AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427520 MtrunA17_Chr3g0130411 96.804 438 14 0 1 438 1 438 0.0 889
Msa0427520 MtrunA17_Chr3g0116661 61.170 376 127 3 77 437 64 435 1.32e-166 475
Msa0427520 MtrunA17_Chr3g0123481 60.250 400 135 5 62 437 71 470 1.42e-166 476
Msa0427520 MtrunA17_Chr6g0458051 58.438 397 127 3 75 437 94 486 2.72e-166 476
Msa0427520 MtrunA17_Chr7g0226791 63.260 362 124 4 85 437 84 445 3.23e-165 472
Msa0427520 MtrunA17_Chr8g0381321 58.869 389 144 3 63 437 89 475 1.10e-163 469
Msa0427520 MtrunA17_Chr2g0309791 60.335 358 133 2 80 437 67 415 1.71e-156 449
Msa0427520 MtrunA17_Chr2g0309781 60.167 359 128 3 80 438 59 402 9.64e-155 444
Msa0427520 MtrunA17_Chr8g0356381 59.467 375 138 4 67 438 43 406 4.91e-151 434
Msa0427520 MtrunA17_Chr2g0309821 60.423 331 119 2 80 410 53 371 6.76e-139 402
Msa0427520 MtrunA17_Chr6g0488261 65.480 281 93 2 83 363 4 280 2.20e-131 381
Msa0427520 MtrunA17_Chr6g0488251 57.778 315 118 3 124 438 7 306 2.07e-128 373
Msa0427520 MtrunA17_Chr7g0250181 59.659 176 49 3 137 293 8 180 7.35e-68 214
Msa0427520 MtrunA17_Chr7g0250151 59.664 119 48 0 122 240 4 122 9.59e-44 149
Msa0427520 MtrunA17_Chr8g0385701 31.818 330 167 16 39 342 279 576 2.66e-21 96.7
Msa0427520 MtrunA17_Chr1g0170101 30.034 293 152 12 87 357 283 544 1.85e-19 90.9
Msa0427520 MtrunA17_Chr7g0273481 30.258 271 136 11 87 335 323 562 4.58e-18 86.7
Msa0427520 MtrunA17_Chr7g0273401 33.333 183 92 6 110 279 1 166 2.78e-17 79.7
Msa0427520 MtrunA17_Chr7g0250161 52.941 68 30 1 240 305 17 84 2.11e-15 73.2
Msa0427520 MtrunA17_Chr8g0356391 63.636 44 16 0 394 437 511 554 5.93e-15 77.0
Msa0427520 MtrunA17_Chr8g0356421 40.698 86 48 1 352 437 427 509 1.78e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427520 AT5G63970.2 70.541 370 103 3 72 438 1 367 0.0 549
Msa0427520 AT5G63970.1 70.541 370 103 3 72 438 1 367 0.0 549
Msa0427520 AT3G01650.2 61.111 378 135 3 68 437 116 489 5.72e-167 478
Msa0427520 AT3G01650.1 61.111 378 135 3 68 437 116 489 5.72e-167 478
Msa0427520 AT5G14420.3 58.701 385 136 2 73 437 87 468 9.64e-163 467
Msa0427520 AT5G14420.2 58.701 385 136 2 73 437 87 468 9.64e-163 467
Msa0427520 AT5G14420.4 58.701 385 136 2 73 437 87 468 9.64e-163 467
Msa0427520 AT5G14420.1 58.701 385 136 2 73 437 87 468 9.64e-163 467
Msa0427520 AT1G67800.4 55.419 406 162 4 46 437 33 433 3.04e-155 446
Msa0427520 AT1G67800.1 55.419 406 162 4 46 437 33 433 3.04e-155 446
Msa0427520 AT1G67800.3 55.419 406 162 4 46 437 33 433 3.04e-155 446
Msa0427520 AT1G67800.6 55.419 406 162 4 46 437 33 433 3.04e-155 446
Msa0427520 AT1G67800.2 55.419 406 162 4 46 437 53 453 5.80e-155 447
Msa0427520 AT1G79380.1 57.216 388 153 3 54 438 24 401 8.86e-155 444
Msa0427520 AT1G67800.5 61.006 318 116 2 46 360 53 365 5.65e-134 391
Msa0427520 AT1G24545.1 44.954 109 22 1 123 231 46 116 9.09e-23 95.5
Msa0427520 AT5G61910.4 30.182 275 132 13 108 359 1109 1346 8.48e-19 90.1
Msa0427520 AT5G61900.3 30.545 275 131 13 108 359 341 578 2.80e-18 87.8
Msa0427520 AT5G61900.1 30.545 275 131 13 108 359 341 578 2.80e-18 87.8
Msa0427520 AT5G07300.1 32.530 249 122 12 108 335 344 567 6.56e-18 86.7
Msa0427520 AT1G08860.1 30.000 250 127 10 108 335 344 567 3.98e-17 84.3

Find 115 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTCTGTTTCCTTCT+TGG 0.060815 3_2:-78196768 None:intergenic
TTATCCTCTCTCAATTATTT+TGG 0.184417 3_2:+78196154 Msa0427520:CDS
GCGCGTATTTGACAACTTTC+AGG 0.205094 3_2:+78196235 Msa0427520:CDS
CATCAACCTTCTTCTTATAC+TGG 0.227724 3_2:+78194170 Msa0427520:CDS
AATCCGAAGGACATGGCTTT+TGG 0.260692 3_2:+78197190 Msa0427520:CDS
TTCTTCTTATACTGGGAGTT+TGG 0.282403 3_2:+78194178 Msa0427520:CDS
GATAATCTGATACCATGTTT+TGG 0.290225 3_2:+78194942 Msa0427520:CDS
ATGGAGATTGCTTGCTCATA+TGG 0.297924 3_2:-78194888 None:intergenic
CACTTTGACGATAACATTAC+TGG 0.306302 3_2:+78196212 Msa0427520:CDS
ACCTGTCCACTCATTGCTTT+TGG 0.308835 3_2:-78194727 None:intergenic
AGACAGAGTCCGGCCAATTA+TGG 0.312266 3_2:-78194907 None:intergenic
ATTTGCGCTTGCTGCCCTTA+TGG 0.316033 3_2:+78196784 Msa0427520:CDS
TGCTTTGAGAGAAGCTGGTT+TGG 0.319024 3_2:+78194671 Msa0427520:CDS
ACTGAACTCCCATCATAATT+AGG 0.320439 3_2:-78194134 None:intergenic
GAGCAAGCAATCTCCATAAT+TGG 0.320653 3_2:+78194894 Msa0427520:CDS
TCAATTGCTGCATCAATTAC+AGG 0.330436 3_2:-78195803 None:intergenic
TCTTCTTATACCGGAAGTTC+GGG 0.334270 3_2:+78194224 Msa0427520:CDS
CTCTTCTTATACCGGAAGTT+CGG 0.338394 3_2:+78194223 Msa0427520:CDS
AAGCAGGCTTAGTAGCAATA+TGG 0.340330 3_2:+78194058 Msa0427520:exon
AGCCGACAATTTCAGCTCAT+TGG 0.359139 3_2:+78194331 Msa0427520:CDS
GTTAGTATTCCCCGAACTTC+CGG 0.363457 3_2:-78194234 None:intergenic
CGGAAGAGCCTTCATCATAT+TGG 0.365540 3_2:+78194852 Msa0427520:CDS
CCTTGTTGATTTGATTTGCT+TGG 0.366947 3_2:-78193298 None:intergenic
TTAGTTGAATTGTAAAGAAA+TGG 0.367130 3_2:-78197775 None:intergenic
CTTCGGATTTGTTAGACAAA+TGG 0.368918 3_2:-78197176 None:intergenic
TTCGGATTTGTTAGACAAAT+GGG 0.372915 3_2:-78197175 None:intergenic
GAATCTTCAAATTTGATACT+TGG 0.376948 3_2:+78194693 Msa0427520:CDS
TCGTGATCTATTATTTCCTT+AGG 0.377030 3_2:-78196975 None:intergenic
ATTGCTTGCTCATATGGATT+AGG 0.378072 3_2:-78194882 None:intergenic
AATGTACCTTGCAGCAATTA+TGG 0.383001 3_2:-78196055 None:intergenic
ACGACTATTTATACATCAAT+GGG 0.389954 3_2:-78197742 None:intergenic
CCATGACAAACTCTATTATC+AGG 0.398725 3_2:-78195093 None:intergenic
GTTCATTGAGTAAAGTATAT+AGG 0.399143 3_2:+78197848 Msa0427520:three_prime_UTR
TACGACTATTTATACATCAA+TGG 0.406535 3_2:-78197743 None:intergenic
GTTTCTGCTTTGAGAGAAGC+TGG 0.409122 3_2:+78194666 Msa0427520:CDS
TGATTCAGAGACAGAGACTT+TGG 0.418989 3_2:-78193190 None:intergenic
CAATTTCAGCTCATTGGATC+AGG 0.420851 3_2:+78194337 Msa0427520:CDS
GTAATGGTTGCTTGTTCTTG+TGG 0.423780 3_2:-78196030 None:intergenic
TCTATTATTTCCTTAGGTGG+TGG 0.431746 3_2:-78196969 None:intergenic
AGCTTTCCATGCGGCGTACC+AGG 0.440711 3_2:-78196003 None:intergenic
TGTCATTATTGCTGATGGAC+AGG 0.443974 3_2:+78195862 Msa0427520:CDS
TCTGCACTGGCTGGAGCTGT+TGG 0.447629 3_2:-78197047 None:intergenic
AGCAGGCTTAGTAGCAATAT+GGG 0.454705 3_2:+78194059 Msa0427520:exon
CTATTATTTCCTTAGGTGGT+GGG 0.465035 3_2:-78196968 None:intergenic
TGTGCTGCCCGGTACTGAAA+TGG 0.465356 3_2:-78196812 None:intergenic
GTTCTTGTCATTATTGCTGA+TGG 0.466502 3_2:+78195857 Msa0427520:CDS
CCCCAGGTTACTAGAAATCC+TGG 0.468853 3_2:+78195985 Msa0427520:intron
CAACACCCTCCTAATTATGA+TGG 0.471709 3_2:+78194125 Msa0427520:CDS
TATCTTTATGCCCTATGTGC+AGG 0.472490 3_2:+78197642 Msa0427520:CDS
TAATTTGCTGCCTGCACATA+GGG 0.474321 3_2:-78197652 None:intergenic
TGGAGATTCCATTTCAGTAC+CGG 0.474482 3_2:+78196804 Msa0427520:CDS
CATCCAAAAGCCATGTCCTT+CGG 0.479435 3_2:-78197193 None:intergenic
TGCTTCATATTACTGAAAGC+AGG 0.480309 3_2:+78194042 Msa0427520:intron
ATCTTCACATGCTACAAGTT+CGG 0.483413 3_2:+78194268 Msa0427520:CDS
ATAAGAAGAGGGTTGATCAT+AGG 0.486114 3_2:-78194210 None:intergenic
ATCCAATGAGCTGAAATTGT+CGG 0.486210 3_2:-78194333 None:intergenic
ATTTCCTTAGGTGGTGGGAG+AGG 0.495075 3_2:-78196963 None:intergenic
CATCAAAAGTAGACAGAGTC+CGG 0.497235 3_2:-78194917 None:intergenic
TGATCTATTATTTCCTTAGG+TGG 0.501463 3_2:-78196972 None:intergenic
TGCAGCAATTATGGAAGTAA+TGG 0.506063 3_2:-78196046 None:intergenic
CATACTGGTTCTGCACTGGC+TGG 0.522210 3_2:-78197056 None:intergenic
GATCAACCCTCTTCTTATAC+CGG 0.529411 3_2:+78194215 Msa0427520:CDS
ATCAACCTTCTTCTTATACT+GGG 0.532895 3_2:+78194171 Msa0427520:CDS
AAGACCTCTCCCACCACCTA+AGG 0.533866 3_2:+78196959 Msa0427520:CDS
CAATTGCTGCATCAATTACA+GGG 0.538242 3_2:-78195802 None:intergenic
ACCAAAAGCAATGAGTGGAC+AGG 0.538547 3_2:+78194726 Msa0427520:CDS
CTGAAATGGAATCTCCATAA+GGG 0.542289 3_2:-78196798 None:intergenic
AGAAATCCTGGTACGCCGCA+TGG 0.545259 3_2:+78195997 Msa0427520:CDS
ATTACAGGGGCAAATGAAGT+TGG 0.548560 3_2:-78195788 None:intergenic
ACTGAAATGGAATCTCCATA+AGG 0.550689 3_2:-78196799 None:intergenic
AAACTCCCAGTATAAGAAGA+AGG 0.556963 3_2:-78194176 None:intergenic
GTAATTTGCTGCCTGCACAT+AGG 0.558684 3_2:-78197653 None:intergenic
CATCATAATTAGGAGGGTGT+TGG 0.562931 3_2:-78194124 None:intergenic
TAGGTAAGTATTCGTTCCAT+CGG 0.563326 3_2:+78194832 Msa0427520:intron
TAGCATGTGAAGATGATTGA+TGG 0.566183 3_2:-78194259 None:intergenic
GAACTCCCATCATAATTAGG+AGG 0.569731 3_2:-78194131 None:intergenic
CCTGATAATAGAGTTTGTCA+TGG 0.570822 3_2:+78195093 Msa0427520:CDS
GAGCCCTTCCAATATGATGA+AGG 0.570882 3_2:-78194860 None:intergenic
GGAGATTCCATTTCAGTACC+GGG 0.571735 3_2:+78196805 Msa0427520:CDS
AGAGCCTTCATCATATTGGA+AGG 0.572099 3_2:+78194856 Msa0427520:CDS
AAGTGCTTCATCTCGTCCCA+TGG 0.572627 3_2:-78196194 None:intergenic
AAATTGTCGGCTATATATGC+TGG 0.574282 3_2:-78194320 None:intergenic
AAGCAATCTCCATAATTGGC+CGG 0.575523 3_2:+78194898 Msa0427520:CDS
GAAACATACTGGTTCTGCAC+TGG 0.575744 3_2:-78197060 None:intergenic
TCTAACAAATCCGAAGGACA+TGG 0.577510 3_2:+78197183 Msa0427520:CDS
TATGATGAAGGCTCTTCCGA+TGG 0.578630 3_2:-78194848 None:intergenic
AAACTTGACAGTTTCAAATG+TGG 0.582650 3_2:-78195153 None:intergenic
GAATCGAAATTTGTTATGCG+TGG 0.586429 3_2:-78197017 None:intergenic
CGAACTTCCGGTATAAGAAG+AGG 0.587264 3_2:-78194222 None:intergenic
TTGGAGTTGGAGATGGACCA+TGG 0.589444 3_2:+78196177 Msa0427520:CDS
ATTTCACCAAAAGCAATGAG+TGG 0.597202 3_2:+78194721 Msa0427520:CDS
AACACCCTCCTAATTATGAT+GGG 0.599452 3_2:+78194126 Msa0427520:CDS
GAACTTCCGGTATAAGAAGA+GGG 0.604425 3_2:-78194221 None:intergenic
AACTCCCATCATAATTAGGA+GGG 0.620871 3_2:-78194130 None:intergenic
ACTTTGACGATAACATTACT+GGG 0.621667 3_2:+78196213 Msa0427520:CDS
TGATGCAGCAATTGACATTG+TGG 0.622992 3_2:+78195811 Msa0427520:CDS
TCGGATTTGTTAGACAAATG+GGG 0.624504 3_2:-78197174 None:intergenic
GACATTGTGGAACGAAACAA+CGG 0.625993 3_2:+78195824 Msa0427520:CDS
CCATCACCAAACCCAAAACA+TGG 0.626028 3_2:-78194954 None:intergenic
AAAGATCATGTCTGAGAACA+CGG 0.629668 3_2:+78196739 Msa0427520:CDS
TGGAGTTGGAGATGGACCAT+GGG 0.631244 3_2:+78196178 Msa0427520:CDS
CTGGTTGCTTGTTATGACGA+TGG 0.637709 3_2:-78194301 None:intergenic
TTACTTCCATAATTGCTGCA+AGG 0.643987 3_2:+78196049 Msa0427520:CDS
CCAACCAAAATAATTGAGAG+AGG 0.646003 3_2:-78196158 None:intergenic
CCAAGCAAATCAAATCAACA+AGG 0.646842 3_2:+78193298 Msa0427520:five_prime_UTR
GAGCCTTCATCATATTGGAA+GGG 0.649815 3_2:+78194857 Msa0427520:CDS
ATGTAGACTTGCAAGGAGTG+TGG 0.650354 3_2:+78197611 Msa0427520:intron
GACTATTTATACATCAATGG+GGG 0.651903 3_2:-78197740 None:intergenic
GAACACGGAAGCATCCAAGA+AGG 0.652615 3_2:+78196754 Msa0427520:CDS
CATTTGTCTAACAAATCCGA+AGG 0.659505 3_2:+78197177 Msa0427520:CDS
CGACTATTTATACATCAATG+GGG 0.674760 3_2:-78197741 None:intergenic
CTTCTTATACCGGAAGTTCG+GGG 0.677113 3_2:+78194225 Msa0427520:CDS
CATGTGAAGATGATTGATGG+TGG 0.687554 3_2:-78194256 None:intergenic
TGTGGACTAAGCTTTCCATG+CGG 0.719964 3_2:-78196012 None:intergenic
AATTGCTGCATCAATTACAG+GGG 0.724712 3_2:-78195801 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGAAATAATTCTAT+TGG + chr3_2:78193345-78193364 Msa0427520:intron 10.0%
!! TAATCCTAATAATAAATATT+AGG + chr3_2:78195455-78195474 Msa0427520:intron 10.0%
!! AAATCCTAATATTTATTATT+AGG - chr3_2:78195462-78195481 None:intergenic 10.0%
!!! TTAAAATTTCATTCTTTTTA+CGG - chr3_2:78197360-78197379 None:intergenic 10.0%
!! TATTTCAAAAAATAAATAGC+TGG - chr3_2:78193338-78193357 None:intergenic 15.0%
!!! TACAATAAGTTCATTTTAAA+AGG - chr3_2:78194757-78194776 None:intergenic 15.0%
!!! CTTTTTTATTTCTTTCAAAT+AGG + chr3_2:78195215-78195234 Msa0427520:intron 15.0%
!! GCATTATAATTTATTGTATA+CGG + chr3_2:78195267-78195286 Msa0427520:intron 15.0%
!!! AAGATTAATTTTCTAAGATA+CGG - chr3_2:78196630-78196649 None:intergenic 15.0%
!! AAACTACAGAAATTATAAAA+TGG - chr3_2:78196708-78196727 None:intergenic 15.0%
!!! TAATTCTATTGGTATGATTT+TGG + chr3_2:78193356-78193375 Msa0427520:intron 20.0%
!! TATGAATTATGCACATAATT+TGG + chr3_2:78193439-78193458 Msa0427520:intron 20.0%
!!! AAATATTGTTTTAGTACTTC+TGG - chr3_2:78193804-78193823 None:intergenic 20.0%
!! GTATACTTTATCAATGTAAA+TGG + chr3_2:78193895-78193914 Msa0427520:intron 20.0%
!! ACTTATTGTATATGCATATA+TGG + chr3_2:78194767-78194786 Msa0427520:intron 20.0%
!! AAATATTAGGATTTGATTCT+TGG + chr3_2:78195468-78195487 Msa0427520:intron 20.0%
!!! TTCTAGAAAAAACAATAGAA+AGG - chr3_2:78195952-78195971 None:intergenic 20.0%
!!! TTTTTTTTTGCTGTTGTTTA+TGG + chr3_2:78196092-78196111 Msa0427520:intron 20.0%
!!! GTTGTGGATTAATAATATAA+TGG + chr3_2:78196857-78196876 Msa0427520:intron 20.0%
!! TTAACATATTCTTGTATTGA+AGG + chr3_2:78197147-78197166 Msa0427520:intron 20.0%
!!! TAAATAGCTTTTCCAAAAAA+TGG - chr3_2:78197318-78197337 None:intergenic 20.0%
!! TTAGTTGAATTGTAAAGAAA+TGG - chr3_2:78197778-78197797 None:intergenic 20.0%
!! AAAGTATATAGGAAAAATGA+AGG + chr3_2:78197859-78197878 Msa0427520:three_prime_UTR 20.0%
!!! GAGGTTGTTCTTTTTTTTTT+AGG - chr3_2:78193264-78193283 None:intergenic 25.0%
!!! AGAACAAACTTGTTTCTAAT+AGG + chr3_2:78193481-78193500 Msa0427520:intron 25.0%
! AATAATTGTCACATAGAAGA+TGG + chr3_2:78193754-78193773 Msa0427520:intron 25.0%
!!! TGGAAGTGTATTTTCAAAAT+AGG - chr3_2:78193859-78193878 None:intergenic 25.0%
! ATGTGAAGGCTAATTAATAT+TGG - chr3_2:78194420-78194439 None:intergenic 25.0%
! GAATCTTCAAATTTGATACT+TGG + chr3_2:78194693-78194712 Msa0427520:CDS 25.0%
!! ATAATCTGATACCATGTTTT+GGG + chr3_2:78194943-78194962 Msa0427520:CDS 25.0%
! ATGCATTGAAATCAACAAAA+GGG - chr3_2:78195026-78195045 None:intergenic 25.0%
! AATGCATTGAAATCAACAAA+AGG - chr3_2:78195027-78195046 None:intergenic 25.0%
! AACAAAAAGGTTAACTTAGA+AGG - chr3_2:78195585-78195604 None:intergenic 25.0%
!! TCTAAGTTAACCTTTTTGTT+TGG + chr3_2:78195585-78195604 Msa0427520:intron 25.0%
!! TATGGTATTTGTCTTTTATG+TGG + chr3_2:78196110-78196129 Msa0427520:intron 25.0%
!! TTATCCTCTCTCAATTATTT+TGG + chr3_2:78196154-78196173 Msa0427520:CDS 25.0%
! ATTTGTCGTATAAATGACAA+AGG + chr3_2:78196337-78196356 Msa0427520:intron 25.0%
! TTATTAATCCACAACTTACT+TGG - chr3_2:78196852-78196871 None:intergenic 25.0%
!!! CTTTTATGTTGATAATGAAC+TGG - chr3_2:78196942-78196961 None:intergenic 25.0%
!! AAATTTCATTCTTTTTACGG+TGG - chr3_2:78197357-78197376 None:intergenic 25.0%
! TGAAAATAGAATGGTTCTTT+CGG - chr3_2:78197476-78197495 None:intergenic 25.0%
! TGCACATTAATGTTTATGTT+TGG + chr3_2:78197530-78197549 Msa0427520:intron 25.0%
!!! TTTTTTTATGTAGACTTGCA+AGG + chr3_2:78197604-78197623 Msa0427520:intron 25.0%
! ACGACTATTTATACATCAAT+GGG - chr3_2:78197745-78197764 None:intergenic 25.0%
! TACGACTATTTATACATCAA+TGG - chr3_2:78197746-78197765 None:intergenic 25.0%
! GTTCATTGAGTAAAGTATAT+AGG + chr3_2:78197848-78197867 Msa0427520:three_prime_UTR 25.0%
! CTAATAGGTTTGTTTGACTT+TGG + chr3_2:78193496-78193515 Msa0427520:intron 30.0%
CTGTAAATGACACCAAAATA+TGG + chr3_2:78193563-78193582 Msa0427520:intron 30.0%
AAATGACACCAAAATATGGT+TGG + chr3_2:78193567-78193586 Msa0427520:intron 30.0%
! AGCATATACCAACCATATTT+TGG - chr3_2:78193578-78193597 None:intergenic 30.0%
!!! CTTCTTTTTTTACCATCAGT+TGG + chr3_2:78193614-78193633 Msa0427520:intron 30.0%
ATACTTCAGAAAAGACACTA+TGG - chr3_2:78193879-78193898 None:intergenic 30.0%
ACAAGAAACACTAGAATAAC+CGG + chr3_2:78193920-78193939 Msa0427520:intron 30.0%
CTTTCAGTAATATGAAGCAA+CGG - chr3_2:78194041-78194060 None:intergenic 30.0%
ATCAACCTTCTTCTTATACT+GGG + chr3_2:78194171-78194190 Msa0427520:CDS 30.0%
ATAGAGCATATTAGCAGTAA+AGG + chr3_2:78194389-78194408 Msa0427520:intron 30.0%
TAGAGCATATTAGCAGTAAA+GGG + chr3_2:78194390-78194409 Msa0427520:intron 30.0%
ATAGAGCATATTAGCAGTAA+AGG + chr3_2:78194389-78194408 Msa0427520:intron 30.0%
TAGAGCATATTAGCAGTAAA+GGG + chr3_2:78194390-78194409 Msa0427520:intron 30.0%
TAGTTAAGTCTAACATGTGA+AGG - chr3_2:78194599-78194618 None:intergenic 30.0%
AGAAGATTTATGACACTTTC+AGG + chr3_2:78194641-78194660 Msa0427520:intron 30.0%
AGTCACACTGTGATAATTAT+AGG + chr3_2:78194813-78194832 Msa0427520:intron 30.0%
! GATAATCTGATACCATGTTT+TGG + chr3_2:78194942-78194961 Msa0427520:CDS 30.0%
AAACTTGACAGTTTCAAATG+TGG - chr3_2:78195156-78195175 None:intergenic 30.0%
GCTATGTTGAATTTGTGATT+AGG + chr3_2:78195349-78195368 Msa0427520:intron 30.0%
CTTGTTGACAACTTATTGTT+TGG + chr3_2:78195545-78195564 Msa0427520:intron 30.0%
!! TAACCTTTTTGTTTGGATGT+TGG + chr3_2:78195592-78195611 Msa0427520:intron 30.0%
TTTGGATGTTGGTACATAAT+AGG + chr3_2:78195603-78195622 Msa0427520:intron 30.0%
AAATATCAAGAGAAAGTCTG+TGG - chr3_2:78195633-78195652 None:intergenic 30.0%
TTACCTCACAATTCAAGATA+TGG - chr3_2:78195688-78195707 None:intergenic 30.0%
AATTGTGAGGTAACTTGAAT+TGG + chr3_2:78195695-78195714 Msa0427520:intron 30.0%
!! AACTCCCTCATTTTTGTTAT+AGG + chr3_2:78195764-78195783 Msa0427520:intron 30.0%
!! ACTCCCTCATTTTTGTTATA+GGG + chr3_2:78195765-78195784 Msa0427520:intron 30.0%
! AAGAAAGCACATCATGAAAT+GGG - chr3_2:78195915-78195934 None:intergenic 30.0%
! AAAGAAAGCACATCATGAAA+TGG - chr3_2:78195916-78195935 None:intergenic 30.0%
AGAAAAAACAATAGAAAGGC+AGG - chr3_2:78195948-78195967 None:intergenic 30.0%
!!! TCAATTATTTTGGTTGGAGT+TGG + chr3_2:78196164-78196183 Msa0427520:CDS 30.0%
ACTTTGACGATAACATTACT+GGG + chr3_2:78196213-78196232 Msa0427520:CDS 30.0%
CCTTTAATATCTCTCTACAA+AGG - chr3_2:78196311-78196330 None:intergenic 30.0%
CCTTTGTAGAGAGATATTAA+AGG + chr3_2:78196308-78196327 Msa0427520:intron 30.0%
TAGAGAGATATTAAAGGATC+AGG + chr3_2:78196314-78196333 Msa0427520:intron 30.0%
AATGTAAGATGCCTTACAAA+TGG + chr3_2:78196448-78196467 Msa0427520:intron 30.0%
ATGTAAGATGCCTTACAAAT+GGG + chr3_2:78196449-78196468 Msa0427520:intron 30.0%
ATTAGGTAAACCCATTTGTA+AGG - chr3_2:78196462-78196481 None:intergenic 30.0%
TTACCTAATGTCTGATACTA+TGG + chr3_2:78196473-78196492 Msa0427520:intron 30.0%
TAACCATAGTATCAGACATT+AGG - chr3_2:78196479-78196498 None:intergenic 30.0%
CTGATACTATGGTTAGATTA+TGG + chr3_2:78196484-78196503 Msa0427520:intron 30.0%
ATACTATGGTTAGATTATGG+AGG + chr3_2:78196487-78196506 Msa0427520:intron 30.0%
ATGATTATCACAAAACAGCA+TGG - chr3_2:78196577-78196596 None:intergenic 30.0%
GTTCTGTATTACTAGATTCA+AGG + chr3_2:78196879-78196898 Msa0427520:intron 30.0%
TGATCTATTATTTCCTTAGG+TGG - chr3_2:78196975-78196994 None:intergenic 30.0%
TCGTGATCTATTATTTCCTT+AGG - chr3_2:78196978-78196997 None:intergenic 30.0%
!! TTCGGATTTGTTAGACAAAT+GGG - chr3_2:78197178-78197197 None:intergenic 30.0%
TGTGCAAATAGTAAAACTTG+AGG + chr3_2:78197248-78197267 Msa0427520:intron 30.0%
!!! TTTCACTAAGCACCATTTTT+TGG + chr3_2:78197303-78197322 Msa0427520:intron 30.0%
! GTGAACATTTTGAATGTCAT+TGG + chr3_2:78197424-78197443 Msa0427520:intron 30.0%
GACTATTTATACATCAATGG+GGG - chr3_2:78197743-78197762 None:intergenic 30.0%
CGACTATTTATACATCAATG+GGG - chr3_2:78197744-78197763 None:intergenic 30.0%
! CTCAATGAACACTTTGTTTA+AGG - chr3_2:78197838-78197857 None:intergenic 30.0%
!!! CTTGGTTTTATGATTGACTG+AGG - chr3_2:78193283-78193302 None:intergenic 35.0%
!! CCTTGTTGATTTGATTTGCT+TGG - chr3_2:78193301-78193320 None:intergenic 35.0%
CCAAGCAAATCAAATCAACA+AGG + chr3_2:78193298-78193317 Msa0427520:five_prime_UTR 35.0%
ACTTATTGATGAACTGCTTC+TGG + chr3_2:78193398-78193417 Msa0427520:intron 35.0%
GTTTGTTCTAATGATTACCG+AGG - chr3_2:78193470-78193489 None:intergenic 35.0%
ATCAAAGCTAATCCAACTGA+TGG - chr3_2:78193629-78193648 None:intergenic 35.0%
TTACTTTGTATGTGAGTTGC+TGG + chr3_2:78193697-78193716 Msa0427520:intron 35.0%
TGCTTCATATTACTGAAAGC+AGG + chr3_2:78194042-78194061 Msa0427520:intron 35.0%
AACACCCTCCTAATTATGAT+GGG + chr3_2:78194126-78194145 Msa0427520:CDS 35.0%
AACTCCCATCATAATTAGGA+GGG - chr3_2:78194133-78194152 None:intergenic 35.0%
ACTGAACTCCCATCATAATT+AGG - chr3_2:78194137-78194156 None:intergenic 35.0%
CATCAACCTTCTTCTTATAC+TGG + chr3_2:78194170-78194189 Msa0427520:CDS 35.0%
AAACTCCCAGTATAAGAAGA+AGG - chr3_2:78194179-78194198 None:intergenic 35.0%
TTCTTCTTATACTGGGAGTT+TGG + chr3_2:78194178-78194197 Msa0427520:CDS 35.0%
! ATAAGAAGAGGGTTGATCAT+AGG - chr3_2:78194213-78194232 None:intergenic 35.0%
TAGCATGTGAAGATGATTGA+TGG - chr3_2:78194262-78194281 None:intergenic 35.0%
ATCTTCACATGCTACAAGTT+CGG + chr3_2:78194268-78194287 Msa0427520:CDS 35.0%
! AAATTGTCGGCTATATATGC+TGG - chr3_2:78194323-78194342 None:intergenic 35.0%
ATCCAATGAGCTGAAATTGT+CGG - chr3_2:78194336-78194355 None:intergenic 35.0%
AGAGCATATTAGCAGTAAAG+GGG + chr3_2:78194391-78194410 Msa0427520:intron 35.0%
TAGTCAAGTCTAACATGTGA+AGG - chr3_2:78194434-78194453 None:intergenic 35.0%
AGAGCATATTAGCAGTAAAG+GGG + chr3_2:78194391-78194410 Msa0427520:intron 35.0%
ATTTCACCAAAAGCAATGAG+TGG + chr3_2:78194721-78194740 Msa0427520:CDS 35.0%
TAGGTAAGTATTCGTTCCAT+CGG + chr3_2:78194832-78194851 Msa0427520:intron 35.0%
ATTGCTTGCTCATATGGATT+AGG - chr3_2:78194885-78194904 None:intergenic 35.0%
!! TAAATTCAGAAGCATCTGCT+TGG - chr3_2:78194986-78195005 None:intergenic 35.0%
CCATGACAAACTCTATTATC+AGG - chr3_2:78195096-78195115 None:intergenic 35.0%
CCTGATAATAGAGTTTGTCA+TGG + chr3_2:78195093-78195112 Msa0427520:CDS 35.0%
!! TAGAGTTTGTCATGGTTTTG+AGG + chr3_2:78195101-78195120 Msa0427520:CDS 35.0%
! CTGTCTGTCTAGAATAACTA+TGG - chr3_2:78195245-78195264 None:intergenic 35.0%
! TTTTACGTAACTTTGAGCCT+AGG + chr3_2:78195315-78195334 Msa0427520:intron 35.0%
TTAACTTAGAAGGAGAGCTT+TGG - chr3_2:78195575-78195594 None:intergenic 35.0%
GTACCAACATCCAAACAAAA+AGG - chr3_2:78195598-78195617 None:intergenic 35.0%
GATGTTGGTACATAATAGGA+TGG + chr3_2:78195607-78195626 Msa0427520:intron 35.0%
TTGCCATATCTTGAATTGTG+AGG + chr3_2:78195682-78195701 Msa0427520:intron 35.0%
TGGCCCTATAACAAAAATGA+GGG - chr3_2:78195771-78195790 None:intergenic 35.0%
TTGGCCCTATAACAAAAATG+AGG - chr3_2:78195772-78195791 None:intergenic 35.0%
AATTGCTGCATCAATTACAG+GGG - chr3_2:78195804-78195823 None:intergenic 35.0%
CAATTGCTGCATCAATTACA+GGG - chr3_2:78195805-78195824 None:intergenic 35.0%
TCAATTGCTGCATCAATTAC+AGG - chr3_2:78195806-78195825 None:intergenic 35.0%
GTTCTTGTCATTATTGCTGA+TGG + chr3_2:78195857-78195876 Msa0427520:CDS 35.0%
! AGAAAGCACATCATGAAATG+GGG - chr3_2:78195914-78195933 None:intergenic 35.0%
TGCAGCAATTATGGAAGTAA+TGG - chr3_2:78196049-78196068 None:intergenic 35.0%
TTACTTCCATAATTGCTGCA+AGG + chr3_2:78196049-78196068 Msa0427520:CDS 35.0%
AATGTACCTTGCAGCAATTA+TGG - chr3_2:78196058-78196077 None:intergenic 35.0%
CCAACCAAAATAATTGAGAG+AGG - chr3_2:78196161-78196180 None:intergenic 35.0%
!!! CCTCTCTCAATTATTTTGGT+TGG + chr3_2:78196158-78196177 Msa0427520:CDS 35.0%
CACTTTGACGATAACATTAC+TGG + chr3_2:78196212-78196231 Msa0427520:CDS 35.0%
TACCATAAACGCAGCAATAT+CGG - chr3_2:78196281-78196300 None:intergenic 35.0%
! GTTTTGTGAAACTGTTCTCA+TGG + chr3_2:78196386-78196405 Msa0427520:intron 35.0%
!!! TTTTCTAAGATACGGAATGC+TGG - chr3_2:78196622-78196641 None:intergenic 35.0%
AAAGATCATGTCTGAGAACA+CGG + chr3_2:78196739-78196758 Msa0427520:CDS 35.0%
CTGAAATGGAATCTCCATAA+GGG - chr3_2:78196801-78196820 None:intergenic 35.0%
ACTGAAATGGAATCTCCATA+AGG - chr3_2:78196802-78196821 None:intergenic 35.0%
CTATTATTTCCTTAGGTGGT+GGG - chr3_2:78196971-78196990 None:intergenic 35.0%
TCTATTATTTCCTTAGGTGG+TGG - chr3_2:78196972-78196991 None:intergenic 35.0%
!! GAATCGAAATTTGTTATGCG+TGG - chr3_2:78197020-78197039 None:intergenic 35.0%
CATAGCAGTAGAAAGATACA+GGG - chr3_2:78197095-78197114 None:intergenic 35.0%
TCATAGCAGTAGAAAGATAC+AGG - chr3_2:78197096-78197115 None:intergenic 35.0%
!! TCGGATTTGTTAGACAAATG+GGG - chr3_2:78197177-78197196 None:intergenic 35.0%
!! CTTCGGATTTGTTAGACAAA+TGG - chr3_2:78197179-78197198 None:intergenic 35.0%
CATTTGTCTAACAAATCCGA+AGG + chr3_2:78197177-78197196 Msa0427520:CDS 35.0%
AAATAGAATGGTTCTTTCGG+TGG - chr3_2:78197473-78197492 None:intergenic 35.0%
!! GAATCAGATCCACTTTTACA+TGG - chr3_2:78197559-78197578 None:intergenic 35.0%
AGAAATGTTGAGTGTAAACG+TGG + chr3_2:78197811-78197830 Msa0427520:intron 35.0%
TGATTCAGAGACAGAGACTT+TGG - chr3_2:78193193-78193212 None:intergenic 40.0%
!! CACATAATTTGGTTCTGCCT+CGG + chr3_2:78193450-78193469 Msa0427520:intron 40.0%
TTTGTATGTGAGTTGCTGGA+AGG + chr3_2:78193701-78193720 Msa0427520:intron 40.0%
AACAAAAACCAAACCACCAG+AGG - chr3_2:78193984-78194003 None:intergenic 40.0%
TCAGTAATATGAAGCAACGG+AGG - chr3_2:78194038-78194057 None:intergenic 40.0%
AAGCAGGCTTAGTAGCAATA+TGG + chr3_2:78194058-78194077 Msa0427520:exon 40.0%
AGCAGGCTTAGTAGCAATAT+GGG + chr3_2:78194059-78194078 Msa0427520:exon 40.0%
! CATCATAATTAGGAGGGTGT+TGG - chr3_2:78194127-78194146 None:intergenic 40.0%
CAACACCCTCCTAATTATGA+TGG + chr3_2:78194125-78194144 Msa0427520:CDS 40.0%
GAACTCCCATCATAATTAGG+AGG - chr3_2:78194134-78194153 None:intergenic 40.0%
GATCAACCCTCTTCTTATAC+CGG + chr3_2:78194215-78194234 Msa0427520:CDS 40.0%
GAACTTCCGGTATAAGAAGA+GGG - chr3_2:78194224-78194243 None:intergenic 40.0%
CTCTTCTTATACCGGAAGTT+CGG + chr3_2:78194223-78194242 Msa0427520:CDS 40.0%
TCTTCTTATACCGGAAGTTC+GGG + chr3_2:78194224-78194243 Msa0427520:CDS 40.0%
CATGTGAAGATGATTGATGG+TGG - chr3_2:78194259-78194278 None:intergenic 40.0%
CAATTTCAGCTCATTGGATC+AGG + chr3_2:78194337-78194356 Msa0427520:CDS 40.0%
AATCGATGCAGCTTGAAAAG+GGG - chr3_2:78194541-78194560 None:intergenic 40.0%
CAATCGATGCAGCTTGAAAA+GGG - chr3_2:78194542-78194561 None:intergenic 40.0%
ACAATCGATGCAGCTTGAAA+AGG - chr3_2:78194543-78194562 None:intergenic 40.0%
AGAGCCTTCATCATATTGGA+AGG + chr3_2:78194856-78194875 Msa0427520:CDS 40.0%
GAGCCTTCATCATATTGGAA+GGG + chr3_2:78194857-78194876 Msa0427520:CDS 40.0%
ATGGAGATTGCTTGCTCATA+TGG - chr3_2:78194891-78194910 None:intergenic 40.0%
GAGCAAGCAATCTCCATAAT+TGG + chr3_2:78194894-78194913 Msa0427520:CDS 40.0%
AAGCAATCTCCATAATTGGC+CGG + chr3_2:78194898-78194917 Msa0427520:CDS 40.0%
CATCAAAAGTAGACAGAGTC+CGG - chr3_2:78194920-78194939 None:intergenic 40.0%
!!! CTGATACCATGTTTTGGGTT+TGG + chr3_2:78194948-78194967 Msa0427520:CDS 40.0%
TAACTTTGAGCCTAGGATTG+AGG + chr3_2:78195322-78195341 Msa0427520:intron 40.0%
CTTGGATTCTAACAAGCTAC+TGG + chr3_2:78195486-78195505 Msa0427520:intron 40.0%
GAGTTAGCATAGCATCAAAC+AGG - chr3_2:78195519-78195538 None:intergenic 40.0%
ATTACAGGGGCAAATGAAGT+TGG - chr3_2:78195791-78195810 None:intergenic 40.0%
TGATGCAGCAATTGACATTG+TGG + chr3_2:78195811-78195830 Msa0427520:CDS 40.0%
GACATTGTGGAACGAAACAA+CGG + chr3_2:78195824-78195843 Msa0427520:CDS 40.0%
! TGTCATTATTGCTGATGGAC+AGG + chr3_2:78195862-78195881 Msa0427520:CDS 40.0%
! GAATGTTTTTCTTTTCCCCC+AGG + chr3_2:78195969-78195988 Msa0427520:intron 40.0%
!! ACCAGGATTTCTAGTAACCT+GGG - chr3_2:78195989-78196008 None:intergenic 40.0%
!! TACCAGGATTTCTAGTAACC+TGG - chr3_2:78195990-78196009 None:intergenic 40.0%
GTAATGGTTGCTTGTTCTTG+TGG - chr3_2:78196033-78196052 None:intergenic 40.0%
!!! ATTTTGGTTGGAGTTGGAGA+TGG + chr3_2:78196170-78196189 Msa0427520:CDS 40.0%
ATCCGATATTGCTGCGTTTA+TGG + chr3_2:78196276-78196295 Msa0427520:intron 40.0%
GTTAGATTATGGAGGACAGT+GGG + chr3_2:78196495-78196514 Msa0427520:intron 40.0%
CGCAAATTCTGTTTCCTTCT+TGG - chr3_2:78196771-78196790 None:intergenic 40.0%
TGGAGATTCCATTTCAGTAC+CGG + chr3_2:78196804-78196823 Msa0427520:CDS 40.0%
! GTTGTATATTTTGTGCTGCC+CGG - chr3_2:78196826-78196845 None:intergenic 40.0%
ACAACTTGCCAAGTAAGTTG+TGG + chr3_2:78196841-78196860 Msa0427520:intron 40.0%
CATAAACGGGATTTGACACT+CGG - chr3_2:78196909-78196928 None:intergenic 40.0%
TGGTTCACTACTGCATAAAC+GGG - chr3_2:78196922-78196941 None:intergenic 40.0%
CTGGTTCACTACTGCATAAA+CGG - chr3_2:78196923-78196942 None:intergenic 40.0%
TCTAACAAATCCGAAGGACA+TGG + chr3_2:78197183-78197202 Msa0427520:CDS 40.0%
!! ACGTGTGTGATTTTGATCGA+AGG - chr3_2:78197404-78197423 None:intergenic 40.0%
!! TCAGATCCACTTTTACATGG+AGG - chr3_2:78197556-78197575 None:intergenic 40.0%
TATCTTTATGCCCTATGTGC+AGG + chr3_2:78197642-78197661 Msa0427520:CDS 40.0%
!! TAATTTGCTGCCTGCACATA+GGG - chr3_2:78197655-78197674 None:intergenic 40.0%
GCGGTTCATCGTAAACAAAC+CGG - chr3_2:78193942-78193961 None:intergenic 45.0%
CGAACTTCCGGTATAAGAAG+AGG - chr3_2:78194225-78194244 None:intergenic 45.0%
CTTCTTATACCGGAAGTTCG+GGG + chr3_2:78194225-78194244 Msa0427520:CDS 45.0%
GTTAGTATTCCCCGAACTTC+CGG - chr3_2:78194237-78194256 None:intergenic 45.0%
!! CTGGTTGCTTGTTATGACGA+TGG - chr3_2:78194304-78194323 None:intergenic 45.0%
AGCCGACAATTTCAGCTCAT+TGG + chr3_2:78194331-78194350 Msa0427520:CDS 45.0%
!! GTTTCTGCTTTGAGAGAAGC+TGG + chr3_2:78194666-78194685 Msa0427520:CDS 45.0%
!! TGCTTTGAGAGAAGCTGGTT+TGG + chr3_2:78194671-78194690 Msa0427520:CDS 45.0%
ACCAAAAGCAATGAGTGGAC+AGG + chr3_2:78194726-78194745 Msa0427520:CDS 45.0%
! ACCTGTCCACTCATTGCTTT+TGG - chr3_2:78194730-78194749 None:intergenic 45.0%
TATGATGAAGGCTCTTCCGA+TGG - chr3_2:78194851-78194870 None:intergenic 45.0%
CGGAAGAGCCTTCATCATAT+TGG + chr3_2:78194852-78194871 Msa0427520:CDS 45.0%
GAGCCCTTCCAATATGATGA+AGG - chr3_2:78194863-78194882 None:intergenic 45.0%
CCATCACCAAACCCAAAACA+TGG - chr3_2:78194957-78194976 None:intergenic 45.0%
!!! CCATGTTTTGGGTTTGGTGA+TGG + chr3_2:78194954-78194973 Msa0427520:CDS 45.0%
CATAGCTCAACCTCAATCCT+AGG - chr3_2:78195335-78195354 None:intergenic 45.0%
!! CAGGATTTCTAGTAACCTGG+GGG - chr3_2:78195987-78196006 None:intergenic 45.0%
!! CCAGGATTTCTAGTAACCTG+GGG - chr3_2:78195988-78196007 None:intergenic 45.0%
! TGTGGACTAAGCTTTCCATG+CGG - chr3_2:78196015-78196034 None:intergenic 45.0%
GCGCGTATTTGACAACTTTC+AGG + chr3_2:78196235-78196254 Msa0427520:CDS 45.0%
GGTTAGATTATGGAGGACAG+TGG + chr3_2:78196494-78196513 Msa0427520:intron 45.0%
GGAGATTCCATTTCAGTACC+GGG + chr3_2:78196805-78196824 Msa0427520:CDS 45.0%
!! GAAACATACTGGTTCTGCAC+TGG - chr3_2:78197063-78197082 None:intergenic 45.0%
! AATCCGAAGGACATGGCTTT+TGG + chr3_2:78197190-78197209 Msa0427520:CDS 45.0%
CATCCAAAAGCCATGTCCTT+CGG - chr3_2:78197196-78197215 None:intergenic 45.0%
! AAGGACATGGCTTTTGGATG+CGG + chr3_2:78197196-78197215 Msa0427520:CDS 45.0%
! CTTGGCGGGTGAAAATAGAA+TGG - chr3_2:78197485-78197504 None:intergenic 45.0%
! TTCTATTTTCACCCGCCAAG+TGG + chr3_2:78197485-78197504 Msa0427520:intron 45.0%
GTTTGGCCTCCATGTAAAAG+TGG + chr3_2:78197547-78197566 Msa0427520:intron 45.0%
ATGTAGACTTGCAAGGAGTG+TGG + chr3_2:78197611-78197630 Msa0427520:intron 45.0%
!! GTAATTTGCTGCCTGCACAT+AGG - chr3_2:78197656-78197675 None:intergenic 45.0%
CTAGAAAGTGACAACGCGTG+CGG - chr3_2:78193961-78193980 None:intergenic 50.0%
!! CGTTGTCACTTTCTAGCCTC+TGG + chr3_2:78193965-78193984 Msa0427520:intron 50.0%
!! TGTCACTTTCTAGCCTCTGG+TGG + chr3_2:78193968-78193987 Msa0427520:intron 50.0%
! CTTTCTAGCCTCTGGTGGTT+TGG + chr3_2:78193973-78193992 Msa0427520:intron 50.0%
AGACAGAGTCCGGCCAATTA+TGG - chr3_2:78194910-78194929 None:intergenic 50.0%
CCCCAGGTTACTAGAAATCC+TGG + chr3_2:78195985-78196004 Msa0427520:intron 50.0%
TTGGAGTTGGAGATGGACCA+TGG + chr3_2:78196177-78196196 Msa0427520:CDS 50.0%
TGGAGTTGGAGATGGACCAT+GGG + chr3_2:78196178-78196197 Msa0427520:CDS 50.0%
AAGTGCTTCATCTCGTCCCA+TGG - chr3_2:78196197-78196216 None:intergenic 50.0%
!! GAACACGGAAGCATCCAAGA+AGG + chr3_2:78196754-78196773 Msa0427520:CDS 50.0%
! ATTTGCGCTTGCTGCCCTTA+TGG + chr3_2:78196784-78196803 Msa0427520:CDS 50.0%
!! ATTTCCTTAGGTGGTGGGAG+AGG - chr3_2:78196966-78196985 None:intergenic 50.0%
GGAGCGACAAGGAAACATAC+TGG - chr3_2:78197074-78197093 None:intergenic 50.0%
GAAAGATACAGGGAGCGACA+AGG - chr3_2:78197085-78197104 None:intergenic 50.0%
TGCGTGGTAATTCCACTTGG+CGG - chr3_2:78197500-78197519 None:intergenic 50.0%
CTCTGCGTGGTAATTCCACT+TGG - chr3_2:78197503-78197522 None:intergenic 50.0%
CAAGTGGAATTACCACGCAG+AGG + chr3_2:78197501-78197520 Msa0427520:intron 50.0%
TGTGCATTTGTTCCTCTGCG+TGG - chr3_2:78197516-78197535 None:intergenic 50.0%
AGAAATCCTGGTACGCCGCA+TGG + chr3_2:78195997-78196016 Msa0427520:CDS 55.0%
! TGTGCTGCCCGGTACTGAAA+TGG - chr3_2:78196815-78196834 None:intergenic 55.0%
AAGACCTCTCCCACCACCTA+AGG + chr3_2:78196959-78196978 Msa0427520:CDS 55.0%
!! CATACTGGTTCTGCACTGGC+TGG - chr3_2:78197059-78197078 None:intergenic 55.0%
GCGTGGTAATTCCACTTGGC+GGG - chr3_2:78197499-78197518 None:intergenic 55.0%
AGCTTTCCATGCGGCGTACC+AGG - chr3_2:78196006-78196025 None:intergenic 60.0%
!! TCTGCACTGGCTGGAGCTGT+TGG - chr3_2:78197050-78197069 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78193143 78197890 78193143 ID=Msa0427520;Name=Msa0427520
chr3_2 mRNA 78193143 78197890 78193143 ID=Msa0427520-mRNA-1;Parent=Msa0427520;Name=Msa0427520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=207|1|1|1|0.83|0.69|13|166|438
chr3_2 exon 78193143 78193319 78193143 ID=Msa0427520-mRNA-1:exon:20538;Parent=Msa0427520-mRNA-1
chr3_2 exon 78194047 78194358 78194047 ID=Msa0427520-mRNA-1:exon:20539;Parent=Msa0427520-mRNA-1
chr3_2 exon 78194663 78194747 78194663 ID=Msa0427520-mRNA-1:exon:20540;Parent=Msa0427520-mRNA-1
chr3_2 exon 78194835 78194975 78194835 ID=Msa0427520-mRNA-1:exon:20541;Parent=Msa0427520-mRNA-1
chr3_2 exon 78195058 78195171 78195058 ID=Msa0427520-mRNA-1:exon:20542;Parent=Msa0427520-mRNA-1
chr3_2 exon 78195786 78195883 78195786 ID=Msa0427520-mRNA-1:exon:20543;Parent=Msa0427520-mRNA-1
chr3_2 exon 78195991 78196070 78195991 ID=Msa0427520-mRNA-1:exon:20544;Parent=Msa0427520-mRNA-1
chr3_2 exon 78196151 78196256 78196151 ID=Msa0427520-mRNA-1:exon:20545;Parent=Msa0427520-mRNA-1
chr3_2 exon 78196725 78196852 78196725 ID=Msa0427520-mRNA-1:exon:20546;Parent=Msa0427520-mRNA-1
chr3_2 exon 78196932 78197073 78196932 ID=Msa0427520-mRNA-1:exon:20547;Parent=Msa0427520-mRNA-1
chr3_2 exon 78197169 78197225 78197169 ID=Msa0427520-mRNA-1:exon:20548;Parent=Msa0427520-mRNA-1
chr3_2 exon 78197617 78197821 78197617 ID=Msa0427520-mRNA-1:exon:20549;Parent=Msa0427520-mRNA-1
chr3_2 exon 78197846 78197890 78197846 ID=Msa0427520-mRNA-1:exon:20550;Parent=Msa0427520-mRNA-1
chr3_2 five_prime_UTR 78193143 78193319 78193143 ID=Msa0427520-mRNA-1:five_prime_utr;Parent=Msa0427520-mRNA-1
chr3_2 five_prime_UTR 78194047 78194076 78194047 ID=Msa0427520-mRNA-1:five_prime_utr;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78194077 78194358 78194077 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78194663 78194747 78194663 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78194835 78194975 78194835 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78195058 78195171 78195058 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78195786 78195883 78195786 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78195991 78196070 78195991 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78196151 78196256 78196151 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78196725 78196852 78196725 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78196932 78197073 78196932 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78197169 78197225 78197169 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 CDS 78197617 78197700 78197617 ID=Msa0427520-mRNA-1:cds;Parent=Msa0427520-mRNA-1
chr3_2 three_prime_UTR 78197701 78197821 78197701 ID=Msa0427520-mRNA-1:three_prime_utr;Parent=Msa0427520-mRNA-1
chr3_2 three_prime_UTR 78197846 78197890 78197846 ID=Msa0427520-mRNA-1:three_prime_utr;Parent=Msa0427520-mRNA-1
Gene Sequence

>Msa0427520

ATGGGAAATACAGAATCAATGTCTGAATCTCAACATGAATTTTACTACCAACACCCTCCTAATTATGATGGGAGTTCAGTGAGTAATAGTTATCATCAACCTTCTTCTTATACTGGGAGTTTGGATAGCACTACCTATGATCAACCCTCTTCTTATACCGGAAGTTCGGGGAATACTAACCACCATCAATCATCTTCACATGCTACAAGTTCGGTGAATACTCACCATCGTCATAACAAGCAACCAGCATATATAGCCGACAATTTCAGCTCATTGGATCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTTTGGAATCTTCAAATTTGATACTTGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGTAAGTATTCGTTCCATCGGAAGAGCCTTCATCATATTGGAAGGGCTCCTAATCCATATGAGCAAGCAATCTCCATAATTGGCCGGACTCTGTCTACTTTTGATGAAGATAATCTGATACCATGTTTTGGGTTTGGTGATGCTTCTACACACGATCAGAATGTGTTCAGCTTTTATCCTGATAATAGAGTTTGTCATGGTTTTGAGGAAGTACTTACACGCTATAGACTGATTATTCCACATTTGAAACTGTCAAGGCCAACTTCATTTGCCCCTGTAATTGATGCAGCAATTGACATTGTGGAACGAAACAACGGTCAATATCACGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATCCTGGTACGCCGCATGGAAAGCTTAGTCCACAAGAACAAGCAACCATTACTTCCATAATTGCTGCAAGTCATTATCCTCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGACGATAACATTACTGGGCGCGTATTTGACAACTTTCAGTTTGTAAACTTCACAAAGATCATGTCTGAGAACACGGAAGCATCCAAGAAGGAAACAGAATTTGCGCTTGCTGCCCTTATGGAGATTCCATTTCAGTACCGGGCAGCACAAAATATACAACTTGCCAATAGTGAACCAGTTCATTATCAACATAAAAGACCTCTCCCACCACCTAAGGAAATAATAGATCACGATAATGCATTCATAGTGACTCCACGCATAACAAATTTCGATTCAATTGAACCAACAGCTCCAGCCAGTGCAGAACCAGTATGCCCCATTTGTCTAACAAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAGGAGTGTGGTGCAACATTATCTTTATGCCCTATGTGCAGGCAGCAAATTACTACTCGCTTGAGATTATATACTTGA

Protein sequence

>Msa0427520

MGNTESMSESQHEFYYQHPPNYDGSSVSNSYHQPSSYTGSLDSTTYDQPSSYTGSSGNTNHHQSSSHATSSVNTHHRHNKQPAYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKYSFHRKSLHHIGRAPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDQNVFSFYPDNRVCHGFEEVLTRYRLIIPHLKLSRPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPGTPHGKLSPQEQATITSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRVFDNFQFVNFTKIMSENTEASKKETEFALAALMEIPFQYRAAQNIQLANSEPVHYQHKRPLPPPKEIIDHDNAFIVTPRITNFDSIEPTAPASAEPVCPICLTNPKDMAFGCGHTTCKECGATLSLCPMCRQQITTRLRLYT*