Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406280 | KEH33777.1 | 88.189 | 127 | 15 | 0 | 4 | 130 | 14 | 140 | 6.01e-77 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406280 | A0A072UVZ9 | 88.189 | 127 | 15 | 0 | 4 | 130 | 14 | 140 | 2.87e-77 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0406280 | 0.819573 | 1.081684e-52 | -8.615850e-47 |
| Msa0145750 | Msa0406280 | 0.816307 | 5.917296e-52 | -8.615850e-47 |
| Msa0406280 | Msa0414420 | 0.821533 | 3.837701e-53 | -8.615850e-47 |
| Msa0406280 | Msa0451730 | 0.850794 | 1.348485e-60 | -8.615850e-47 |
| Msa0406280 | Msa0452900 | 0.838223 | 3.266776e-57 | -8.615850e-47 |
| Msa0406280 | Msa0564890 | 0.802969 | 4.359139e-49 | -8.615850e-47 |
| Msa0406280 | Msa0726140 | 0.813005 | 3.186120e-51 | -8.615850e-47 |
| Msa0406280 | Msa0743810 | 0.841129 | 5.728357e-58 | -8.615850e-47 |
| Msa0406280 | Msa0745060 | 0.839437 | 1.585543e-57 | -8.615850e-47 |
| Msa0406280 | Msa0783160 | 0.812957 | 3.263828e-51 | -8.615850e-47 |
| Msa0406280 | Msa0808010 | 0.808193 | 3.493359e-50 | -8.615850e-47 |
| Msa0406280 | Msa0825860 | 0.841839 | 3.725026e-58 | -8.615850e-47 |
| Msa0406280 | Msa0846330 | 0.803729 | 3.033410e-49 | -8.615850e-47 |
| Msa0406280 | Msa0865320 | 0.825214 | 5.296070e-54 | -8.615850e-47 |
| Msa0406280 | Msa0989060 | 0.810192 | 1.302579e-50 | -8.615850e-47 |
| Msa0406280 | Msa1016280 | 0.822268 | 2.593531e-53 | -8.615850e-47 |
| Msa0406280 | Msa1025360 | 0.843261 | 1.562118e-58 | -8.615850e-47 |
| Msa0406280 | Msa1025370 | 0.834511 | 2.873591e-56 | -8.615850e-47 |
| Msa0406280 | Msa1030060 | 0.826979 | 2.014789e-54 | -8.615850e-47 |
| Msa0406280 | Msa1044830 | 0.841563 | 4.404628e-58 | -8.615850e-47 |
| Msa0406280 | Msa1044840 | 0.856630 | 2.824911e-62 | -8.615850e-47 |
| Msa0406280 | Msa1092990 | 0.816994 | 4.150940e-52 | -8.615850e-47 |
| Msa0406280 | Msa1100980 | 0.854636 | 1.078715e-61 | -8.615850e-47 |
| Msa0406280 | Msa1109440 | 0.812579 | 3.949465e-51 | -8.615850e-47 |
| Msa0406280 | Msa1121200 | 0.800738 | 1.251879e-48 | -8.615850e-47 |
| Msa0406280 | Msa1135740 | 0.838278 | 3.161875e-57 | -8.615850e-47 |
| Msa0406280 | Msa1146110 | 0.811799 | 5.844379e-51 | -8.615850e-47 |
| Msa0406280 | Msa1187940 | 0.800477 | 1.415143e-48 | -8.615850e-47 |
| Msa0406280 | Msa1192640 | 0.829248 | 5.725760e-55 | -8.615850e-47 |
| Msa0406280 | Msa1269670 | 0.822768 | 1.984663e-53 | -8.615850e-47 |
| Msa0406280 | Msa1270230 | 0.824616 | 7.330601e-54 | -8.615850e-47 |
| Msa0406280 | Msa1270240 | 0.815667 | 8.222560e-52 | -8.615850e-47 |
| Msa0406280 | Msa1270270 | 0.818290 | 2.117950e-52 | -8.615850e-47 |
| Msa0406280 | Msa1283330 | 0.824072 | 9.841877e-54 | -8.615850e-47 |
| Msa0406280 | Msa1285930 | 0.827989 | 1.153613e-54 | -8.615850e-47 |
| Msa0406280 | Msa1287800 | 0.836697 | 8.040771e-57 | -8.615850e-47 |
| Msa0406280 | Msa1287810 | 0.840242 | 9.783012e-58 | -8.615850e-47 |
| Msa0406280 | Msa1305480 | 0.815971 | 7.032663e-52 | -8.615850e-47 |
| Msa0406280 | Msa1320300 | 0.816091 | 6.611764e-52 | -8.615850e-47 |
| Msa0406280 | Msa1404000 | 0.814743 | 1.318495e-51 | -8.615850e-47 |
| Msa0406280 | Msa1415310 | 0.825845 | 3.754205e-54 | -8.615850e-47 |
| Msa0406280 | Msa1433120 | 0.800753 | 1.243055e-48 | -8.615850e-47 |
| Msa0267000 | Msa0406280 | 0.829514 | 4.933071e-55 | -8.615850e-47 |
| Msa0267010 | Msa0406280 | 0.847166 | 1.373689e-59 | -8.615850e-47 |
| Msa0342240 | Msa0406280 | 0.819755 | 9.831573e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406280 | MtrunA17_Chr3g0096611 | 60.714 | 112 | 42 | 1 | 19 | 130 | 80 | 189 | 4.53e-44 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGAAATTTGCATGATAT+TGG | 0.250030 | 3_2:+42736850 | None:intergenic |
| ATCCTAGATTCGTCTCTTCT+TGG | 0.252159 | 3_2:+42736781 | None:intergenic |
| CAGCTGAATGGATGAACAAT+TGG | 0.278239 | 3_2:-42736819 | Msa0406280:CDS |
| ATAATTCTGAACAGCTTTCA+TGG | 0.289754 | 3_2:+42735694 | None:intergenic |
| CCCGCTACAACTTACTTCAT+TGG | 0.354160 | 3_2:-42734687 | Msa0406280:CDS |
| CATAAATTACTTCATCTTCC+TGG | 0.361617 | 3_2:+42736881 | None:intergenic |
| CCATTCAGCTGAAAACCCTT+TGG | 0.406942 | 3_2:+42736831 | None:intergenic |
| CATTCAGCTGAAAACCCTTT+GGG | 0.423435 | 3_2:+42736832 | None:intergenic |
| AGCTGAATGGATGAACAATT+GGG | 0.445652 | 3_2:-42736818 | Msa0406280:CDS |
| AAAACGGAAGTAAAAGGAAA+AGG | 0.449071 | 3_2:-42735638 | Msa0406280:CDS |
| AAAAGAGTCGGCTTACTTTG+CGG | 0.471693 | 3_2:-42735718 | Msa0406280:CDS |
| TATCATGCAAATTTCCCAAA+GGG | 0.488631 | 3_2:-42736846 | Msa0406280:CDS |
| ACCAATGAAGTAAGTTGTAG+CGG | 0.503111 | 3_2:+42734686 | None:intergenic |
| CACCAAGAAGAGACGAATCT+AGG | 0.508271 | 3_2:-42736783 | Msa0406280:CDS |
| GAGACGAATCTAGGATCGAT+AGG | 0.512439 | 3_2:-42736774 | Msa0406280:CDS |
| CCAATGAAGTAAGTTGTAGC+GGG | 0.566762 | 3_2:+42734687 | None:intergenic |
| ATATCATGCAAATTTCCCAA+AGG | 0.586333 | 3_2:-42736847 | Msa0406280:CDS |
| ATCATGTATGTCAATTGACC+AGG | 0.591129 | 3_2:-42736899 | None:intergenic |
| AGACGAATCTAGGATCGATA+GGG | 0.608327 | 3_2:-42736773 | Msa0406280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATCATGTAATT+AGG | - | chr3_2:42734849-42734868 | Msa0406280:intron | 10.0% |
| !! | AAAAAAAAATCATGTAATTA+GGG | - | chr3_2:42734850-42734869 | Msa0406280:intron | 10.0% |
| !!! | TTCAAAATAATCTTTTTTTA+TGG | + | chr3_2:42736553-42736572 | None:intergenic | 10.0% |
| !!! | AAATTAACATTTTATCATAT+CGG | + | chr3_2:42736745-42736764 | None:intergenic | 10.0% |
| !! | TAAAAAAAAATCATGTAATT+AGG | - | chr3_2:42734849-42734868 | Msa0406280:intron | 10.0% |
| !! | AAAAAAAAATCATGTAATTA+GGG | - | chr3_2:42734850-42734869 | Msa0406280:intron | 10.0% |
| !!! | TTCAAAATAATCTTTTTTTA+TGG | + | chr3_2:42736553-42736572 | None:intergenic | 10.0% |
| !!! | AAATTAACATTTTATCATAT+CGG | + | chr3_2:42736745-42736764 | None:intergenic | 10.0% |
| !! | CTTATGAAAAATAAATTGAA+CGG | + | chr3_2:42735652-42735671 | None:intergenic | 15.0% |
| !! | TGTTGATATAATAATTGTTT+GGG | + | chr3_2:42735750-42735769 | None:intergenic | 15.0% |
| !! | ATGTTGATATAATAATTGTT+TGG | + | chr3_2:42735751-42735770 | None:intergenic | 15.0% |
| !! | TTGGTAAAAAAAAACTTAAA+AGG | + | chr3_2:42736044-42736063 | None:intergenic | 15.0% |
| !! | AACTAAAATGGTTAAATATT+TGG | + | chr3_2:42736063-42736082 | None:intergenic | 15.0% |
| !! | TGTATTTATTGTAACTAAAA+TGG | + | chr3_2:42736075-42736094 | None:intergenic | 15.0% |
| !! | AAATAAAGACAAAATTCAAT+TGG | + | chr3_2:42736377-42736396 | None:intergenic | 15.0% |
| !!! | CTTTATTTAGTTTTGTTATA+AGG | - | chr3_2:42736389-42736408 | Msa0406280:intron | 15.0% |
| !!! | TTTTGAGTATTAGAAATTTA+AGG | - | chr3_2:42736589-42736608 | Msa0406280:intron | 15.0% |
| !! | CTTATGAAAAATAAATTGAA+CGG | + | chr3_2:42735652-42735671 | None:intergenic | 15.0% |
| !! | TGTTGATATAATAATTGTTT+GGG | + | chr3_2:42735750-42735769 | None:intergenic | 15.0% |
| !! | ATGTTGATATAATAATTGTT+TGG | + | chr3_2:42735751-42735770 | None:intergenic | 15.0% |
| !! | TTGGTAAAAAAAAACTTAAA+AGG | + | chr3_2:42736044-42736063 | None:intergenic | 15.0% |
| !! | AACTAAAATGGTTAAATATT+TGG | + | chr3_2:42736063-42736082 | None:intergenic | 15.0% |
| !! | TGTATTTATTGTAACTAAAA+TGG | + | chr3_2:42736075-42736094 | None:intergenic | 15.0% |
| !! | AAATAAAGACAAAATTCAAT+TGG | + | chr3_2:42736377-42736396 | None:intergenic | 15.0% |
| !!! | CTTTATTTAGTTTTGTTATA+AGG | - | chr3_2:42736389-42736408 | Msa0406280:intron | 15.0% |
| !!! | TTTTGAGTATTAGAAATTTA+AGG | - | chr3_2:42736589-42736608 | Msa0406280:intron | 15.0% |
| !!! | CAAATTCTTTAATTTTCTCA+AGG | + | chr3_2:42735064-42735083 | None:intergenic | 20.0% |
| !!! | AGGAGTTAACATTATTATTT+TGG | - | chr3_2:42735344-42735363 | Msa0406280:intron | 20.0% |
| !!! | GGAGTTAACATTATTATTTT+GGG | - | chr3_2:42735345-42735364 | Msa0406280:intron | 20.0% |
| !!! | GAGTTAACATTATTATTTTG+GGG | - | chr3_2:42735346-42735365 | Msa0406280:intron | 20.0% |
| !!! | AGTTAACATTATTATTTTGG+GGG | - | chr3_2:42735347-42735366 | Msa0406280:intron | 20.0% |
| !! | ATCTATAAAGACTAGAATTT+AGG | + | chr3_2:42735691-42735710 | None:intergenic | 20.0% |
| !! | TTATATCAACATCTTAAACA+TGG | - | chr3_2:42735759-42735778 | Msa0406280:intron | 20.0% |
| !!! | TTTAGTACTTTCTAGTATAT+TGG | - | chr3_2:42736184-42736203 | Msa0406280:intron | 20.0% |
| !!! | ATATTTTCATCAAGTTCTTT+TGG | + | chr3_2:42736828-42736847 | None:intergenic | 20.0% |
| !!! | CAAATTCTTTAATTTTCTCA+AGG | + | chr3_2:42735064-42735083 | None:intergenic | 20.0% |
| !!! | AGGAGTTAACATTATTATTT+TGG | - | chr3_2:42735344-42735363 | Msa0406280:intron | 20.0% |
| !!! | GGAGTTAACATTATTATTTT+GGG | - | chr3_2:42735345-42735364 | Msa0406280:intron | 20.0% |
| !!! | GAGTTAACATTATTATTTTG+GGG | - | chr3_2:42735346-42735365 | Msa0406280:intron | 20.0% |
| !!! | AGTTAACATTATTATTTTGG+GGG | - | chr3_2:42735347-42735366 | Msa0406280:intron | 20.0% |
| !! | ATCTATAAAGACTAGAATTT+AGG | + | chr3_2:42735691-42735710 | None:intergenic | 20.0% |
| !! | TTATATCAACATCTTAAACA+TGG | - | chr3_2:42735759-42735778 | Msa0406280:intron | 20.0% |
| !!! | TTTAGTACTTTCTAGTATAT+TGG | - | chr3_2:42736184-42736203 | Msa0406280:intron | 20.0% |
| !!! | ATATTTTCATCAAGTTCTTT+TGG | + | chr3_2:42736828-42736847 | None:intergenic | 20.0% |
| ! | TCATGTAATTAGGGATATAA+CGG | - | chr3_2:42734859-42734878 | Msa0406280:intron | 25.0% |
| ! | ATGCATGCTTATATTTATTG+AGG | + | chr3_2:42734912-42734931 | None:intergenic | 25.0% |
| ! | AATTAAGTTTATTAGACGTG+AGG | - | chr3_2:42735025-42735044 | Msa0406280:intron | 25.0% |
| ! | GATATCGAATTAAAAGTGAT+AGG | + | chr3_2:42735182-42735201 | None:intergenic | 25.0% |
| !!! | GTTAACATTATTATTTTGGG+GGG | - | chr3_2:42735348-42735367 | Msa0406280:intron | 25.0% |
| !!! | TTAACATTATTATTTTGGGG+GGG | - | chr3_2:42735349-42735368 | Msa0406280:intron | 25.0% |
| !!! | TTTGGTGTTGAATATAGTTT+TGG | - | chr3_2:42735486-42735505 | Msa0406280:intron | 25.0% |
| !! | TTGGTGGTTATATTTCTTAT+TGG | - | chr3_2:42735505-42735524 | Msa0406280:intron | 25.0% |
| !! | ATATTTCTTATTGGTGTTCA+AGG | - | chr3_2:42735514-42735533 | Msa0406280:intron | 25.0% |
| !!! | GATGTCTATATTAGTTCTAA+TGG | - | chr3_2:42735554-42735573 | Msa0406280:intron | 25.0% |
| !! | TTCTTTTAGATTTTGTCTGT+CGG | - | chr3_2:42735581-42735600 | Msa0406280:intron | 25.0% |
| ! | TATAAAGACTAGAATTTAGG+TGG | + | chr3_2:42735688-42735707 | None:intergenic | 25.0% |
| ! | TTTATAGATGAGAACATTAG+TGG | - | chr3_2:42735702-42735721 | Msa0406280:CDS | 25.0% |
| ! | CATATCATCATAAAAAGAGT+CGG | - | chr3_2:42735837-42735856 | Msa0406280:intron | 25.0% |
| !! | GTTCAGAATTATGAGATTTT+AGG | - | chr3_2:42735884-42735903 | Msa0406280:intron | 25.0% |
| ! | AAAAGAAAAACGGAAGTAAA+AGG | - | chr3_2:42735923-42735942 | Msa0406280:intron | 25.0% |
| !! | ATCTAGAATGATTGTTTCAA+TGG | + | chr3_2:42736337-42736356 | None:intergenic | 25.0% |
| ! | CCTTAAAGAACAAGTATATA+GGG | + | chr3_2:42736647-42736666 | None:intergenic | 25.0% |
| ! | TCCTTAAAGAACAAGTATAT+AGG | + | chr3_2:42736648-42736667 | None:intergenic | 25.0% |
| !!! | TCTCTGCTTTAAAAATTTTC+AGG | - | chr3_2:42736785-42736804 | Msa0406280:CDS | 25.0% |
| ! | TCATGTAATTAGGGATATAA+CGG | - | chr3_2:42734859-42734878 | Msa0406280:intron | 25.0% |
| ! | ATGCATGCTTATATTTATTG+AGG | + | chr3_2:42734912-42734931 | None:intergenic | 25.0% |
| ! | AATTAAGTTTATTAGACGTG+AGG | - | chr3_2:42735025-42735044 | Msa0406280:intron | 25.0% |
| ! | GATATCGAATTAAAAGTGAT+AGG | + | chr3_2:42735182-42735201 | None:intergenic | 25.0% |
| !!! | GTTAACATTATTATTTTGGG+GGG | - | chr3_2:42735348-42735367 | Msa0406280:intron | 25.0% |
| !!! | TTAACATTATTATTTTGGGG+GGG | - | chr3_2:42735349-42735368 | Msa0406280:intron | 25.0% |
| !!! | TTTGGTGTTGAATATAGTTT+TGG | - | chr3_2:42735486-42735505 | Msa0406280:intron | 25.0% |
| !! | TTGGTGGTTATATTTCTTAT+TGG | - | chr3_2:42735505-42735524 | Msa0406280:intron | 25.0% |
| !! | ATATTTCTTATTGGTGTTCA+AGG | - | chr3_2:42735514-42735533 | Msa0406280:intron | 25.0% |
| !!! | GATGTCTATATTAGTTCTAA+TGG | - | chr3_2:42735554-42735573 | Msa0406280:intron | 25.0% |
| !! | TTCTTTTAGATTTTGTCTGT+CGG | - | chr3_2:42735581-42735600 | Msa0406280:intron | 25.0% |
| ! | TATAAAGACTAGAATTTAGG+TGG | + | chr3_2:42735688-42735707 | None:intergenic | 25.0% |
| ! | TTTATAGATGAGAACATTAG+TGG | - | chr3_2:42735702-42735721 | Msa0406280:CDS | 25.0% |
| ! | CATATCATCATAAAAAGAGT+CGG | - | chr3_2:42735837-42735856 | Msa0406280:intron | 25.0% |
| !! | GTTCAGAATTATGAGATTTT+AGG | - | chr3_2:42735884-42735903 | Msa0406280:intron | 25.0% |
| ! | AAAAGAAAAACGGAAGTAAA+AGG | - | chr3_2:42735923-42735942 | Msa0406280:intron | 25.0% |
| !! | ATCTAGAATGATTGTTTCAA+TGG | + | chr3_2:42736337-42736356 | None:intergenic | 25.0% |
| ! | CCTTAAAGAACAAGTATATA+GGG | + | chr3_2:42736647-42736666 | None:intergenic | 25.0% |
| ! | TCCTTAAAGAACAAGTATAT+AGG | + | chr3_2:42736648-42736667 | None:intergenic | 25.0% |
| !!! | TCTCTGCTTTAAAAATTTTC+AGG | - | chr3_2:42736785-42736804 | Msa0406280:CDS | 25.0% |
| CATAAATTACTTCATCTTCC+TGG | + | chr3_2:42734689-42734708 | None:intergenic | 30.0% | |
| TTGGGAAATTTGCATGATAT+TGG | + | chr3_2:42734720-42734739 | None:intergenic | 30.0% | |
| ATATCATGCAAATTTCCCAA+AGG | - | chr3_2:42734720-42734739 | Msa0406280:CDS | 30.0% | |
| TATCATGCAAATTTCCCAAA+GGG | - | chr3_2:42734721-42734740 | Msa0406280:CDS | 30.0% | |
| CATGTAATTAGGGATATAAC+GGG | - | chr3_2:42734860-42734879 | Msa0406280:intron | 30.0% | |
| ! | CTCAGCTAAAATAGTTTTCA+AGG | - | chr3_2:42735115-42735134 | Msa0406280:intron | 30.0% |
| TGAAGTTCAAAAGCTATCAA+TGG | - | chr3_2:42735142-42735161 | Msa0406280:intron | 30.0% | |
| ! | GTTTCTTGACTCAAGTTTTA+AGG | - | chr3_2:42735210-42735229 | Msa0406280:intron | 30.0% |
| !!! | TCAAGTTTTAAGGCTTGTTT+TGG | - | chr3_2:42735220-42735239 | Msa0406280:intron | 30.0% |
| !!! | TGGTTTTTTTAGAGTGGTTA+CGG | - | chr3_2:42735387-42735406 | Msa0406280:intron | 30.0% |
| ATAGACATCGTCTAAACTTA+GGG | + | chr3_2:42735543-42735562 | None:intergenic | 30.0% | |
| TATAGACATCGTCTAAACTT+AGG | + | chr3_2:42735544-42735563 | None:intergenic | 30.0% | |
| GATATGTCAAAATGGTTATC+GGG | + | chr3_2:42735728-42735747 | None:intergenic | 30.0% | |
| GGATATGTCAAAATGGTTAT+CGG | + | chr3_2:42735729-42735748 | None:intergenic | 30.0% | |
| ! | TTGTTTGGGATATGTCAAAA+TGG | + | chr3_2:42735736-42735755 | None:intergenic | 30.0% |
| ATAATTCTGAACAGCTTTCA+TGG | + | chr3_2:42735876-42735895 | None:intergenic | 30.0% | |
| TCCACAACGTAAAAGAAAAA+CGG | - | chr3_2:42735913-42735932 | Msa0406280:intron | 30.0% | |
| AAAACGGAAGTAAAAGGAAA+AGG | - | chr3_2:42735929-42735948 | Msa0406280:intron | 30.0% | |
| !! | TTCTAGTATATTGGCTTGTT+AGG | - | chr3_2:42736193-42736212 | Msa0406280:intron | 30.0% |
| !! | TTACAGCTTGTTATGAATCA+TGG | - | chr3_2:42736237-42736256 | Msa0406280:intron | 30.0% |
| TAGAATGATTGTTTCAATGG+CGG | + | chr3_2:42736334-42736353 | None:intergenic | 30.0% | |
| AATGTAATCCATGAACTAGT+AGG | - | chr3_2:42736421-42736440 | Msa0406280:intron | 30.0% | |
| !! | ATTGACTCTAAAACTTGGTT+GGG | - | chr3_2:42736456-42736475 | Msa0406280:intron | 30.0% |
| CCCTATATACTTGTTCTTTA+AGG | - | chr3_2:42736644-42736663 | Msa0406280:intron | 30.0% | |
| CATAAATTACTTCATCTTCC+TGG | + | chr3_2:42734689-42734708 | None:intergenic | 30.0% | |
| TTGGGAAATTTGCATGATAT+TGG | + | chr3_2:42734720-42734739 | None:intergenic | 30.0% | |
| ATATCATGCAAATTTCCCAA+AGG | - | chr3_2:42734720-42734739 | Msa0406280:CDS | 30.0% | |
| TATCATGCAAATTTCCCAAA+GGG | - | chr3_2:42734721-42734740 | Msa0406280:CDS | 30.0% | |
| CATGTAATTAGGGATATAAC+GGG | - | chr3_2:42734860-42734879 | Msa0406280:intron | 30.0% | |
| ! | CTCAGCTAAAATAGTTTTCA+AGG | - | chr3_2:42735115-42735134 | Msa0406280:intron | 30.0% |
| TGAAGTTCAAAAGCTATCAA+TGG | - | chr3_2:42735142-42735161 | Msa0406280:intron | 30.0% | |
| ! | GTTTCTTGACTCAAGTTTTA+AGG | - | chr3_2:42735210-42735229 | Msa0406280:intron | 30.0% |
| !!! | TCAAGTTTTAAGGCTTGTTT+TGG | - | chr3_2:42735220-42735239 | Msa0406280:intron | 30.0% |
| !!! | TGGTTTTTTTAGAGTGGTTA+CGG | - | chr3_2:42735387-42735406 | Msa0406280:intron | 30.0% |
| ATAGACATCGTCTAAACTTA+GGG | + | chr3_2:42735543-42735562 | None:intergenic | 30.0% | |
| TATAGACATCGTCTAAACTT+AGG | + | chr3_2:42735544-42735563 | None:intergenic | 30.0% | |
| GATATGTCAAAATGGTTATC+GGG | + | chr3_2:42735728-42735747 | None:intergenic | 30.0% | |
| GGATATGTCAAAATGGTTAT+CGG | + | chr3_2:42735729-42735748 | None:intergenic | 30.0% | |
| ! | TTGTTTGGGATATGTCAAAA+TGG | + | chr3_2:42735736-42735755 | None:intergenic | 30.0% |
| ATAATTCTGAACAGCTTTCA+TGG | + | chr3_2:42735876-42735895 | None:intergenic | 30.0% | |
| TCCACAACGTAAAAGAAAAA+CGG | - | chr3_2:42735913-42735932 | Msa0406280:intron | 30.0% | |
| AAAACGGAAGTAAAAGGAAA+AGG | - | chr3_2:42735929-42735948 | Msa0406280:intron | 30.0% | |
| !! | TTCTAGTATATTGGCTTGTT+AGG | - | chr3_2:42736193-42736212 | Msa0406280:intron | 30.0% |
| !! | TTACAGCTTGTTATGAATCA+TGG | - | chr3_2:42736237-42736256 | Msa0406280:intron | 30.0% |
| TAGAATGATTGTTTCAATGG+CGG | + | chr3_2:42736334-42736353 | None:intergenic | 30.0% | |
| AATGTAATCCATGAACTAGT+AGG | - | chr3_2:42736421-42736440 | Msa0406280:intron | 30.0% | |
| !! | ATTGACTCTAAAACTTGGTT+GGG | - | chr3_2:42736456-42736475 | Msa0406280:intron | 30.0% |
| CCCTATATACTTGTTCTTTA+AGG | - | chr3_2:42736644-42736663 | Msa0406280:intron | 30.0% | |
| AGCTGAATGGATGAACAATT+GGG | - | chr3_2:42734749-42734768 | Msa0406280:CDS | 35.0% | |
| !!! | ATTGGGTGGTTTTTTTAGAG+TGG | - | chr3_2:42735381-42735400 | Msa0406280:intron | 35.0% |
| !!! | GGTGTTGAATATAGTTTTGG+TGG | - | chr3_2:42735489-42735508 | Msa0406280:intron | 35.0% |
| !! | TCCGTTTTTCTTTTACGTTG+TGG | + | chr3_2:42735917-42735936 | None:intergenic | 35.0% |
| !! | CATTGACTCTAAAACTTGGT+TGG | - | chr3_2:42736455-42736474 | Msa0406280:intron | 35.0% |
| !! | TTGACTCTAAAACTTGGTTG+GGG | - | chr3_2:42736457-42736476 | Msa0406280:intron | 35.0% |
| ACCAATGAAGTAAGTTGTAG+CGG | + | chr3_2:42736884-42736903 | None:intergenic | 35.0% | |
| AGCTGAATGGATGAACAATT+GGG | - | chr3_2:42734749-42734768 | Msa0406280:CDS | 35.0% | |
| !!! | ATTGGGTGGTTTTTTTAGAG+TGG | - | chr3_2:42735381-42735400 | Msa0406280:intron | 35.0% |
| !!! | GGTGTTGAATATAGTTTTGG+TGG | - | chr3_2:42735489-42735508 | Msa0406280:intron | 35.0% |
| !! | TCCGTTTTTCTTTTACGTTG+TGG | + | chr3_2:42735917-42735936 | None:intergenic | 35.0% |
| !! | CATTGACTCTAAAACTTGGT+TGG | - | chr3_2:42736455-42736474 | Msa0406280:intron | 35.0% |
| !! | TTGACTCTAAAACTTGGTTG+GGG | - | chr3_2:42736457-42736476 | Msa0406280:intron | 35.0% |
| ACCAATGAAGTAAGTTGTAG+CGG | + | chr3_2:42736884-42736903 | None:intergenic | 35.0% | |
| CATTCAGCTGAAAACCCTTT+GGG | + | chr3_2:42734738-42734757 | None:intergenic | 40.0% | |
| CAGCTGAATGGATGAACAAT+TGG | - | chr3_2:42734748-42734767 | Msa0406280:CDS | 40.0% | |
| ATCCTAGATTCGTCTCTTCT+TGG | + | chr3_2:42734789-42734808 | None:intergenic | 40.0% | |
| ! | AGACGAATCTAGGATCGATA+GGG | - | chr3_2:42734794-42734813 | Msa0406280:intron | 40.0% |
| AAGCTATCAATGGCTTTCTC+TGG | - | chr3_2:42735152-42735171 | Msa0406280:intron | 40.0% | |
| TATCAATGGCTTTCTCTGGT+GGG | - | chr3_2:42735156-42735175 | Msa0406280:intron | 40.0% | |
| TCATTGCTCGAGTGTGTAAT+TGG | - | chr3_2:42735304-42735323 | Msa0406280:intron | 40.0% | |
| CATTGCTCGAGTGTGTAATT+GGG | - | chr3_2:42735305-42735324 | Msa0406280:intron | 40.0% | |
| ! | TGTGTAATTGGGCTTTGATG+TGG | - | chr3_2:42735316-42735335 | Msa0406280:intron | 40.0% |
| !!! | GATGGGTGTGATGTTGATTT+TGG | - | chr3_2:42735468-42735487 | Msa0406280:intron | 40.0% |
| ! | AAAAGAGTCGGCTTACTTTG+CGG | - | chr3_2:42735849-42735868 | Msa0406280:intron | 40.0% |
| AAGCACATTTATGTAGCCTC+TGG | - | chr3_2:42736264-42736283 | Msa0406280:intron | 40.0% | |
| !! | GGAGCATTGACTCTAAAACT+TGG | - | chr3_2:42736451-42736470 | Msa0406280:intron | 40.0% |
| TAGTGTTACAAAGAGCAGCT+TGG | + | chr3_2:42736500-42736519 | None:intergenic | 40.0% | |
| AAAAACTCTTCAACGCGGAT+TGG | + | chr3_2:42736852-42736871 | None:intergenic | 40.0% | |
| CTGTCAAAAACTCTTCAACG+CGG | + | chr3_2:42736857-42736876 | None:intergenic | 40.0% | |
| CCAATGAAGTAAGTTGTAGC+GGG | + | chr3_2:42736883-42736902 | None:intergenic | 40.0% | |
| CATTCAGCTGAAAACCCTTT+GGG | + | chr3_2:42734738-42734757 | None:intergenic | 40.0% | |
| CAGCTGAATGGATGAACAAT+TGG | - | chr3_2:42734748-42734767 | Msa0406280:CDS | 40.0% | |
| ATCCTAGATTCGTCTCTTCT+TGG | + | chr3_2:42734789-42734808 | None:intergenic | 40.0% | |
| ! | AGACGAATCTAGGATCGATA+GGG | - | chr3_2:42734794-42734813 | Msa0406280:intron | 40.0% |
| AAGCTATCAATGGCTTTCTC+TGG | - | chr3_2:42735152-42735171 | Msa0406280:intron | 40.0% | |
| TATCAATGGCTTTCTCTGGT+GGG | - | chr3_2:42735156-42735175 | Msa0406280:intron | 40.0% | |
| TCATTGCTCGAGTGTGTAAT+TGG | - | chr3_2:42735304-42735323 | Msa0406280:intron | 40.0% | |
| CATTGCTCGAGTGTGTAATT+GGG | - | chr3_2:42735305-42735324 | Msa0406280:intron | 40.0% | |
| ! | TGTGTAATTGGGCTTTGATG+TGG | - | chr3_2:42735316-42735335 | Msa0406280:intron | 40.0% |
| !!! | GATGGGTGTGATGTTGATTT+TGG | - | chr3_2:42735468-42735487 | Msa0406280:intron | 40.0% |
| ! | AAAAGAGTCGGCTTACTTTG+CGG | - | chr3_2:42735849-42735868 | Msa0406280:intron | 40.0% |
| AAGCACATTTATGTAGCCTC+TGG | - | chr3_2:42736264-42736283 | Msa0406280:intron | 40.0% | |
| !! | GGAGCATTGACTCTAAAACT+TGG | - | chr3_2:42736451-42736470 | Msa0406280:intron | 40.0% |
| TAGTGTTACAAAGAGCAGCT+TGG | + | chr3_2:42736500-42736519 | None:intergenic | 40.0% | |
| AAAAACTCTTCAACGCGGAT+TGG | + | chr3_2:42736852-42736871 | None:intergenic | 40.0% | |
| CTGTCAAAAACTCTTCAACG+CGG | + | chr3_2:42736857-42736876 | None:intergenic | 40.0% | |
| CCAATGAAGTAAGTTGTAGC+GGG | + | chr3_2:42736883-42736902 | None:intergenic | 40.0% | |
| CCATTCAGCTGAAAACCCTT+TGG | + | chr3_2:42734739-42734758 | None:intergenic | 45.0% | |
| ! | CCAAAGGGTTTTCAGCTGAA+TGG | - | chr3_2:42734736-42734755 | Msa0406280:CDS | 45.0% |
| CACCAAGAAGAGACGAATCT+AGG | - | chr3_2:42734784-42734803 | Msa0406280:intron | 45.0% | |
| ! | GAGACGAATCTAGGATCGAT+AGG | - | chr3_2:42734793-42734812 | Msa0406280:intron | 45.0% |
| CTATCAATGGCTTTCTCTGG+TGG | - | chr3_2:42735155-42735174 | Msa0406280:intron | 45.0% | |
| !!! | GCTTGTTTTGGTGTCTTCTC+CGG | - | chr3_2:42735232-42735251 | Msa0406280:intron | 45.0% |
| ! | TGAGTGGTGGAGGAATTCAA+AGG | - | chr3_2:42735267-42735286 | Msa0406280:intron | 45.0% |
| ! | TTGGGGGGGTTTTTATCGAT+TGG | - | chr3_2:42735363-42735382 | Msa0406280:intron | 45.0% |
| !! | TGGGGGGGTTTTTATCGATT+GGG | - | chr3_2:42735364-42735383 | Msa0406280:intron | 45.0% |
| ! | TCGCTCGCTAGAAAGTATGA+TGG | - | chr3_2:42735450-42735469 | Msa0406280:intron | 45.0% |
| ! | CGCTCGCTAGAAAGTATGAT+GGG | - | chr3_2:42735451-42735470 | Msa0406280:intron | 45.0% |
| CATTTATGTAGCCTCTGGTG+TGG | - | chr3_2:42736269-42736288 | Msa0406280:intron | 45.0% | |
| AACAACAACATCCACACCAG+AGG | + | chr3_2:42736283-42736302 | None:intergenic | 45.0% | |
| CTGACAAGCCTACTAGTTCA+TGG | + | chr3_2:42736432-42736451 | None:intergenic | 45.0% | |
| CATGAACTAGTAGGCTTGTC+AGG | - | chr3_2:42736430-42736449 | Msa0406280:intron | 45.0% | |
| CCCGCTACAACTTACTTCAT+TGG | - | chr3_2:42736880-42736899 | Msa0406280:CDS | 45.0% | |
| CCATTCAGCTGAAAACCCTT+TGG | + | chr3_2:42734739-42734758 | None:intergenic | 45.0% | |
| ! | CCAAAGGGTTTTCAGCTGAA+TGG | - | chr3_2:42734736-42734755 | Msa0406280:CDS | 45.0% |
| CACCAAGAAGAGACGAATCT+AGG | - | chr3_2:42734784-42734803 | Msa0406280:intron | 45.0% | |
| ! | GAGACGAATCTAGGATCGAT+AGG | - | chr3_2:42734793-42734812 | Msa0406280:intron | 45.0% |
| CTATCAATGGCTTTCTCTGG+TGG | - | chr3_2:42735155-42735174 | Msa0406280:intron | 45.0% | |
| !!! | GCTTGTTTTGGTGTCTTCTC+CGG | - | chr3_2:42735232-42735251 | Msa0406280:intron | 45.0% |
| ! | TGAGTGGTGGAGGAATTCAA+AGG | - | chr3_2:42735267-42735286 | Msa0406280:intron | 45.0% |
| ! | TTGGGGGGGTTTTTATCGAT+TGG | - | chr3_2:42735363-42735382 | Msa0406280:intron | 45.0% |
| !! | TGGGGGGGTTTTTATCGATT+GGG | - | chr3_2:42735364-42735383 | Msa0406280:intron | 45.0% |
| ! | TCGCTCGCTAGAAAGTATGA+TGG | - | chr3_2:42735450-42735469 | Msa0406280:intron | 45.0% |
| ! | CGCTCGCTAGAAAGTATGAT+GGG | - | chr3_2:42735451-42735470 | Msa0406280:intron | 45.0% |
| CATTTATGTAGCCTCTGGTG+TGG | - | chr3_2:42736269-42736288 | Msa0406280:intron | 45.0% | |
| AACAACAACATCCACACCAG+AGG | + | chr3_2:42736283-42736302 | None:intergenic | 45.0% | |
| CTGACAAGCCTACTAGTTCA+TGG | + | chr3_2:42736432-42736451 | None:intergenic | 45.0% | |
| CATGAACTAGTAGGCTTGTC+AGG | - | chr3_2:42736430-42736449 | Msa0406280:intron | 45.0% | |
| CCCGCTACAACTTACTTCAT+TGG | - | chr3_2:42736880-42736899 | Msa0406280:CDS | 45.0% | |
| !!! | TGTTTTGGTGTCTTCTCCGG+TGG | - | chr3_2:42735235-42735254 | Msa0406280:intron | 50.0% |
| ! | TGGGCTTTGATGTGGTGTTG+AGG | - | chr3_2:42735324-42735343 | Msa0406280:intron | 50.0% |
| !! | GGGGGTTTTTATCGATTGGG+TGG | - | chr3_2:42735367-42735386 | Msa0406280:intron | 50.0% |
| !!! | TGTTTTGGTGTCTTCTCCGG+TGG | - | chr3_2:42735235-42735254 | Msa0406280:intron | 50.0% |
| ! | TGGGCTTTGATGTGGTGTTG+AGG | - | chr3_2:42735324-42735343 | Msa0406280:intron | 50.0% |
| !! | GGGGGTTTTTATCGATTGGG+TGG | - | chr3_2:42735367-42735386 | Msa0406280:intron | 50.0% |
| TGGTGTCTTCTCCGGTGGAT+TGG | - | chr3_2:42735240-42735259 | Msa0406280:intron | 55.0% | |
| !! | TGTCTTCTCCGGTGGATTGG+AGG | - | chr3_2:42735243-42735262 | Msa0406280:intron | 55.0% |
| CCACTCAACCTCCAATCCAC+CGG | + | chr3_2:42735254-42735273 | None:intergenic | 55.0% | |
| !! | GTGGATTGGAGGTTGAGTGG+TGG | - | chr3_2:42735254-42735273 | Msa0406280:intron | 55.0% |
| GATTGGAGGTTGAGTGGTGG+AGG | - | chr3_2:42735257-42735276 | Msa0406280:intron | 55.0% | |
| TACGGTGAGCAGCAGTCGAT+AGG | - | chr3_2:42735405-42735424 | Msa0406280:intron | 55.0% | |
| TGGTGTCTTCTCCGGTGGAT+TGG | - | chr3_2:42735240-42735259 | Msa0406280:intron | 55.0% | |
| !! | TGTCTTCTCCGGTGGATTGG+AGG | - | chr3_2:42735243-42735262 | Msa0406280:intron | 55.0% |
| CCACTCAACCTCCAATCCAC+CGG | + | chr3_2:42735254-42735273 | None:intergenic | 55.0% | |
| !! | GTGGATTGGAGGTTGAGTGG+TGG | - | chr3_2:42735254-42735273 | Msa0406280:intron | 55.0% |
| GATTGGAGGTTGAGTGGTGG+AGG | - | chr3_2:42735257-42735276 | Msa0406280:intron | 55.0% | |
| TACGGTGAGCAGCAGTCGAT+AGG | - | chr3_2:42735405-42735424 | Msa0406280:intron | 55.0% | |
| !! | CCGGTGGATTGGAGGTTGAG+TGG | - | chr3_2:42735251-42735270 | Msa0406280:intron | 60.0% |
| !! | GAGCAGCTTGGCGCTGATGT+GGG | + | chr3_2:42736488-42736507 | None:intergenic | 60.0% |
| !! | AGAGCAGCTTGGCGCTGATG+TGG | + | chr3_2:42736489-42736508 | None:intergenic | 60.0% |
| !! | CCGGTGGATTGGAGGTTGAG+TGG | - | chr3_2:42735251-42735270 | Msa0406280:intron | 60.0% |
| !! | GAGCAGCTTGGCGCTGATGT+GGG | + | chr3_2:42736488-42736507 | None:intergenic | 60.0% |
| !! | AGAGCAGCTTGGCGCTGATG+TGG | + | chr3_2:42736489-42736508 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 42734675 | 42736914 | 42734675 | ID=Msa0406280;Name=Msa0406280 |
| chr3_2 | mRNA | 42734675 | 42736914 | 42734675 | ID=Msa0406280-mRNA-1;Parent=Msa0406280;Name=Msa0406280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|130 |
| chr3_2 | exon | 42736774 | 42736914 | 42736774 | ID=Msa0406280-mRNA-1:exon:8214;Parent=Msa0406280-mRNA-1 |
| chr3_2 | exon | 42735610 | 42735753 | 42735610 | ID=Msa0406280-mRNA-1:exon:8213;Parent=Msa0406280-mRNA-1 |
| chr3_2 | exon | 42734675 | 42734782 | 42734675 | ID=Msa0406280-mRNA-1:exon:8212;Parent=Msa0406280-mRNA-1 |
| chr3_2 | CDS | 42736774 | 42736914 | 42736774 | ID=Msa0406280-mRNA-1:cds;Parent=Msa0406280-mRNA-1 |
| chr3_2 | CDS | 42735610 | 42735753 | 42735610 | ID=Msa0406280-mRNA-1:cds;Parent=Msa0406280-mRNA-1 |
| chr3_2 | CDS | 42734675 | 42734782 | 42734675 | ID=Msa0406280-mRNA-1:cds;Parent=Msa0406280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
