic 25.0%
!!! TGTTTTAAAAACAAAGTCTG+TGG + chr2_4:7312520-7312539 None:intergenic 25.0%
! CTTAATTATCTACATATCCT+AGG + chr2_4:7312667-7312686 None:intergenic 25.0%
!! ATTGGTGACTATACTATTAT+TGG - chr2_4:7312892-7312911 Msa0312300:intron 25.0%
!! TTGGTGACTATACTATTATT+GGG - chr2_4:7312893-7312912 Msa0312300:intron 25.0%
! ACAAGAATAGTAAATACTTC+AGG + chr2_4:7312933-7312952 None:intergenic 25.0%
! TCGTGTGAAAAATTATAAAC+TGG + chr2_4:7313020-7313039 None:intergenic 25.0%
! TATACCATTTATCAGTTGTT+TGG + chr2_4:7313103-7313122 None:intergenic 25.0%
!! TTGTAGATTTTCTACTTCAT+TGG - chr2_4:7313139-7313158 Msa0312300:intron 25.0%
!! ATTTTCTACTTCATTGGATT+TGG - chr2_4:7313145-7313164 Msa0312300:intron 25.0%
! ATTAACAAACCACATATAAC+AGG + chr2_4:7313548-7313567 None:intergenic 25.0%
TCTTATGCAAGAGAACAAAA+TGG + chr2_4:7308246-7308265 None:intergenic 30.0%
ATGAAGAAGTTGTTATGGTA+AGG + chr2_4:7308290-7308309 None:intergenic 30.0%
! CAACTGTTGTGTTGTTAAAA+GGG + chr2_4:7308345-7308364 None:intergenic 30.0%
AAATGGTCTATCATTGAACA+TGG + chr2_4:7308847-7308866 None:intergenic 30.0%
GTTCAATGATAGACCATTTA+AGG - chr2_4:7308848-7308867 Msa0312300:intron 30.0%
GAATCTAACAAGTCCTTAAA+TGG + chr2_4:7308864-7308883 None:intergenic 30.0%
ACATTCATGATGCATCATTA+TGG - chr2_4:7308900-7308919 Msa0312300:intron 30.0%
!!! ATGGTGTCTTTTGGTTTATA+TGG - chr2_4:7308919-7308938 Msa0312300:intron 30.0%
ACTTTGTAAATGAATCAGAG+CGG + chr2_4:7308951-7308970 None:intergenic 30.0%
AAAACATATGTGTTAGATGC+GGG + chr2_4:7308999-7309018 None:intergenic 30.0%
! CAGATTACAACTATGGTTTT+GGG - chr2_4:7309092-7309111 Msa0312300:intron 30.0%
ACAATAGGATGTGAAAAAGA+AGG - chr2_4:7309265-7309284 Msa0312300:intron 30.0%
AAACAATATTGTGAACCTAG+AGG + chr2_4:7309359-7309378 None:intergenic 30.0%
TTATATCATGGGCAAAGATA+AGG + chr2_4:7309407-7309426 None:intergenic 30.0%
! TACCATGAAATTTTTAACCC+AGG - chr2_4:7309438-7309457 Msa0312300:intron 30.0%
TTCCTGGGTTAAAAATTTCA+TGG + chr2_4:7309443-7309462 None:intergenic 30.0%
! CTGTAAATACAAGTTTTCCT+GGG + chr2_4:7309458-7309477 None:intergenic 30.0%
! ACTGTAAATACAAGTTTTCC+TGG + chr2_4:7309459-7309478 None:intergenic 30.0%
AGGAAAACTTGTATTTACAG+TGG - chr2_4:7309458-7309477 Msa0312300:intron 30.0%
!!! ATACTAGCTTCTTGTTTTCA+CGG + chr2_4:7309654-7309673 None:intergenic 30.0%
TTAGTTCAAATTAACCAGCT+AGG + chr2_4:7309747-7309766 None:intergenic 30.0%
GTTAAATTGCTGTGATTAGA+AGG - chr2_4:7309889-7309908 Msa0312300:intron 30.0%
AACTATACTTGTCAAAATGC+AGG - chr2_4:7310066-7310085 Msa0312300:intron 30.0%
CACAAACAAAGAACAACTAA+GGG + chr2_4:7310167-7310186 None:intergenic 30.0%
ACACAAACAAAGAACAACTA+AGG + chr2_4:7310168-7310187 None:intergenic 30.0%
! TTGTTATTGAGGAGAAGAAT+TGG - chr2_4:7310399-7310418 Msa0312300:intron 30.0%
! TGATGGATAATTGGGAAAAA+TGG + chr2_4:7310428-7310447 None:intergenic 30.0%
!! CGATATCATGATGGATAATT+GGG + chr2_4:7310436-7310455 None:intergenic 30.0%
CAACATATTGAAGTCTTTGA+AGG + chr2_4:7310478-7310497 None:intergenic 30.0%
!!! GTTGCATTTTTTTCGTTGTT+AGG - chr2_4:7310494-7310513 Msa0312300:intron 30.0%
!!! AACAAGAGGTTGCTTTTAAT+TGG - chr2_4:7310611-7310630 Msa0312300:intron 30.0%
! TCATTTATATATTTGGGGTG+TGG + chr2_4:7310705-7310724 None:intergenic 30.0%
TGATGAACACATTCTCTATT+TGG - chr2_4:7310759-7310778 Msa0312300:intron 30.0%
!!! CTATTTGGTTTTTCTTAGCT+TGG - chr2_4:7310774-7310793 Msa0312300:intron 30.0%
GATGATAGATTATATGATGC+AGG - chr2_4:7310936-7310955 Msa0312300:intron 30.0%
!! TTTAGAAATGGGTTATCGAA+TGG - chr2_4:7311026-7311045 Msa0312300:intron 30.0%
ATCTGATTCAACAGATTCAA+TGG - chr2_4:7311061-7311080 Msa0312300:intron 30.0%
CTGTTACAGGTGTAAAAATA+TGG - chr2_4:7311103-7311122 Msa0312300:intron 30.0%
GATATAATGGTTTATACCAC+AGG + chr2_4:7311176-7311195 None:intergenic 30.0%
AACCATTATATCGTGCATTT+AGG - chr2_4:7311184-7311203 Msa0312300:intron 30.0%
TACCTAAATGCACGATATAA+TGG + chr2_4:7311189-7311208 None:intergenic 30.0%
TGGTAAGGATAAAAATTGCA+AGG + chr2_4:7311404-7311423 None:intergenic 30.0%
AAAGAAAAACCTCTCTCATT+TGG + chr2_4:7311424-7311443 None:intergenic 30.0%
TTATCTAAATCCCAACAACT+GGG + chr2_4:7311692-7311711 None:intergenic 30.0%
! GAAGTATTATTTATCAGCCT+GGG + chr2_4:7311986-7312005 None:intergenic 30.0%
!! AGAAGTATTATTTATCAGCC+TGG + chr2_4:7311987-7312006 None:intergenic 30.0%
AGGCTGATAAATAATACTTC+TGG - chr2_4:7311986-7312005 Msa0312300:intron 30.0%
TATGGATACATGTTACGTTA+CGG - chr2_4:7312035-7312054 Msa0312300:intron 30.0%
TCCAAATTTAATAGCACTGT+CGG + chr2_4:7312201-7312220 None:intergenic 30.0%
! ACAGTGCTATTAAATTTGGA+TGG - chr2_4:7312201-7312220 Msa0312300:intron 30.0%
!!! ATGGTTTTTTCTGTTTTACC+TGG - chr2_4:7312220-7312239 Msa0312300:intron 30.0%
AGCAAAATAGTCAATTTACC+AGG + chr2_4:7312241-7312260 None:intergenic 30.0%
!!! GTTAGCTTTGTTTTGCATAT+TGG - chr2_4:7312269-7312288 Msa0312300:intron 30.0%
TGTAAGCAGAAAAAGAAATG+AGG + chr2_4:7312310-7312329 None:intergenic 30.0%
! TTCCTTTGAAAACTATAGGA+GGG + chr2_4:7312369-7312388 None:intergenic 30.0%
! TTTCCTTTGAAAACTATAGG+AGG + chr2_4:7312370-7312389 None:intergenic 30.0%
ATGTACTTTCGAACCAAATA+GGG + chr2_4:7312570-7312589 None:intergenic 30.0%
AATGTACTTTCGAACCAAAT+AGG + chr2_4:7312571-7312590 None:intergenic 30.0%
TCTTCTTTCACTTCTATTCT+AGG + chr2_4:7312605-7312624 None:intergenic 30.0%
TTTGACATGAATTTGAACCT+AGG - chr2_4:7312647-7312666 Msa0312300:intron 30.0%
TGGTAAAAGTGGTAAAATCT+AGG - chr2_4:7312765-7312784 Msa0312300:CDS 30.0%
CAAAAAATGAGAATAACACG+AGG + chr2_4:7312816-7312835 None:intergenic 30.0%
!!! CTCGTGTTATTCTCATTTTT+TGG - chr2_4:7312814-7312833 Msa0312300:intron 30.0%
! GATGTTTTCTCATTGATACA+GGG - chr2_4:7312846-7312865 Msa0312300:intron 30.0%
! ATGTTTTCTCATTGATACAG+GGG - chr2_4:7312847-7312866 Msa0312300:intron 30.0%
TGGTGACTATACTATTATTG+GGG - chr2_4:7312894-7312913 Msa0312300:intron 30.0%
AATAGTAAATACTTCAGGAC+AGG + chr2_4:7312928-7312947 None:intergenic 30.0%
TTTGCGTTAGAACTATAATG+AGG + chr2_4:7313044-7313063 None:intergenic 30.0%
! CAGAAAACTTTTCATTGCTT+AGG + chr2_4:7313077-7313096 None:intergenic 30.0%
GTAGAAAATCTACAAGCAAA+TGG + chr2_4:7313134-7313153 None:intergenic 30.0%
! TTGAAAAGTACAATCAAACC+TGG + chr2_4:7313210-7313229 None:intergenic 30.0%
ACAAAAGCAAAGAAGTTAAC+AGG + chr2_4:7313302-7313321 None:intergenic 30.0%
ACATTTATATTGCCTTCAGA+AGG + chr2_4:7313428-7313447 None:intergenic 30.0%
AAATGTAGACACTAAGTGAT+TGG - chr2_4:7313584-7313603 Msa0312300:five_prime_UTR 30.0%
! CTATATGTCACCTTTTCTTT+TGG - chr2_4:7313661-7313680 Msa0312300:five_prime_UTR 30.0%
AATGGGAGTTTAGAGACTTT+AGG + chr2_4:7308198-7308217 None:intergenic 35.0%
AAAGGGAAGAAAGGAGATTT+GGG + chr2_4:7308328-7308347 None:intergenic 35.0%
AAAAGGGAAGAAAGGAGATT+TGG + chr2_4:7308329-7308348 None:intergenic 35.0%
! GTGTTGTTAAAAGGGAAGAA+AGG + chr2_4:7308337-7308356 None:intergenic 35.0%
! GCAACTGTTGTGTTGTTAAA+AGG + chr2_4:7308346-7308365 None:intergenic 35.0%
!! TGCTTGTTTCTATCATCTCA+TGG - chr2_4:7308394-7308413 Msa0312300:three_prime_UTR 35.0%
!! AAGAGGTACTTACAGCAAAA+GGG + chr2_4:7308463-7308482 None:intergenic 35.0%
!! AAAGAGGTACTTACAGCAAA+AGG + chr2_4:7308464-7308483 None:intergenic 35.0%
!!! TTTTGGGTTTGCAATTCTTG+TGG - chr2_4:7308585-7308604 Msa0312300:intron 35.0%
TAAGTGTAATCACATGTGTC+TGG - chr2_4:7308797-7308816 Msa0312300:intron 35.0%
AAGTGTAATCACATGTGTCT+GGG - chr2_4:7308798-7308817 Msa0312300:intron 35.0%
GTCTATCATTGAACATGGTT+CGG + chr2_4:7308842-7308861 None:intergenic 35.0%
! TGCATCATTATGGTGTCTTT+TGG - chr2_4:7308910-7308929 Msa0312300:intron 35.0%
CTTTGTAAATGAATCAGAGC+GGG + chr2_4:7308950-7308969 None:intergenic 35.0%
! GCAGATTACAACTATGGTTT+TGG - chr2_4:7309091-7309110 Msa0312300:intron 35.0%
TATACCTCTTGATGCATCAA+CGG - chr2_4:7309126-7309145 Msa0312300:intron 35.0%
TGAATTGAGAAAACGAGAAC+AGG - chr2_4:7309313-7309332 Msa0312300:intron 35.0%
AATGAAATCTTATGGCCTCT+AGG - chr2_4:7309341-7309360 Msa0312300:intron 35.0%
ATGGGCAAAGATAAGGAAAA+AGG + chr2_4:7309400-7309419 None:intergenic 35.0%
TATCAATTAAACACCGGTCT+AGG + chr2_4:7309556-7309575 None:intergenic 35.0%
!!! TTCTTGTTTTCACGGCAAAA+TGG + chr2_4:7309646-7309665 None:intergenic 35.0%
! TTCTAAAAAATGCGCGTCTA+GGG - chr2_4:7309681-7309700 Msa0312300:intron 35.0%
CTATTAACTAACAACCTAGC+TGG - chr2_4:7309730-7309749 Msa0312300:intron 35.0%
TTAGAAGGTAGTTTGATCTC+TGG - chr2_4:7309904-7309923 Msa0312300:intron 35.0%
GTGTTATCCTCTATAGATCT+TGG - chr2_4:7309949-7309968 Msa0312300:intron 35.0%
TAATAAGAAACAGGCAGTCA+GGG + chr2_4:7310047-7310066 None:intergenic 35.0%
TTAATAAGAAACAGGCAGTC+AGG + chr2_4:7310048-7310067 None:intergenic 35.0%
TCAAAATGCAGGAAGTAAGA+CGG - chr2_4:7310077-7310096 Msa0312300:intron 35.0%
ACATAAACTACCTCGTGAAA+TGG + chr2_4:7310113-7310132 None:intergenic 35.0%
TGGATAATTGGGAAAAATGG+TGG + chr2_4:7310425-7310444 None:intergenic 35.0%
!! GCGATATCATGATGGATAAT+TGG + chr2_4:7310437-7310456 None:intergenic 35.0%
TTTCATTCGCGATATCATGA+TGG + chr2_4:7310445-7310464 None:intergenic 35.0%
GCACTCAATAAGTAAACAAG+AGG - chr2_4:7310597-7310616 Msa0312300:intron 35.0%
!! TTGCTTTTAATTGGCGTCAA+TGG - chr2_4:7310620-7310639 Msa0312300:intron 35.0%
!!! CCTTGTTTTGTTGAATCTGT+CGG - chr2_4:7310731-7310750 Msa0312300:CDS 35.0%
ATACAATCCATTGGCAATGA+TGG - chr2_4:7310911-7310930 Msa0312300:intron 35.0%
GAGAAGGTCAGTTTAGAAAT+GGG - chr2_4:7311015-7311034 Msa0312300:intron 35.0%
TTTACACCTGTAACAGACAA+GGG + chr2_4:7311099-7311118 None:intergenic 35.0%
! TTTTACACCTGTAACAGACA+AGG + chr2_4:7311100-7311119 None:intergenic 35.0%
CCATTATCTACTTCATAGCA+GGG - chr2_4:7311133-7311152 Msa0312300:intron 35.0%
CATTATCTACTTCATAGCAG+GGG - chr2_4:7311134-7311153 Msa0312300:intron 35.0%
! GACCAGAATTTTGTCATGTT+TGG - chr2_4:7311313-7311332 Msa0312300:intron 35.0%
CACCAAACATGACAAAATTC+TGG + chr2_4:7311318-7311337 None:intergenic 35.0%
TTATCCTTACCAAATGAGAG+AGG - chr2_4:7311412-7311431 Msa0312300:CDS 35.0%
AAAACCTCTCTCATTTGGTA+AGG + chr2_4:7311419-7311438 None:intergenic 35.0%
GTTAGTTAGATTAGAACACC+TGG - chr2_4:7311565-7311584 Msa0312300:intron 35.0%
GTTATCTAAATCCCAACAAC+TGG + chr2_4:7311693-7311712 None:intergenic 35.0%
TTTGTGCCGAAACATTAAGA+AGG - chr2_4:7311714-7311733 Msa0312300:intron 35.0%
!! ACAAAAAGCCATTTTCCGTT+AGG + chr2_4:7311792-7311811 None:intergenic 35.0%
ATATCGTGACTAGATAGATG+GGG + chr2_4:7311936-7311955 None:intergenic 35.0%
GATATCGTGACTAGATAGAT+GGG + chr2_4:7311937-7311956 None:intergenic 35.0%
CAGAAAAATCAGCATGTCAA+TGG + chr2_4:7312133-7312152 None:intergenic 35.0%
! TTCTGATTTGATCTTGATCG+TGG - chr2_4:7312148-7312167 Msa0312300:intron 35.0%
!!! TGTTGCTTTGTTACTTTTGC+AGG - chr2_4:7312174-7312193 Msa0312300:intron 35.0%
! ACCGACAGTGCTATTAAATT+TGG - chr2_4:7312197-7312216 Msa0312300:intron 35.0%
! TCCTTTGAAAACTATAGGAG+GGG + chr2_4:7312368-7312387 None:intergenic 35.0%
AATGAAGTCAACTTACGTCA+AGG + chr2_4:7312395-7312414 None:intergenic 35.0%
CAACAGTAGCATGTTAAATG+AGG + chr2_4:7312426-7312445 None:intergenic 35.0%
!! ATGGCTTTATATGTATAGCC+TGG - chr2_4:7312469-7312488 Msa0312300:intron 35.0%
ATCATGTAATACTTCAGCTC+AGG + chr2_4:7312708-7312727 None:intergenic 35.0%
! CGATGTTTTCTCATTGATAC+AGG - chr2_4:7312845-7312864 Msa0312300:intron 35.0%
ATAGTCACCAATCACATCTA+TGG + chr2_4:7312884-7312903 None:intergenic 35.0%
! CGAACATTTCCAATTTGCTT+AGG - chr2_4:7312975-7312994 Msa0312300:intron 35.0%
! ACATTTCCAATTTGCTTAGG+CGG - chr2_4:7312978-7312997 Msa0312300:intron 35.0%
ATAAAACCGCCTAAGCAAAT+TGG + chr2_4:7312987-7313006 None:intergenic 35.0%
GCTTCCAAACAACTGATAAA+TGG - chr2_4:7313096-7313115 Msa0312300:intron 35.0%
! AACAGGTTACAGGTACTTTT+TGG + chr2_4:7313285-7313304 None:intergenic 35.0%
CAAAGAAGTTAACAGGTTAC+AGG + chr2_4:7313295-7313314 None:intergenic 35.0%
CAAGTATATATGTACTTCCG+TGG - chr2_4:7313331-7313350 Msa0312300:intron 35.0%
AACATGCTACCTGTTATATG+TGG - chr2_4:7313536-7313555 Msa0312300:five_prime_UTR 35.0%
!! GTTTAGAGACTTTAGGACAC+AGG + chr2_4:7308191-7308210 None:intergenic 40.0%
! AGAAAGGAGATTTGGGACTT+TGG + chr2_4:7308321-7308340 None:intergenic 40.0%
CAGAGGAGAATACAAGAAAG+TGG + chr2_4:7308368-7308387 None:intergenic 40.0%
! TGTTTCTATCATCTCATGGC+CGG - chr2_4:7308398-7308417 Msa0312300:three_prime_UTR 40.0%
!! TTGACTTGTTCTTCGTCGAA+GGG + chr2_4:7308440-7308459 None:intergenic 40.0%
ACTGCTTACTATGTTTCAGC+TGG - chr2_4:7308628-7308647 Msa0312300:intron 40.0%
TTTGAATCCAACTCCATCAG+AGG - chr2_4:7308727-7308746 Msa0312300:intron 40.0%
TTGAATCCAACTCCATCAGA+GGG - chr2_4:7308728-7308747 Msa0312300:intron 40.0%
AGTGTAATCACATGTGTCTG+GGG - chr2_4:7308799-7308818 Msa0312300:intron 40.0%
! TAAATGAATCAGAGCGGGTT+TGG + chr2_4:7308945-7308964 None:intergenic 40.0%
TAGTTGTAATCTGCACGTTC+AGG + chr2_4:7309085-7309104 None:intergenic 40.0%
GAACGTGCAGATTACAACTA+TGG - chr2_4:7309085-7309104 Msa0312300:intron 40.0%
! TTTTCTCAATTCAGCCTCCT+TGG + chr2_4:7309306-7309325 None:intergenic 40.0%
GTAGAAACAACTACCTAGAC+CGG - chr2_4:7309540-7309559 Msa0312300:intron 40.0%
! CTTCTAAAAAATGCGCGTCT+AGG - chr2_4:7309680-7309699 Msa0312300:intron 40.0%
CTAAACTCTAACAACCTAGC+TGG - chr2_4:7309867-7309886 Msa0312300:intron 40.0%
TCACAGCAATTTAACCAGCT+AGG + chr2_4:7309884-7309903 None:intergenic 40.0%
GAAGACACCAAGATCTATAG+AGG + chr2_4:7309959-7309978 None:intergenic 40.0%
AAAGAAGAAGCCATTTCACG+AGG - chr2_4:7310100-7310119 Msa0312300:intron 40.0%
CATGTGTAGAATGAGTCGAT+TGG + chr2_4:7310265-7310284 None:intergenic 40.0%
AACAGAGCGATTACATGTCA+AGG + chr2_4:7310367-7310386 None:intergenic 40.0%
! TGCAGCTGGAATTGTTATTG+AGG - chr2_4:7310388-7310407 Msa0312300:intron 40.0%
! TGAAGTCTTTGAAGGTGAAC+TGG + chr2_4:7310470-7310489 None:intergenic 40.0%
CCGACAGATTCAACAAAACA+AGG + chr2_4:7310734-7310753 None:intergenic 40.0%
!! TGTTTTGTTGAATCTGTCGG+TGG - chr2_4:7310734-7310753 Msa0312300:intron 40.0%
TCATCAACCATCATTGCCAA+TGG + chr2_4:7310921-7310940 None:intergenic 40.0%
CAGCTACAACATTCCATGTA+AGG + chr2_4:7310974-7310993 None:intergenic 40.0%
TTCTCCTTTAATCCAAGCTG+CGG + chr2_4:7311000-7311019 None:intergenic 40.0%
GGAGAAGGTCAGTTTAGAAA+TGG - chr2_4:7311014-7311033 Msa0312300:intron 40.0%
GCCATTATCTACTTCATAGC+AGG - chr2_4:7311132-7311151 Msa0312300:intron 40.0%
CCCTGCTATGAAGTAGATAA+TGG + chr2_4:7311136-7311155 None:intergenic 40.0%
GAACACCTGGTTAAATAGAG+AGG - chr2_4:7311578-7311597 Msa0312300:intron 40.0%
ACCTGGTTAAATAGAGAGGT+TGG - chr2_4:7311582-7311601 Msa0312300:intron 40.0%
TCCAACCTCTCTATTTAACC+AGG + chr2_4:7311586-7311605 None:intergenic 40.0%
GGTTAAATAGAGAGGTTGGA+AGG - chr2_4:7311586-7311605 Msa0312300:intron 40.0%
ATAATAGAAGTCGAAGGGAG+CGG - chr2_4:7311628-7311647 Msa0312300:intron 40.0%
!! AAAAGCCATTTTCCGTTAGG+TGG + chr2_4:7311789-7311808 None:intergenic 40.0%
GGATATCGTGACTAGATAGA+TGG + chr2_4:7311938-7311957 None:intergenic 40.0%
TCAACAAGGTCACTAGCTAA+GGG + chr2_4:7311959-7311978 None:intergenic 40.0%
TTCAACAAGGTCACTAGCTA+AGG + chr2_4:7311960-7311979 None:intergenic 40.0%
TGCACAATCTTGCTACATCA+GGG + chr2_4:7312105-7312124 None:intergenic 40.0%
ATGCACAATCTTGCTACATC+AGG + chr2_4:7312106-7312125 None:intergenic 40.0%
AAAATCAGCATGTCAATGGC+TGG + chr2_4:7312129-7312148 None:intergenic 40.0%
TCCATGTACTCAACCCTATT+TGG - chr2_4:7312554-7312573 Msa0312300:CDS 40.0%
ACCAAATAGGGTTGAGTACA+TGG + chr2_4:7312558-7312577 None:intergenic 40.0%
AGTTAGACTGATGCACATGT+TGG - chr2_4:7312745-7312764 Msa0312300:CDS 40.0%
! GATGCACATGTTGGTAAAAG+TGG - chr2_4:7312754-7312773 Msa0312300:CDS 40.0%
GTATATATGTACTTCCGTGG+CGG - chr2_4:7313334-7313353 Msa0312300:intron 40.0%
TAAGACTGCTGAGATGAAGA+GGG - chr2_4:7313360-7313379 Msa0312300:intron 40.0%
!! GAGACTTTAGGACACAGGAA+GGG + chr2_4:7308186-7308205 None:intergenic 45.0%
!! AGAGACTTTAGGACACAGGA+AGG + chr2_4:7308187-7308206 None:intergenic 45.0%
AGAAACAAGCAAGCAAGCAG+AGG + chr2_4:7308385-7308404 None:intergenic 45.0%
!! TGACTTGTTCTTCGTCGAAG+GGG + chr2_4:7308439-7308458 None:intergenic 45.0%
!! GTTGACTTGTTCTTCGTCGA+AGG + chr2_4:7308441-7308460 None:intergenic 45.0%
GTGTAATCACATGTGTCTGG+GGG - chr2_4:7308800-7308819 Msa0312300:intron 45.0%
! TCATTGAACATGGTTCGGCT+TGG + chr2_4:7308837-7308856 None:intergenic 45.0%
! AGGTCTAGAATTTGTGGCAG+GGG + chr2_4:7309050-7309069 None:intergenic 45.0%
! CAGGTCTAGAATTTGTGGCA+GGG + chr2_4:7309051-7309070 None:intergenic 45.0%
! AGGTGCAGGTCTAGAATTTG+TGG + chr2_4:7309056-7309075 None:intergenic 45.0%
TCTGCACGTTCAGGATTAAG+AGG + chr2_4:7309076-7309095 None:intergenic 45.0%
CATACCGTTGATGCATCAAG+AGG + chr2_4:7309133-7309152 None:intergenic 45.0%
! TAATCGCTCTGTTTTGCAGC+TGG - chr2_4:7310374-7310393 Msa0312300:intron 45.0%
CCACGAGAAGAAAACAAGAC+AGG + chr2_4:7310528-7310547 None:intergenic 45.0%
!!! CCTGTCTTGTTTTCTTCTCG+TGG - chr2_4:7310525-7310544 Msa0312300:intron 45.0%
CAAACCAATAACCATCCCCA+CGG + chr2_4:7310551-7310570 None:intergenic 45.0%
GGTTAGTGTTGTGCCTTACA+TGG - chr2_4:7310958-7310977 Msa0312300:intron 45.0%
GCAGCTTGGATTAAAGGAGA+AGG - chr2_4:7310999-7311018 Msa0312300:intron 45.0%
TGATAGCCAACTCCACCTAA+CGG - chr2_4:7311774-7311793 Msa0312300:intron 45.0%
! CATTTTCCGTTAGGTGGAGT+TGG + chr2_4:7311783-7311802 None:intergenic 45.0%
CAACTCCACCTAACGGAAAA+TGG - chr2_4:7311781-7311800 Msa0312300:intron 45.0%
TTCTGCTTACAGCTTCACCT+TGG - chr2_4:7312319-7312338 Msa0312300:intron 45.0%
TCTGCTTACAGCTTCACCTT+GGG - chr2_4:7312320-7312339 Msa0312300:intron 45.0%
CAGCTAAGATACAGAACCCA+AGG + chr2_4:7312339-7312358 None:intergenic 45.0%
! GCCCCTCCTATAGTTTTCAA+AGG - chr2_4:7312364-7312383 Msa0312300:intron 45.0%
CTGTCAGCCATAGATGTGAT+TGG - chr2_4:7312874-7312893 Msa0312300:intron 45.0%
TTGAAACATTGGTCAGCGTC+TGG - chr2_4:7313179-7313198 Msa0312300:intron 45.0%
TGAAACATTGGTCAGCGTCT+GGG - chr2_4:7313180-7313199 Msa0312300:intron 45.0%
GTAAGACTGCTGAGATGAAG+AGG - chr2_4:7313359-7313378 Msa0312300:intron 45.0%
! TACGATGAAGCACCTTCTGA+AGG - chr2_4:7313413-7313432 Msa0312300:CDS 45.0%
AACTAAGCTGCTCCCTCTGA+TGG + chr2_4:7308743-7308762 None:intergenic 50.0%
CAGAGGGAGCAGCTTAGTTA+TGG - chr2_4:7308744-7308763 Msa0312300:intron 50.0%
!! ACATGGTTCGGCTTGGATCA+CGG + chr2_4:7308830-7308849 None:intergenic 50.0%
! GCAGGTCTAGAATTTGTGGC+AGG + chr2_4:7309052-7309071 None:intergenic 50.0%
! CGTTCAGGATTAAGAGGTGC+AGG + chr2_4:7309070-7309089 None:intergenic 50.0%
GGAAAGAGAACTCCAAGCCA+AGG - chr2_4:7309286-7309305 Msa0312300:intron 50.0%
AAGAGAACTCCAAGCCAAGG+AGG - chr2_4:7309289-7309308 Msa0312300:intron 50.0%
TCAATTCAGCCTCCTTGGCT+TGG + chr2_4:7309301-7309320 None:intergenic 50.0%
AAAATGCGCGTCTAGGGACT+TGG - chr2_4:7309687-7309706 Msa0312300:intron 50.0%
! TTGTTTTCTTCTCGTGGCCG+TGG - chr2_4:7310531-7310550 Msa0312300:intron 50.0%
! TGTTTTCTTCTCGTGGCCGT+GGG - chr2_4:7310532-7310551 Msa0312300:intron 50.0%
GTCACCGCAGCTTGGATTAA+AGG - chr2_4:7310993-7311012 Msa0312300:intron 50.0%
AACTCGCCCTTGTCTGTTAC+AGG - chr2_4:7311090-7311109 Msa0312300:intron 50.0%
TACTTCATAGCAGGGGTTCC+TGG - chr2_4:7311141-7311160 Msa0312300:intron 50.0%
TTCCTGGAGCATATGTCCTG+TGG - chr2_4:7311157-7311176 Msa0312300:intron 50.0%
TACCACAGGACATATGCTCC+AGG + chr2_4:7311162-7311181 None:intergenic 50.0%
TGAGCAGTGACCCAGTTGTT+GGG - chr2_4:7311679-7311698 Msa0312300:intron 50.0%
GTGACCTTGTTGAAATGCCC+AGG - chr2_4:7311966-7311985 Msa0312300:intron 50.0%
TCAGCCTGGGCATTTCAACA+AGG + chr2_4:7311973-7311992 None:intergenic 50.0%
CATGTTACGTTACGGTCTCG+CGG - chr2_4:7312043-7312062 Msa0312300:intron 50.0%
ATGTTACGTTACGGTCTCGC+GGG - chr2_4:7312044-7312063 Msa0312300:intron 50.0%
TACATCAGGGATCAAGCCCA+GGG + chr2_4:7312092-7312111 None:intergenic 50.0%
TATATGTACTTCCGTGGCGG+TGG - chr2_4:7313337-7313356 Msa0312300:intron 50.0%
ATGAAGAGGGAAGCTGCACT+AGG - chr2_4:7313373-7313392 Msa0312300:intron 50.0%
GAAGCTGCACTAGGAGCAAT+GGG - chr2_4:7313382-7313401 Msa0312300:intron 50.0%
AAGCTGCACTAGGAGCAATG+GGG - chr2_4:7313383-7313402 Msa0312300:intron 50.0%
GGGGTTACTGTCGTAACGAC+CGG + chr2_4:7308420-7308439 None:intergenic 55.0%
! GTTTTCTTCTCGTGGCCGTG+GGG - chr2_4:7310533-7310552 Msa0312300:intron 55.0%
AGTGCTACCTCGCTCTGTGT+GGG + chr2_4:7310582-7310601 None:intergenic 55.0%
TTGTAGCTGTCACCGCAGCT+TGG - chr2_4:7310985-7311004 Msa0312300:intron 55.0%
CTGAGCAGTGACCCAGTTGT+TGG - chr2_4:7311678-7311697 Msa0312300:intron 55.0%
CTACATCAGGGATCAAGCCC+AGG + chr2_4:7312093-7312112 None:intergenic 55.0%
GGAAGCTGCACTAGGAGCAA+TGG - chr2_4:7313381-7313400 Msa0312300:intron 55.0%
AGCTGCACTAGGAGCAATGG+GGG - chr2_4:7313384-7313403 Msa0312300:intron 55.0%
GCTGCTCCCTCTGATGGAGT+TGG + chr2_4:7308737-7308756 None:intergenic 60.0%
TGACGCAGACGCGCATCTAG+TGG - chr2_4:7309620-7309639 Msa0312300:intron 60.0%
GTGGCCGTGGGGATGGTTAT+TGG - chr2_4:7310544-7310563 Msa0312300:intron 60.0%
TACCTCGCTCTGTGTGGGTG+CGG + chr2_4:7310577-7310596 None:intergenic 60.0%
GAGTGCTACCTCGCTCTGTG+TGG + chr2_4:7310583-7310602 None:intergenic 60.0%
TCAGGGATCAAGCCCAGGGA+GGG + chr2_4:7312088-7312107 None:intergenic 60.0%
ATCAGGGATCAAGCCCAGGG+AGG + chr2_4:7312089-7312108 None:intergenic 60.0%
GGTCAGCGTCTGGGTTATCC+AGG - chr2_4:7313189-7313208 Msa0312300:intron 60.0%
CAGCAGTCTTACCACCGCCA+CGG + chr2_4:7313351-7313370 None:intergenic 60.0%
TCTTCTCGTGGCCGTGGGGA+TGG - chr2_4:7310537-7310556 Msa0312300:intron 65.0%
ACCTCGCTCTGTGTGGGTGC+GGG + chr2_4:7310576-7310595 None:intergenic 65.0%
AGGGAGGGGAACACCAGAGG+GGG + chr2_4:7312073-7312092 None:intergenic 65.0%
CAGGGAGGGGAACACCAGAG+GGG + chr2_4:7312074-7312093 None:intergenic 65.0%
CCAGGGAGGGGAACACCAGA+GGG + chr2_4:7312075-7312094 None:intergenic 65.0%
CCTCTGGTGTTCCCCTCCCT+GGG - chr2_4:7312073-7312092 Msa0312300:intron 65.0%
CAGGGATCAAGCCCAGGGAG+GGG + chr2_4:7312087-7312106 None:intergenic 65.0%
CCCTCTGGTGTTCCCCTCCC+TGG - chr2_4:7312072-7312091 Msa0312300:intron 70.0%
CCCAGGGAGGGGAACACCAG+AGG + chr2_4:7312076-7312095 None:intergenic 70.0%
GCCCGCACCCACACAGAGCG+AGG - chr2_4:7310572-7310591 Msa0312300:intron 75.0%
GTCTCGCGGGTCACCCCCTC+TGG - chr2_4:7312057-7312076 Msa0312300:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7308173 7313690 7308173 ID=Msa0312300;Name=Msa0312300
chr2_4 mRNA 7308173 7313690 7308173 ID=Msa0312300-mRNA-1;Parent=Msa0312300;Name=Msa0312300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=240|1|1|1|1|1|12|270|289
chr2_4 exon 7308173 7308532 7308173 ID=Msa0312300-mRNA-1:exon:2824;Parent=Msa0312300-mRNA-1
chr2_4 exon 7308653 7308718 7308653 ID=Msa0312300-mRNA-1:exon:2823;Parent=Msa0312300-mRNA-1
chr2_4 exon 7308948 7308996 7308948 ID=Msa0312300-mRNA-1:exon:2822;Parent=Msa0312300-mRNA-1
chr2_4 exon 7309465 7309532 7309465 ID=Msa0312300-mRNA-1:exon:2821;Parent=Msa0312300-mRNA-1
chr2_4 exon 7309622 7309667 7309622 ID=Msa0312300-mRNA-1:exon:2820;Parent=Msa0312300-mRNA-1
chr2_4 exon 7310658 7310751 7310658 ID=Msa0312300-mRNA-1:exon:2819;Parent=Msa0312300-mRNA-1
chr2_4 exon 7310843 7310905 7310843 ID=Msa0312300-mRNA-1:exon:2818;Parent=Msa0312300-mRNA-1
chr2_4 exon 7311348 7311470 7311348 ID=Msa0312300-mRNA-1:exon:2817;Parent=Msa0312300-mRNA-1
chr2_4 exon 7311742 7311775 7311742 ID=Msa0312300-mRNA-1:exon:2816;Parent=Msa0312300-mRNA-1
chr2_4 exon 7312529 7312591 7312529 ID=Msa0312300-mRNA-1:exon:2815;Parent=Msa0312300-mRNA-1
chr2_4 exon 7312716 7312832 7312716 ID=Msa0312300-mRNA-1:exon:2814;Parent=Msa0312300-mRNA-1
chr2_4 exon 7313394 7313690 7313394 ID=Msa0312300-mRNA-1:exon:2813;Parent=Msa0312300-mRNA-1
chr2_4 five_prime_UTR 7313451 7313690 7313451 ID=Msa0312300-mRNA-1:five_prime_utr;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7313394 7313450 7313394 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7312716 7312832 7312716 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7312529 7312591 7312529 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7311742 7311775 7311742 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7311348 7311470 7311348 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7310843 7310905 7310843 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7310658 7310751 7310658 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7309622 7309667 7309622 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7309465 7309532 7309465 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7308948 7308996 7308948 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7308653 7308718 7308653 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 CDS 7308443 7308532 7308443 ID=Msa0312300-mRNA-1:cds;Parent=Msa0312300-mRNA-1
chr2_4 three_prime_UTR 7308173 7308442 7308173 ID=Msa0312300-mRNA-1:three_prime_utr;Parent=Msa0312300-mRNA-1
Gene Sequence

>Msa0312300

ATGGCCGGTCGTTACGACAGTAACCCCTTCGACGAAGAACAAGTCAACCCTTTTGCTAATTCTGGAGGTGTTGCCCCTGCCACAAATTCTAGACCTGCACCTCTTAATCCTGAACGTGCAGATTACAACTATGGTTTTGGGCAGACAGTTGATATACCTCTTGATGCATCAACGGATGTGAAAAAGAAGGAAAGAGAACTCCAAGCCAAGGAGGCTGAATTGAGAAAACGAGAACAGGAAGTAAGACGGAAAGAAGAAGCCATTTCACGAGCTGGAATTGTTATTGAGGAGAAGAATTGGCCACCATTTTTCCCAATTATCCATCATGATATCGCGAATGAAATTCCAGTTCACCTTCAAAGACTTCAATATGTTGCATTTTTTTCGTTGTTAGGGTTAGTGTTGTGCCTTACATGGAATGTTGTAGCTGTCACCGCAGCTTGGATTAAAGGAGAAGGTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTTCCTGGAGCATATGTCCTGTGGTATAAACCATTATATCGTGCATTTAGGACCGACAGTGCTATTAAATTTGGATGGTTTTTTCTGTTTTACCTGCTTCACCTTGGGTTCTGTATCTTAGCTGCTGTTGCCCCTCCTATAGTTTTCAAAGGAAAATCCTTGACGGGCATTCTGTCAGCCATAGATGTGATTGGTGACTATACTATTATTGGGATTTTCTACTTCATTGGATTTGGATTGTTCTGTCTTGAAACATTGGTCAGCGTCTGGGTTATCCAGCAAGTATATATGTACTTCCGTGGCGGTGGTAAGACTGCTGAGATGAAGAGGGAAGCTGCACTAGGAGCAATGGGGGCTGCTCTACGATGA

Protein sequence

>Msa0312300

MAGRYDSNPFDEEQVNPFANSGGVAPATNSRPAPLNPERADYNYGFGQTVDIPLDASTDVKKKERELQAKEAELRKREQEVRRKEEAISRAGIVIEEKNWPPFFPIIHHDIANEIPVHLQRLQYVAFFSLLGLVLCLTWNVVAVTAAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYKPLYRAFRTDSAIKFGWFFLFYLLHLGFCILAAVAPPIVFKGKSLTGILSAIDVIGDYTIIGIFYFIGFGLFCLETLVSVWVIQQVYMYFRGGGKTAEMKREAALGAMGAALR*